AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0536410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536410 MtrunA17_Chr4g0010501 90.594 404 14 2 1 380 91 494 0.0 750
Msa0536410 MtrunA17_Chr2g0329201 55.718 411 150 5 1 380 98 507 6.57e-163 466
Msa0536410 MtrunA17_Chr2g0329191 56.448 411 146 6 1 380 101 509 1.77e-160 460
Msa0536410 MtrunA17_Chr3g0087201 65.244 328 89 3 78 380 17 344 6.73e-160 452
Msa0536410 MtrunA17_Chr4g0033311 54.258 411 156 5 1 380 106 515 1.15e-159 459
Msa0536410 MtrunA17_Chr4g0033401 54.657 408 155 4 1 378 101 508 4.46e-159 457
Msa0536410 MtrunA17_Chr3g0088441 53.771 411 158 5 1 380 105 514 1.46e-157 453
Msa0536410 MtrunA17_Chr4g0033321 54.167 408 157 4 1 378 100 507 3.16e-157 452
Msa0536410 MtrunA17_Chr6g0482131 53.528 411 159 5 1 380 103 512 7.86e-156 448
Msa0536410 MtrunA17_Chr6g0482071 53.528 411 159 5 1 380 104 513 1.58e-155 448
Msa0536410 MtrunA17_Chr4g0033331 52.941 408 162 4 1 378 106 513 4.03e-155 447
Msa0536410 MtrunA17_Chr6g0482081 54.146 410 157 4 1 379 103 512 4.30e-155 447
Msa0536410 MtrunA17_Chr4g0033271 53.659 410 160 4 1 380 102 511 1.57e-154 445
Msa0536410 MtrunA17_Chr4g0033201 52.555 411 163 5 1 380 103 512 2.33e-150 434
Msa0536410 MtrunA17_Chr4g0033191 52.439 410 165 4 1 380 110 519 2.91e-149 432
Msa0536410 MtrunA17_Chr4g0033341 50.488 410 171 4 1 380 136 543 4.57e-144 419
Msa0536410 MtrunA17_Chr4g0033261 51.214 412 143 5 1 380 108 493 3.02e-143 416
Msa0536410 MtrunA17_Chr2g0329321 51.095 411 143 6 1 380 105 488 5.44e-143 415
Msa0536410 MtrunA17_Chr4g0033231 50.000 412 148 5 1 380 108 493 2.37e-141 411
Msa0536410 MtrunA17_Chr3g0087271 49.144 409 176 5 1 380 105 510 1.92e-140 409
Msa0536410 MtrunA17_Chr3g0087261 48.655 409 178 5 1 380 104 509 2.16e-137 401
Msa0536410 MtrunA17_Chr4g0043091 46.229 411 187 5 1 379 94 502 3.53e-129 380
Msa0536410 MtrunA17_Chr2g0301231 47.608 418 154 7 2 380 1 392 6.15e-128 373
Msa0536410 MtrunA17_Chr5g0430451 49.762 420 144 7 1 380 106 498 4.36e-124 367
Msa0536410 MtrunA17_Chr4g0006111 46.190 420 161 5 1 380 131 525 9.62e-124 367
Msa0536410 MtrunA17_Chr4g0006131 44.976 418 166 7 1 379 108 500 2.45e-121 360
Msa0536410 MtrunA17_Chr4g0042171 44.903 412 192 6 1 379 90 499 7.65e-118 352
Msa0536410 MtrunA17_Chr3g0090131 43.447 412 185 7 1 379 87 483 4.26e-115 343
Msa0536410 MtrunA17_Chr6g0482941 45.455 407 192 6 1 380 109 512 3.31e-114 342
Msa0536410 MtrunA17_Chr6g0482951 44.472 407 196 6 1 380 109 512 7.33e-112 336
Msa0536410 MtrunA17_Chr3g0090111 43.137 408 191 8 1 379 85 480 2.31e-111 334
Msa0536410 MtrunA17_Chr2g0288071 41.849 411 206 5 1 380 134 542 2.48e-109 331
Msa0536410 MtrunA17_Chr4g0074561 41.119 411 207 6 1 378 102 510 1.28e-108 328
Msa0536410 MtrunA17_Chr2g0288021 40.049 412 212 6 1 380 101 509 2.74e-108 327
Msa0536410 MtrunA17_Chr4g0006971 44.169 403 194 6 1 378 93 489 2.87e-106 322
Msa0536410 MtrunA17_Chr4g0074551 40.146 411 213 5 1 380 116 524 3.59e-106 323
Msa0536410 MtrunA17_Chr2g0317821 40.931 408 209 5 1 378 98 503 2.31e-105 320
Msa0536410 MtrunA17_Chr2g0317841 40.196 408 212 5 1 378 98 503 7.14e-105 319
Msa0536410 MtrunA17_Chr7g0242691 42.327 404 204 6 1 380 97 495 1.25e-103 315
Msa0536410 MtrunA17_Chr7g0242681 43.035 402 201 7 1 379 104 500 2.32e-103 315
Msa0536410 MtrunA17_Chr1g0195611 42.512 414 187 9 1 379 91 488 1.17e-97 300
Msa0536410 MtrunA17_Chr5g0428831 40.238 420 189 6 1 379 91 489 2.32e-97 299
Msa0536410 MtrunA17_Chr5g0418871 52.174 253 118 2 1 252 49 299 6.12e-94 284
Msa0536410 MtrunA17_Chr7g0234111 39.651 401 213 4 2 378 136 531 4.06e-90 281
Msa0536410 MtrunA17_Chr7g0234131 37.624 404 218 5 2 378 136 532 1.31e-89 280
Msa0536410 MtrunA17_Chr7g0234091 38.575 407 213 5 2 380 136 533 1.33e-87 275
Msa0536410 MtrunA17_Chr7g0230651 41.139 316 178 2 2 317 39 346 3.65e-85 263
Msa0536410 MtrunA17_Chr1g0195641 42.154 325 169 6 1 317 91 404 6.16e-82 256
Msa0536410 MtrunA17_Chr7g0236731 43.348 233 126 2 23 254 28 255 8.04e-56 184
Msa0536410 MtrunA17_Chr3g0087191 84.211 76 12 0 1 76 89 164 6.58e-40 139
Msa0536410 MtrunA17_Chr7g0227561 36.453 203 95 4 2 203 114 283 5.05e-39 141
Msa0536410 MtrunA17_Chr4g0068871 24.745 392 220 12 1 370 186 524 3.39e-24 104
Msa0536410 MtrunA17_Chr5g0418861 61.818 55 21 0 324 378 36 90 8.85e-18 77.8
Msa0536410 MtrunA17_Chr2g0288031 45.902 61 33 0 85 145 3 63 5.63e-15 68.9
Msa0536410 MtrunA17_Chr8g0352881 34.694 98 64 0 158 255 56 153 1.52e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536410 AT2G44450.1 55.309 405 156 3 1 380 98 502 2.88e-162 465
Msa0536410 AT5G44640.1 55.198 404 155 4 1 378 98 501 2.63e-161 462
Msa0536410 AT5G42260.1 55.750 400 151 4 1 374 98 497 1.45e-158 455
Msa0536410 AT3G60130.2 52.840 405 165 4 1 379 45 449 3.22e-152 437
Msa0536410 AT3G60130.1 52.840 405 165 4 1 379 97 501 6.94e-151 436
Msa0536410 AT2G25630.1 52.854 403 149 5 1 378 97 483 3.08e-150 434
Msa0536410 AT3G60130.3 51.238 404 162 4 1 379 45 438 1.06e-145 421
Msa0536410 AT2G44480.2 47.291 406 185 2 2 378 1 406 5.79e-139 402
Msa0536410 AT2G44480.1 47.291 406 185 2 2 378 103 508 1.06e-137 402
Msa0536410 AT2G44480.3 47.291 406 185 2 2 378 134 539 3.05e-137 402
Msa0536410 AT2G44450.2 52.137 351 143 3 55 380 1 351 3.30e-130 378
