Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132000 | KEH43136.1 | 77.868 | 619 | 67 | 6 | 376 | 954 | 545 | 1133 | 0.0 | 816 |
Msa0132000 | KEH43136.1 | 78.620 | 594 | 54 | 5 | 1 | 543 | 17 | 588 | 0.0 | 764 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132000 | A0A072VNB6 | 77.868 | 619 | 67 | 6 | 376 | 954 | 545 | 1133 | 0.0 | 816 |
Msa0132000 | A0A072VNB6 | 78.620 | 594 | 54 | 5 | 1 | 543 | 17 | 588 | 0.0 | 764 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036790 | Msa0132000 | 0.950424 | 1.695253e-108 | -8.615850e-47 |
Msa0055940 | Msa0132000 | 0.800236 | 1.584029e-48 | -8.615850e-47 |
Msa0081020 | Msa0132000 | 0.905876 | 2.700178e-80 | -8.615850e-47 |
Msa0132000 | Msa0191990 | 0.800659 | 1.298929e-48 | -8.615850e-47 |
Msa0132000 | Msa0192680 | 0.831234 | 1.873681e-55 | -8.615850e-47 |
Msa0132000 | Msa0206450 | 0.813469 | 2.519227e-51 | -8.615850e-47 |
Msa0132000 | Msa0269970 | 0.890821 | 6.961658e-74 | -8.615850e-47 |
Msa0132000 | Msa0269980 | 0.967980 | 4.969671e-128 | -8.615850e-47 |
Msa0132000 | Msa0272600 | 0.820588 | 6.336789e-53 | -8.615850e-47 |
Msa0132000 | Msa0302560 | 0.807000 | 6.258404e-50 | -8.615850e-47 |
Msa0132000 | Msa0312810 | 0.856368 | 3.373563e-62 | -8.615850e-47 |
Msa0132000 | Msa0339920 | 0.810300 | 1.234638e-50 | -8.615850e-47 |
Msa0132000 | Msa0544490 | 0.800217 | 1.598601e-48 | -8.615850e-47 |
Msa0132000 | Msa0559650 | -0.803546 | 3.310623e-49 | -8.615850e-47 |
Msa0132000 | Msa0567120 | 0.827268 | 1.717995e-54 | -8.615850e-47 |
Msa0132000 | Msa0658580 | 0.828397 | 9.195615e-55 | -8.615850e-47 |
Msa0132000 | Msa0703540 | 0.830716 | 2.510424e-55 | -8.615850e-47 |
Msa0132000 | Msa0770340 | 0.819170 | 1.336840e-52 | -8.615850e-47 |
Msa0132000 | Msa0842750 | 0.802807 | 4.708037e-49 | -8.615850e-47 |
Msa0132000 | Msa0881010 | 0.810551 | 1.089746e-50 | -8.615850e-47 |
Msa0132000 | Msa0881040 | 0.809173 | 2.156266e-50 | -8.615850e-47 |
Msa0132000 | Msa0931750 | 0.833793 | 4.347710e-56 | -8.615850e-47 |
Msa0132000 | Msa0935840 | -0.810622 | 1.051971e-50 | -8.615850e-47 |
Msa0132000 | Msa1106860 | 0.807410 | 5.123842e-50 | -8.615850e-47 |
Msa0132000 | Msa1132470 | 0.827701 | 1.352770e-54 | -8.615850e-47 |
Msa0132000 | Msa1137210 | 0.804327 | 2.278605e-49 | -8.615850e-47 |
Msa0132000 | Msa1150280 | 0.806309 | 8.755750e-50 | -8.615850e-47 |
Msa0132000 | Msa1255210 | 0.801674 | 8.054156e-49 | -8.615850e-47 |
Msa0132000 | Msa1451520 | 0.839157 | 1.873894e-57 | -8.615850e-47 |
Msa0132000 | Msa1459840 | 0.808002 | 3.835559e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132000 | MtrunA17_Chr1g0193331 | 77.868 | 619 | 67 | 6 | 376 | 954 | 402 | 990 | 0.0 | 813 |
Msa0132000 | MtrunA17_Chr1g0193331 | 81.375 | 451 | 50 | 4 | 104 | 543 | 18 | 445 | 0.0 | 575 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132000 | AT3G05900.2 | 72.549 | 51 | 11 | 2 | 904 | 953 | 598 | 646 | 1.78e-11 | 68.6 |
Msa0132000 | AT3G05900.1 | 72.549 | 51 | 11 | 2 | 904 | 953 | 625 | 673 | 1.89e-11 | 68.6 |
Find 192 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGCACAAGTTTCACTAAA+TGG | 0.207773 | 1_3:+62946143 | Msa0132000:CDS |
TCAAAATGGAGCGGATAATT+TGG | 0.213840 | 1_3:+62946529 | Msa0132000:CDS |
AATGTTGTTCTGGTTCTTTC+CGG | 0.224028 | 1_3:-62945563 | None:intergenic |
GGCTTGGCTGGAGTTTCTTT+TGG | 0.240569 | 1_3:-62946635 | None:intergenic |
TTCTGGAATATCTTCTATCT+TGG | 0.261359 | 1_3:-62944323 | None:intergenic |
