Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198470 | XP_003597410.1 | 87.077 | 325 | 24 | 5 | 1 | 311 | 1 | 321 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198470 | Q2HS22 | 87.077 | 325 | 24 | 5 | 1 | 311 | 1 | 321 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036790 | Msa0198470 | 0.803796 | 2.938471e-49 | -8.615850e-47 |
| Msa0122930 | Msa0198470 | -0.801294 | 9.636023e-49 | -8.615850e-47 |
| Msa0167570 | Msa0198470 | -0.814885 | 1.226783e-51 | -8.615850e-47 |
| Msa0196580 | Msa0198470 | -0.807286 | 5.444514e-50 | -8.615850e-47 |
| Msa0198470 | Msa0238460 | -0.800571 | 1.353937e-48 | -8.615850e-47 |
| Msa0198470 | Msa0275980 | -0.804882 | 1.745143e-49 | -8.615850e-47 |
| Msa0198470 | Msa0302560 | 0.922947 | 5.058733e-89 | -8.615850e-47 |
| Msa0198470 | Msa0316080 | -0.811617 | 6.400506e-51 | -8.615850e-47 |
| Msa0198470 | Msa0339920 | 0.942352 | 8.365474e-102 | -8.615850e-47 |
| Msa0198470 | Msa0345050 | 0.825627 | 4.228050e-54 | -8.615850e-47 |
| Msa0198470 | Msa0355550 | 0.822077 | 2.872546e-53 | -8.615850e-47 |
| Msa0198470 | Msa0492330 | -0.805999 | 1.017870e-49 | -8.615850e-47 |
| Msa0198470 | Msa0784780 | -0.815969 | 7.038644e-52 | -8.615850e-47 |
| Msa0198470 | Msa0800490 | 0.800897 | 1.161528e-48 | -8.615850e-47 |
| Msa0198470 | Msa0838490 | 0.804379 | 2.222320e-49 | -8.615850e-47 |
| Msa0198470 | Msa0858250 | -0.820434 | 6.872186e-53 | -8.615850e-47 |
| Msa0198470 | Msa0882480 | -0.811838 | 5.731018e-51 | -8.615850e-47 |
| Msa0198470 | Msa1136760 | 0.817999 | 2.463543e-52 | -8.615850e-47 |
| Msa0198470 | Msa1137210 | 0.828164 | 1.046909e-54 | -8.615850e-47 |
| Msa0198470 | Msa1162870 | 0.813336 | 2.695583e-51 | -8.615850e-47 |
| Msa0198470 | Msa1203320 | -0.803687 | 3.094639e-49 | -8.615850e-47 |
| Msa0198470 | Msa1279060 | 0.807423 | 5.090713e-50 | -8.615850e-47 |
| Msa0198470 | Msa1389170 | 0.812386 | 4.351325e-51 | -8.615850e-47 |
| Msa0198470 | Msa1398140 | 0.804736 | 1.872103e-49 | -8.615850e-47 |
| Msa0198470 | Msa1455200 | 0.815995 | 6.946236e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198470 | MtrunA17_Chr2g0328681 | 87.077 | 325 | 24 | 5 | 1 | 311 | 1 | 321 | 0.0 | 548 |
| Msa0198470 | MtrunA17_Chr4g0032271 | 39.695 | 262 | 133 | 6 | 73 | 311 | 118 | 377 | 1.51e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198470 | AT5G59050.1 | 34.494 | 316 | 123 | 14 | 25 | 311 | 52 | 312 | 3.16e-22 | 95.1 |
| Msa0198470 | AT5G59050.4 | 37.755 | 196 | 76 | 10 | 145 | 311 | 13 | 191 | 1.12e-12 | 66.2 |
Find 97 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATAAACAATTAATTAAT+TGG | 0.177829 | 2_1:+17068365 | None:intergenic |
| TGAAAACAAATTGATAATTA+TGG | 0.180195 | 2_1:+17068392 | None:intergenic |
| ACCTACGCTAACGTGGTTAA+AGG | 0.245389 | 2_1:-17067846 | Msa0198470:CDS |
| TTAATTTCTTCATCTGTCTT+TGG | 0.270914 | 2_1:-17068545 | None:intergenic |
| AAATTAAAGCCATTGAATTA+AGG | 0.289984 | 2_1:-17067695 | Msa0198470:CDS |
| TTTACTTTATTTCATTAGTT+TGG | 0.293030 | 2_1:+17063773 | None:intergenic |
| CACACAATATGTATCAGTTT+AGG | 0.304247 | 2_1:+17068435 | None:intergenic |
| GCACAACTCTTGCTGGTATA+AGG | 0.306651 | 2_1:+17065653 | None:intergenic |
| TGAAATAAAGTAAACAAATA+AGG | 0.315189 | 2_1:-17063764 | Msa0198470:three_prime_UTR |
| TTGTCATCAGCCATGATAAA+AGG | 0.326991 | 2_1:+17068282 | None:intergenic |
| CTTAATCATCATTATAATAA+TGG | 0.331007 | 2_1:-17063837 | Msa0198470:three_prime_UTR |
| TGTGTGTTGCAAATCATTAT+TGG | 0.333716 | 2_1:-17068418 | Msa0198470:five_prime_UTR |
| AATGAATAAGAAACCATAAA+AGG | 0.347594 | 2_1:-17063739 | Msa0198470:three_prime_UTR |
| ACACAATATGTATCAGTTTA+GGG | 0.377142 | 2_1:+17068436 | None:intergenic |
| GAAAACAAATTGATAATTAT+GGG | 0.380218 | 2_1:+17068393 | None:intergenic |
| ACTAAAGTGGGATTTGGAAT+TGG | 0.381703 | 2_1:+17068472 | None:intergenic |
| GATTCTCTAATGCATATTCA+TGG | 0.382088 | 2_1:+17063693 | None:intergenic |
| CCTACGCTAACGTGGTTAAA+GGG | 0.390281 | 2_1:-17067845 | Msa0198470:CDS |
| TGATGAAAATCTATCAATAT+TGG | 0.390503 | 2_1:+17067740 | None:intergenic |
| AAAGCCTGCACAACTCTTGC+TGG | 0.391708 | 2_1:+17065646 | None:intergenic |
| GTATGTACTAAAGTGGGATT+TGG | 0.399301 | 2_1:+17068466 | None:intergenic |
| ACCTGTCCCACTTCTTGAAC+CGG | 0.402912 | 2_1:+17067521 | None:intergenic |
| CTCCGCCAGCTACACCTTGT+TGG | 0.404982 | 2_1:-17067878 | Msa0198470:CDS |
| GGAGGGACGCCAACAACTTT+GGG | 0.411943 | 2_1:+17065598 | None:intergenic |
| GAGGCAGAATCATATCATTC+TGG | 0.418235 | 2_1:+17063913 | None:intergenic |
| TATTCATGGATCTAATTTGT+TGG | 0.434148 | 2_1:+17063707 | None:intergenic |
| GTCTTCCAACAAGGTGTAGC+TGG | 0.435910 | 2_1:+17067873 | None:intergenic |
| TGGAGGGACGCCAACAACTT+TGG | 0.438518 | 2_1:+17065597 | None:intergenic |
| GCAACTACACTTTGACAAAA+CGG | 0.470788 | 2_1:-17065623 | Msa0198470:CDS |
| CTGTCTCAGAAGCAAGGTAA+TGG | 0.472108 | 2_1:-17067639 | Msa0198470:CDS |