Msa0536410 AT3G60140.1 45.036 413 194 5 1 380 92 504 1.34e-127 379
Msa0536410 AT5G24550.1 45.169 414 193 6 1 380 98 511 5.09e-126 374
Msa0536410 AT3G18080.1 46.944 409 184 6 1 380 105 509 3.04e-125 370
Msa0536410 AT1G51470.1 45.232 409 189 6 1 380 109 511 9.00e-124 367
Msa0536410 AT1G26560.1 45.012 411 191 5 1 378 98 506 2.89e-121 360
Msa0536410 AT5G54570.2 45.366 410 189 6 2 378 1 408 3.04e-121 358
Msa0536410 AT1G47600.1 44.499 409 192 6 1 380 109 511 5.29e-121 360
Msa0536410 AT5G54570.1 45.255 411 190 6 1 378 97 505 1.53e-120 359
Msa0536410 AT1G47600.2 44.743 409 190 7 1 380 109 510 1.67e-120 358
Msa0536410 AT5G24540.1 46.377 414 188 6 1 380 98 511 1.69e-120 359
Msa0536410 AT3G60120.1 45.278 413 190 7 2 380 81 491 1.69e-119 357
Msa0536410 AT2G44470.3 43.099 413 202 5 1 380 95 507 1.38e-118 356
Msa0536410 AT5G36890.2 44.010 409 189 6 1 379 82 480 3.56e-116 347
Msa0536410 AT5G36890.1 44.010 409 189 6 1 379 82 480 4.25e-116 347
Msa0536410 AT2G44490.1 43.341 413 198 6 2 379 82 493 5.54e-116 348
Msa0536410 AT3G18070.1 45.721 409 187 8 1 380 96 498 9.89e-116 346
Msa0536410 AT3G18070.3 45.477 409 182 8 1 380 96 492 1.60e-115 345
Msa0536410 AT2G44460.1 45.012 411 192 6 1 378 95 504 2.04e-115 348
Msa0536410 AT4G21760.2 42.327 404 205 5 1 378 120 521 2.32e-113 341
Msa0536410 AT2G32860.1 43.171 410 201 5 1 378 161 570 6.50e-112 340
Msa0536410 AT2G32860.2 43.066 411 201 5 1 378 161 571 1.42e-111 339
Msa0536410 AT5G26000.1 43.204 412 197 6 1 378 103 511 1.58e-111 337
Msa0536410 AT5G25980.2 43.099 413 197 8 1 379 115 523 2.18e-110 334
Msa0536410 AT4G21760.1 41.687 403 199 5 1 378 120 511 4.29e-109 330
Msa0536410 AT4G27830.2 42.327 404 198 7 2 378 1 396 2.03e-108 325
Msa0536410 AT4G27830.1 42.222 405 199 7 1 378 88 484 1.23e-107 325
Msa0536410 AT1G02850.2 42.716 405 198 7 1 379 90 486 2.07e-105 319
Msa0536410 AT1G61820.1 41.019 412 207 7 2 380 98 506 2.31e-105 320
Msa0536410 AT1G66270.1 42.615 413 198 8 1 378 102 510 2.23e-104 318
Msa0536410 AT3G09260.1 41.404 413 208 7 1 380 101 512 2.46e-104 317
Msa0536410 AT1G75940.1 41.007 417 207 7 1 379 103 518 3.36e-104 317
Msa0536410 AT1G66280.1 41.748 412 203 7 1 378 102 510 1.33e-102 313
Msa0536410 AT1G66270.2 42.373 413 197 9 1 378 102 508 5.64e-102 311
Msa0536410 AT4G22100.1 40.786 407 206 6 1 379 84 483 3.54e-101 309
Msa0536410 AT1G61810.5 38.929 411 217 6 2 380 1 409 4.11e-101 306
Msa0536410 AT1G02850.5 40.654 428 197 8 1 379 90 509 9.38e-101 308
Msa0536410 AT3G60140.2 45.794 321 169 4 1 316 92 412 1.62e-100 305
Msa0536410 AT1G61810.1 38.835 412 218 6 1 380 100 509 2.10e-100 307
Msa0536410 AT1G02850.4 40.793 429 196 9 1 379 90 510 4.36e-100 306
Msa0536410 AT1G60090.2 40.541 407 205 6 1 379 86 483 5.02e-100 306
Msa0536410 AT4G27820.2 40.741 405 204 7 2 378 1 397 1.11e-99 302
Msa0536410 AT4G27820.3 40.741 405 204 7 2 378 1 397 1.11e-99 302
Msa0536410 AT3G03640.1 41.247 417 205 8 1 380 101 514 2.34e-99 305
Msa0536410 AT5G54570.3 45.988 324 168 4 1 319 97 418 5.15e-99 301
Msa0536410 AT4G27820.1 40.640 406 205 7 1 378 85 482 7.57e-99 303
Msa0536410 AT2G44470.1 44.109 331 180 4 1 326 95 425 1.04e-98 301
Msa0536410 AT5G28510.1 38.702 416 216 7 1 378 105 519 7.51e-98 301
Msa0536410 AT3G21370.1 39.183 416 214 8 1 379 99 512 2.06e-97 300
Msa0536410 AT5G26000.2 45.511 323 166 4 1 316 103 422 2.51e-97 297
Msa0536410 AT1G52400.3 38.995 418 210 6 1 379 105 516 3.70e-97 299
Msa0536410 AT1G52400.1 38.995 418 210 6 1 379 105 516 3.70e-97 299
Msa0536410 AT1G60090.1 39.614 414 206 7 1 379 86 490 4.34e-97 298
Msa0536410 AT1G61810.3 38.903 401 211 6 1 369 100 498 1.13e-96 298
Msa0536410 AT5G25980.3 45.031 322 167 5 1 316 115 432 6.59e-96 294
Msa0536410 AT5G25980.1 45.031 322 167 5 1 316 115 432 6.59e-96 294
Msa0536410 AT5G24540.2 46.201 329 171 4 1 323 98 426 8.95e-95 291
Msa0536410 AT3G62750.6 38.519 405 204 7 2 378 1 388 6.91e-94 287
Msa0536410 AT3G62750.5 38.519 405 204 7 2 378 1 388 6.91e-94 287
Msa0536410 AT2G44460.2 44.290 359 166 6 53 378 1 358 1.16e-93 287
Msa0536410 AT1G45191.4 38.424 406 211 5 1 379 91 484 1.86e-93 289
Msa0536410 AT1G02850.1 40.741 405 179 8 1 379 90 459 3.25e-93 287
Msa0536410 AT3G62750.1 38.424 406 205 7 1 378 85 473 4.38e-93 288
Msa0536410 AT2G44480.4 54.113 231 106 0 2 232 134 364 5.32e-93 284
Msa0536410 AT3G62750.2 38.424 406 205 7 1 378 111 499 1.01e-92 288
Msa0536410 AT5G48375.1 43.228 347 164 6 1 343 94 411 3.81e-92 283
Msa0536410 AT1G45191.6 37.990 408 221 6 1 379 91 495 1.86e-90 281
Msa0536410 AT1G45191.2 38.670 406 216 6 1 379 91 490 2.08e-90 281
Msa0536410 AT1G45191.1 37.990 408 221 6 1 379 103 507 2.74e-90 281
Msa0536410 AT3G62740.1 37.346 407 212 8 1 378 86 478 7.52e-89 277
Msa0536410 AT1G61820.3 38.965 367 189 6 47 380 3 367 1.76e-88 272
Msa0536410 AT3G18070.2 44.545 330 152 6 80 380 94 421 1.91e-88 273
Msa0536410 AT2G44470.2 47.212 269 139 3 1 266 95 363 9.69e-86 266
Msa0536410 AT1G02850.3 41.691 343 165 6 1 316 90 424 7.28e-85 265
Msa0536410 AT1G61810.4 40.062 322 187 4 1 317 100 420 4.64e-83 259
Msa0536410 AT3G18070.4 49.206 252 124 2 1 252 96 343 4.66e-83 258
Msa0536410 AT3G18070.7 44.051 311 143 6 99 380 1 309 1.21e-81 252
