Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036790 | KEH43136.1 | 78.029 | 619 | 66 | 6 | 376 | 954 | 545 | 1133 | 0.0 | 817 |
| Msa0036790 | KEH43136.1 | 79.293 | 594 | 50 | 5 | 1 | 543 | 17 | 588 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036790 | A0A072VNB6 | 78.029 | 619 | 66 | 6 | 376 | 954 | 545 | 1133 | 0.0 | 817 |
| Msa0036790 | A0A072VNB6 | 79.293 | 594 | 50 | 5 | 1 | 543 | 17 | 588 | 0.0 | 773 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036790 | Msa0081020 | 0.830656 | 2.597349e-55 | -8.615850e-47 |
| Msa0036790 | Msa0132000 | 0.950424 | 1.695253e-108 | -8.615850e-47 |
| Msa0036790 | Msa0191990 | 0.830146 | 3.461255e-55 | -8.615850e-47 |
| Msa0036790 | Msa0192680 | 0.842500 | 2.489946e-58 | -8.615850e-47 |
| Msa0036790 | Msa0198470 | 0.803796 | 2.938471e-49 | -8.615850e-47 |
| Msa0036790 | Msa0206450 | 0.802505 | 5.435672e-49 | -8.615850e-47 |
| Msa0036790 | Msa0269970 | 0.847029 | 1.497413e-59 | -8.615850e-47 |
| Msa0036790 | Msa0269980 | 0.933297 | 2.327244e-95 | -8.615850e-47 |
| Msa0036790 | Msa0272600 | 0.832074 | 1.163121e-55 | -8.615850e-47 |
| Msa0036790 | Msa0302560 | 0.823503 | 1.337755e-53 | -8.615850e-47 |
| Msa0036790 | Msa0312810 | 0.852807 | 3.621949e-61 | -8.615850e-47 |
| Msa0036790 | Msa0339920 | 0.807376 | 5.208919e-50 | -8.615850e-47 |
| Msa0036790 | Msa0477910 | 0.810225 | 1.281297e-50 | -8.615850e-47 |
| Msa0036790 | Msa0557930 | 0.801739 | 7.811816e-49 | -8.615850e-47 |
| Msa0036790 | Msa0581570 | 0.824806 | 6.612005e-54 | -8.615850e-47 |
| Msa0036790 | Msa0931750 | 0.851089 | 1.113364e-60 | -8.615850e-47 |
| Msa0036790 | Msa0935840 | -0.817349 | 3.454171e-52 | -8.615850e-47 |
| Msa0036790 | Msa1137210 | 0.814967 | 1.176531e-51 | -8.615850e-47 |
| Msa0036790 | Msa1162870 | 0.809837 | 1.553280e-50 | -8.615850e-47 |
| Msa0036790 | Msa1451520 | 0.846467 | 2.132543e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036790 | MtrunA17_Chr1g0193331 | 78.029 | 619 | 66 | 6 | 376 | 954 | 402 | 990 | 0.0 | 815 |
| Msa0036790 | MtrunA17_Chr1g0193331 | 82.262 | 451 | 46 | 4 | 104 | 543 | 18 | 445 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036790 | AT3G05900.2 | 72.549 | 51 | 11 | 2 | 904 | 953 | 598 | 646 | 1.79e-11 | 68.6 |
Find 191 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCACAAGTTTCACTAAA+TGG | 0.207773 | 1_1:-65580810 | Msa0036790:CDS |
| TCAAAATGGAGCGGATAATT+TGG | 0.213840 | 1_1:-65580424 | Msa0036790:CDS |
| AATGTTGTTCTGGTTCTTTC+CGG | 0.224028 | 1_1:+65581390 | None:intergenic |
| GGCTTGGCTGGAGTTTCTTT+TGG | 0.240569 | 1_1:+65580318 | None:intergenic |
| TTCTGGAATATCTTCTATCT+TGG | 0.261359 | 1_1:+65582630 | None:intergenic |
| TTGGTTTCTGTAGACTGTTC+TGG | 0.263852 | 1_1:+65581323 | None:intergenic |
| GATGCCAGTGTTTCTCTAAC+AGG | 0.266826 | 1_1:+65580477 | None:intergenic |
| TGCTTCTGAGCTGGCTTGGC+TGG | 0.271822 | 1_1:+65580306 | None:intergenic |
| TGTTTGAATGATTGAATTCC+TGG | 0.275194 | 1_1:+65581155 | None:intergenic |
| TTTGGAAGGTTCTTGGATAT+TGG | 0.282294 | 1_1:+65580336 | None:intergenic |
| CTCGCTTTCCTCCTCTTTGA+TGG | 0.284125 | 1_1:+65580851 | None:intergenic |
| CTTGGGTTGATTCTCTTCAT+TGG | 0.294084 | 1_1:+65582648 | None:intergenic |
| ATCAAATCTTTCTCCTCTTT+CGG | 0.297872 | 1_1:+65582802 | None:intergenic |
| TGCTTCTGACTCAGAGTTGT+TGG | 0.310843 | 1_1:+65581025 | None:intergenic |
| GTCTCAATATCCAAGTCTTT+TGG | 0.311504 | 1_1:+65581059 | None:intergenic |
| TACAAGTAGGTGAGGAAGTT+GGG | 0.326946 | 1_1:-65580935 | Msa0036790:CDS |
| TCAACAATTGCAATTGCATT+TGG | 0.345919 | 1_1:+65582391 | None:intergenic |
| GAAGGTTCCACCGGATTTGC+AGG | 0.347717 | 1_1:+65580771 | None:intergenic |
| ATGTTTGTCTCCTTCTTCAT+TGG | 0.349888 | 1_1:+65583308 | None:intergenic |
| TCTGGAATATCTTCTATCTT+GGG | 0.352677 | 1_1:+65582631 | None:intergenic |
| CTGCACAAGTTTCACTAAAT+GGG | 0.354600 | 1_1:-65580809 | Msa0036790:CDS |
| GGAAGTTGGGGAAACTATTA+AGG | 0.356667 | 1_1:-65580922 | Msa0036790:CDS |
| AACATTGATCCTCTGTCTAA+TGG | 0.363760 | 1_1:-65580984 | Msa0036790:CDS |
| GGGTTCTTCTTTCACTGTTT+CGG | 0.368570 | 1_1:+65582291 | None:intergenic |
| GCCTGACCTTGTGCATTGTC+AGG | 0.371395 | 1_1:+65583063 | None:intergenic |
| TGGACAGCATCAGATGCTTC+TGG | 0.372645 | 1_1:+65580627 | None:intergenic |
| TGTTCCGTTGAATGTTGTTC+TGG | 0.373987 | 1_1:+65581380 | None:intergenic |
| GAGGAGGAAACTATTCAAAA+TGG | 0.376197 | 1_1:-65580438 | Msa0036790:CDS |
| ATCAAGAGAATTAGAATTTG+AGG | 0.394623 | 1_1:-65581276 | Msa0036790:CDS |
| GGGACATTAAGGTCAAATAA+TGG | 0.398644 | 1_1:-65580179 | None:intergenic |
| TGTCTCCTTCTTCATTGGCT+AGG | 0.399098 | 1_1:+65583313 | None:intergenic |
| GAGCCTACAGAAACAGTAAA+AGG | 0.403452 | 1_1:-65581443 | Msa0036790:CDS |
| ATGTTTGTCTCCGTCTTCAT+TGG | 0.407032 | 1_1:+65583518 | None:intergenic |
| ATGTTTATCTCCATCTTCAT+TGG | 0.407920 | 1_1:+65583095 | None:intergenic |
| TCTACTTTCTCTGTTTCAGC+TGG | 0.408285 | 1_1:+65581215 | None:intergenic |
| TTATCTGCAACAGTTTCTAA+TGG | 0.409102 | 1_1:+65582826 | None:intergenic |
| TATACAGCAATTTGTGAAGC+AGG | 0.409154 | 1_1:-65583580 | Msa0036790:intron |
| GTAGCCGCATGTTCTTCTCT+TGG | 0.410790 | 1_1:+65582148 | None:intergenic |
| TTCTACAGCAATGACATCAT+TGG | 0.413723 | 1_1:+65581304 | None:intergenic |
| GCAGCATTAACCGTTGTGTT+AGG | 0.414445 | 1_1:+65580828 | None:intergenic |
| GTCTCCTTCTTCATTGGCTA+GGG | 0.415274 | 1_1:+65583314 | None:intergenic |
| TCTGGAATTGAAGATGTGTT+TGG | 0.420759 | 1_1:+65581341 | None:intergenic |
| TCAGACAACCCCTGCAAATC+CGG | 0.423774 | 1_1:-65580781 | Msa0036790:CDS |
| TCATCTTCTGTCTTTGATGA+AGG | 0.425519 | 1_1:+65583459 | None:intergenic |