| CCAGTTCGGAATTGTGACTC+TGG | 0.478083 | 2_1:+17068106 | None:intergenic |
| CGACTGGTCTGCAATGGAGC+AGG | 0.481936 | 2_1:+17067579 | None:intergenic |
| TAGTAGTGTATGTACTAAAG+TGG | 0.486738 | 2_1:+17068459 | None:intergenic |
| ATATGATTCTGCCTCAAGAA+TGG | 0.490516 | 2_1:-17063905 | Msa0198470:CDS |
| TGTACCCCTCTGTCACGACT+TGG | 0.490937 | 2_1:+17063553 | None:intergenic |
| ATGACCCTTCTGAGCTCCCT+TGG | 0.499706 | 2_1:+17067913 | None:intergenic |
| TATACCAGCAAGAGTTGTGC+AGG | 0.500359 | 2_1:-17065650 | Msa0198470:CDS |
| GTTCACCGGATTCAACTTTG+TGG | 0.501110 | 2_1:-17067953 | Msa0198470:CDS |
| GTGGGATTTAATTAGTTCAC+CGG | 0.508002 | 2_1:-17067967 | Msa0198470:CDS |
| CTGCATCATTCCTCCACGAC+TGG | 0.512348 | 2_1:+17067563 | None:intergenic |
| TGTAACCAAGGGAGCTCAGA+AGG | 0.515050 | 2_1:-17067918 | Msa0198470:CDS |
| GGATTCAACTTTGTGGTCAC+CGG | 0.519426 | 2_1:-17067946 | Msa0198470:CDS |
| CCAGAGTCACAATTCCGAAC+TGG | 0.519755 | 2_1:-17068106 | Msa0198470:intron |
| TCCGGTTCAAGAAGTGGGAC+AGG | 0.522917 | 2_1:-17067522 | Msa0198470:CDS |
| ATCACACAAAGCATTGATTG+AGG | 0.524445 | 2_1:-17067721 | Msa0198470:CDS |
| TGAAAATCTATCAATATTGG+AGG | 0.528441 | 2_1:+17067743 | None:intergenic |
| CCTCCACGACTGGTCTGCAA+TGG | 0.529837 | 2_1:+17067573 | None:intergenic |
| AAAACGGCTCCCAAAGTTGT+TGG | 0.534159 | 2_1:-17065607 | Msa0198470:CDS |
| GGTGGGTCCGGTTCAAGAAG+TGG | 0.535246 | 2_1:-17067528 | Msa0198470:CDS |
| GCTCCATTGCAGACCAGTCG+TGG | 0.540135 | 2_1:-17067576 | Msa0198470:CDS |
| GTGAAAACATACCTTCCCTA+TGG | 0.540528 | 2_1:+17063973 | None:intergenic |
| CCTCTGTCACGACTTGGGAC+AGG | 0.544309 | 2_1:+17063559 | None:intergenic |
| AGTAGTGTATGTACTAAAGT+GGG | 0.546197 | 2_1:+17068460 | None:intergenic |
| CACCATGGTTCCAACGGACG+AGG | 0.546751 | 2_1:-17068217 | Msa0198470:CDS |
| GGAAACATATGGTACCAGTT+CGG | 0.547360 | 2_1:+17068092 | None:intergenic |
| ATCCTCGTCCGTTGGAACCA+TGG | 0.552840 | 2_1:+17068215 | None:intergenic |
| GGTGACCACAAAGTTGAATC+CGG | 0.559573 | 2_1:+17067948 | None:intergenic |
| CTCCCTTGGTTACAACTCAC+CGG | 0.562393 | 2_1:+17067927 | None:intergenic |
| CAGTTCGGAATTGTGACTCT+GGG | 0.562437 | 2_1:+17068107 | None:intergenic |
| CAGTCGTGGAGGAATGATGC+AGG | 0.565231 | 2_1:-17067562 | Msa0198470:CDS |
| GCGACTTCTAAACAGAATCA+TGG | 0.566085 | 2_1:-17067789 | Msa0198470:CDS |
| GAATGGTACCACGGAGTGGA+GGG | 0.567764 | 2_1:+17065581 | None:intergenic |
| CTTCAATATGTCCATTCTTG+AGG | 0.572811 | 2_1:+17063894 | None:intergenic |
| CTGTCCCAAGTCGTGACAGA+GGG | 0.576216 | 2_1:-17063558 | Msa0198470:three_prime_UTR |
| ATGGATCTAATTTGTTGGCG+TGG | 0.577599 | 2_1:+17063712 | None:intergenic |
| CAATCACACCATGGTTCCAA+CGG | 0.579340 | 2_1:-17068223 | Msa0198470:CDS |
| GTGATGAAATCCTCGTCCGT+TGG | 0.582382 | 2_1:+17068207 | None:intergenic |
| GTACCCCTCTGTCACGACTT+GGG | 0.583453 | 2_1:+17063554 | None:intergenic |
| CTCAAGCTAAATCATTACAA+AGG | 0.588044 | 2_1:+17063437 | None:intergenic |
| TCTCAGAAGCAAGGTAATGG+AGG | 0.589606 | 2_1:-17067636 | Msa0198470:CDS |
| CTACGCTAACGTGGTTAAAG+GGG | 0.595945 | 2_1:-17067844 | Msa0198470:CDS |
| GTGGGTCCGGTTCAAGAAGT+GGG | 0.596347 | 2_1:-17067527 | Msa0198470:CDS |
| AGAATGGTACCACGGAGTGG+AGG | 0.600926 | 2_1:+17065580 | None:intergenic |
| CCCTTTAACCACGTTAGCGT+AGG | 0.602141 | 2_1:+17067845 | None:intergenic |
| CTCAGAAGCAAGGTAATGGA+GGG | 0.607872 | 2_1:-17067635 | Msa0198470:CDS |
| AGACATTTGATGAGTTAACT+CGG | 0.619910 | 2_1:+17068185 | None:intergenic |
| TGATTCTGATGGAGCAACAA+CGG | 0.623497 | 2_1:+17067476 | None:intergenic |
| ATTATTACTGATGTCACATG+TGG | 0.623971 | 2_1:+17063860 | None:intergenic |
| GGCCTTGTTAGATGAGGACG+AGG | 0.624372 | 2_1:+17067600 | None:intergenic |
| CACCGGTGAGTTGTAACCAA+GGG | 0.632229 | 2_1:-17067929 | Msa0198470:CDS |
| GCAACAACGGTTCCAGCACG+AGG | 0.632333 | 2_1:+17067489 | None:intergenic |
| TTCGGAATTGTGACTCTGGG+AGG | 0.633765 | 2_1:+17068110 | None:intergenic |
| TTCCAACAAGGTGTAGCTGG+CGG | 0.645177 | 2_1:+17067876 | None:intergenic |
| GGAGCAGGCCTTGTTAGATG+AGG | 0.651849 | 2_1:+17067594 | None:intergenic |
| CATGCTCTGTCTCAGAAGCA+AGG | 0.652288 | 2_1:-17067645 | Msa0198470:CDS |
| GTCCTCGTCCTCATCTAACA+AGG | 0.653193 | 2_1:-17067602 | Msa0198470:CDS |
| TTAAGAATGGTACCACGGAG+TGG | 0.655116 | 2_1:+17065577 | None:intergenic |
| GTAACCAAGGGAGCTCAGAA+GGG | 0.662619 | 2_1:-17067917 | Msa0198470:CDS |
| CCTGTCCCAAGTCGTGACAG+AGG | 0.669199 | 2_1:-17063559 | Msa0198470:three_prime_UTR |
| CCATTGCAGACCAGTCGTGG+AGG | 0.675203 | 2_1:-17067573 | Msa0198470:CDS |
| TCTTGCTGGTATAAGGACAG+TGG | 0.678497 | 2_1:+17065660 | None:intergenic |
| GTTGGCGTCCCTCCACTCCG+TGG | 0.686225 | 2_1:-17065589 | Msa0198470:intron |
| TGCTAACTGAGAGAACATCA+TGG | 0.694654 | 2_1:+17068250 | None:intergenic |
| TAAGTAGTGACTTTAGAACA+AGG | 0.711133 | 2_1:-17063474 | Msa0198470:three_prime_UTR |
| TCACCGGTGAGTTGTAACCA+AGG | 0.715334 | 2_1:-17067930 | Msa0198470:CDS |