Msa0536410 AT3G62750.4 40.683 322 168 5 1 316 111 415 1.30e-80 254
Msa0536410 AT1G52400.2 39.941 338 187 5 1 328 105 436 3.69e-79 251
Msa0536410 AT3G62740.2 40.248 323 172 6 1 316 86 394 7.02e-79 249
Msa0536410 AT2G44480.5 40.728 302 150 2 106 378 1 302 9.34e-79 245
Msa0536410 AT1G60270.2 44.569 267 143 2 2 265 1 265 1.27e-77 241
Msa0536410 AT1G60270.1 44.403 268 144 2 1 265 87 352 9.61e-77 242
Msa0536410 AT1G45191.3 44.030 268 145 2 1 265 91 356 3.17e-76 242
Msa0536410 AT1G45191.5 44.030 268 145 2 1 265 91 356 3.50e-76 241
Msa0536410 AT3G62750.7 42.593 270 140 3 1 265 85 344 5.09e-73 232
Msa0536410 AT3G62750.8 42.593 270 140 3 1 265 85 344 5.09e-73 232
Msa0536410 AT3G62750.3 42.593 270 140 3 1 265 111 370 3.01e-72 232
Msa0536410 AT1G51490.1 44.000 275 134 7 1 268 84 345 5.03e-71 228
Msa0536410 AT1G61810.2 47.030 202 106 1 1 202 100 300 1.42e-66 213
Msa0536410 AT3G18070.5 44.215 242 130 3 80 317 94 334 3.25e-64 208
Msa0536410 AT3G18070.6 43.498 223 121 3 99 317 1 222 2.39e-57 187
Msa0536410 AT5G16580.1 36.842 266 152 6 54 317 7 258 3.40e-46 160
Msa0536410 AT3G06510.1 26.683 401 201 15 1 370 163 501 6.50e-25 107
Msa0536410 AT3G06510.2 25.420 417 220 16 1 370 163 535 1.16e-24 106

Find 116 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATTACTTACTCAATTT+TGG 0.021918 4_1:-13407908 None:intergenic
AATACTCAAAAGGGTCAAAT+TGG 0.180495 4_1:+13408879 Msa0536410:CDS
AGTCTACAGGCAGAAGTTTC+AGG 0.233974 4_1:+13408463 Msa0536410:CDS
CTTGATTAATTCCTCCCTTT+AGG 0.240918 4_1:-13407660 None:intergenic
GAAGTATGCTTCAGAGAATT+TGG 0.247941 4_1:+13408254 Msa0536410:CDS
ATAATATCTTGCTCGAAATA+TGG 0.256958 4_1:-13411183 None:intergenic
ATCATTTACATAACAGAAAA+TGG 0.264900 4_1:+13410392 Msa0536410:CDS
ACTGGTTAGAATTTGTTAAA+AGG 0.268716 4_1:+13410998 Msa0536410:three_prime_UTR
TCTAGTAGGCCTTGAATTCC+TGG 0.282668 4_1:-13410341 None:intergenic
TGTTAAAAGGAGATTGGATT+TGG 0.285093 4_1:+13411011 Msa0536410:three_prime_UTR
TATTTCGAGCAAGATATTAT+TGG 0.289012 4_1:+13411186 Msa0536410:three_prime_UTR
ATTTGATGATTTCTGATAAC+TGG 0.291847 4_1:+13411100 Msa0536410:three_prime_UTR
CGTAGGACCCTTTGACCATT+AGG 0.303963 4_1:-13409499 None:intergenic
TCCACGCGGGCAAGGAATAT+TGG 0.315712 4_1:-13409561 None:intergenic
CTTTATAGCACTCAAGGTTA+TGG 0.319215 4_1:+13408317 Msa0536410:CDS
TTTGTGTTTGTCAAGGTTCA+TGG 0.319761 4_1:+13409394 Msa0536410:intron
ATATCGGATTTAATGCTTAT+AGG 0.323102 4_1:+13407446 Msa0536410:CDS
GATGAGACTTTATTATCTAT+TGG 0.332987 4_1:+13411128 Msa0536410:three_prime_UTR
TAAATCCTAGTCATAGCTTT+AGG 0.340776 4_1:+13411051 Msa0536410:three_prime_UTR
GAATAGTTGGCCGCAGTAAT+GGG 0.361472 4_1:+13407269 Msa0536410:five_prime_UTR
AGAATTTGTTAAAAGGAGAT+TGG 0.371989 4_1:+13411005 Msa0536410:three_prime_UTR
CAAGCTCTTGAAGATGAATA+TGG 0.378007 4_1:+13407871 Msa0536410:CDS
TTGATATCAATTCATTTATG+AGG 0.383023 4_1:-13407705 None:intergenic
ATCTATCCACCAGGAATTCA+AGG 0.386366 4_1:+13410332 Msa0536410:CDS
ATACTCAAAAGGGTCAAATT+GGG 0.399188 4_1:+13408880 Msa0536410:CDS
GTGATGTTTGCAGGCTGCTT+CGG 0.404289 4_1:+13410298 Msa0536410:intron
GAGTGAAATAGAGTTATAAA+TGG 0.406414 4_1:-13407838 None:intergenic
GACTCCGAAGATACCGTAAA+AGG 0.412472 4_1:+13410926 Msa0536410:CDS
TTTCCTTGGTGTATTCTAGT+AGG 0.414194 4_1:-13410355 None:intergenic
TTCGAGAAGTCAATTCCTAA+TGG 0.417279 4_1:+13409484 Msa0536410:CDS
AATTGACTTCTCGAAAACTT+TGG 0.422485 4_1:-13409476 None:intergenic
GCTGGCTACACACTCCGCTT+TGG 0.432294 4_1:+13410877 Msa0536410:CDS
TTATTTCTCCGCAAATGAAA+TGG 0.436041 4_1:+13410967 Msa0536410:exon
AGCTATGACTAGGATTTAGA+AGG 0.436390 4_1:-13411046 None:intergenic
GTTTGCAGGCTGCTTCGGAC+TGG 0.438020 4_1:+13410303 Msa0536410:intron
CTGCAGCGTGAGAAAGAATC+AGG 0.440111 4_1:-13408433 None:intergenic
AACTTTGAAGAGCAAAGTAT+TGG 0.441112 4_1:-13410183 None:intergenic
GACTTTGTTAACTATTACTG+CGG 0.442947 4_1:-13409441 None:intergenic
GGTTCTTCAGATAGAATAGT+TGG 0.453820 4_1:+13407256 None:intergenic
TCTATGACAGAATACTCAAA+AGG 0.457748 4_1:+13408869 Msa0536410:intron
CAGGAATGGAGTGAGGGTGA+AGG 0.459362 4_1:+13410813 Msa0536410:intron
AGAATAGTTGGCCGCAGTAA+TGG 0.466746 4_1:+13407268 Msa0536410:five_prime_UTR
ACGAAGGACCATTTCATTTG+CGG 0.475678 4_1:-13410975 None:intergenic
GTCAATTCCTAATGGTCAAA+GGG 0.482994 4_1:+13409492 Msa0536410:CDS
GTGTATGTTGATTACAAGAA+TGG 0.488440 4_1:+13410904 Msa0536410:CDS
TTACTCACGAGGTAGTAATC+TGG 0.492260 4_1:-13407485 None:intergenic
GGACAGAGAAGCATTGTCTC+GGG 0.493701 4_1:+13408950 Msa0536410:CDS
AGGAATGGAGTGAGGGTGAA+GGG 0.495640 4_1:+13410814 Msa0536410:intron
CCATTGCTTTATAGCACTCA+AGG 0.495840 4_1:+13408311 Msa0536410:CDS
CGGGATATGTACCAGAGTGC+AGG 0.496117 4_1:-13409421 None:intergenic
AATGAAATGGTCCTTCGTAC+TGG 0.499601 4_1:+13410980 Msa0536410:exon
TTGGTGACAGAGTTAAGCAT+TGG 0.504731 4_1:+13408273 Msa0536410:CDS
GTGGCCATGATGAAGGATAT+CGG 0.506728 4_1:+13407430 Msa0536410:exon
ATTCATCTTCAAGAGCTTGA+GGG 0.509735 4_1:-13407867 None:intergenic
AGCACTCAAGGTTATGGAAG+TGG 0.512096 4_1:+13408323 Msa0536410:CDS
CTGCAGCAGTAAAAGTCTAC+AGG 0.513396 4_1:+13408450 Msa0536410:CDS
CAGGTGGTGTGTAACTACAT+AGG 0.524621 4_1:-13408414 None:intergenic
ATACTTTGCGTGGTCACTGT+TGG 0.526753 4_1:+13410837 Msa0536410:CDS
TATTCATCTTCAAGAGCTTG+AGG 0.530370 4_1:-13407868 None:intergenic
