AlfalfaGEDB | Msa0081020

M. sativa cultivar zhongmu-4 / Msa0081020

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081020	RHN80910.1	70.250	400	81	5	26	405	27	408	5.09e-100	313

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081020	A0A396JRJ4	70.250	400	81	5	26	405	27	408	2.43e-100	313

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0081020	0.852106	5.737902e-61	-8.615850e-47
Msa0002580	Msa0081020	0.812272	4.607832e-51	-8.615850e-47
Msa0005380	Msa0081020	0.822354	2.477049e-53	-8.615850e-47
Msa0012200	Msa0081020	0.804207	2.412862e-49	-8.615850e-47
Msa0017930	Msa0081020	0.821457	3.996753e-53	-8.615850e-47
Msa0028620	Msa0081020	0.802749	4.840085e-49	-8.615850e-47
Msa0030700	Msa0081020	0.816472	5.434099e-52	-8.615850e-47
Msa0036790	Msa0081020	0.830656	2.597349e-55	-8.615850e-47
Msa0038290	Msa0081020	-0.801249	9.843711e-49	-8.615850e-47
Msa0053860	Msa0081020	0.806765	7.016690e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081020	MtrunA17_Chr1g0193341	70.250	400	81	5	26	405	27	408	4.68e-104	313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 171 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTGGATATTGAGA+CGG	0.635667	1_2:-59479498	None:intergenic
AAAAGTTGTTGTTGCTGCAG+AGG	0.578943	1_2:-59479105	None:intergenic
AAACCTGTCCTCAGAGCCAA+AGG	0.538748	1_2:-59478643	None:intergenic
AAAGACAACAGCAGCGATAT+CGG	0.428235	1_2:-59480785	None:intergenic
AAAGCAAAGAAGGCTATCAC+TGG	0.552054	1_2:-59478684	None:intergenic
AAAGCCCGAGCTTGAGCCTC+TGG	0.433641	1_2:-59480926	None:intergenic
AAAGCCTGTGGTTACTGAAG+TGG	0.595466	1_2:-59479636	None:intergenic
AACAACATTCAACGGAACAA+AGG	0.561333	1_2:-59479817	None:intergenic
AACACCAAGAGAAGAACATG+CGG	0.701473	1_2:-59480593	None:intergenic
AACAGAGAAAGTAAAGCCTG+TGG	0.684473	1_2:-59479648	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAATTAAAATTGCTTCCA+TGG	+	chr1_2:59478334-59478353	Msa0081020:five_prime_UTR	30.0%
GGGACATTAAGGTTAAATAA+TGG	-	chr1_2:59478623-59478642	None:intergenic	30.0%
ATCTAAATTCGAAAAAGACG+AGG	-	chr1_2:59478901-59478920	None:intergenic	30.0%
GAAAAAAGTGAAGGATCTAA+TGG	-	chr1_2:59479320-59479339	None:intergenic	30.0%
CTAAGTGAACAATTACAAGT+AGG	-	chr1_2:59479392-59479411	None:intergenic	30.0%
AAAAGACTTGGATATTGAGA+CGG	-	chr1_2:59479501-59479520	None:intergenic	30.0%
ACTGAAAATCAAGAACAAAC+AGG	-	chr1_2:59479548-59479567	None:intergenic	30.0%
TGTTTGAATGATTGAATTCC+TGG	+	chr1_2:59479596-59479615	Msa0081020:five_prime_UTR	30.0%
TCAACAATTGCAATTGCATT+TGG	+	chr1_2:59480832-59480851	Msa0081020:CDS	30.0%
ATCACAAGAAATTTCACAAG+AGG	-	chr1_2:59480866-59480885	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	59478312	59481008	59478312	ID=Msa0081020;Name=Msa0081020
chr1_2	mRNA	59478312	59481008	59478312	ID=Msa0081020-mRNA-1;Parent=Msa0081020;Name=Msa0081020-mRNA-1;_AED=0.15;_eAED=0.48;_QI=1443\|0\|0.5\|1\|0\|0\|2\|0\|405
chr1_2	exon	59478312	59479923	59478312	ID=Msa0081020-mRNA-1:exon:19243;Parent=Msa0081020-mRNA-1
chr1_2	exon	59479960	59481008	59479960	ID=Msa0081020-mRNA-1:exon:19244;Parent=Msa0081020-mRNA-1
chr1_2	five_prime_UTR	59478312	59479754	59478312	ID=Msa0081020-mRNA-1:five_prime_utr;Parent=Msa0081020-mRNA-1
chr1_2	CDS	59479755	59479923	59479755	ID=Msa0081020-mRNA-1:cds;Parent=Msa0081020-mRNA-1
chr1_2	CDS	59479960	59481008	59479960	ID=Msa0081020-mRNA-1:cds;Parent=Msa0081020-mRNA-1