| TGTCCCAAGTCGTGACAGAG+GGG | 0.719210 | 2_1:-17063557 | Msa0198470:three_prime_UTR |
| TAGCAACAACAATCACACCA+TGG | 0.741419 | 2_1:-17068232 | Msa0198470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAATTTAAAT+CGG | + | chr2_1:17066646-17066665 | None:intergenic | 0.0% |
| !!! | TAATTTTAAAGATATTTACA+TGG | - | chr2_1:17064662-17064681 | Msa0198470:intron | 10.0% |
| !!! | CAATTTTAATAGATTTAAAA+TGG | - | chr2_1:17064889-17064908 | Msa0198470:intron | 10.0% |
| !!! | ATATTTGATGTTTTTAAAAT+TGG | + | chr2_1:17065430-17065449 | None:intergenic | 10.0% |
| !! | TAACAATAATAAATTAAGAA+TGG | + | chr2_1:17066351-17066370 | None:intergenic | 10.0% |
| !!! | ATTTTATATGCATATAAAAT+GGG | + | chr2_1:17066750-17066769 | None:intergenic | 10.0% |
| !!! | AATTTTATATGCATATAAAA+TGG | + | chr2_1:17066751-17066770 | None:intergenic | 10.0% |
| !! | ATATGCATATAAAATTTATT+TGG | - | chr2_1:17066755-17066774 | Msa0198470:intron | 10.0% |
| !! | TATGCATATAAAATTTATTT+GGG | - | chr2_1:17066756-17066775 | Msa0198470:intron | 10.0% |
| !!! | CTTTCTTTTTAAAATTATTT+GGG | - | chr2_1:17066846-17066865 | Msa0198470:intron | 10.0% |
| !!! | GAAAACAAATTGATAATTAT+GGG | + | chr2_1:17063522-17063541 | None:intergenic | 15.0% |
| !!! | TGAAAACAAATTGATAATTA+TGG | + | chr2_1:17063523-17063542 | None:intergenic | 15.0% |
| !!! | TTTAATAAAAGTACCTATTA+AGG | - | chr2_1:17065016-17065035 | Msa0198470:intron | 15.0% |
| !! | GTTTAATATGTAAAAATAGT+GGG | + | chr2_1:17065103-17065122 | None:intergenic | 15.0% |
| !! | TGTTTAATATGTAAAAATAG+TGG | + | chr2_1:17065104-17065123 | None:intergenic | 15.0% |
| !!! | TTTTATTACTTTTTTAAACG+TGG | - | chr2_1:17065257-17065276 | Msa0198470:intron | 15.0% |
| !!! | TTTATTACTTTTTTAAACGT+GGG | - | chr2_1:17065258-17065277 | Msa0198470:intron | 15.0% |
| !!! | AGATAGGTTTTTTTTTTTTA+AGG | + | chr2_1:17065885-17065904 | None:intergenic | 15.0% |
| !! | CAGTTAAGTATAATTAATTA+AGG | + | chr2_1:17066145-17066164 | None:intergenic | 15.0% |
| !! | GGTAAGATTATTTATTTATT+AGG | + | chr2_1:17066448-17066467 | None:intergenic | 15.0% |
| !!! | AACAATGTTAAATCTTTTTA+AGG | - | chr2_1:17066550-17066569 | Msa0198470:intron | 15.0% |
| !!! | CCAAATAATTTTAAAAAGAA+AGG | + | chr2_1:17066848-17066867 | None:intergenic | 15.0% |
| !!! | CCTTTCTTTTTAAAATTATT+TGG | - | chr2_1:17066845-17066864 | Msa0198470:intron | 15.0% |
| !!! | ACTTAAGAGTATTTTATTTT+TGG | + | chr2_1:17066907-17066926 | None:intergenic | 15.0% |
| !! | ATTTATAAACAATTTCTACA+TGG | - | chr2_1:17066997-17067016 | Msa0198470:intron | 15.0% |
| !! | AAATTAAACAAATGTAGAAA+GGG | + | chr2_1:17067444-17067463 | None:intergenic | 15.0% |
| !! | TAAATTAAACAAATGTAGAA+AGG | + | chr2_1:17067445-17067464 | None:intergenic | 15.0% |
| !!! | ATACTTTTCTTTAGAAAAAT+TGG | - | chr2_1:17067579-17067598 | Msa0198470:CDS | 15.0% |
| !!! | TTTTATATTATAGAACTAGT+TGG | + | chr2_1:17067815-17067834 | None:intergenic | 15.0% |
| !! | CTTAATCATCATTATAATAA+TGG | - | chr2_1:17068075-17068094 | Msa0198470:intron | 15.0% |
| !!! | TTTACTTTATTTCATTAGTT+TGG | + | chr2_1:17068142-17068161 | None:intergenic | 15.0% |
| !! | TGAAATAAAGTAAACAAATA+AGG | - | chr2_1:17068148-17068167 | Msa0198470:CDS | 15.0% |
| !! | CATATAAAAAAACAACTTAA+GGG | + | chr2_1:17068301-17068320 | None:intergenic | 15.0% |
| !! | TGATGAAAATCTATCAATAT+TGG | + | chr2_1:17064175-17064194 | None:intergenic | 20.0% |
| !! | AAATTAAAGCCATTGAATTA+AGG | - | chr2_1:17064217-17064236 | Msa0198470:intron | 20.0% |
| !!! | ATGTTTTTTCCTTAATTCAA+TGG | + | chr2_1:17064229-17064248 | None:intergenic | 20.0% |
| !!! | CATATTTAAGTACTTTTCAT+TGG | + | chr2_1:17065079-17065098 | None:intergenic | 20.0% |
| !!! | TATTACTCATTTTTACAAGT+GGG | - | chr2_1:17065137-17065156 | Msa0198470:intron | 20.0% |
| !! | GTAATAAAATATGTACTACT+TGG | + | chr2_1:17065205-17065224 | None:intergenic | 20.0% |
| !!! | TTTGATGTTTTTAAAATTGG+AGG | + | chr2_1:17065427-17065446 | None:intergenic | 20.0% |
| !!! | AAATGAAAGCTTTTTTTTTG+TGG | - | chr2_1:17065622-17065641 | Msa0198470:CDS | 20.0% |
| !!! | AAACGAATTTGATATTGTTT+TGG | + | chr2_1:17066168-17066187 | None:intergenic | 20.0% |
| !! | AAACTTAGAGTATAAAACTT+AGG | + | chr2_1:17066877-17066896 | None:intergenic | 20.0% |
| !! | GATTGATAAGAAAATGAAAT+AGG | + | chr2_1:17066971-17066990 | None:intergenic | 20.0% |
| !!! | TACAAGTACTATTTTATTGT+CGG | + | chr2_1:17067281-17067300 | None:intergenic | 20.0% |
| !!! | TGATTTGCAATTCTTAATAA+TGG | - | chr2_1:17067701-17067720 | Msa0198470:CDS | 20.0% |
| !!! | TGATGATGATAATTTTGTTT+TGG | - | chr2_1:17068104-17068123 | Msa0198470:intron | 20.0% |
| !! | AATGAATAAGAAACCATAAA+AGG | - | chr2_1:17068173-17068192 | Msa0198470:CDS | 20.0% |
| !! | CCATATAAAAAAACAACTTA+AGG | + | chr2_1:17068302-17068321 | None:intergenic | 20.0% |
| !!! | CCTTAAGTTGTTTTTTTATA+TGG | - | chr2_1:17068299-17068318 | Msa0198470:five_prime_UTR | 20.0% |