AGATAATAAAGTCTCATCCT+TGG 0.531677 4_1:-13411123 None:intergenic
TTTGGCTTTCCACGCGGGCA+AGG 0.531835 4_1:-13409569 None:intergenic
GGAAGATGTGGCCATGATGA+AGG 0.534290 4_1:+13407423 Msa0536410:intron
GTAGCGGTGGTATGAATCAA+TGG 0.535833 4_1:-13407299 None:intergenic
GCCACTATCTCAATCAAAAG+AGG 0.538692 4_1:+13408929 Msa0536410:CDS
AGTCAATTCCTAATGGTCAA+AGG 0.539323 4_1:+13409491 Msa0536410:CDS
ATGAGGTTGATGATGGCAAA+AGG 0.540701 4_1:+13410504 Msa0536410:CDS
AAACATTTGGCTTTCCACGC+GGG 0.542000 4_1:-13409574 None:intergenic
AAAGGGTCCTACGATTTCGT+TGG 0.548003 4_1:+13409509 Msa0536410:CDS
TCGGTAGCTAACTGCAATGC+CGG 0.553805 4_1:+13408374 Msa0536410:CDS
CTATGACAGAATACTCAAAA+GGG 0.556948 4_1:+13408870 Msa0536410:intron
AGGACAGAGAAGCATTGTCT+CGG 0.558942 4_1:+13408949 Msa0536410:CDS
TCCTTGCTTAGTTCTTACAA+TGG 0.559128 4_1:-13411074 None:intergenic
AATTGGGCAGGAATGGAGTG+AGG 0.563330 4_1:+13410806 Msa0536410:intron
TACCGACTTAGAGCATCTCA+TGG 0.567305 4_1:-13408357 None:intergenic
ATAAATGAATTGATATCAAG+TGG 0.568096 4_1:+13407709 Msa0536410:CDS
AGGTGGTGTGTAACTACATA+GGG 0.571427 4_1:-13408413 None:intergenic
GGGCTCAGTACTAGAATCAC+CGG 0.585315 4_1:-13408393 None:intergenic
GGGATATGTACCAGAGTGCA+GGG 0.589935 4_1:-13409420 None:intergenic
CCTTGAGTGCTATAAAGCAA+TGG 0.592832 4_1:-13408311 None:intergenic
ACTTTGTTAACTATTACTGC+GGG 0.593060 4_1:-13409440 None:intergenic
TTCATGGAACCCCTGCACTC+TGG 0.594112 4_1:+13409410 Msa0536410:CDS
AAGGGAGGAATTAATCAAGA+AGG 0.596031 4_1:+13407664 Msa0536410:CDS
AAATCCGATATCCTTCATCA+TGG 0.596988 4_1:-13407434 None:intergenic
TACTCAAAAGGGTCAAATTG+GGG 0.599188 4_1:+13408881 Msa0536410:CDS
GACTTAGAGCATCTCATGGG+TGG 0.600122 4_1:-13408353 None:intergenic
TCAGGTGGAAACCTAAAGGG+AGG 0.600801 4_1:+13407649 Msa0536410:intron
GCCAATATTCCTTGCCCGCG+TGG 0.601614 4_1:+13409560 Msa0536410:CDS
TGATTCATACCACCGCTACA+AGG 0.605261 4_1:+13407303 Msa0536410:five_prime_UTR
AGTAATAGTTAACAAAGTCA+AGG 0.607195 4_1:+13409445 Msa0536410:CDS
GGGTAACACTAAATTCTGCA+TGG 0.607270 4_1:+13408901 Msa0536410:CDS
ATGAAAGTACCTTGTAGCGG+TGG 0.612379 4_1:-13407312 None:intergenic
GCCATTGTAAGAACTAAGCA+AGG 0.612758 4_1:+13411073 Msa0536410:three_prime_UTR
ACCGACTTAGAGCATCTCAT+GGG 0.625987 4_1:-13408356 None:intergenic
GGAGTCGATGAGGTTGATGA+TGG 0.626584 4_1:+13410497 Msa0536410:intron
AATAGTTGGCCGCAGTAATG+GGG 0.627163 4_1:+13407270 Msa0536410:five_prime_UTR
ACCCATGAGATGCTCTAAGT+CGG 0.628465 4_1:+13408355 Msa0536410:CDS
GTTCACTCCTCAGGAAGATG+TGG 0.630108 4_1:+13407411 Msa0536410:intron
AATGGCCTAAAGCTATGACT+AGG 0.638363 4_1:-13411056 None:intergenic
AAAACATTTGGCTTTCCACG+CGG 0.639100 4_1:-13409575 None:intergenic
TGGCTCTATATCTATCCACC+AGG 0.643499 4_1:+13410323 Msa0536410:CDS
ACAAATTCTAACCAGTACGA+AGG 0.645316 4_1:-13410991 None:intergenic
AGTAGGCCTTGAATTCCTGG+TGG 0.646434 4_1:-13410338 None:intergenic
GTTTAAACCAACGAAATCGT+AGG 0.647385 4_1:-13409516 None:intergenic
GCTCTTGAAGATGAATATGG+TGG 0.649801 4_1:+13407874 Msa0536410:CDS
ATTGGGCAGGAATGGAGTGA+GGG 0.651926 4_1:+13410807 Msa0536410:intron
TGATTTCTGATAACTGGCCA+AGG 0.666328 4_1:+13411106 Msa0536410:three_prime_UTR
GGGTGAAGGGATACTTTGCG+TGG 0.666366 4_1:+13410827 Msa0536410:CDS
GACAGAGAAGCATTGTCTCG+GGG 0.676661 4_1:+13408951 Msa0536410:CDS
AATATATGCAGGAGTCGATG+AGG 0.679739 4_1:+13410487 Msa0536410:intron
AAAATGAAAGTACCTTGTAG+CGG 0.682139 4_1:-13407315 None:intergenic
CAACATACACAAGTCCAAAG+CGG 0.697381 4_1:-13410891 None:intergenic
ACCGTAAAAGGTCTGCATTG+TGG 0.697987 4_1:+13410938 Msa0536410:CDS
CAGCGTGAGAAAGAATCAGG+TGG 0.705805 4_1:-13408430 None:intergenic
GGATATGTACCAGAGTGCAG+GGG 0.708874 4_1:-13409419 None:intergenic
TGGCAACATCCCCATTACTG+CGG 0.709524 4_1:-13407279 None:intergenic
AGGCCTACTAGAATACACCA+AGG 0.748279 4_1:+13410352 Msa0536410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATACTAGTTTATTTTA+AGG - chr4_1:13407783-13407802 None:intergenic 10.0%
!! AAAAAAAATGTTAAGAAAAT+AGG + chr4_1:13408131-13408150 Msa0536410:intron 10.0%
!! AAATTGATTAAAAAATTAGA+AGG + chr4_1:13409154-13409173 Msa0536410:intron 10.0%
!! TAATGTAAATTATATTAATG+TGG + chr4_1:13409183-13409202 Msa0536410:intron 10.0%
!!! TTTTCAAAAAAAAAATATTG+AGG - chr4_1:13410263-13410282 None:intergenic 10.0%
!!! TCAATATTTTTTTTTTGAAA+AGG + chr4_1:13410262-13410281 Msa0536410:intron 10.0%
!! ATAGAAATTGATTACAATTT+AGG + chr4_1:13408537-13408556 Msa0536410:intron 15.0%
!!! ATAAGTTATTACATTTTACT+TGG + chr4_1:13409760-13409779 Msa0536410:intron 15.0%
!!! TAAGTTATTACATTTTACTT+GGG + chr4_1:13409761-13409780 Msa0536410:intron 15.0%
!! TTCTAATTAAAACTTTGAAT+TGG + chr4_1:13410789-13410808 Msa0536410:intron 15.0%
!! TCTAATTAAAACTTTGAATT+GGG + chr4_1:13410790-13410809 Msa0536410:intron 15.0%
!! TGTATGATAAATTGCTAATT+TGG + chr4_1:13407572-13407591 Msa0536410:intron 20.0%
!!! CTTAACTATATTGTTTTTTC+AGG + chr4_1:13407631-13407650 Msa0536410:intron 20.0%
!! TTGATATCAATTCATTTATG+AGG - chr4_1:13407708-13407727 None:intergenic 20.0%
!! ATAAATGAATTGATATCAAG+TGG + chr4_1:13407709-13407728 Msa0536410:CDS 20.0%
!!! ACAATTACTTACTCAATTTT+GGG - chr4_1:13407910-13407929 None:intergenic 20.0%
!!! TACAATTACTTACTCAATTT+TGG - chr4_1:13407911-13407930 None:intergenic 20.0%