Gene Sequence

>Msa0081020

ATGACATCATTGGTTTCTGTAGACTGTTCTGGAATTGAATATGTGTTTGGTTGCTCCTCTTCCCTTTGTTCCGTTGAATGTTGTTCTGGTTCTTTCCGGTTTTCCTCAACTTCAGTAACCACAGGTTCACCTTTTACTGTTTCTGTAGGCTCAACTTCAGTAGCCACAGTAGCCACGGCTTCTTCTTTTACCGTTTCTGTAGGATCAACTTCAGTAACCACAGGTTCGACTTTTACTGTTTCTGTTGGATCAACTTCAGTAACCACGTGTTCTTCTTTTACTGTTTCTGTAGCTTCAACTTCAGTAGCCACGGCTTCTTCTTTTACCGTTTCTGTAGGATCAACTTCAGTAACTACAGGTTCGTCTTTTACCGTTTCTGTAGGCTCAACTACAGTTGCCACAGGTTCTTCTTTTACCGTTTCTGTAGGATCAACTTCAGTAACCACAGGTTCGACTTTTACTGTTTCTGTAGCTTCAACTTCAGTAGCTACAGCTTCTTCTTTTACCGTTTCTGTAGCTTCAACTTCAGCAGCCAAAGGTTCTTCTTTTACCGTTTCTGTAGCTTCAACTTCAGCAGCCACAGGTTCGTCTTTTACAGTTTCTGTAGGCTCAACTACAGTAACTGCAGGTTCGTCTTTTACCTTTTCTGTAGGCTCAACTTCAGTTGCCACTGGTTCTTCTTTTACTGTTTCTGTAGGATCAACTTCAGTAACCACAGGTTCGTCTTTTACTGTTTCTGGAACCTCAACTTCAGTAGCTGCAGGTTCTTCTTTTACTGTTTCCGTAGCCTCAACTTCAGTAGCCGCATGTTCTTCTCTTGGTGTTTCTGTAGCCTCAATTTCAGTAACCACGGGTTCTTTGTTTACTATATCTGCAGTCTCAACTTCGGTAACCACGGGTTCTTCTTTTACTTTATCTGCAGTCTCAACTTCGGTAACCACGGGTTCTTCTTTCACTGTTTCGGTAGGCTCTACTTCGATGTTTTTGGTCTCTTCCGATATCGCTGCTGTTGTCTTTTCCTCATTGGCCTCGACTGAAGATTCAACAATTGCAATTGCATTTGGTTGCTCTGCCTCTTGTGAAATTTCTTGTGATTCTTTTTCCGGTTCTTTGGTTATTTTCGGCTCTGCTGAGGCCAGAGGCTCAAGCTCGGGCTTTTCTTCCTTTTCGGCACTTGTTTCTGAAATTTCAGCTTGTTTCACCTCCTCTTCAAATTGA

Protein sequence

>Msa0081020

MTSLVSVDCSGIEYVFGCSSSLCSVECCSGSFRFSSTSVTTGSPFTVSVGSTSVATVATASSFTVSVGSTSVTTGSTFTVSVGSTSVTTCSSFTVSVASTSVATASSFTVSVGSTSVTTGSSFTVSVGSTTVATGSSFTVSVGSTSVTTGSTFTVSVASTSVATASSFTVSVASTSAAKGSSFTVSVASTSAATGSSFTVSVGSTTVTAGSSFTFSVGSTSVATGSSFTVSVGSTSVTTGSSFTVSGTSTSVAAGSSFTVSVASTSVAACSSLGVSVASISVTTGSLFTISAVSTSVTTGSSFTLSAVSTSVTTGSSFTVSVGSTSMFLVSSDIAAVVFSSLASTEDSTIAIAFGCSASCEISCDSFSGSLVIFGSAEARGSSSGFSSFSALVSEISACFTSSSN*