| ! | ACACAATATGTATCAGTTTA+GGG | + | chr2_1:17063479-17063498 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTCCTTTTATCA+TGG | - | chr2_1:17063620-17063639 | Msa0198470:three_prime_UTR | 25.0% |
| ! | CACACAAGAGTTAATAATAT+AGG | + | chr2_1:17063899-17063918 | None:intergenic | 25.0% |
| ! | TGAAAATCTATCAATATTGG+AGG | + | chr2_1:17064172-17064191 | None:intergenic | 25.0% |
| ! | CAGATTCGAATATTAAAAGT+GGG | + | chr2_1:17064563-17064582 | None:intergenic | 25.0% |
| ! | ACAGATTCGAATATTAAAAG+TGG | + | chr2_1:17064564-17064583 | None:intergenic | 25.0% |
| !!! | CTATTACTCATTTTTACAAG+TGG | - | chr2_1:17065136-17065155 | Msa0198470:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr2_1:17065164-17065183 | None:intergenic | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr2_1:17065177-17065196 | Msa0198470:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr2_1:17065178-17065197 | Msa0198470:intron | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr2_1:17065177-17065196 | Msa0198470:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr2_1:17065178-17065197 | Msa0198470:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr2_1:17065164-17065183 | None:intergenic | 25.0% |
| ! | TAACTAGATTGATGCTATTA+AGG | - | chr2_1:17065547-17065566 | Msa0198470:intron | 25.0% |
| ! | AACTAGATTGATGCTATTAA+GGG | - | chr2_1:17065548-17065567 | Msa0198470:intron | 25.0% |
| ! | GTGACCAAAAATATTCTTTA+TGG | - | chr2_1:17065948-17065967 | Msa0198470:intron | 25.0% |
| ! | ACCAAAAATATTCTTTATGG+TGG | - | chr2_1:17065951-17065970 | Msa0198470:intron | 25.0% |
| !! | ACCACCATAAAGAATATTTT+TGG | + | chr2_1:17065955-17065974 | None:intergenic | 25.0% |
| ! | AAAAATAAAACTGAACCGAA+AGG | + | chr2_1:17066040-17066059 | None:intergenic | 25.0% |
| ! | AATTAAGCAGTTAGAAAGTT+TGG | - | chr2_1:17066082-17066101 | Msa0198470:intron | 25.0% |
| ! | TTGTATATATTGTTAGGGAA+AGG | - | chr2_1:17066224-17066243 | Msa0198470:intron | 25.0% |
| ! | ATAAATTAAGAATGGTACCA+CGG | + | chr2_1:17066343-17066362 | None:intergenic | 25.0% |
| !! | AAACTTAGAGCATTAAACTT+AGG | + | chr2_1:17066787-17066806 | None:intergenic | 25.0% |
| !! | TAAGTTTAATGCTCTAAGTT+TGG | - | chr2_1:17066786-17066805 | Msa0198470:intron | 25.0% |
| ! | TTTCTACATGGAAAATTCTA+CGG | - | chr2_1:17067009-17067028 | Msa0198470:intron | 25.0% |
| !! | TATTCATGGATCTAATTTGT+TGG | + | chr2_1:17068208-17068227 | None:intergenic | 25.0% |
| ! | GGGGTACATATTAAAAAATA+AGG | - | chr2_1:17068374-17068393 | Msa0198470:five_prime_UTR | 25.0% |
| AGTAGTGTATGTACTAAAGT+GGG | + | chr2_1:17063455-17063474 | None:intergenic | 30.0% | |
| TAGTAGTGTATGTACTAAAG+TGG | + | chr2_1:17063456-17063475 | None:intergenic | 30.0% | |
| CACACAATATGTATCAGTTT+AGG | + | chr2_1:17063480-17063499 | None:intergenic | 30.0% | |
| TGTGTGTTGCAAATCATTAT+TGG | - | chr2_1:17063494-17063513 | Msa0198470:three_prime_UTR | 30.0% | |
| AGACATTTGATGAGTTAACT+CGG | + | chr2_1:17063730-17063749 | None:intergenic | 30.0% | |
| GTTATTCAATAGACCTGAAA+AGG | + | chr2_1:17063864-17063883 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTGGTTGATTCTGA+TGG | + | chr2_1:17064450-17064469 | None:intergenic | 30.0% |
| TCAGAATCAACCAAAAAGAA+AGG | - | chr2_1:17064450-17064469 | Msa0198470:intron | 30.0% | |
| ! | TGTTCATGTTTTTCACTAGT+CGG | - | chr2_1:17064499-17064518 | Msa0198470:intron | 30.0% |
| ACTAATAAAGAAGACACTTG+AGG | + | chr2_1:17064757-17064776 | None:intergenic | 30.0% | |
| AAGCTTGTAGAGTTACAAAT+GGG | + | chr2_1:17064919-17064938 | None:intergenic | 30.0% | |
| TAAGCTTGTAGAGTTACAAA+TGG | + | chr2_1:17064920-17064939 | None:intergenic | 30.0% | |
| !!! | TGAAAGCTTTTTTTTTGTGG+TGG | - | chr2_1:17065625-17065644 | Msa0198470:CDS | 30.0% |
| GATGACATGACATATTTAGA+TGG | + | chr2_1:17065748-17065767 | None:intergenic | 30.0% | |
| ATGTTTATGTGACAACTTAG+TGG | + | chr2_1:17065770-17065789 | None:intergenic | 30.0% | |
| AGTACAAAGACAAGATAGAT+AGG | + | chr2_1:17065901-17065920 | None:intergenic | 30.0% | |
| CAGCATGTTACTATAGATTA+GGG | + | chr2_1:17065992-17066011 | None:intergenic | 30.0% | |
| TGCACGTTGTATATATTGTT+AGG | - | chr2_1:17066218-17066237 | Msa0198470:intron | 30.0% | |
| GCACGTTGTATATATTGTTA+GGG | - | chr2_1:17066219-17066238 | Msa0198470:intron | 30.0% | |
| ! | AAATCAAAGTTGTTGCTTGA+TGG | + | chr2_1:17066380-17066399 | None:intergenic | 30.0% |
| TTAGGAGAGTAGTAACTAAA+CGG | + | chr2_1:17066430-17066449 | None:intergenic | 30.0% | |
| ATCTTACCCAACAAAATATG+TGG | - | chr2_1:17066460-17066479 | Msa0198470:intron | 30.0% | |
| ! | TCTCATCCACATATTTTGTT+GGG | + | chr2_1:17066469-17066488 | None:intergenic | 30.0% |
| ! | ATCTCATCCACATATTTTGT+TGG | + | chr2_1:17066470-17066489 | None:intergenic | 30.0% |
| !! | CCTAAGACTTTTAGTTAACT+TGG | + | chr2_1:17066507-17066526 | None:intergenic | 30.0% |
| CCAAGTTAACTAAAAGTCTT+AGG | - | chr2_1:17066504-17066523 | Msa0198470:intron | 30.0% | |