| AAAGACAACAGCAGCGATAT+CGG | 0.428235 | 1_1:-65582344 | Msa0036790:CDS |
| TGAATGCTTCTGAGCTGGCT+TGG | 0.431567 | 1_1:+65580302 | None:intergenic |
| AGTTGAAGATATTGTGAAGC+AGG | 0.432467 | 1_1:-65583370 | Msa0036790:CDS |
| AAAGCCCGAGCTTGAGCCTC+TGG | 0.433641 | 1_1:-65582485 | Msa0036790:CDS |
| TCGCCTCTCTCGAGGATACT+TGG | 0.437086 | 1_1:+65580607 | None:intergenic |
| GAAAAGATTGTTGTAAAAGA+TGG | 0.441459 | 1_1:-65580735 | Msa0036790:CDS |
| GCCGAAAATAACCAAAGAAC+CGG | 0.441950 | 1_1:-65582452 | Msa0036790:CDS |
| GCCTGACAATGCACAAGGTC+AGG | 0.445015 | 1_1:-65583064 | Msa0036790:CDS |
| GAGGCCAGAGGCTCAAGCTC+GGG | 0.445083 | 1_1:+65582481 | None:intergenic |
| ATCTCCATCTTCATTGGCTA+GGG | 0.448597 | 1_1:+65583101 | None:intergenic |
| TATCTCCATCTTCATTGGCT+AGG | 0.448658 | 1_1:+65583100 | None:intergenic |
| TGTGCATCATCAACTATGTC+AGG | 0.454141 | 1_1:+65582925 | None:intergenic |
| TTGTTTGAATGCTTCTGAGC+TGG | 0.455331 | 1_1:+65580297 | None:intergenic |
| TTCAGAAACAAGTGCCGAAA+AGG | 0.455978 | 1_1:-65582512 | Msa0036790:CDS |
| GACAGAAGGTGATGAGGTTA+AGG | 0.457357 | 1_1:-65583025 | Msa0036790:CDS |
| TGAGGCCAGAGGCTCAAGCT+CGG | 0.460993 | 1_1:+65582480 | None:intergenic |
| TTCTGTCTTTGATGAAGGAG+TGG | 0.468752 | 1_1:+65583464 | None:intergenic |
| GAGACTAAGAACGACGAAGC+AGG | 0.478008 | 1_1:-65581239 | Msa0036790:CDS |
| GGCTCAACTTCAGTTGCCAC+TGG | 0.485901 | 1_1:+65582001 | None:intergenic |
| TTACTGAAGTTGAGGAAAAC+CGG | 0.486636 | 1_1:-65581409 | Msa0036790:CDS |
| ACTGAAAATCAAGAACAAAC+AGG | 0.490972 | 1_1:-65581104 | Msa0036790:CDS |
| GCTTGACCTTGTGCATTGTC+CGG | 0.493497 | 1_1:+65583486 | None:intergenic |
| CTTATCGCTGTGTCATGTAC+TGG | 0.494498 | 1_1:+65582748 | None:intergenic |
| TCTTCTTTCACTGTTTCGGT+AGG | 0.496000 | 1_1:+65582295 | None:intergenic |
| GCTTGACTTTGTGTATTGTC+CGG | 0.497113 | 1_1:+65583276 | None:intergenic |
| GAAAGAAGTTGTTGGTGATA+CGG | 0.501939 | 1_1:-65580709 | Msa0036790:CDS |
| GCAATTTGTGAAGCAGGAAA+AGG | 0.504607 | 1_1:-65583574 | Msa0036790:CDS |
| TTTGGAGAAAGAACGAATTG+AGG | 0.504817 | 1_1:-65580406 | Msa0036790:CDS |
| ATTGAATTCCTGGTTCACTT+TGG | 0.505726 | 1_1:+65581165 | None:intergenic |
| AGATATTGTGAAGCAGGAAA+AGG | 0.508365 | 1_1:-65583364 | Msa0036790:CDS |
| AGATATTGTGAACCCGGAAA+AGG | 0.509782 | 1_1:-65583151 | Msa0036790:CDS |
| GATTTCTTCCACCTTTGTCT+CGG | 0.511527 | 1_1:+65580518 | None:intergenic |
| AAGACAGCTACAATTGAAGC+AGG | 0.514361 | 1_1:-65580546 | Msa0036790:CDS |
| ACAACATTCAACGGAACAAA+GGG | 0.517659 | 1_1:-65581375 | Msa0036790:CDS |
| GTCACTAGTGAAAGCAAAGA+AGG | 0.517866 | 1_1:-65580253 | Msa0036790:CDS |
| TGAAGTTGAGCCTACAGAAA+AGG | 0.518385 | 1_1:-65581990 | Msa0036790:CDS |
| ACCTCAACTTCAGTAGCTGC+AGG | 0.519771 | 1_1:+65582091 | None:intergenic |
| GATGGCAAGAAAGAAGTTGT+TGG | 0.519983 | 1_1:-65580717 | Msa0036790:CDS |
| TTACAAGTAGGTGAGGAAGT+TGG | 0.520315 | 1_1:-65580936 | Msa0036790:CDS |
| AATTCCCTAGCCAATGAAGA+TGG | 0.523276 | 1_1:-65583105 | Msa0036790:CDS |
| TTCACATCAGATTCAGTGGA+TGG | 0.527792 | 1_1:+65582709 | None:intergenic |
| GTTGATGATGCACAAAATCC+AGG | 0.528207 | 1_1:-65582916 | Msa0036790:CDS |
| TCCTCAACTTCAGTAACCAC+AGG | 0.530922 | 1_1:+65581416 | None:intergenic |
| TTCCTTCACATCAGATTCAG+TGG | 0.531339 | 1_1:+65582705 | None:intergenic |
| AACATCACAGCAGATAGAAA+AGG | 0.534613 | 1_1:-65582683 | Msa0036790:CDS |
| TGGGGAAACTATTAAGGAAG+TGG | 0.534716 | 1_1:-65580916 | Msa0036790:CDS |
| AAACCTGTCCTCAGAGCCAA+AGG | 0.538748 | 1_1:-65580202 | Msa0036790:CDS |
| GCTTCAACTTCAGCAGCCAC+AGG | 0.539201 | 1_1:+65581911 | None:intergenic |
| TGCTGCAGAGGATGAAAAGA+AGG | 0.539585 | 1_1:-65580652 | Msa0036790:CDS |
| TATTGAAGATATTGTGAACC+CGG | 0.541127 | 1_1:-65583157 | Msa0036790:CDS |
| GACTAATCAATTTGAAGAGG+AGG | 0.541779 | 1_1:-65582551 | Msa0036790:CDS |
| TGTTGCAGATAATCCGAAAG+AGG | 0.547830 | 1_1:-65582815 | Msa0036790:CDS |
| GGCTACTGAAGTTGAGGCTA+CGG | 0.547997 | 1_1:-65582131 | Msa0036790:CDS |
| AATTCCCTAGCCAATGAAGA+AGG | 0.551922 | 1_1:-65583318 | Msa0036790:CDS |
| TTTATCTGCAGTCTCAACTT+CGG | 0.551981 | 1_1:+65582261 | None:intergenic |
| AAAGCAAAGAAGGCTATCAC+TGG | 0.552054 | 1_1:-65580243 | Msa0036790:CDS |
| GCCTCAATTTCAGTAACCAC+GGG | 0.552823 | 1_1:+65582181 | None:intergenic |
| ATCCACTGAATCTGATGTGA+AGG | 0.554156 | 1_1:-65582707 | Msa0036790:CDS |
| ATCACAAGAAATTTCACAAG+AGG | 0.555487 | 1_1:-65582422 | Msa0036790:CDS |
| ACCCGTGGTTACTGAAATTG+AGG | 0.559345 | 1_1:-65582182 | Msa0036790:CDS |
| AACAACATTCAACGGAACAA+AGG | 0.561333 | 1_1:-65581376 | Msa0036790:CDS |
| ACCTGCAGCTACTGAAGTTG+AGG | 0.561697 | 1_1:-65582092 | Msa0036790:CDS |
| GGTTCACCCTCCAAAAGACT+TGG | 0.562523 | 1_1:-65581069 | Msa0036790:CDS |
| GATGAAAACCAAAGTGAACC+AGG | 0.563084 | 1_1:-65581173 | Msa0036790:CDS |
| ACTTCAGGAGAAGGTTCCAC+CGG | 0.563751 | 1_1:+65580762 | None:intergenic |
| TTCAAACAACATTATAGCAA+AGG | 0.565058 | 1_1:-65580283 | Msa0036790:CDS |
| ACAAGTAGGTGAGGAAGTTG+GGG | 0.565814 | 1_1:-65580934 | Msa0036790:CDS |
| GAAGACTGAGGAACAGAATG+AGG | 0.566055 | 1_1:-65580571 | Msa0036790:CDS |
| TCATCCACTTCAGTAACCAC+AGG | 0.568495 | 1_1:+65581191 | None:intergenic |
| AACCTGTCCTCAGAGCCAAA+GGG | 0.568915 | 1_1:-65580201 | Msa0036790:CDS |
| GTCAACCTTCGCCTCTCTCG+AGG | 0.572008 | 1_1:+65580599 | None:intergenic |
| TTCTGTATTCGACGAAGGAG+TGG | 0.573402 | 1_1:+65583254 | None:intergenic |
| AAGGTTCCACCGGATTTGCA+GGG | 0.573924 | 1_1:+65580772 | None:intergenic |
| AGACTAAGAACGACGAAGCA+GGG | 0.578767 | 1_1:-65581238 | Msa0036790:CDS |
| AAAAGTTGTTGTTGCTGCAG+AGG | 0.578943 | 1_1:-65580664 | Msa0036790:CDS |