!! ATAATTAGTTGCAACTAATA+TGG + chr4_1:13408015-13408034 Msa0536410:intron 20.0%
!! TAATTAGTTGCAACTAATAT+GGG + chr4_1:13408016-13408035 Msa0536410:intron 20.0%
!!! AAATGTCAATTTTCGATTAT+TGG - chr4_1:13408197-13408216 None:intergenic 20.0%
!! TTTAATCAATTTATACGAAC+TGG - chr4_1:13409146-13409165 None:intergenic 20.0%
!! TGATTAAAAAATTAGAAGGT+TGG + chr4_1:13409158-13409177 Msa0536410:intron 20.0%
!! TATATTAATGTGGAATACAT+TGG + chr4_1:13409193-13409212 Msa0536410:intron 20.0%
!! GAAACTTCAATAGTTAAAAA+AGG - chr4_1:13409646-13409665 None:intergenic 20.0%
!! CAAAAAAAAAATATTGAGGA+TGG - chr4_1:13410259-13410278 None:intergenic 20.0%
!!! TTTTCTGTTATGTAAATGAT+TGG - chr4_1:13410392-13410411 None:intergenic 20.0%
!! ATCATTTACATAACAGAAAA+TGG + chr4_1:13410392-13410411 Msa0536410:CDS 20.0%
!! TCTAATATTCAAATATATGC+AGG + chr4_1:13410476-13410495 Msa0536410:intron 20.0%
!!! TTCATTTTAAACTCACATTA+TGG - chr4_1:13410591-13410610 None:intergenic 20.0%
! ATATCGGATTTAATGCTTAT+AGG + chr4_1:13407446-13407465 Msa0536410:CDS 25.0%
!!! AACTATATTGTTTTTTCAGG+TGG + chr4_1:13407634-13407653 Msa0536410:intron 25.0%
! GAGTGAAATAGAGTTATAAA+TGG - chr4_1:13407841-13407860 None:intergenic 25.0%
! ATTATTGATCGAAATTCATG+CGG - chr4_1:13408083-13408102 None:intergenic 25.0%
!!! TTTCTATTTCTATATGCTGT+TGG - chr4_1:13408524-13408543 None:intergenic 25.0%
! ATGTTGTTAGTAAAAGACTA+AGG + chr4_1:13408576-13408595 Msa0536410:intron 25.0%
!! GTTTTCATAAAATTCATGTG+TGG + chr4_1:13409047-13409066 Msa0536410:intron 25.0%
!! CAATGAATTATTCCTTTTTG+AGG - chr4_1:13409331-13409350 None:intergenic 25.0%
!!! CATTGTTTTCTAGTAATTTC+CGG + chr4_1:13409346-13409365 Msa0536410:intron 25.0%
!! TAATCATTTTGTGTTTGTCA+AGG + chr4_1:13409387-13409406 Msa0536410:intron 25.0%
! AGTAATAGTTAACAAAGTCA+AGG + chr4_1:13409445-13409464 Msa0536410:CDS 25.0%
! CAATTGTCTGTAAAAACATT+TGG - chr4_1:13409590-13409609 None:intergenic 25.0%
! ACTAAAAGAATCTAAACGAA+GGG - chr4_1:13409939-13409958 None:intergenic 25.0%
!!! TAATTTTAGAGGAGCTAAAT+CGG - chr4_1:13410044-13410063 None:intergenic 25.0%
!! GAAGCGATAAATAATTTTAG+AGG - chr4_1:13410055-13410074 None:intergenic 25.0%
!!! ACAAACAAAGTATTGTAACA+TGG - chr4_1:13410451-13410470 None:intergenic 25.0%
!!! ACTGGTTAGAATTTGTTAAA+AGG + chr4_1:13410998-13411017 Msa0536410:three_prime_UTR 25.0%
!!! AGAATTTGTTAAAAGGAGAT+TGG + chr4_1:13411005-13411024 Msa0536410:three_prime_UTR 25.0%
!! ATTTGATGATTTCTGATAAC+TGG + chr4_1:13411100-13411119 Msa0536410:three_prime_UTR 25.0%
! GATGAGACTTTATTATCTAT+TGG + chr4_1:13411128-13411147 Msa0536410:three_prime_UTR 25.0%
! ATAATATCTTGCTCGAAATA+TGG - chr4_1:13411186-13411205 None:intergenic 25.0%
! TATTTCGAGCAAGATATTAT+TGG + chr4_1:13411186-13411205 Msa0536410:three_prime_UTR 25.0%
!! AAAATGAAAGTACCTTGTAG+CGG - chr4_1:13407318-13407337 None:intergenic 30.0%
GAGATTTGATTACATCGAAA+TGG + chr4_1:13407380-13407399 Msa0536410:intron 30.0%
! CTTATTAGAAAACTAGTCTG+AGG - chr4_1:13407534-13407553 None:intergenic 30.0%
!!! TGATGCACATTTTTTTCTAC+AGG + chr4_1:13407808-13407827 Msa0536410:intron 30.0%
CGGTTCAAACTAATTTATGT+CGG - chr4_1:13408063-13408082 None:intergenic 30.0%
! TCAATTTTCGATTATTGGCA+TGG - chr4_1:13408192-13408211 None:intergenic 30.0%
!!! GACATTTTGATTATGCAAAC+AGG + chr4_1:13408210-13408229 Msa0536410:intron 30.0%
! ACAATTTAGGACTCAAATCA+TGG + chr4_1:13408550-13408569 Msa0536410:intron 30.0%
! ATTGTTTTCATAAGCTATCC+TGG + chr4_1:13408719-13408738 Msa0536410:intron 30.0%
ACAGTTAGTTATTGCTTGTT+TGG - chr4_1:13408842-13408861 None:intergenic 30.0%
TCTATGACAGAATACTCAAA+AGG + chr4_1:13408869-13408888 Msa0536410:intron 30.0%
CTATGACAGAATACTCAAAA+GGG + chr4_1:13408870-13408889 Msa0536410:intron 30.0%
AATACTCAAAAGGGTCAAAT+TGG + chr4_1:13408879-13408898 Msa0536410:CDS 30.0%
ATACTCAAAAGGGTCAAATT+GGG + chr4_1:13408880-13408899 Msa0536410:CDS 30.0%
ATGATGAGTTTGGATTCAAA+CGG + chr4_1:13409252-13409271 Msa0536410:intron 30.0%
ACTTTGTTAACTATTACTGC+GGG - chr4_1:13409443-13409462 None:intergenic 30.0%
GACTTTGTTAACTATTACTG+CGG - chr4_1:13409444-13409463 None:intergenic 30.0%
! AATTGACTTCTCGAAAACTT+TGG - chr4_1:13409479-13409498 None:intergenic 30.0%
!! TTTGCATCAGCTTTAAGAAA+TGG + chr4_1:13409702-13409721 Msa0536410:intron 30.0%
TTAAGAAATGGAGTTCTCAT+TGG + chr4_1:13409714-13409733 Msa0536410:intron 30.0%
CACTAAAAGAATCTAAACGA+AGG - chr4_1:13409940-13409959 None:intergenic 30.0%
ACTAAAACTAAGAGTTGACA+AGG + chr4_1:13409980-13409999 Msa0536410:intron 30.0%
CTAAAACTAAGAGTTGACAA+GGG + chr4_1:13409981-13410000 Msa0536410:intron 30.0%
! AACTTTGAAGAGCAAAGTAT+TGG - chr4_1:13410186-13410205 None:intergenic 30.0%
! TGGATTGCTAAATTTTTCCT+TGG - chr4_1:13410372-13410391 None:intergenic 30.0%
TGACTAATATAGTCTATCCT+TGG - chr4_1:13410545-13410564 None:intergenic 30.0%
ACCACTTATTGTATCTTCAA+AGG + chr4_1:13410564-13410583 Msa0536410:intron 30.0%
CCACTTATTGTATCTTCAAA+GGG + chr4_1:13410565-13410584 Msa0536410:intron 30.0%
!! TGTGTTTTGAACTCAACAAT+CGG + chr4_1:13410764-13410783 Msa0536410:intron 30.0%
ATTAAAACTTTGAATTGGGC+AGG + chr4_1:13410794-13410813 Msa0536410:intron 30.0%
! GTGTATGTTGATTACAAGAA+TGG + chr4_1:13410904-13410923 Msa0536410:CDS 30.0%
! TTATTTCTCCGCAAATGAAA+TGG + chr4_1:13410967-13410986 Msa0536410:exon 30.0%