| CGAATAGATTAGGATTACAA+TGG | + | chr2_1:17066588-17066607 | None:intergenic | 30.0% | |
| ACTAACATCTCGAATAGATT+AGG | + | chr2_1:17066598-17066617 | None:intergenic | 30.0% | |
| GTTTGTGCAATTATTCGTAT+AGG | - | chr2_1:17066616-17066635 | Msa0198470:intron | 30.0% | |
| TATTGAATGTCATGTTGCTA+AGG | + | chr2_1:17066704-17066723 | None:intergenic | 30.0% | |
| ! | AGTCATGAGAATGACTATTT+TGG | - | chr2_1:17067035-17067054 | Msa0198470:intron | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | + | chr2_1:17067136-17067155 | None:intergenic | 30.0% |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr2_1:17067216-17067235 | None:intergenic | 30.0% | |
| TAGTAATGCTTGCAATATCT+TGG | + | chr2_1:17067307-17067326 | None:intergenic | 30.0% | |
| CAAACAGATGAGAAATTGAT+AGG | + | chr2_1:17067483-17067502 | None:intergenic | 30.0% | |
| GCAGTCTCGAAAAATAAAAT+TGG | + | chr2_1:17067741-17067760 | None:intergenic | 30.0% | |
| !!! | AGATCTTGTTTTGAACCATA+GGG | - | chr2_1:17067924-17067943 | Msa0198470:CDS | 30.0% |
| ATTATTACTGATGTCACATG+TGG | + | chr2_1:17068055-17068074 | None:intergenic | 30.0% | |
| GATTCTCTAATGCATATTCA+TGG | + | chr2_1:17068222-17068241 | None:intergenic | 30.0% | |
| !! | TAAGTAGTGACTTTAGAACA+AGG | - | chr2_1:17068438-17068457 | Msa0198470:five_prime_UTR | 30.0% |
| CTCAAGCTAAATCATTACAA+AGG | + | chr2_1:17068478-17068497 | None:intergenic | 30.0% | |
| ! | ACTAAAGTGGGATTTGGAAT+TGG | + | chr2_1:17063443-17063462 | None:intergenic | 35.0% |
| GTATGTACTAAAGTGGGATT+TGG | + | chr2_1:17063449-17063468 | None:intergenic | 35.0% | |
| TTGTCATCAGCCATGATAAA+AGG | + | chr2_1:17063633-17063652 | None:intergenic | 35.0% | |
| TGGATAGTAAGGGAAACATA+TGG | + | chr2_1:17063834-17063853 | None:intergenic | 35.0% | |
| GTGGGATTTAATTAGTTCAC+CGG | - | chr2_1:17063945-17063964 | Msa0198470:CDS | 35.0% | |
| ! | TAGGTTTTTGTCTTCCAACA+AGG | + | chr2_1:17064051-17064070 | None:intergenic | 35.0% |
| !! | ATCACACAAAGCATTGATTG+AGG | - | chr2_1:17064191-17064210 | Msa0198470:intron | 35.0% |
| AACCAAAAAGAAAGGTAACG+TGG | - | chr2_1:17064458-17064477 | Msa0198470:intron | 35.0% | |
| ! | ATCCACGTTACCTTTCTTTT+TGG | + | chr2_1:17064463-17064482 | None:intergenic | 35.0% |
| ! | TGTTTTTCACTAGTCGGTAA+TGG | - | chr2_1:17064505-17064524 | Msa0198470:intron | 35.0% |
| CTTAGAAAGTAGAAACAGAG+TGG | + | chr2_1:17064611-17064630 | None:intergenic | 35.0% | |
| CATTTAAGGAGTCCTTGTTA+GGG | + | chr2_1:17064963-17064982 | None:intergenic | 35.0% | |
| CCTTATTAGTGTATTGCCAT+TGG | + | chr2_1:17065053-17065072 | None:intergenic | 35.0% | |
| CCAATGGCAATACACTAATA+AGG | - | chr2_1:17065050-17065069 | Msa0198470:intron | 35.0% | |
| AAGGAACGGACAACTATATA+AGG | + | chr2_1:17065311-17065330 | None:intergenic | 35.0% | |
| TATAGTTGTCCGTTCCTTAA+CGG | - | chr2_1:17065313-17065332 | Msa0198470:intron | 35.0% | |
| ! | CTCAATTTTTCTTCCTCCAA+TGG | - | chr2_1:17065339-17065358 | Msa0198470:intron | 35.0% |
| ! | ATTTTTCTTCCTCCAATGGA+AGG | - | chr2_1:17065343-17065362 | Msa0198470:intron | 35.0% |
| TATCCACCTATATGCTATTG+AGG | - | chr2_1:17065452-17065471 | Msa0198470:intron | 35.0% | |
| ATCCACCTATATGCTATTGA+GGG | - | chr2_1:17065453-17065472 | Msa0198470:intron | 35.0% | |
| !!! | TGCTTTTTCTACCATGTGAT+AGG | - | chr2_1:17065476-17065495 | Msa0198470:intron | 35.0% |
| TTAGGATTTCACCTATCACA+TGG | + | chr2_1:17065490-17065509 | None:intergenic | 35.0% | |
| TGATAGGTGAAATCCTAAAG+TGG | - | chr2_1:17065492-17065511 | Msa0198470:intron | 35.0% | |
| !! | ATCAATCTAGTTGCCACTTT+AGG | + | chr2_1:17065508-17065527 | None:intergenic | 35.0% |
| !!! | AGCTTTTTTTTTGTGGTGGT+CGG | - | chr2_1:17065629-17065648 | Msa0198470:CDS | 35.0% |
| TGCATAAGATATGCAAGATC+GGG | + | chr2_1:17065664-17065683 | None:intergenic | 35.0% | |
| GTGCATAAGATATGCAAGAT+CGG | + | chr2_1:17065665-17065684 | None:intergenic | 35.0% | |
| ! | TGTACTAGTTTGCATGTGAT+CGG | - | chr2_1:17065915-17065934 | Msa0198470:intron | 35.0% |
| GCAGCATGTTACTATAGATT+AGG | + | chr2_1:17065993-17066012 | None:intergenic | 35.0% | |
| !! | AGTTGATGAGTTGTTCCTTT+CGG | - | chr2_1:17066022-17066041 | Msa0198470:intron | 35.0% |
| GCAACTACACTTTGACAAAA+CGG | - | chr2_1:17066289-17066308 | Msa0198470:intron | 35.0% | |
| AGGATGAAGCAACAAATTCA+TGG | + | chr2_1:17066684-17066703 | None:intergenic | 35.0% | |
| ATGTCATTGTACAAACAGTG+AGG | + | chr2_1:17067101-17067120 | None:intergenic | 35.0% | |
| TGTTACGCTTATAACAAGGT+AGG | + | chr2_1:17067192-17067211 | None:intergenic | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr2_1:17067217-17067236 | None:intergenic | 35.0% | |
| ATTCCAACAGTCCAAATACT+CGG | - | chr2_1:17067769-17067788 | Msa0198470:CDS | 35.0% | |
| !!! | CAGATCTTGTTTTGAACCAT+AGG | - | chr2_1:17067923-17067942 | Msa0198470:CDS | 35.0% |
| ATATGATTCTGCCTCAAGAA+TGG | - | chr2_1:17068007-17068026 | Msa0198470:intron | 35.0% | |