| GTCTCAACTTCGGTAACCAC+GGG | 0.579703 | 1_1:+65582226 | None:intergenic |
| GTCTCAACTTCGGTAACCAC+GGG | 0.579703 | 1_1:+65582271 | None:intergenic |
| AGAGGAAGAAGTGAAACCAA+AGG | 0.579767 | 1_1:-65581132 | Msa0036790:CDS |
| TGAGGAGCCAGTGAAAATTG+AGG | 0.580572 | 1_1:-65580388 | Msa0036790:CDS |
| GGAAAAGGACGAAGCTATTG+CGG | 0.580775 | 1_1:-65583349 | Msa0036790:CDS |
| AACCTCATCACCTTCTGTCG+TGG | 0.582526 | 1_1:+65583029 | None:intergenic |
| AGTATCCTCGAGAGAGGCGA+AGG | 0.587010 | 1_1:-65580604 | Msa0036790:CDS |
| TTCGGCTCTTCTGAGGCCAG+AGG | 0.587677 | 1_1:+65582469 | None:intergenic |
| TCACCTTCTGTCGTGGACGA+AGG | 0.588129 | 1_1:+65583036 | None:intergenic |
| TTCAACGGAACAAAGGGAAG+AGG | 0.592510 | 1_1:-65581369 | Msa0036790:CDS |
| TGAAGTTGAAGCTACAGAAA+CGG | 0.594350 | 1_1:-65581900 | Msa0036790:intron |
| AATTCAATCATTCAAACAAG+AGG | 0.595584 | 1_1:-65581150 | Msa0036790:CDS |
| TCCTCTGTCTAATGGAGTGG+AGG | 0.595670 | 1_1:-65580976 | Msa0036790:CDS |
| TGAACCTGTTAGAGAAACAC+TGG | 0.596965 | 1_1:-65580481 | Msa0036790:CDS |
| AGAACCAGAACAACATTCAA+CGG | 0.596995 | 1_1:-65581384 | Msa0036790:CDS |
| ACTCCTTCGTCCACGACAGA+AGG | 0.597046 | 1_1:-65583039 | Msa0036790:CDS |
| GGCTCAACTACAGTAACTGC+AGG | 0.599075 | 1_1:+65581956 | None:intergenic |
| AGAGCCTGTGGTTACTGAAG+TGG | 0.604395 | 1_1:-65581195 | Msa0036790:CDS |
| CTAAGTGAACAATTACAAGT+AGG | 0.604657 | 1_1:-65580948 | Msa0036790:CDS |
| TGATCCTCTGTCTAATGGAG+TGG | 0.604813 | 1_1:-65580979 | Msa0036790:CDS |
| TATATCTGCAGTCTCAACTT+CGG | 0.606961 | 1_1:+65582216 | None:intergenic |
| TGAGACTAATCAATTTGAAG+AGG | 0.607768 | 1_1:-65582554 | Msa0036790:CDS |
| GACAGCTACAATTGAAGCAG+GGG | 0.608684 | 1_1:-65580544 | Msa0036790:CDS |
| ACCTGTGGTTACTGAAGTTG+AGG | 0.609370 | 1_1:-65581417 | Msa0036790:CDS |
| AGCCTCAATTTCAGTAACCA+CGG | 0.610708 | 1_1:+65582180 | None:intergenic |
| TCCTCCACTCCATTAGACAG+AGG | 0.612429 | 1_1:+65580975 | None:intergenic |
| AGGTTCCACCGGATTTGCAG+GGG | 0.612836 | 1_1:+65580773 | None:intergenic |
| AATTGTTGAATCTTCAGTCG+AGG | 0.614945 | 1_1:-65582377 | Msa0036790:CDS |
| TTCATCAAAGACAGAAGATG+AGG | 0.617359 | 1_1:-65583457 | Msa0036790:intron |
| AGTCTCAACTTCGGTAACCA+CGG | 0.620579 | 1_1:+65582225 | None:intergenic |
| AGTCTCAACTTCGGTAACCA+CGG | 0.620579 | 1_1:+65582270 | None:intergenic |
| TGAACAATTACAAGTAGGTG+AGG | 0.622772 | 1_1:-65580943 | Msa0036790:CDS |
| AATTCTCTAGCCAATGAAGA+CGG | 0.623247 | 1_1:-65583528 | Msa0036790:CDS |
| AGACAAACATGATGACAAGC+CGG | 0.625194 | 1_1:-65583295 | Msa0036790:CDS |
| AGACAAACATGATGACAAGC+CGG | 0.625194 | 1_1:-65583505 | Msa0036790:CDS |
| TCTCCTTCTGTATTCGACGA+AGG | 0.626375 | 1_1:+65583249 | None:intergenic |
| ACTCCTTCGTCGAATACAGA+AGG | 0.628116 | 1_1:-65583252 | Msa0036790:CDS |
| AACAGTAAAAGGTGAACCTG+TGG | 0.629286 | 1_1:-65581432 | Msa0036790:CDS |
| TAATGGCACCATCAAAGAGG+AGG | 0.633025 | 1_1:-65580859 | Msa0036790:CDS |
| AGCAGGGGAGACCGAGACAA+AGG | 0.633613 | 1_1:-65580529 | Msa0036790:CDS |
| GGATCAACTTCAGTAACCAC+AGG | 0.633996 | 1_1:+65582046 | None:intergenic |
| TGCACAAGTTTCACTAAATG+GGG | 0.634873 | 1_1:-65580808 | Msa0036790:CDS |
| GGAAAAGGACGAAGCCATTG+CGG | 0.635122 | 1_1:-65583559 | Msa0036790:CDS |
| AAAAGACTTGGATATTGAGA+CGG | 0.635667 | 1_1:-65581057 | Msa0036790:CDS |
| ACATGCGGCTACTGAAGTTG+AGG | 0.637223 | 1_1:-65582137 | Msa0036790:CDS |
| TGGATGGTGTCTCATCATGA+TGG | 0.637874 | 1_1:+65582725 | None:intergenic |
| AACAGTAAAAGAAGAACCAG+TGG | 0.638830 | 1_1:-65582017 | Msa0036790:CDS |
| AGACAGCTACAATTGAAGCA+GGG | 0.640274 | 1_1:-65580545 | Msa0036790:CDS |
| AGGGGAGACCGAGACAAAGG+TGG | 0.643565 | 1_1:-65580526 | Msa0036790:CDS |
| GACAACCCCTGCAAATCCGG+TGG | 0.647241 | 1_1:-65580778 | Msa0036790:CDS |
| ATCTAATGGCACCATCAAAG+AGG | 0.649002 | 1_1:-65580862 | Msa0036790:CDS |
| ACCTGTCCTCAGAGCCAAAG+GGG | 0.650165 | 1_1:-65580200 | Msa0036790:CDS |
| GGAAACTATTCAAAATGGAG+CGG | 0.651455 | 1_1:-65580433 | Msa0036790:CDS |
| AACAGAGAAAGTAGAGCCTG+TGG | 0.651574 | 1_1:-65581207 | Msa0036790:CDS |
| GACAAGCCGGACAATGCACA+AGG | 0.656404 | 1_1:-65583492 | Msa0036790:CDS |
| AACTGTAAAAGACGAACCTG+TGG | 0.663286 | 1_1:-65581927 | Msa0036790:CDS |
| AACAGTAAAAGACGAACCTG+TGG | 0.668325 | 1_1:-65582062 | Msa0036790:CDS |
| TATAGTAAACAAAGAACCCG+TGG | 0.669103 | 1_1:-65582197 | Msa0036790:CDS |
| GTCCACGACAGAAGGTGATG+AGG | 0.669709 | 1_1:-65583031 | Msa0036790:CDS |
| AACAGTGAAAGAAGAACCCG+TGG | 0.675596 | 1_1:-65582287 | Msa0036790:CDS |
| TGTCCAAGTATCCTCGAGAG+AGG | 0.676889 | 1_1:-65580610 | Msa0036790:CDS |
| TAAAGTAAAAGAAGAACCCG+TGG | 0.677200 | 1_1:-65582242 | Msa0036790:CDS |
| AGAACAAACAGGTGATACAG+TGG | 0.678688 | 1_1:-65581093 | Msa0036790:CDS |
| ATCTTCAGTCGAGGCCAATG+AGG | 0.682162 | 1_1:-65582368 | Msa0036790:CDS |
| GGAGAACACTACCAGTGTCG+AGG | 0.687107 | 1_1:-65580688 | Msa0036790:CDS |
| GACAAGCCTGACAATGCACA+AGG | 0.699619 | 1_1:-65583069 | Msa0036790:CDS |
| AACACCAAGAGAAGAACATG+CGG | 0.701473 | 1_1:-65582152 | Msa0036790:CDS |
| AATTGAGGTTGAATCCACCA+AGG | 0.707557 | 1_1:-65580373 | Msa0036790:CDS |
| CCTGTCCTCAGAGCCAAAGG+GGG | 0.709648 | 1_1:-65580199 | Msa0036790:CDS |
| ACAAACAGGTGATACAGTGG+AGG | 0.715313 | 1_1:-65581090 | Msa0036790:CDS |
| GGAAAGCGAGCCTAACACAA+CGG | 0.720344 | 1_1:-65580838 | Msa0036790:CDS |
| GGTTGACATCAAGAAGACTG+AGG | 0.735500 | 1_1:-65580583 | Msa0036790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTAATAGTTAAAT+CGG | + | chr1_1:65580876-65580895 | None:intergenic | 10.0% |
| ! | ATTTGTAAGTTTGCAGAAAA+TGG | + | chr1_1:65580243-65580262 | None:intergenic | 25.0% |