TGTTAAAAGGAGATTGGATT+TGG + chr4_1:13411011-13411030 Msa0536410:three_prime_UTR 30.0%
TAAATCCTAGTCATAGCTTT+AGG + chr4_1:13411051-13411070 Msa0536410:three_prime_UTR 30.0%
AGATAATAAAGTCTCATCCT+TGG - chr4_1:13411126-13411145 None:intergenic 30.0%
AAATCCGATATCCTTCATCA+TGG - chr4_1:13407437-13407456 None:intergenic 35.0%
! CTTATAGGTTTTCGATCTCT+TGG + chr4_1:13407461-13407480 Msa0536410:CDS 35.0%
!! TCATTAGCTTGTGTGATTCT+AGG + chr4_1:13407596-13407615 Msa0536410:intron 35.0%
!! CATTAGCTTGTGTGATTCTA+GGG + chr4_1:13407597-13407616 Msa0536410:intron 35.0%
!!! TTTTTCAGGTGGAAACCTAA+AGG + chr4_1:13407645-13407664 Msa0536410:intron 35.0%
!!! TTTTCAGGTGGAAACCTAAA+GGG + chr4_1:13407646-13407665 Msa0536410:intron 35.0%
CTTGATTAATTCCTCCCTTT+AGG - chr4_1:13407663-13407682 None:intergenic 35.0%
AAGGGAGGAATTAATCAAGA+AGG + chr4_1:13407664-13407683 Msa0536410:CDS 35.0%
ATTCATCTTCAAGAGCTTGA+GGG - chr4_1:13407870-13407889 None:intergenic 35.0%
TATTCATCTTCAAGAGCTTG+AGG - chr4_1:13407871-13407890 None:intergenic 35.0%
CAAGCTCTTGAAGATGAATA+TGG + chr4_1:13407871-13407890 Msa0536410:CDS 35.0%
CGGTTTCATTTCCTTTCAAT+GGG - chr4_1:13408043-13408062 None:intergenic 35.0%
TCGGTTTCATTTCCTTTCAA+TGG - chr4_1:13408044-13408063 None:intergenic 35.0%
TTCGATTATTGGCATGGAAT+AGG - chr4_1:13408186-13408205 None:intergenic 35.0%
GAAGTATGCTTCAGAGAATT+TGG + chr4_1:13408254-13408273 Msa0536410:CDS 35.0%
CTTTATAGCACTCAAGGTTA+TGG + chr4_1:13408317-13408336 Msa0536410:CDS 35.0%
TAAAAGACTAAGGCTCTACT+TGG + chr4_1:13408586-13408605 Msa0536410:intron 35.0%
GAGCTTAAGGAAACAACTTA+TGG - chr4_1:13408761-13408780 None:intergenic 35.0%
!! AGACTATTTTGGAGAGCTTA+AGG - chr4_1:13408774-13408793 None:intergenic 35.0%
! AAACACGTGTGAGACTATTT+TGG - chr4_1:13408785-13408804 None:intergenic 35.0%
! ATCTTATCTGAGGTATCTAC+TGG - chr4_1:13408811-13408830 None:intergenic 35.0%
! GGATTGACTTATCTTATCTG+AGG - chr4_1:13408821-13408840 None:intergenic 35.0%
TACTCAAAAGGGTCAAATTG+GGG + chr4_1:13408881-13408900 Msa0536410:CDS 35.0%
!! TCCTCTTTTGATTGAGATAG+TGG - chr4_1:13408933-13408952 None:intergenic 35.0%
!! GTCTTGCTTTTATGTATGAC+TGG + chr4_1:13408973-13408992 Msa0536410:CDS 35.0%
CAAACTCATCATGTTTCACT+AGG - chr4_1:13409244-13409263 None:intergenic 35.0%
CTAGTGAAACATGATGAGTT+TGG + chr4_1:13409242-13409261 Msa0536410:intron 35.0%
CAAACGGAATATTGTGAAAG+AGG + chr4_1:13409268-13409287 Msa0536410:intron 35.0%
AATATTGTGAAAGAGGTCCA+GGG + chr4_1:13409275-13409294 Msa0536410:intron 35.0%
CAAATTCTCACTCCTCAAAA+AGG + chr4_1:13409316-13409335 Msa0536410:intron 35.0%
TTTGTGTTTGTCAAGGTTCA+TGG + chr4_1:13409394-13409413 Msa0536410:intron 35.0%
TTCGAGAAGTCAATTCCTAA+TGG + chr4_1:13409484-13409503 Msa0536410:CDS 35.0%
AGTCAATTCCTAATGGTCAA+AGG + chr4_1:13409491-13409510 Msa0536410:CDS 35.0%
GTCAATTCCTAATGGTCAAA+GGG + chr4_1:13409492-13409511 Msa0536410:CDS 35.0%
GTTTAAACCAACGAAATCGT+AGG - chr4_1:13409519-13409538 None:intergenic 35.0%
CCATGAGTAGAAAAGTTATG+AGG - chr4_1:13409668-13409687 None:intergenic 35.0%
! CCTCATAACTTTTCTACTCA+TGG + chr4_1:13409665-13409684 Msa0536410:intron 35.0%
CACAAGCACTTATTCAAAGA+TGG - chr4_1:13409787-13409806 None:intergenic 35.0%
GTAAGACTGTTTAGGAGTTA+TGG - chr4_1:13409869-13409888 None:intergenic 35.0%
AAGCACTTGTAAGACTGTTT+AGG - chr4_1:13409877-13409896 None:intergenic 35.0%
ATCTAAACGAAGGGTCTATT+CGG - chr4_1:13409930-13409949 None:intergenic 35.0%
GAATTACATCAGTCATTCAC+AGG - chr4_1:13410017-13410036 None:intergenic 35.0%
AAATATTGAGGATGGAAGTG+TGG - chr4_1:13410251-13410270 None:intergenic 35.0%
AAGAAGTTAGTGATGTTTGC+AGG + chr4_1:13410289-13410308 Msa0536410:intron 35.0%
! TTTCCTTGGTGTATTCTAGT+AGG - chr4_1:13410358-13410377 None:intergenic 35.0%
! CCCTTTGAAGATACAATAAG+TGG - chr4_1:13410568-13410587 None:intergenic 35.0%
! TATCTGCTATTTGACAACAC+TGG - chr4_1:13410647-13410666 None:intergenic 35.0%
!! ATGCTATAGCATTTTAGCGT+AGG + chr4_1:13410682-13410701 Msa0536410:intron 35.0%
! CACTGTTGGACAATTTTGAA+TGG + chr4_1:13410851-13410870 Msa0536410:CDS 35.0%
! GACAATTTTGAATGGAATGC+TGG + chr4_1:13410859-13410878 Msa0536410:CDS 35.0%
ACAAATTCTAACCAGTACGA+AGG - chr4_1:13410994-13411013 None:intergenic 35.0%
AGCTATGACTAGGATTTAGA+AGG - chr4_1:13411049-13411068 None:intergenic 35.0%
! TCCTTGCTTAGTTCTTACAA+TGG - chr4_1:13411077-13411096 None:intergenic 35.0%
GATGATATTGTTCACTCCTC+AGG + chr4_1:13407402-13407421 Msa0536410:intron 40.0%
TTACTCACGAGGTAGTAATC+TGG - chr4_1:13407488-13407507 None:intergenic 40.0%
TGATTAGAGAGTTACTCACG+AGG - chr4_1:13407499-13407518 None:intergenic 40.0%
GCTCTTGAAGATGAATATGG+TGG + chr4_1:13407874-13407893 Msa0536410:CDS 40.0%
CTAATATGGGTCCCATTGAA+AGG + chr4_1:13408029-13408048 Msa0536410:intron 40.0%
CATGGAATAGGAAGAAGAAC+GGG - chr4_1:13408174-13408193 None:intergenic 40.0%
GCATGGAATAGGAAGAAGAA+CGG - chr4_1:13408175-13408194 None:intergenic 40.0%
! TTGGTGACAGAGTTAAGCAT+TGG + chr4_1:13408273-13408292 Msa0536410:CDS 40.0%
CCTTGAGTGCTATAAAGCAA+TGG - chr4_1:13408314-13408333 None:intergenic 40.0%
CCATTGCTTTATAGCACTCA+AGG + chr4_1:13408311-13408330 Msa0536410:CDS 40.0%
AGGTGGTGTGTAACTACATA+GGG - chr4_1:13408416-13408435 None:intergenic 40.0%
GGGTAACACTAAATTCTGCA+TGG + chr4_1:13408901-13408920 Msa0536410:CDS 40.0%