| CTTCAATATGTCCATTCTTG+AGG | + | chr2_1:17068021-17068040 | None:intergenic | 35.0% | |
| TGCTAACTGAGAGAACATCA+TGG | + | chr2_1:17063665-17063684 | None:intergenic | 40.0% | |
| TAGCAACAACAATCACACCA+TGG | - | chr2_1:17063680-17063699 | Msa0198470:three_prime_UTR | 40.0% | |
| GGAAACATATGGTACCAGTT+CGG | + | chr2_1:17063823-17063842 | None:intergenic | 40.0% | |
| ! | TCTTCCTTTTCATGTAGTCG+TGG | - | chr2_1:17063926-17063945 | Msa0198470:CDS | 40.0% |
| ! | CTTCCTTTTCATGTAGTCGT+GGG | - | chr2_1:17063927-17063946 | Msa0198470:CDS | 40.0% |
| AATCCCACGACTACATGAAA+AGG | + | chr2_1:17063933-17063952 | None:intergenic | 40.0% | |
| GCGACTTCTAAACAGAATCA+TGG | - | chr2_1:17064123-17064142 | Msa0198470:intron | 40.0% | |
| TGATTCTGATGGAGCAACAA+CGG | + | chr2_1:17064439-17064458 | None:intergenic | 40.0% | |
| ! | TTTCACTAGTCGGTAATGGT+TGG | - | chr2_1:17064509-17064528 | Msa0198470:intron | 40.0% |
| TTGTTAGGGAACTACCATTG+TGG | + | chr2_1:17064949-17064968 | None:intergenic | 40.0% | |
| ACAATGGTAGTTCCCTAACA+AGG | - | chr2_1:17064948-17064967 | Msa0198470:intron | 40.0% | |
| CCATTTAAGGAGTCCTTGTT+AGG | + | chr2_1:17064964-17064983 | None:intergenic | 40.0% | |
| CCTAACAAGGACTCCTTAAA+TGG | - | chr2_1:17064961-17064980 | Msa0198470:intron | 40.0% | |
| AAACAAGTGATGTGTCACGT+GGG | + | chr2_1:17064989-17065008 | None:intergenic | 40.0% | |
| TAAACAAGTGATGTGTCACG+TGG | + | chr2_1:17064990-17065009 | None:intergenic | 40.0% | |
| GGAGTCATTGAGTCCTTAAT+AGG | + | chr2_1:17065032-17065051 | None:intergenic | 40.0% | |
| TAAGGACTCAATGACTCCAA+TGG | - | chr2_1:17065034-17065053 | Msa0198470:intron | 40.0% | |
| ATATAAGGACTCTCTCTCCT+GGG | + | chr2_1:17065296-17065315 | None:intergenic | 40.0% | |
| TATATAAGGACTCTCTCTCC+TGG | + | chr2_1:17065297-17065316 | None:intergenic | 40.0% | |
| ATAGTTGTCCGTTCCTTAAC+GGG | - | chr2_1:17065314-17065333 | Msa0198470:intron | 40.0% | |
| GAAAAATTGAGTCCCCGTTA+AGG | + | chr2_1:17065330-17065349 | None:intergenic | 40.0% | |
| AAGCACCCTCAATAGCATAT+AGG | + | chr2_1:17065461-17065480 | None:intergenic | 40.0% | |
| !!! | GCTTTTTTTTTGTGGTGGTC+GGG | - | chr2_1:17065630-17065649 | Msa0198470:CDS | 40.0% |
| !!! | CTTTTTTTTTGTGGTGGTCG+GGG | - | chr2_1:17065631-17065650 | Msa0198470:CDS | 40.0% |
| GCATAAGATATGCAAGATCG+GGG | + | chr2_1:17065663-17065682 | None:intergenic | 40.0% | |
| GGCTAAATGTGGATGATTAG+TGG | + | chr2_1:17065845-17065864 | None:intergenic | 40.0% | |
| CTAGCTAGATAGGCTAAATG+TGG | + | chr2_1:17065856-17065875 | None:intergenic | 40.0% | |
| GGGATGTTACGCTTATAACA+AGG | + | chr2_1:17067196-17067215 | None:intergenic | 40.0% | |
| ATACCGAGTATTTGGACTGT+TGG | + | chr2_1:17067775-17067794 | None:intergenic | 40.0% | |
| ! | GCTAGTTGATACCGAGTATT+TGG | + | chr2_1:17067783-17067802 | None:intergenic | 40.0% |
| !!! | CTTGTTTTGAACCATAGGGA+AGG | - | chr2_1:17067928-17067947 | Msa0198470:CDS | 40.0% |
| GTGAAAACATACCTTCCCTA+TGG | + | chr2_1:17067942-17067961 | None:intergenic | 40.0% | |
| GAGGCAGAATCATATCATTC+TGG | + | chr2_1:17068002-17068021 | None:intergenic | 40.0% | |
| !! | ATGGATCTAATTTGTTGGCG+TGG | + | chr2_1:17068203-17068222 | None:intergenic | 40.0% |
| CAATCACACCATGGTTCCAA+CGG | - | chr2_1:17063689-17063708 | Msa0198470:three_prime_UTR | 45.0% | |
| CAGTTCGGAATTGTGACTCT+GGG | + | chr2_1:17063808-17063827 | None:intergenic | 45.0% | |
| GTTCACCGGATTCAACTTTG+TGG | - | chr2_1:17063959-17063978 | Msa0198470:CDS | 45.0% | |
| GGTGACCACAAAGTTGAATC+CGG | + | chr2_1:17063967-17063986 | None:intergenic | 45.0% | |
| GGATTCAACTTTGTGGTCAC+CGG | - | chr2_1:17063966-17063985 | Msa0198470:CDS | 45.0% | |
| GACAAAAACCTACGCTAACG+TGG | - | chr2_1:17064059-17064078 | Msa0198470:intron | 45.0% | |
| ACCTACGCTAACGTGGTTAA+AGG | - | chr2_1:17064066-17064085 | Msa0198470:intron | 45.0% | |
| CCTACGCTAACGTGGTTAAA+GGG | - | chr2_1:17064067-17064086 | Msa0198470:intron | 45.0% | |
| CTACGCTAACGTGGTTAAAG+GGG | - | chr2_1:17064068-17064087 | Msa0198470:intron | 45.0% | |
| CTGTCTCAGAAGCAAGGTAA+TGG | - | chr2_1:17064273-17064292 | Msa0198470:intron | 45.0% | |
| ! | TCTCAGAAGCAAGGTAATGG+AGG | - | chr2_1:17064276-17064295 | Msa0198470:intron | 45.0% |
| !! | CTCAGAAGCAAGGTAATGGA+GGG | - | chr2_1:17064277-17064296 | Msa0198470:intron | 45.0% |
| !!! | ATGATGCAGGCCGTTTTTCT+TGG | - | chr2_1:17064363-17064382 | Msa0198470:intron | 45.0% |
| ! | TAGTCGGTAATGGTTGGTTG+CGG | - | chr2_1:17064515-17064534 | Msa0198470:intron | 45.0% |
| ! | TGGTTGGTTGCGGAATCAAA+TGG | - | chr2_1:17064525-17064544 | Msa0198470:intron | 45.0% |
| ! | CAAGCTTAGAGCATCCACAA+TGG | - | chr2_1:17064932-17064951 | Msa0198470:intron | 45.0% |
| AACAAGTGATGTGTCACGTG+GGG | + | chr2_1:17064988-17065007 | None:intergenic | 45.0% | |
| TCTCTCTCCTGGGTAACTAA+CGG | + | chr2_1:17065286-17065305 | None:intergenic | 45.0% | |
| TAGTTGTCCGTTCCTTAACG+GGG | - | chr2_1:17065315-17065334 | Msa0198470:intron | 45.0% | |