| ! | GAATAAGCTAAAGAACAATA+TGG | - | chr1_1:65580266-65580285 | Msa0036790:CDS | 25.0% |
| !! | CTGAATGTTTTCTTCTATAT+TGG | - | chr1_1:65580318-65580337 | Msa0036790:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr1_1:65580466-65580485 | None:intergenic | 25.0% |
| !! | AGTGAACATTTTATGAAACA+TGG | + | chr1_1:65580783-65580802 | None:intergenic | 25.0% |
| ! | CATATATGTATCCACAAAAA+CGG | + | chr1_1:65580835-65580854 | None:intergenic | 25.0% |
| !! | ATTTCTTGTGATTCTTTTTC+CGG | + | chr1_1:65582056-65582075 | None:intergenic | 25.0% |
| ! | ATCAAGAGAATTAGAATTTG+AGG | - | chr1_1:65583210-65583229 | Msa0036790:intron | 25.0% |
| ! | AATTCAATCATTCAAACAAG+AGG | - | chr1_1:65583336-65583355 | Msa0036790:CDS | 25.0% |
| !!! | ATTAGATCCTTCACTTTTTT+CGG | + | chr1_1:65583611-65583630 | None:intergenic | 25.0% |
| ! | GAAAAGATTGTTGTAAAAGA+TGG | - | chr1_1:65583751-65583770 | Msa0036790:intron | 25.0% |
| ! | TTCAAACAACATTATAGCAA+AGG | - | chr1_1:65584203-65584222 | Msa0036790:intron | 25.0% |
| GCAAGGTTTATATTAGCAAA+AGG | + | chr1_1:65580354-65580373 | None:intergenic | 30.0% | |
| ACATAACAAGAAAACACAGA+TGG | + | chr1_1:65580387-65580406 | None:intergenic | 30.0% | |
| GACATTAATCACTGATATGA+TGG | + | chr1_1:65580444-65580463 | None:intergenic | 30.0% | |
| ATTTCGATATAAGCTATCAC+TGG | - | chr1_1:65580565-65580584 | Msa0036790:CDS | 30.0% | |
| TTTCGATATAAGCTATCACT+GGG | - | chr1_1:65580566-65580585 | Msa0036790:CDS | 30.0% | |
| ATCCTAACATATCCATAGTT+TGG | - | chr1_1:65580704-65580723 | Msa0036790:CDS | 30.0% | |
| AAACAGTTTCACTGAAACTA+AGG | + | chr1_1:65580739-65580758 | None:intergenic | 30.0% | |
| !! | TTTCAAAACATCCGTTTTTG+TGG | - | chr1_1:65580821-65580840 | Msa0036790:CDS | 30.0% |
| ! | AGAATTAATCTTTTCCGCAA+TGG | + | chr1_1:65580944-65580963 | None:intergenic | 30.0% |
| TTCAATAGAAACCTTCAATG+TGG | + | chr1_1:65581316-65581335 | None:intergenic | 30.0% | |
| TATTGAAGATATTGTGAACC+CGG | - | chr1_1:65581329-65581348 | Msa0036790:CDS | 30.0% | |
| ATGTTTATCTCCATCTTCAT+TGG | + | chr1_1:65581394-65581413 | None:intergenic | 30.0% | |
| AGAAAAAGAAGATGAAGTGA+AGG | - | chr1_1:65581596-65581615 | Msa0036790:intron | 30.0% | |
| TTATCTGCAACAGTTTCTAA+TGG | + | chr1_1:65581663-65581682 | None:intergenic | 30.0% | |
| ATCAAATCTTTCTCCTCTTT+CGG | + | chr1_1:65581687-65581706 | None:intergenic | 30.0% | |
| ! | TCTGGAATATCTTCTATCTT+GGG | + | chr1_1:65581858-65581877 | None:intergenic | 30.0% |
| !! | TTCTGGAATATCTTCTATCT+TGG | + | chr1_1:65581859-65581878 | None:intergenic | 30.0% |
| TGAGACTAATCAATTTGAAG+AGG | - | chr1_1:65581932-65581951 | Msa0036790:CDS | 30.0% | |
| ATCACAAGAAATTTCACAAG+AGG | - | chr1_1:65582064-65582083 | Msa0036790:CDS | 30.0% | |
| TCAACAATTGCAATTGCATT+TGG | + | chr1_1:65582098-65582117 | None:intergenic | 30.0% | |
| !!! | TCTTCTTTTACTGTTTCTGT+AGG | + | chr1_1:65582464-65582483 | None:intergenic | 30.0% |
| TGTTTGAATGATTGAATTCC+TGG | + | chr1_1:65583334-65583353 | None:intergenic | 30.0% | |
| ! | TGATTTTCAGTTTCTTCCTT+TGG | + | chr1_1:65583373-65583392 | None:intergenic | 30.0% |
| ACTGAAAATCAAGAACAAAC+AGG | - | chr1_1:65583382-65583401 | Msa0036790:intron | 30.0% | |
| AAAAGACTTGGATATTGAGA+CGG | - | chr1_1:65583429-65583448 | Msa0036790:intron | 30.0% | |
| CTAAGTGAACAATTACAAGT+AGG | - | chr1_1:65583538-65583557 | Msa0036790:CDS | 30.0% | |
| GAAAAAAGTGAAGGATCTAA+TGG | - | chr1_1:65583610-65583629 | Msa0036790:intron | 30.0% | |
| ! | ACAATCTTTTCTTCAACTTC+AGG | + | chr1_1:65583742-65583761 | None:intergenic | 30.0% |
| ATCTAAATTCGAAAAAGACG+AGG | - | chr1_1:65584029-65584048 | Msa0036790:intron | 30.0% | |
| TAACAAGAAAACACAGATGG+AGG | + | chr1_1:65580384-65580403 | None:intergenic | 35.0% | |
| TCAGTGATTAATGTCCTGTT+TGG | - | chr1_1:65580449-65580468 | Msa0036790:CDS | 35.0% | |
| AATAAGCCGAGAACAACTTA+TGG | - | chr1_1:65580599-65580618 | Msa0036790:CDS | 35.0% | |
| ACATCTCCATAAGTTGTTCT+CGG | + | chr1_1:65580608-65580627 | None:intergenic | 35.0% | |
| TATACAGCAATTTGTGAAGC+AGG | - | chr1_1:65580906-65580925 | Msa0036790:CDS | 35.0% | |
| AATTCTCTAGCCAATGAAGA+CGG | - | chr1_1:65580958-65580977 | Msa0036790:CDS | 35.0% | |
| TCATCTTCTGTCTTTGATGA+AGG | + | chr1_1:65581030-65581049 | None:intergenic | 35.0% | |
| TTCATCAAAGACAGAAGATG+AGG | - | chr1_1:65581029-65581048 | Msa0036790:CDS | 35.0% | |
| ! | TGATGATTCTTCAGCATTGA+AGG | - | chr1_1:65581089-65581108 | Msa0036790:CDS | 35.0% |
| AGTTGAAGATATTGTGAAGC+AGG | - | chr1_1:65581116-65581135 | Msa0036790:CDS | 35.0% | |
| AGATATTGTGAAGCAGGAAA+AGG | - | chr1_1:65581122-65581141 | Msa0036790:CDS | 35.0% | |
| ATGTTTGTCTCCTTCTTCAT+TGG | + | chr1_1:65581181-65581200 | None:intergenic | 35.0% | |
| TGATGATTCTTCCACATTGA+AGG | - | chr1_1:65581302-65581321 | Msa0036790:CDS | 35.0% | |
| ! | TCATCTTCTTTTTCTACACC+TGG | + | chr1_1:65581591-65581610 | None:intergenic | 35.0% |
| AACATCACAGCAGATAGAAA+AGG | - | chr1_1:65581803-65581822 | Msa0036790:intron | 35.0% | |
| ! | TTTTCAATGGTTTCAGCTTC+TGG | + | chr1_1:65581876-65581895 | None:intergenic | 35.0% |
| !! | GGTGTCAGATGATTTTTCAA+TGG | + | chr1_1:65581889-65581908 | None:intergenic | 35.0% |
| GACTAATCAATTTGAAGAGG+AGG | - | chr1_1:65581935-65581954 | Msa0036790:CDS | 35.0% | |
| !! | TCCGGTTCTTTGGTTATTTT+CGG | + | chr1_1:65582038-65582057 | None:intergenic | 35.0% |
| ! | TGATTCTTTTTCCGGTTCTT+TGG | + | chr1_1:65582048-65582067 | None:intergenic | 35.0% |
| AATTGTTGAATCTTCAGTCG+AGG | - | chr1_1:65582109-65582128 | Msa0036790:CDS | 35.0% | |
| TTTATCTGCAGTCTCAACTT+CGG | + | chr1_1:65582228-65582247 | None:intergenic | 35.0% | |