GCCACTATCTCAATCAAAAG+AGG + chr4_1:13408929-13408948 Msa0536410:CDS 40.0%
! TGGAATACATTGGAGAGTGT+AGG + chr4_1:13409203-13409222 Msa0536410:intron 40.0%
GAATATTGTGAAAGAGGTCC+AGG + chr4_1:13409274-13409293 Msa0536410:intron 40.0%
AGTTAGACATGACTGTGTAC+CGG - chr4_1:13409368-13409387 None:intergenic 40.0%
!! AAAACATTTGGCTTTCCACG+CGG - chr4_1:13409578-13409597 None:intergenic 40.0%
TCTCCATATGCAAGTACCTT+TGG - chr4_1:13409741-13409760 None:intergenic 40.0%
TTACAAGTGCTTGTGTCAGT+AGG + chr4_1:13409885-13409904 Msa0536410:intron 40.0%
AAGCGATCAACTCTCTTTAG+AGG + chr4_1:13410208-13410227 Msa0536410:intron 40.0%
ATCTATCCACCAGGAATTCA+AGG + chr4_1:13410332-13410351 Msa0536410:CDS 40.0%
AATATATGCAGGAGTCGATG+AGG + chr4_1:13410487-13410506 Msa0536410:intron 40.0%
!! ATGAGGTTGATGATGGCAAA+AGG + chr4_1:13410504-13410523 Msa0536410:CDS 40.0%
AACTTTGAATTGGGCAGGAA+TGG + chr4_1:13410799-13410818 Msa0536410:intron 40.0%
CAACATACACAAGTCCAAAG+CGG - chr4_1:13410894-13410913 None:intergenic 40.0%
! CAGACCTTTTACGGTATCTT+CGG - chr4_1:13410933-13410952 None:intergenic 40.0%
! ACCACAATGCAGACCTTTTA+CGG - chr4_1:13410942-13410961 None:intergenic 40.0%
ACGAAGGACCATTTCATTTG+CGG - chr4_1:13410978-13410997 None:intergenic 40.0%
AATGAAATGGTCCTTCGTAC+TGG + chr4_1:13410980-13410999 Msa0536410:exon 40.0%
AATGGCCTAAAGCTATGACT+AGG - chr4_1:13411059-13411078 None:intergenic 40.0%
GCCATTGTAAGAACTAAGCA+AGG + chr4_1:13411073-13411092 Msa0536410:three_prime_UTR 40.0%
TGATTTCTGATAACTGGCCA+AGG + chr4_1:13411106-13411125 Msa0536410:three_prime_UTR 40.0%
AGAATAGTTGGCCGCAGTAA+TGG + chr4_1:13407268-13407287 Msa0536410:five_prime_UTR 45.0%
GAATAGTTGGCCGCAGTAAT+GGG + chr4_1:13407269-13407288 Msa0536410:five_prime_UTR 45.0%
AATAGTTGGCCGCAGTAATG+GGG + chr4_1:13407270-13407289 Msa0536410:five_prime_UTR 45.0%
GTAGCGGTGGTATGAATCAA+TGG - chr4_1:13407302-13407321 None:intergenic 45.0%
TGATTCATACCACCGCTACA+AGG + chr4_1:13407303-13407322 Msa0536410:five_prime_UTR 45.0%
!! ATGAAAGTACCTTGTAGCGG+TGG - chr4_1:13407315-13407334 None:intergenic 45.0%
GTGGCCATGATGAAGGATAT+CGG + chr4_1:13407430-13407449 Msa0536410:exon 45.0%
! TTTGTTAGAGAGTGTGTCGC+TGG - chr4_1:13407977-13407996 None:intergenic 45.0%
AGCACTCAAGGTTATGGAAG+TGG + chr4_1:13408323-13408342 Msa0536410:CDS 45.0%
! ACCCATGAGATGCTCTAAGT+CGG + chr4_1:13408355-13408374 Msa0536410:CDS 45.0%
! ACCGACTTAGAGCATCTCAT+GGG - chr4_1:13408359-13408378 None:intergenic 45.0%
!! TACCGACTTAGAGCATCTCA+TGG - chr4_1:13408360-13408379 None:intergenic 45.0%
CAGGTGGTGTGTAACTACAT+AGG - chr4_1:13408417-13408436 None:intergenic 45.0%
CTGCAGCAGTAAAAGTCTAC+AGG + chr4_1:13408450-13408469 Msa0536410:CDS 45.0%
AGTCTACAGGCAGAAGTTTC+AGG + chr4_1:13408463-13408482 Msa0536410:CDS 45.0%
AAGCTATCCTGGAGAGCTTA+TGG + chr4_1:13408730-13408749 Msa0536410:intron 45.0%
!! AGGACAGAGAAGCATTGTCT+CGG + chr4_1:13408949-13408968 Msa0536410:CDS 45.0%
TAGCAGCAATGATCAAACCC+TGG - chr4_1:13409295-13409314 None:intergenic 45.0%
AAAGGGTCCTACGATTTCGT+TGG + chr4_1:13409509-13409528 Msa0536410:CDS 45.0%
!! AAACATTTGGCTTTCCACGC+GGG - chr4_1:13409577-13409596 None:intergenic 45.0%
TGGAGTTCTCATTGGTCCAA+AGG + chr4_1:13409722-13409741 Msa0536410:intron 45.0%
!! GGTCCAAAGGTACTTGCATA+TGG + chr4_1:13409735-13409754 Msa0536410:intron 45.0%
TTAGAGGAGCTAAATCGGTG+AGG - chr4_1:13410039-13410058 None:intergenic 45.0%
! TGGCTCTATATCTATCCACC+AGG + chr4_1:13410323-13410342 Msa0536410:CDS 45.0%
TCTAGTAGGCCTTGAATTCC+TGG - chr4_1:13410344-13410363 None:intergenic 45.0%
AGGCCTACTAGAATACACCA+AGG + chr4_1:13410352-13410371 Msa0536410:CDS 45.0%
! GGTCACTTGATGACAAACCA+AGG + chr4_1:13410525-13410544 Msa0536410:intron 45.0%
ATACTTTGCGTGGTCACTGT+TGG + chr4_1:13410837-13410856 Msa0536410:CDS 45.0%
GACTCCGAAGATACCGTAAA+AGG + chr4_1:13410926-13410945 Msa0536410:CDS 45.0%
ACCGTAAAAGGTCTGCATTG+TGG + chr4_1:13410938-13410957 Msa0536410:CDS 45.0%
TGGCAACATCCCCATTACTG+CGG - chr4_1:13407282-13407301 None:intergenic 50.0%
GTTCACTCCTCAGGAAGATG+TGG + chr4_1:13407411-13407430 Msa0536410:intron 50.0%
ATCATGGCCACATCTTCCTG+AGG - chr4_1:13407421-13407440 None:intergenic 50.0%
GGAAGATGTGGCCATGATGA+AGG + chr4_1:13407423-13407442 Msa0536410:intron 50.0%
TCAGGTGGAAACCTAAAGGG+AGG + chr4_1:13407649-13407668 Msa0536410:intron 50.0%
! GACTTAGAGCATCTCATGGG+TGG - chr4_1:13408356-13408375 None:intergenic 50.0%
TCGGTAGCTAACTGCAATGC+CGG + chr4_1:13408374-13408393 Msa0536410:CDS 50.0%
GGGCTCAGTACTAGAATCAC+CGG - chr4_1:13408396-13408415 None:intergenic 50.0%
CAGCGTGAGAAAGAATCAGG+TGG - chr4_1:13408433-13408452 None:intergenic 50.0%
CTGCAGCGTGAGAAAGAATC+AGG - chr4_1:13408436-13408455 None:intergenic 50.0%
!! GGACAGAGAAGCATTGTCTC+GGG + chr4_1:13408950-13408969 Msa0536410:CDS 50.0%
!! GACAGAGAAGCATTGTCTCG+GGG + chr4_1:13408951-13408970 Msa0536410:CDS 50.0%
GGATATGTACCAGAGTGCAG+GGG - chr4_1:13409422-13409441 None:intergenic 50.0%
GGGATATGTACCAGAGTGCA+GGG - chr4_1:13409423-13409442 None:intergenic 50.0%
CGTAGGACCCTTTGACCATT+AGG - chr4_1:13409502-13409521 None:intergenic 50.0%
GTGATGTTTGCAGGCTGCTT+CGG + chr4_1:13410298-13410317 Msa0536410:intron 50.0%
AGTAGGCCTTGAATTCCTGG+TGG - chr4_1:13410341-13410360 None:intergenic 50.0%