| ATTGAGTCCCCGTTAAGGAA+CGG | + | chr2_1:17065325-17065344 | None:intergenic | 45.0% | |
| CTCCAATGGAAGGTCCTTAA+CGG | - | chr2_1:17065353-17065372 | Msa0198470:intron | 45.0% | |
| TCCAATGGAAGGTCCTTAAC+GGG | - | chr2_1:17065354-17065373 | Msa0198470:intron | 45.0% | |
| GGAGTGGTCCTTGTTAAGTA+AGG | - | chr2_1:17065376-17065395 | Msa0198470:intron | 45.0% | |
| !! | ACTAAGAGCATCTCCAATGG+GGG | + | chr2_1:17065404-17065423 | None:intergenic | 45.0% |
| !! | GACTAAGAGCATCTCCAATG+GGG | + | chr2_1:17065405-17065424 | None:intergenic | 45.0% |
| !! | GGACTAAGAGCATCTCCAAT+GGG | + | chr2_1:17065406-17065425 | None:intergenic | 45.0% |
| !! | AGGACTAAGAGCATCTCCAA+TGG | + | chr2_1:17065407-17065426 | None:intergenic | 45.0% |
| CACCCTCAATAGCATATAGG+TGG | + | chr2_1:17065458-17065477 | None:intergenic | 45.0% | |
| AAGGAACGAGCTAGCTAGAT+AGG | + | chr2_1:17065866-17065885 | None:intergenic | 45.0% | |
| ! | CTAGTTTGCATGTGATCGGA+TGG | - | chr2_1:17065919-17065938 | Msa0198470:intron | 45.0% |
| TCTTGCTGGTATAAGGACAG+TGG | + | chr2_1:17066255-17066274 | None:intergenic | 45.0% | |
| GCACAACTCTTGCTGGTATA+AGG | + | chr2_1:17066262-17066281 | None:intergenic | 45.0% | |
| TATACCAGCAAGAGTTGTGC+AGG | - | chr2_1:17066262-17066281 | Msa0198470:intron | 45.0% | |
| AAAACGGCTCCCAAAGTTGT+TGG | - | chr2_1:17066305-17066324 | Msa0198470:intron | 45.0% | |
| TTAAGAATGGTACCACGGAG+TGG | + | chr2_1:17066338-17066357 | None:intergenic | 45.0% | |
| !!! | CTGTTGCTGCTTTTGTTGAC+TGG | + | chr2_1:17067975-17067994 | None:intergenic | 45.0% |
| ! | TTGGCGTGGAGTTCCTTTTA+TGG | + | chr2_1:17068189-17068208 | None:intergenic | 45.0% |
| !! | ATAATAAACAATTAATTAAT+TGG | + | chr2_1:17063550-17063569 | None:intergenic | 5.0% |
| !!! | TATCTTTAAAATTATTTATT+GGG | + | chr2_1:17064656-17064675 | None:intergenic | 5.0% |
| !!! | ATATCTTTAAAATTATTTAT+TGG | + | chr2_1:17064657-17064676 | None:intergenic | 5.0% |
| !! | ATAAAAAAAAAATACATTTA+AGG | + | chr2_1:17064833-17064852 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTAATTTAAATC+GGG | + | chr2_1:17066645-17066664 | None:intergenic | 5.0% |
| GTGATGAAATCCTCGTCCGT+TGG | + | chr2_1:17063708-17063727 | None:intergenic | 50.0% | |
| TTCGGAATTGTGACTCTGGG+AGG | + | chr2_1:17063805-17063824 | None:intergenic | 50.0% | |
| CCAGTTCGGAATTGTGACTC+TGG | + | chr2_1:17063809-17063828 | None:intergenic | 50.0% | |
| CCAGAGTCACAATTCCGAAC+TGG | - | chr2_1:17063806-17063825 | Msa0198470:three_prime_UTR | 50.0% | |
| ! | AGGAAGCGCGTGGATAGTAA+GGG | + | chr2_1:17063844-17063863 | None:intergenic | 50.0% |
| ! | AAGGAAGCGCGTGGATAGTA+AGG | + | chr2_1:17063845-17063864 | None:intergenic | 50.0% |
| ! | TATCCACGCGCTTCCTTTTC+AGG | - | chr2_1:17063848-17063867 | Msa0198470:three_prime_UTR | 50.0% |
| TCACCGGTGAGTTGTAACCA+AGG | - | chr2_1:17063982-17064001 | Msa0198470:CDS | 50.0% | |
| CACCGGTGAGTTGTAACCAA+GGG | - | chr2_1:17063983-17064002 | Msa0198470:CDS | 50.0% | |
| CTCCCTTGGTTACAACTCAC+CGG | + | chr2_1:17063988-17064007 | None:intergenic | 50.0% | |
| TGTAACCAAGGGAGCTCAGA+AGG | - | chr2_1:17063994-17064013 | Msa0198470:intron | 50.0% | |
| GTAACCAAGGGAGCTCAGAA+GGG | - | chr2_1:17063995-17064014 | Msa0198470:intron | 50.0% | |
| TTCCAACAAGGTGTAGCTGG+CGG | + | chr2_1:17064039-17064058 | None:intergenic | 50.0% | |
| GTCTTCCAACAAGGTGTAGC+TGG | + | chr2_1:17064042-17064061 | None:intergenic | 50.0% | |
| CCCTTTAACCACGTTAGCGT+AGG | + | chr2_1:17064070-17064089 | None:intergenic | 50.0% | |
| CATGCTCTGTCTCAGAAGCA+AGG | - | chr2_1:17064267-17064286 | Msa0198470:intron | 50.0% | |
| GTCCTCGTCCTCATCTAACA+AGG | - | chr2_1:17064310-17064329 | Msa0198470:intron | 50.0% | |
| !!! | ATGCAGGCCGTTTTTCTTGG+TGG | - | chr2_1:17064366-17064385 | Msa0198470:intron | 50.0% |
| !!! | TGCAGGCCGTTTTTCTTGGT+GGG | - | chr2_1:17064367-17064386 | Msa0198470:intron | 50.0% |
| ACCGGACCCACCAAGAAAAA+CGG | + | chr2_1:17064376-17064395 | None:intergenic | 50.0% | |
| ACCTGTCCCACTTCTTGAAC+CGG | + | chr2_1:17064394-17064413 | None:intergenic | 50.0% | |
| TGTCACGTGGGGTCCATTTA+AGG | + | chr2_1:17064977-17064996 | None:intergenic | 50.0% | |
| CTCTCTCCTGGGTAACTAAC+GGG | + | chr2_1:17065285-17065304 | None:intergenic | 50.0% | |
| CGTTAAGGACCTTCCATTGG+AGG | + | chr2_1:17065355-17065374 | None:intergenic | 50.0% | |
| CCAATGGAAGGTCCTTAACG+GGG | - | chr2_1:17065355-17065374 | Msa0198470:intron | 50.0% | |
| TGGGGGGTCCTTACTTAACA+AGG | + | chr2_1:17065387-17065406 | None:intergenic | 50.0% | |
| GTTAAGTAAGGACCCCCCAT+TGG | - | chr2_1:17065388-17065407 | Msa0198470:intron | 50.0% | |
| !! | CTAAGAGCATCTCCAATGGG+GGG | + | chr2_1:17065403-17065422 | None:intergenic | 50.0% |
| TGAGCTTAGCTCAGCTGGTT+GGG | + | chr2_1:17065691-17065710 | None:intergenic | 50.0% | |
| AAAGCCTGCACAACTCTTGC+TGG | + | chr2_1:17066269-17066288 | None:intergenic | 50.0% | |
| ATCCTCGTCCGTTGGAACCA+TGG | + | chr2_1:17063700-17063719 | None:intergenic | 55.0% | |