| TAAAGTAAAAGAAGAACCCG+TGG | - | chr1_1:65582244-65582263 | Msa0036790:CDS | 35.0% | |
| TATATCTGCAGTCTCAACTT+CGG | + | chr1_1:65582273-65582292 | None:intergenic | 35.0% | |
| TATAGTAAACAAAGAACCCG+TGG | - | chr1_1:65582289-65582308 | Msa0036790:CDS | 35.0% | |
| AACAGTAAAAGAAGAACCAG+TGG | - | chr1_1:65582469-65582488 | Msa0036790:CDS | 35.0% | |
| ! | TCGTCTTTTACCTTTTCTGT+AGG | + | chr1_1:65582509-65582528 | None:intergenic | 35.0% |
| ! | TCGTCTTTTACAGTTTCTGT+AGG | + | chr1_1:65582554-65582573 | None:intergenic | 35.0% |
| TGAAGTTGAAGCTACAGAAA+CGG | - | chr1_1:65582586-65582605 | Msa0036790:CDS | 35.0% | |
| TGAAGTTGAAGCTACAGAAA+CGG | - | chr1_1:65582586-65582605 | Msa0036790:CDS | 35.0% | |
| ! | TGAAGTTGATCCTACAGAAA+CGG | - | chr1_1:65582451-65582470 | Msa0036790:CDS | 35.0% |
| ! | TCTTCTTTTACCGTTTCTGT+AGG | + | chr1_1:65582599-65582618 | None:intergenic | 35.0% |
| ! | TGAAGTTGATCCTACAGAAA+CGG | - | chr1_1:65582451-65582470 | Msa0036790:CDS | 35.0% |
| ! | TCTTCTTTTACCGTTTCTGT+AGG | + | chr1_1:65582599-65582618 | None:intergenic | 35.0% |
| AACAGTAAAAGAAGAACACG+TGG | - | chr1_1:65582874-65582893 | Msa0036790:CDS | 35.0% | |
| !!! | TCGACTTTTACTGTTTCTGT+TGG | + | chr1_1:65582689-65582708 | None:intergenic | 35.0% |
| ! | TGAAGTTGATCCTACAGAAA+CGG | - | chr1_1:65582451-65582470 | Msa0036790:CDS | 35.0% |
| ! | TCTTCTTTTACCGTTTCTGT+AGG | + | chr1_1:65582599-65582618 | None:intergenic | 35.0% |
| TGAAGTTCAAGCTACAGAAA+CGG | - | chr1_1:65582991-65583010 | Msa0036790:CDS | 35.0% | |
| !!! | TCACCTTTTACTGTTTCTGT+AGG | + | chr1_1:65583049-65583068 | None:intergenic | 35.0% |
| TTACTGAAGTTGAGGAAAAC+CGG | - | chr1_1:65583077-65583096 | Msa0036790:CDS | 35.0% | |
| !! | AATGTTGTTCTGGTTCTTTC+CGG | + | chr1_1:65583099-65583118 | None:intergenic | 35.0% |
| AGAACCAGAACAACATTCAA+CGG | - | chr1_1:65583102-65583121 | Msa0036790:CDS | 35.0% | |
| AACAACATTCAACGGAACAA+AGG | - | chr1_1:65583110-65583129 | Msa0036790:CDS | 35.0% | |
| ACAACATTCAACGGAACAAA+GGG | - | chr1_1:65583111-65583130 | Msa0036790:CDS | 35.0% | |
| ! | TCTGGAATTGAAGATGTGTT+TGG | + | chr1_1:65583148-65583167 | None:intergenic | 35.0% |
| TTCTACAGCAATGACATCAT+TGG | + | chr1_1:65583185-65583204 | None:intergenic | 35.0% | |
| ATTGAATTCCTGGTTCACTT+TGG | + | chr1_1:65583324-65583343 | None:intergenic | 35.0% | |
| ! | CAATATCCAAGTCTTTTGGA+GGG | + | chr1_1:65583426-65583445 | None:intergenic | 35.0% |
| ! | TCAATATCCAAGTCTTTTGG+AGG | + | chr1_1:65583427-65583446 | None:intergenic | 35.0% |
| ! | GTCTCAATATCCAAGTCTTT+TGG | + | chr1_1:65583430-65583449 | None:intergenic | 35.0% |
| AACATTGATCCTCTGTCTAA+TGG | - | chr1_1:65583502-65583521 | Msa0036790:CDS | 35.0% | |
| TGAACAATTACAAGTAGGTG+AGG | - | chr1_1:65583543-65583562 | Msa0036790:CDS | 35.0% | |
| CTGCACAAGTTTCACTAAAT+GGG | - | chr1_1:65583677-65583696 | Msa0036790:intron | 35.0% | |
| TGCACAAGTTTCACTAAATG+GGG | - | chr1_1:65583678-65583697 | Msa0036790:intron | 35.0% | |
| ! | TTTTCTTCAACTTCAGGAGA+AGG | + | chr1_1:65583736-65583755 | None:intergenic | 35.0% |
| !! | GAAAGAAGTTGTTGGTGATA+CGG | - | chr1_1:65583777-65583796 | Msa0036790:intron | 35.0% |
| TAAATTCGAAAAAGACGAGG+AGG | - | chr1_1:65584032-65584051 | Msa0036790:intron | 35.0% | |
| GAGGAGGAAACTATTCAAAA+TGG | - | chr1_1:65584048-65584067 | Msa0036790:intron | 35.0% | |
| GGAAACTATTCAAAATGGAG+CGG | - | chr1_1:65584053-65584072 | Msa0036790:intron | 35.0% | |
| TCAAAATGGAGCGGATAATT+TGG | - | chr1_1:65584062-65584081 | Msa0036790:intron | 35.0% | |
| TTTGGAGAAAGAACGAATTG+AGG | - | chr1_1:65584080-65584099 | Msa0036790:intron | 35.0% | |
| ! | GATTCAACCTCAATTTTCAC+TGG | + | chr1_1:65584108-65584127 | None:intergenic | 35.0% |
| ! | TGTTGTATCATTTTCCTTGG+TGG | + | chr1_1:65584130-65584149 | None:intergenic | 35.0% |
| !!! | TGGTGTTGTATCATTTTCCT+TGG | + | chr1_1:65584133-65584152 | None:intergenic | 35.0% |
| TTTGGAAGGTTCTTGGATAT+TGG | + | chr1_1:65584153-65584172 | None:intergenic | 35.0% | |
| !! | AGTTTCTTTTGGAAGGTTCT+TGG | + | chr1_1:65584160-65584179 | None:intergenic | 35.0% |
| GGCCAAACTATGGATATGTT+AGG | + | chr1_1:65580709-65580728 | None:intergenic | 40.0% | |
| GCAATTTGTGAAGCAGGAAA+AGG | - | chr1_1:65580912-65580931 | Msa0036790:CDS | 40.0% | |
| ATGTTTGTCTCCGTCTTCAT+TGG | + | chr1_1:65580971-65580990 | None:intergenic | 40.0% | |
| AGACAAACATGATGACAAGC+CGG | - | chr1_1:65580981-65581000 | Msa0036790:CDS | 40.0% | |
| TTCTGTCTTTGATGAAGGAG+TGG | + | chr1_1:65581025-65581044 | None:intergenic | 40.0% | |
| AAAGACAGAAGATGAGGTGA+AGG | - | chr1_1:65581035-65581054 | Msa0036790:CDS | 40.0% | |
| TGCAGCAGAAGAGATTGAAA+AGG | - | chr1_1:65581065-65581084 | Msa0036790:CDS | 40.0% | |
| AATTCCCTAGCCAATGAAGA+AGG | - | chr1_1:65581168-65581187 | Msa0036790:CDS | 40.0% | |
| AGACAAACATGATGACAAGC+CGG | - | chr1_1:65580981-65581000 | Msa0036790:CDS | 40.0% | |
| GCTTGACTTTGTGTATTGTC+CGG | + | chr1_1:65581213-65581232 | None:intergenic | 40.0% | |
| TACAGAAGGAGATGAAGTGA+AGG | - | chr1_1:65581248-65581267 | Msa0036790:CDS | 40.0% | |
| AGATATTGTGAACCCGGAAA+AGG | - | chr1_1:65581335-65581354 | Msa0036790:CDS | 40.0% | |
| AATTCCCTAGCCAATGAAGA+TGG | - | chr1_1:65581168-65581187 | Msa0036790:CDS | 40.0% | |
| ! | ATCTCCATCTTCATTGGCTA+GGG | + | chr1_1:65581388-65581407 | None:intergenic | 40.0% |
| ! | TATCTCCATCTTCATTGGCT+AGG | + | chr1_1:65581389-65581408 | None:intergenic | 40.0% |
| TGTGCATCATCAACTATGTC+AGG | + | chr1_1:65581564-65581583 | None:intergenic | 40.0% | |
| !! | GTTGATGATGCACAAAATCC+AGG | - | chr1_1:65581570-65581589 | Msa0036790:intron | 40.0% |