!! GGAGTCGATGAGGTTGATGA+TGG + chr4_1:13410497-13410516 Msa0536410:intron 50.0%
AATTGGGCAGGAATGGAGTG+AGG + chr4_1:13410806-13410825 Msa0536410:intron 50.0%
ATTGGGCAGGAATGGAGTGA+GGG + chr4_1:13410807-13410826 Msa0536410:intron 50.0%
AGGAATGGAGTGAGGGTGAA+GGG + chr4_1:13410814-13410833 Msa0536410:intron 50.0%
GGCATGTCCATAAGCTCTCC+AGG - chr4_1:13408740-13408759 None:intergenic 55.0%
TTCATGGAACCCCTGCACTC+TGG + chr4_1:13409410-13409429 Msa0536410:CDS 55.0%
CGGGATATGTACCAGAGTGC+AGG - chr4_1:13409424-13409443 None:intergenic 55.0%
TCCACGCGGGCAAGGAATAT+TGG - chr4_1:13409564-13409583 None:intergenic 55.0%
CAGGAATGGAGTGAGGGTGA+AGG + chr4_1:13410813-13410832 Msa0536410:intron 55.0%
GGGTGAAGGGATACTTTGCG+TGG + chr4_1:13410827-13410846 Msa0536410:CDS 55.0%
GCCAATATTCCTTGCCCGCG+TGG + chr4_1:13409560-13409579 Msa0536410:CDS 60.0%
!! TTTGGCTTTCCACGCGGGCA+AGG - chr4_1:13409572-13409591 None:intergenic 60.0%
GTTTGCAGGCTGCTTCGGAC+TGG + chr4_1:13410303-13410322 Msa0536410:intron 60.0%
GCTGGCTACACACTCCGCTT+TGG + chr4_1:13410877-13410896 Msa0536410:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 13407263 13411243 13407263 ID=Msa0536410;Name=Msa0536410
chr4_1 mRNA 13407263 13411243 13407263 ID=Msa0536410-mRNA-1;Parent=Msa0536410;Name=Msa0536410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=74|0.7|0.81|0.90|0.8|0.90|11|259|380
chr4_1 exon 13407263 13407324 13407263 ID=Msa0536410-mRNA-1:exon:4289;Parent=Msa0536410-mRNA-1
chr4_1 exon 13407424 13407499 13407424 ID=Msa0536410-mRNA-1:exon:4290;Parent=Msa0536410-mRNA-1
chr4_1 exon 13407653 13407730 13407653 ID=Msa0536410-mRNA-1:exon:4291;Parent=Msa0536410-mRNA-1
chr4_1 exon 13407830 13407917 13407830 ID=Msa0536410-mRNA-1:exon:4292;Parent=Msa0536410-mRNA-1
chr4_1 exon 13408232 13408484 13408232 ID=Msa0536410-mRNA-1:exon:4293;Parent=Msa0536410-mRNA-1
chr4_1 exon 13408879 13408994 13408879 ID=Msa0536410-mRNA-1:exon:4294;Parent=Msa0536410-mRNA-1
chr4_1 exon 13409409 13409623 13409409 ID=Msa0536410-mRNA-1:exon:4295;Parent=Msa0536410-mRNA-1
chr4_1 exon 13410174 13410202 13410174 ID=Msa0536410-mRNA-1:exon:4296;Parent=Msa0536410-mRNA-1
chr4_1 exon 13410311 13410413 13410311 ID=Msa0536410-mRNA-1:exon:4297;Parent=Msa0536410-mRNA-1
chr4_1 exon 13410498 13410525 13410498 ID=Msa0536410-mRNA-1:exon:4298;Parent=Msa0536410-mRNA-1
chr4_1 exon 13410816 13411243 13410816 ID=Msa0536410-mRNA-1:exon:4299;Parent=Msa0536410-mRNA-1
chr4_1 five_prime_UTR 13407263 13407324 13407263 ID=Msa0536410-mRNA-1:five_prime_utr;Parent=Msa0536410-mRNA-1
chr4_1 five_prime_UTR 13407424 13407435 13407424 ID=Msa0536410-mRNA-1:five_prime_utr;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13407436 13407499 13407436 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13407653 13407730 13407653 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13407830 13407917 13407830 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13408232 13408484 13408232 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13408879 13408994 13408879 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13409409 13409623 13409409 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13410174 13410202 13410174 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13410311 13410413 13410311 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13410498 13410525 13410498 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 CDS 13410816 13410984 13410816 ID=Msa0536410-mRNA-1:cds;Parent=Msa0536410-mRNA-1
chr4_1 three_prime_UTR 13410985 13411243 13410985 ID=Msa0536410-mRNA-1:three_prime_utr;Parent=Msa0536410-mRNA-1
Gene Sequence

>Msa0536410

ATGATGAAGGATATCGGATTTAATGCTTATAGGTTTTCGATCTCTTGGTCCAGATTACTACCTCGTGGAAACCTAAAGGGAGGAATTAATCAAGAAGGCGTCATATATTACAACAACCTCATAAATGAATTGATATCAAGTGGACAAACACCATTTATAACTCTATTTCACTCTGATCTCCCTCAAGCTCTTGAAGATGAATATGGTGGTTTTTTGAGTCCCAAAATTGAGCAAGATTTTGCTGATTATGCAGAAGTATGCTTCAGAGAATTTGGTGACAGAGTTAAGCATTGGATTACATTGAATGAGCCATTGCTTTATAGCACTCAAGGTTATGGAAGTGGATCATCTCCACCCATGAGATGCTCTAAGTCGGTAGCTAACTGCAATGCCGGTGATTCTAGTACTGAGCCCTATGTAGTTACACACCACCTGATTCTTTCTCACGCTGCAGCAGTAAAAGTCTACAGGCAGAAGTTTCAGAATACTCAAAAGGGTCAAATTGGGGTAACACTAAATTCTGCATGGCTTGTGCCACTATCTCAATCAAAAGAGGACAGAGAAGCATTGTCTCGGGGTCTTGCTTTTATGTATGACTGGTTCATGGAACCCCTGCACTCTGGTACATATCCCGCAGTAATAGTTAACAAAGTCAAGGAACGTTTGCCAAAGTTTTCGAGAAGTCAATTCCTAATGGTCAAAGGGTCCTACGATTTCGTTGGTTTAAACTATTACACTTCAACTTATGCTGCCAATATTCCTTGCCCGCGTGGAAAGCCAAATGTTTTTACAGACAATTGTGTTAGATTTACTACAATTGAGACCAATACTTTGCTCTTCAAAGCTGCTTCGGACTGGCTCTATATCTATCCACCAGGAATTCAAGGCCTACTAGAATACACCAAGGAAAAATTTAGCAATCCAATCATTTACATAACAGAAAATGGAGTCGATGAGGTTGATGATGGCAAAAGGAATGGAGTGAGGGTGAAGGGATACTTTGCGTGGTCACTGTTGGACAATTTTGAATGGAATGCTGGCTACACACTCCGCTTTGGACTTGTGTATGTTGATTACAAGAATGGACTCCGAAGATACCGTAAAAGGTCTGCATTGTGGTTCAAATTATTTCTCCGCAAATGA
Protein sequence

>Msa0536410

MMKDIGFNAYRFSISWSRLLPRGNLKGGINQEGVIYYNNLINELISSGQTPFITLFHSDLPQALEDEYGGFLSPKIEQDFADYAEVCFREFGDRVKHWITLNEPLLYSTQGYGSGSSPPMRCSKSVANCNAGDSSTEPYVVTHHLILSHAAAVKVYRQKFQNTQKGQIGVTLNSAWLVPLSQSKEDREALSRGLAFMYDWFMEPLHSGTYPAVIVNKVKERLPKFSRSQFLMVKGSYDFVGLNYYTSTYAANIPCPRGKPNVFTDNCVRFTTIETNTLLFKAASDWLYIYPPGIQGLLEYTKEKFSNPIIYITENGVDEVDDGKRNGVRVKGYFAWSLLDNFEWNAGYTLRFGLVYVDYKNGLRRYRKRSALWFKLFLRK*