| ! | AGACCTGAAAAGGAAGCGCG+TGG | + | chr2_1:17063854-17063873 | None:intergenic | 55.0% |
| ATGACCCTTCTGAGCTCCCT+TGG | + | chr2_1:17064002-17064021 | None:intergenic | 55.0% | |
| !! | GGCCTTGTTAGATGAGGACG+AGG | + | chr2_1:17064315-17064334 | None:intergenic | 55.0% |
| !! | GGAGCAGGCCTTGTTAGATG+AGG | + | chr2_1:17064321-17064340 | None:intergenic | 55.0% |
| CTGCATCATTCCTCCACGAC+TGG | + | chr2_1:17064352-17064371 | None:intergenic | 55.0% | |
| CAGTCGTGGAGGAATGATGC+AGG | - | chr2_1:17064350-17064369 | Msa0198470:intron | 55.0% | |
| !!! | GCCGTTTTTCTTGGTGGGTC+CGG | - | chr2_1:17064372-17064391 | Msa0198470:intron | 55.0% |
| GTGGGTCCGGTTCAAGAAGT+GGG | - | chr2_1:17064385-17064404 | Msa0198470:intron | 55.0% | |
| TCCGGTTCAAGAAGTGGGAC+AGG | - | chr2_1:17064390-17064409 | Msa0198470:intron | 55.0% | |
| ! | GGTGTTTTCTTGCCTCGTGC+TGG | - | chr2_1:17064411-17064430 | Msa0198470:intron | 55.0% |
| CCCCGTTAAGGACCTTCCAT+TGG | + | chr2_1:17065358-17065377 | None:intergenic | 55.0% | |
| ACAAGGACCACTCCCCGTTA+AGG | + | chr2_1:17065370-17065389 | None:intergenic | 55.0% | |
| GTGAGCTTAGCTCAGCTGGT+TGG | + | chr2_1:17065692-17065711 | None:intergenic | 55.0% | |
| GCATGTGATCGGATGGTGAG+TGG | - | chr2_1:17065926-17065945 | Msa0198470:intron | 55.0% | |
| GGAGGGACGCCAACAACTTT+GGG | + | chr2_1:17066317-17066336 | None:intergenic | 55.0% | |
| TGGAGGGACGCCAACAACTT+TGG | + | chr2_1:17066318-17066337 | None:intergenic | 55.0% | |
| GAATGGTACCACGGAGTGGA+GGG | + | chr2_1:17066334-17066353 | None:intergenic | 55.0% | |
| AGAATGGTACCACGGAGTGG+AGG | + | chr2_1:17066335-17066354 | None:intergenic | 55.0% | |
| CTGTCCCAAGTCGTGACAGA+GGG | - | chr2_1:17068354-17068373 | Msa0198470:five_prime_UTR | 55.0% | |
| TGTCCCAAGTCGTGACAGAG+GGG | - | chr2_1:17068355-17068374 | Msa0198470:five_prime_UTR | 55.0% | |
| GTACCCCTCTGTCACGACTT+GGG | + | chr2_1:17068361-17068380 | None:intergenic | 55.0% | |
| TGTACCCCTCTGTCACGACT+TGG | + | chr2_1:17068362-17068381 | None:intergenic | 55.0% | |
| CACCATGGTTCCAACGGACG+AGG | - | chr2_1:17063695-17063714 | Msa0198470:three_prime_UTR | 60.0% | |
| CTCCGCCAGCTACACCTTGT+TGG | - | chr2_1:17064034-17064053 | Msa0198470:intron | 60.0% | |
| !! | CGACTGGTCTGCAATGGAGC+AGG | + | chr2_1:17064336-17064355 | None:intergenic | 60.0% |
| GCTCCATTGCAGACCAGTCG+TGG | - | chr2_1:17064336-17064355 | Msa0198470:intron | 60.0% | |
| !! | CCTCCACGACTGGTCTGCAA+TGG | + | chr2_1:17064342-17064361 | None:intergenic | 60.0% |
| CCATTGCAGACCAGTCGTGG+AGG | - | chr2_1:17064339-17064358 | Msa0198470:intron | 60.0% | |
| GGTGGGTCCGGTTCAAGAAG+TGG | - | chr2_1:17064384-17064403 | Msa0198470:intron | 60.0% | |
| GCAACAACGGTTCCAGCACG+AGG | + | chr2_1:17064426-17064445 | None:intergenic | 60.0% | |
| GTGGGACCCGTTAGTTACCC+AGG | - | chr2_1:17065276-17065295 | Msa0198470:intron | 60.0% | |
| GGAAGGTCCTTAACGGGGAG+TGG | - | chr2_1:17065360-17065379 | Msa0198470:intron | 60.0% | |
| CCTCGTGAGCTTAGCTCAGC+TGG | + | chr2_1:17065696-17065715 | None:intergenic | 60.0% | |
| CCAGCTGAGCTAAGCTCACG+AGG | - | chr2_1:17065693-17065712 | Msa0198470:intron | 60.0% | |
| ! | CCTCTGTCACGACTTGGGAC+AGG | + | chr2_1:17068356-17068375 | None:intergenic | 60.0% |
| CCTGTCCCAAGTCGTGACAG+AGG | - | chr2_1:17068353-17068372 | Msa0198470:five_prime_UTR | 60.0% | |
| GTTGGCGTCCCTCCACTCCG+TGG | - | chr2_1:17066323-17066342 | Msa0198470:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 17063374 | 17068560 | 17063374 | ID=Msa0198470;Name=Msa0198470 |
| chr2_1 | mRNA | 17063374 | 17068560 | 17063374 | ID=Msa0198470-mRNA-1;Parent=Msa0198470;Name=Msa0198470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=265|1|1|1|0.66|0.75|4|522|311 |
| chr2_1 | exon | 17063374 | 17064008 | 17063374 | ID=Msa0198470-mRNA-1:exon:7177;Parent=Msa0198470-mRNA-1 |
| chr2_1 | exon | 17065590 | 17065694 | 17065590 | ID=Msa0198470-mRNA-1:exon:7176;Parent=Msa0198470-mRNA-1 |
| chr2_1 | exon | 17067463 | 17067991 | 17067463 | ID=Msa0198470-mRNA-1:exon:7175;Parent=Msa0198470-mRNA-1 |
| chr2_1 | exon | 17068107 | 17068560 | 17068107 | ID=Msa0198470-mRNA-1:exon:7174;Parent=Msa0198470-mRNA-1 |
| chr2_1 | five_prime_UTR | 17068296 | 17068560 | 17068296 | ID=Msa0198470-mRNA-1:five_prime_utr;Parent=Msa0198470-mRNA-1 |
| chr2_1 | CDS | 17068107 | 17068295 | 17068107 | ID=Msa0198470-mRNA-1:cds;Parent=Msa0198470-mRNA-1 |
| chr2_1 | CDS | 17067463 | 17067991 | 17067463 | ID=Msa0198470-mRNA-1:cds;Parent=Msa0198470-mRNA-1 |
| chr2_1 | CDS | 17065590 | 17065694 | 17065590 | ID=Msa0198470-mRNA-1:cds;Parent=Msa0198470-mRNA-1 |
| chr2_1 | CDS | 17063896 | 17064008 | 17063896 | ID=Msa0198470-mRNA-1:cds;Parent=Msa0198470-mRNA-1 |
| chr2_1 | three_prime_UTR | 17063374 | 17063895 | 17063374 | ID=Msa0198470-mRNA-1:three_prime_utr;Parent=Msa0198470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