| TGTTGCAGATAATCCGAAAG+AGG | - | chr1_1:65581671-65581690 | Msa0036790:intron | 40.0% | |
| TTCACATCAGATTCAGTGGA+TGG | + | chr1_1:65581780-65581799 | None:intergenic | 40.0% | |
| ATCCACTGAATCTGATGTGA+AGG | - | chr1_1:65581779-65581798 | Msa0036790:intron | 40.0% | |
| TTCCTTCACATCAGATTCAG+TGG | + | chr1_1:65581784-65581803 | None:intergenic | 40.0% | |
| !! | CTTGGGTTGATTCTCTTCAT+TGG | + | chr1_1:65581841-65581860 | None:intergenic | 40.0% |
| !! | CGCATCACTTGATTTTTCAG+TGG | + | chr1_1:65581910-65581929 | None:intergenic | 40.0% |
| !! | TTCAGAAACAAGTGCCGAAA+AGG | - | chr1_1:65581974-65581993 | Msa0036790:CDS | 40.0% |
| GCCGAAAATAACCAAAGAAC+CGG | - | chr1_1:65582034-65582053 | Msa0036790:CDS | 40.0% | |
| ! | TGCTGTTGTCTTTTCCTCAT+TGG | + | chr1_1:65582135-65582154 | None:intergenic | 40.0% |
| AAAGACAACAGCAGCGATAT+CGG | - | chr1_1:65582142-65582161 | Msa0036790:CDS | 40.0% | |
| ! | AGGCTCTACTTCGATGTTTT+TGG | + | chr1_1:65582174-65582193 | None:intergenic | 40.0% |
| TCTTCTTTCACTGTTTCGGT+AGG | + | chr1_1:65582194-65582213 | None:intergenic | 40.0% | |
| GGGTTCTTCTTTCACTGTTT+CGG | + | chr1_1:65582198-65582217 | None:intergenic | 40.0% | |
| AGCCTCAATTTCAGTAACCA+CGG | + | chr1_1:65582309-65582328 | None:intergenic | 40.0% | |
| AACACCAAGAGAAGAACATG+CGG | - | chr1_1:65582334-65582353 | Msa0036790:CDS | 40.0% | |
| ! | GGTTCGTCTTTTACTGTTTC+TGG | + | chr1_1:65582422-65582441 | None:intergenic | 40.0% |
| AACAGTAAAAGACGAACCTG+TGG | - | chr1_1:65582424-65582443 | Msa0036790:CDS | 40.0% | |
| TGAAGTTGAGCCTACAGAAA+AGG | - | chr1_1:65582496-65582515 | Msa0036790:CDS | 40.0% | |
| AACTGTAAAAGACGAACCTG+TGG | - | chr1_1:65582559-65582578 | Msa0036790:CDS | 40.0% | |
| AACGGTAAAAGAAGAACCTG+TGG | - | chr1_1:65582604-65582623 | Msa0036790:CDS | 40.0% | |
| AACAGTAAAAGTCGAACCTG+TGG | - | chr1_1:65582694-65582713 | Msa0036790:CDS | 40.0% | |
| AACGGTAAAAGAAGAACCTG+TGG | - | chr1_1:65582604-65582623 | Msa0036790:CDS | 40.0% | |
| TGTAGTTGAGCCTACAGAAA+CGG | - | chr1_1:65582541-65582560 | Msa0036790:CDS | 40.0% | |
| ! | TCGTCTTTTACCGTTTCTGT+AGG | + | chr1_1:65582779-65582798 | None:intergenic | 40.0% |
| GGATCAACTTCAGTAACTAC+AGG | + | chr1_1:65582803-65582822 | None:intergenic | 40.0% | |
| GAAACGGTAAAAGAAGAAGC+CGG | - | chr1_1:65582647-65582666 | Msa0036790:CDS | 40.0% | |
| AAACGGTAAAAGAAGAAGCC+GGG | - | chr1_1:65582828-65582847 | Msa0036790:CDS | 40.0% | |
| AACAGTAAAAGTCGAACCTG+TGG | - | chr1_1:65582694-65582713 | Msa0036790:CDS | 40.0% | |
| AACGGTAAAAGAAGAACCTG+TGG | - | chr1_1:65582604-65582623 | Msa0036790:CDS | 40.0% | |
| GAGCCTACAGAAACAGTAAA+AGG | - | chr1_1:65583043-65583062 | Msa0036790:CDS | 40.0% | |
| AACAGTAAAAGGTGAACCTG+TGG | - | chr1_1:65583054-65583073 | Msa0036790:CDS | 40.0% | |
| TGTTCCGTTGAATGTTGTTC+TGG | + | chr1_1:65583109-65583128 | None:intergenic | 40.0% | |
| TTGGTTTCTGTAGACTGTTC+TGG | + | chr1_1:65583166-65583185 | None:intergenic | 40.0% | |
| TCTACTTTCTCTGTTTCAGC+TGG | + | chr1_1:65583274-65583293 | None:intergenic | 40.0% | |
| GATGAAAACCAAAGTGAACC+AGG | - | chr1_1:65583313-65583332 | Msa0036790:CDS | 40.0% | |
| AGAGGAAGAAGTGAAACCAA+AGG | - | chr1_1:65583354-65583373 | Msa0036790:CDS | 40.0% | |
| AGAACAAACAGGTGATACAG+TGG | - | chr1_1:65583393-65583412 | Msa0036790:intron | 40.0% | |
| TTACAAGTAGGTGAGGAAGT+TGG | - | chr1_1:65583550-65583569 | Msa0036790:CDS | 40.0% | |
| TACAAGTAGGTGAGGAAGTT+GGG | - | chr1_1:65583551-65583570 | Msa0036790:CDS | 40.0% | |
| GGAAGTTGGGGAAACTATTA+AGG | - | chr1_1:65583564-65583583 | Msa0036790:CDS | 40.0% | |
| TGGGGAAACTATTAAGGAAG+TGG | - | chr1_1:65583570-65583589 | Msa0036790:CDS | 40.0% | |
| !!! | ACTTTTTTCGGTTGCTTGCT+CGG | + | chr1_1:65583599-65583618 | None:intergenic | 40.0% |
| CAAGCAACCGAAAAAAGTGA+AGG | - | chr1_1:65583601-65583620 | Msa0036790:intron | 40.0% | |
| ATCTAATGGCACCATCAAAG+AGG | - | chr1_1:65583624-65583643 | Msa0036790:intron | 40.0% | |
| GCTGCACAAGTTTCACTAAA+TGG | - | chr1_1:65583676-65583695 | Msa0036790:intron | 40.0% | |
| GATGGCAAGAAAGAAGTTGT+TGG | - | chr1_1:65583769-65583788 | Msa0036790:intron | 40.0% | |
| !! | AACAACTTTTTCCTCGACAC+TGG | + | chr1_1:65583812-65583831 | None:intergenic | 40.0% |
| ! | AAAAGTTGTTGTTGCTGCAG+AGG | - | chr1_1:65583822-65583841 | Msa0036790:intron | 40.0% |
| AAGACAGCTACAATTGAAGC+AGG | - | chr1_1:65583940-65583959 | Msa0036790:intron | 40.0% | |
| AGACAGCTACAATTGAAGCA+GGG | - | chr1_1:65583941-65583960 | Msa0036790:intron | 40.0% | |
| GATTTCTTCCACCTTTGTCT+CGG | + | chr1_1:65583971-65583990 | None:intergenic | 40.0% | |
| TGAACCTGTTAGAGAAACAC+TGG | - | chr1_1:65584005-65584024 | Msa0036790:intron | 40.0% | |
| AATTGAGGTTGAATCCACCA+AGG | - | chr1_1:65584113-65584132 | Msa0036790:intron | 40.0% | |
| TTGTTTGAATGCTTCTGAGC+TGG | + | chr1_1:65584192-65584211 | None:intergenic | 40.0% | |
| GTCACTAGTGAAAGCAAAGA+AGG | - | chr1_1:65584233-65584252 | Msa0036790:intron | 40.0% | |
| AAAGCAAAGAAGGCTATCAC+TGG | - | chr1_1:65584243-65584262 | Msa0036790:intron | 40.0% | |
| CACTGAAACTAAGGAGCTCA+TGG | + | chr1_1:65580730-65580749 | None:intergenic | 45.0% | |
| ATCGGTAGTGCTTACTGAAG+AGG | + | chr1_1:65580858-65580877 | None:intergenic | 45.0% | |
| GGAAAAGGACGAAGCTATTG+CGG | - | chr1_1:65581137-65581156 | Msa0036790:CDS | 45.0% | |
| ! | GTCTCCTTCTTCATTGGCTA+GGG | + | chr1_1:65581175-65581194 | None:intergenic | 45.0% |
| ! | TGTCTCCTTCTTCATTGGCT+AGG | + | chr1_1:65581176-65581195 | None:intergenic | 45.0% |
| TTCTGTATTCGACGAAGGAG+TGG | + | chr1_1:65581235-65581254 | None:intergenic | 45.0% | |
| ACTCCTTCGTCGAATACAGA+AGG | - | chr1_1:65581234-65581253 | Msa0036790:CDS | 45.0% | |
| TCTCCTTCTGTATTCGACGA+AGG | + | chr1_1:65581240-65581259 | None:intergenic | 45.0% | |
| ! | CAATAGCTTCGTCCTTTTCC+GGG | + | chr1_1:65581137-65581156 | None:intergenic | 45.0% |
| ! | GCAATAGCTTCGTCCTTTTC+CGG | + | chr1_1:65581138-65581157 | None:intergenic | 45.0% |
| GACAGAAGGTGATGAGGTTA+AGG | - | chr1_1:65581461-65581480 | Msa0036790:intron | 45.0% | |
| !!! | GTTTTTTCTGCAGCAACAGC+AGG | + | chr1_1:65581627-65581646 | None:intergenic | 45.0% |
| CTTATCGCTGTGTCATGTAC+TGG | + | chr1_1:65581741-65581760 | None:intergenic | 45.0% | |
| TGGATGGTGTCTCATCATGA+TGG | + | chr1_1:65581764-65581783 | None:intergenic | 45.0% | |
| ! | CTCGGGCTTTTCTTCCTTTT+CGG | + | chr1_1:65581991-65582010 | None:intergenic | 45.0% |
| !! | GGTTATTTTCGGCTCTTCTG+AGG | + | chr1_1:65582027-65582046 | None:intergenic | 45.0% |
| AACAGTGAAAGAAGAACCCG+TGG | - | chr1_1:65582199-65582218 | Msa0036790:CDS | 45.0% | |
| AGTCTCAACTTCGGTAACCA+CGG | + | chr1_1:65582219-65582238 | None:intergenic | 45.0% | |
| AGTCTCAACTTCGGTAACCA+CGG | + | chr1_1:65582219-65582238 | None:intergenic | 45.0% | |
| ACCCGTGGTTACTGAAATTG+AGG | - | chr1_1:65582304-65582323 | Msa0036790:CDS | 45.0% | |
| GCCTCAATTTCAGTAACCAC+GGG | + | chr1_1:65582308-65582327 | None:intergenic | 45.0% | |
| GGATCAACTTCAGTAACCAC+AGG | + | chr1_1:65582443-65582462 | None:intergenic | 45.0% | |
| GGATCAACTTCAGTAACCAC+AGG | + | chr1_1:65582443-65582462 | None:intergenic | 45.0% | |
| AACGGTAAAAGAAGAAGCCG+GGG | - | chr1_1:65582829-65582848 | Msa0036790:CDS | 45.0% | |
| GGATCAACTTCAGTAACCAC+AGG | + | chr1_1:65582443-65582462 | None:intergenic | 45.0% | |
| AACGGTAAAAGAAGAAGCCG+TGG | - | chr1_1:65582829-65582848 | Msa0036790:CDS | 45.0% | |
| AGCTTGAACTTCAGTAGCCA+CGG | + | chr1_1:65582984-65583003 | None:intergenic | 45.0% | |
| ACCTGTGGTTACTGAAGTTG+AGG | - | chr1_1:65582439-65582458 | Msa0036790:CDS | 45.0% | |
| TCCTCAACTTCAGTAACCAC+AGG | + | chr1_1:65583073-65583092 | None:intergenic | 45.0% | |
| TTCAACGGAACAAAGGGAAG+AGG | - | chr1_1:65583117-65583136 | Msa0036790:CDS | 45.0% | |
| AGACTAAGAACGACGAAGCA+GGG | - | chr1_1:65583248-65583267 | Msa0036790:CDS | 45.0% | |
| AACAGAGAAAGTAGAGCCTG+TGG | - | chr1_1:65583279-65583298 | Msa0036790:CDS | 45.0% | |
| TCATCCACTTCAGTAACCAC+AGG | + | chr1_1:65583298-65583317 | None:intergenic | 45.0% | |
| ACAAACAGGTGATACAGTGG+AGG | - | chr1_1:65583396-65583415 | Msa0036790:intron | 45.0% | |
| TGCTTCTGACTCAGAGTTGT+TGG | + | chr1_1:65583464-65583483 | None:intergenic | 45.0% | |
| TGATCCTCTGTCTAATGGAG+TGG | - | chr1_1:65583507-65583526 | Msa0036790:CDS | 45.0% | |
| ACAAGTAGGTGAGGAAGTTG+GGG | - | chr1_1:65583552-65583571 | Msa0036790:CDS | 45.0% | |
| !!! | CTTTTTTCGGTTGCTTGCTC+GGG | + | chr1_1:65583598-65583617 | None:intergenic | 45.0% |
| TAATGGCACCATCAAAGAGG+AGG | - | chr1_1:65583627-65583646 | Msa0036790:intron | 45.0% | |
| GCAGCATTAACCGTTGTGTT+AGG | + | chr1_1:65583661-65583680 | None:intergenic | 45.0% | |
| TGCTGCAGAGGATGAAAAGA+AGG | - | chr1_1:65583834-65583853 | Msa0036790:intron | 45.0% | |
| GGTTGACATCAAGAAGACTG+AGG | - | chr1_1:65583903-65583922 | Msa0036790:intron | 45.0% | |
| GAAGACTGAGGAACAGAATG+AGG | - | chr1_1:65583915-65583934 | Msa0036790:intron | 45.0% | |
| GACAGCTACAATTGAAGCAG+GGG | - | chr1_1:65583942-65583961 | Msa0036790:intron | 45.0% | |
| GATGCCAGTGTTTCTCTAAC+AGG | + | chr1_1:65584012-65584031 | None:intergenic | 45.0% | |
| TGAGGAGCCAGTGAAAATTG+AGG | - | chr1_1:65584098-65584117 | Msa0036790:intron | 45.0% | |
| ! | TGGCTGGAGTTTCTTTTGGA+AGG | + | chr1_1:65584167-65584186 | None:intergenic | 45.0% |
| TTGACCTTAATGTCCCCCTT+TGG | + | chr1_1:65584303-65584322 | None:intergenic | 45.0% | |
| CAGATGGAGGAATCTGTGCA+AGG | + | chr1_1:65580371-65580390 | None:intergenic | 50.0% | |
| AGGAGCTCATGGCCAAACTA+TGG | + | chr1_1:65580719-65580738 | None:intergenic | 50.0% | |
| GGAAAAGGACGAAGCCATTG+CGG | - | chr1_1:65580927-65580946 | Msa0036790:CDS | 50.0% | |
| GCTTGACCTTGTGCATTGTC+CGG | + | chr1_1:65581003-65581022 | None:intergenic | 50.0% | |
| TTGCAGCAGGAGAGATCGAA+AGG | - | chr1_1:65581277-65581296 | Msa0036790:CDS | 50.0% | |
| GACAAGCCTGACAATGCACA+AGG | - | chr1_1:65581417-65581436 | Msa0036790:CDS | 50.0% | |
| AACCTCATCACCTTCTGTCG+TGG | + | chr1_1:65581460-65581479 | None:intergenic | 50.0% | |
| ATCTTCAGTCGAGGCCAATG+AGG | - | chr1_1:65582118-65582137 | Msa0036790:CDS | 50.0% | |
| GTCTCAACTTCGGTAACCAC+GGG | + | chr1_1:65582218-65582237 | None:intergenic | 50.0% | |
| GTCTCAACTTCGGTAACCAC+GGG | + | chr1_1:65582218-65582237 | None:intergenic | 50.0% | |
| GTAGCCGCATGTTCTTCTCT+TGG | + | chr1_1:65582341-65582360 | None:intergenic | 50.0% | |
| ACATGCGGCTACTGAAGTTG+AGG | - | chr1_1:65582349-65582368 | Msa0036790:CDS | 50.0% | |
| GGCTACTGAAGTTGAGGCTA+CGG | - | chr1_1:65582355-65582374 | Msa0036790:CDS | 50.0% | |
| ACCTGCAGCTACTGAAGTTG+AGG | - | chr1_1:65582394-65582413 | Msa0036790:CDS | 50.0% | |
| ACCTCAACTTCAGTAGCTGC+AGG | + | chr1_1:65582398-65582417 | None:intergenic | 50.0% | |
| GGCTCAACTACAGTAACTGC+AGG | + | chr1_1:65582533-65582552 | None:intergenic | 50.0% | |
| AGCTTCAACTTCAGTAGCCC+CGG | + | chr1_1:65582849-65582868 | None:intergenic | 50.0% | |
| GAGACTAAGAACGACGAAGC+AGG | - | chr1_1:65583247-65583266 | Msa0036790:CDS | 50.0% | |
| AGAGCCTGTGGTTACTGAAG+TGG | - | chr1_1:65583291-65583310 | Msa0036790:CDS | 50.0% | |
| GGTTCACCCTCCAAAAGACT+TGG | - | chr1_1:65583417-65583436 | Msa0036790:intron | 50.0% | |
| TCCTCTGTCTAATGGAGTGG+AGG | - | chr1_1:65583510-65583529 | Msa0036790:CDS | 50.0% | |
| TCCTCCACTCCATTAGACAG+AGG | + | chr1_1:65583514-65583533 | None:intergenic | 50.0% | |
| CTCGCTTTCCTCCTCTTTGA+TGG | + | chr1_1:65583638-65583657 | None:intergenic | 50.0% | |
| GGAAAGCGAGCCTAACACAA+CGG | - | chr1_1:65583648-65583667 | Msa0036790:intron | 50.0% | |
| TCAGACAACCCCTGCAAATC+CGG | - | chr1_1:65583705-65583724 | Msa0036790:intron | 50.0% | |
| AAGGTTCCACCGGATTTGCA+GGG | + | chr1_1:65583717-65583736 | None:intergenic | 50.0% | |
| ACTTCAGGAGAAGGTTCCAC+CGG | + | chr1_1:65583727-65583746 | None:intergenic | 50.0% | |
| TGGACAGCATCAGATGCTTC+TGG | + | chr1_1:65583862-65583881 | None:intergenic | 50.0% | |
| TGTCCAAGTATCCTCGAGAG+AGG | - | chr1_1:65583876-65583895 | Msa0036790:intron | 50.0% | |
| ! | GGCTTGGCTGGAGTTTCTTT+TGG | + | chr1_1:65584171-65584190 | None:intergenic | 50.0% |
| TGAATGCTTCTGAGCTGGCT+TGG | + | chr1_1:65584187-65584206 | None:intergenic | 50.0% | |
| !! | GAGGACAGGTTTTTGGAGGA+TGG | + | chr1_1:65584276-65584295 | None:intergenic | 50.0% |
| !! | CTCTGAGGACAGGTTTTTGG+AGG | + | chr1_1:65584280-65584299 | None:intergenic | 50.0% |
| !!! | TGGCTCTGAGGACAGGTTTT+TGG | + | chr1_1:65584283-65584302 | None:intergenic | 50.0% |
| AAACCTGTCCTCAGAGCCAA+AGG | - | chr1_1:65584284-65584303 | Msa0036790:intron | 50.0% | |
| AACCTGTCCTCAGAGCCAAA+GGG | - | chr1_1:65584285-65584304 | Msa0036790:intron | 50.0% | |
| AGAGCCAAAGGGGGACATTA+AGG | - | chr1_1:65584296-65584315 | Msa0036790:intron | 50.0% | |
| GACAAGCCGGACAATGCACA+AGG | - | chr1_1:65580994-65581013 | Msa0036790:CDS | 55.0% | |
| GCCTGACAATGCACAAGGTC+AGG | - | chr1_1:65581422-65581441 | Msa0036790:CDS | 55.0% | |
| GCCTGACCTTGTGCATTGTC+AGG | + | chr1_1:65581426-65581445 | None:intergenic | 55.0% | |
| ACTCCTTCGTCCACGACAGA+AGG | - | chr1_1:65581447-65581466 | Msa0036790:intron | 55.0% | |
| TCACCTTCTGTCGTGGACGA+AGG | + | chr1_1:65581453-65581472 | None:intergenic | 55.0% | |
| GTCCACGACAGAAGGTGATG+AGG | - | chr1_1:65581455-65581474 | Msa0036790:intron | 55.0% | |
| GGCTCAACTTCAGTTGCCAC+TGG | + | chr1_1:65582488-65582507 | None:intergenic | 55.0% | |
| GCTTCAACTTCAGCAGCCAC+AGG | + | chr1_1:65582578-65582597 | None:intergenic | 55.0% | |
| GCTTCAACTTCAGCAGCCAC+AGG | + | chr1_1:65582578-65582597 | None:intergenic | 55.0% | |
| GGCTCAACTACAGTTGCCAC+AGG | + | chr1_1:65582758-65582777 | None:intergenic | 55.0% | |
| GGCTCAACTTCAGTAGCCAC+AGG | + | chr1_1:65583028-65583047 | None:intergenic | 55.0% | |
| AGGTTCCACCGGATTTGCAG+GGG | + | chr1_1:65583716-65583735 | None:intergenic | 55.0% | |
| GAAGGTTCCACCGGATTTGC+AGG | + | chr1_1:65583718-65583737 | None:intergenic | 55.0% | |
| GGAGAACACTACCAGTGTCG+AGG | - | chr1_1:65583798-65583817 | Msa0036790:intron | 55.0% | |
| TCGCCTCTCTCGAGGATACT+TGG | + | chr1_1:65583882-65583901 | None:intergenic | 55.0% | |
| AGTATCCTCGAGAGAGGCGA+AGG | - | chr1_1:65583882-65583901 | Msa0036790:intron | 55.0% | |
| ACCTGTCCTCAGAGCCAAAG+GGG | - | chr1_1:65584286-65584305 | Msa0036790:intron | 55.0% | |
| !! | AATGTCCCCCTTTGGCTCTG+AGG | + | chr1_1:65584295-65584314 | None:intergenic | 55.0% |
| GTGAAGGCTGAGCTTGCAGC+AGG | - | chr1_1:65581051-65581070 | Msa0036790:CDS | 60.0% | |
| AAAGCCCGAGCTTGAGCCTC+TGG | - | chr1_1:65582001-65582020 | Msa0036790:CDS | 60.0% | |
| TGAGGCCAGAGGCTCAAGCT+CGG | + | chr1_1:65582009-65582028 | None:intergenic | 60.0% | |
| !! | TTCGGCTCTTCTGAGGCCAG+AGG | + | chr1_1:65582020-65582039 | None:intergenic | 60.0% |
| GACAACCCCTGCAAATCCGG+TGG | - | chr1_1:65583708-65583727 | Msa0036790:intron | 60.0% | |
| GTCAACCTTCGCCTCTCTCG+AGG | + | chr1_1:65583890-65583909 | None:intergenic | 60.0% | |
| AGCAGGGGAGACCGAGACAA+AGG | - | chr1_1:65583957-65583976 | Msa0036790:intron | 60.0% | |
| AGGGGAGACCGAGACAAAGG+TGG | - | chr1_1:65583960-65583979 | Msa0036790:intron | 60.0% | |
| !! | TGCTTCTGAGCTGGCTTGGC+TGG | + | chr1_1:65584183-65584202 | None:intergenic | 60.0% |
| CCTGTCCTCAGAGCCAAAGG+GGG | - | chr1_1:65584287-65584306 | Msa0036790:intron | 60.0% | |
| GAGGCCAGAGGCTCAAGCTC+GGG | + | chr1_1:65582008-65582027 | None:intergenic | 65.0% | |
| !! | CCCCCTTTGGCTCTGAGGAC+AGG | + | chr1_1:65584290-65584309 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65580182 | 65584326 | 65580182 | ID=Msa0036790;Name=Msa0036790 |
| chr1_1 | mRNA | 65580182 | 65584326 | 65580182 | ID=Msa0036790-mRNA-1;Parent=Msa0036790;Name=Msa0036790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|0|0|5|0|954 |
| chr1_1 | exon | 65584318 | 65584326 | 65584318 | ID=Msa0036790-mRNA-1:exon:21111;Parent=Msa0036790-mRNA-1 |
| chr1_1 | exon | 65583458 | 65583595 | 65583458 | ID=Msa0036790-mRNA-1:exon:21110;Parent=Msa0036790-mRNA-1 |
| chr1_1 | exon | 65583245 | 65583397 | 65583245 | ID=Msa0036790-mRNA-1:exon:21109;Parent=Msa0036790-mRNA-1 |
| chr1_1 | exon | 65581901 | 65583184 | 65581901 | ID=Msa0036790-mRNA-1:exon:21108;Parent=Msa0036790-mRNA-1 |
| chr1_1 | exon | 65580182 | 65581462 | 65580182 | ID=Msa0036790-mRNA-1:exon:21107;Parent=Msa0036790-mRNA-1 |
| chr1_1 | CDS | 65584318 | 65584326 | 65584318 | ID=Msa0036790-mRNA-1:cds;Parent=Msa0036790-mRNA-1 |
| chr1_1 | CDS | 65583458 | 65583595 | 65583458 | ID=Msa0036790-mRNA-1:cds;Parent=Msa0036790-mRNA-1 |
| chr1_1 | CDS | 65583245 | 65583397 | 65583245 | ID=Msa0036790-mRNA-1:cds;Parent=Msa0036790-mRNA-1 |
| chr1_1 | CDS | 65581901 | 65583184 | 65581901 | ID=Msa0036790-mRNA-1:cds;Parent=Msa0036790-mRNA-1 |
| chr1_1 | CDS | 65580182 | 65581462 | 65580182 | ID=Msa0036790-mRNA-1:cds;Parent=Msa0036790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