TTGGTTTCTGTAGACTGTTC+TGG | 0.263852 | 1_3:-62945630 | None:intergenic |
GATGCCAGTGTTTCTCTAAC+AGG | 0.266826 | 1_3:-62946476 | None:intergenic |
TGCTTCTGAGCTGGCTTGGC+TGG | 0.271822 | 1_3:-62946647 | None:intergenic |
TGTTTGAATGATTGAATTCC+TGG | 0.275194 | 1_3:-62945798 | None:intergenic |
TTTGGAAGGTTCTTGGATAT+TGG | 0.282294 | 1_3:-62946617 | None:intergenic |
CTCGCTTTCCTCCTCTTTGA+TGG | 0.284125 | 1_3:-62946102 | None:intergenic |
CTTGGGTTGATTCTCTTCAT+TGG | 0.294084 | 1_3:-62944305 | None:intergenic |
ATCAAATCTTTCTCCTCTTT+CGG | 0.297872 | 1_3:-62944151 | None:intergenic |
TGCTTCTGACTCAGAGTTGT+TGG | 0.310843 | 1_3:-62945928 | None:intergenic |
GTCTCAATATCCAAGTCTTT+TGG | 0.311504 | 1_3:-62945894 | None:intergenic |
TACAAGTAGGTGAGGAAGTT+GGG | 0.326946 | 1_3:+62946018 | Msa0132000:CDS |
TCAACAATTGCAATTGCATT+TGG | 0.345919 | 1_3:-62944562 | None:intergenic |
GAAGGTTCCACCGGATTTGC+AGG | 0.347717 | 1_3:-62946182 | None:intergenic |
ATGTTTGTCTCCTTCTTCAT+TGG | 0.349888 | 1_3:-62943645 | None:intergenic |
TCTGGAATATCTTCTATCTT+GGG | 0.352677 | 1_3:-62944322 | None:intergenic |
CTGCACAAGTTTCACTAAAT+GGG | 0.354600 | 1_3:+62946144 | Msa0132000:CDS |
GGAAGTTGGGGAAACTATTA+AGG | 0.356667 | 1_3:+62946031 | Msa0132000:CDS |
AACATTGATCCTCTGTCTAA+TGG | 0.363760 | 1_3:+62945969 | Msa0132000:CDS |
GGGTTCTTCTTTCACTGTTT+CGG | 0.368570 | 1_3:-62944662 | None:intergenic |
GCCTGACCTTGTGCATTGTC+AGG | 0.371395 | 1_3:-62943890 | None:intergenic |
TGGACAGCATCAGATGCTTC+TGG | 0.372645 | 1_3:-62946326 | None:intergenic |
TGTTCCGTTGAATGTTGTTC+TGG | 0.373987 | 1_3:-62945573 | None:intergenic |
GAGGAGGAAACTATTCAAAA+TGG | 0.376197 | 1_3:+62946515 | Msa0132000:CDS |
ATCAAGAGAATTAGAATTTG+AGG | 0.394623 | 1_3:+62945677 | Msa0132000:CDS |
TCTGGAATTGAATATGTGTT+TGG | 0.397070 | 1_3:-62945612 | None:intergenic |
GGGACATTAAGGTTAAATAA+TGG | 0.398644 | 1_3:+62946774 | Msa0132000:CDS |
TGTCTCCTTCTTCATTGGCT+AGG | 0.399098 | 1_3:-62943640 | None:intergenic |
GAGCCTACAGAAACAGTAAA+AGG | 0.403452 | 1_3:+62945510 | Msa0132000:intron |
ATGTTTGTCTCCGTCTTCAT+TGG | 0.407032 | 1_3:-62943435 | None:intergenic |
ATGTTTATCTCCATCTTCAT+TGG | 0.407920 | 1_3:-62943858 | None:intergenic |
TCTACTTTCTCTGTTTCAGC+TGG | 0.408285 | 1_3:-62945738 | None:intergenic |
TTATCTGCAACAGTTTCTAA+TGG | 0.409102 | 1_3:-62944127 | None:intergenic |
TATACAGCAATTTGTGAAGC+AGG | 0.409154 | 1_3:+62943373 | Msa0132000:intron |
GTAGCCGCATGTTCTTCTCT+TGG | 0.410790 | 1_3:-62944805 | None:intergenic |
TTCTACAGCAATGACATCAT+TGG | 0.413723 | 1_3:-62945649 | None:intergenic |
GCAGCATTAACCGTTGTGTT+AGG | 0.414445 | 1_3:-62946125 | None:intergenic |
GTCTCCTTCTTCATTGGCTA+GGG | 0.415274 | 1_3:-62943639 | None:intergenic |
TCAGACAACCCCTGCAAATC+CGG | 0.423774 | 1_3:+62946172 | Msa0132000:CDS |
AAAGACAACAGCAGCGATAT+CGG | 0.428235 | 1_3:+62944609 | Msa0132000:CDS |
GAGGCCAGAGGCTCAAGCTC+GGG | 0.428516 | 1_3:-62944472 | None:intergenic |
TCATCAACTATGTCAGGTTT+CGG | 0.431384 | 1_3:-62944022 | None:intergenic |
TGAATGCTTCTGAGCTGGCT+TGG | 0.431567 | 1_3:-62946651 | None:intergenic |
AGTTGAAGATATTGTGAAGC+AGG | 0.432467 | 1_3:+62943583 | Msa0132000:CDS |
AAAGCCCGAGCTTGAGCCTC+TGG | 0.433641 | 1_3:+62944468 | Msa0132000:CDS |
TCGCCTCTCTCGAGGATACT+TGG | 0.437086 | 1_3:-62946346 | None:intergenic |
GAAAAGATTGTTGTAAAAGA+TGG | 0.441459 | 1_3:+62946218 | Msa0132000:CDS |
GCCGAAAATAACCAAAGAAC+CGG | 0.441950 | 1_3:+62944501 | Msa0132000:CDS |
GCCTGACAATGCACAAGGTC+AGG | 0.445015 | 1_3:+62943889 | Msa0132000:CDS |
ATCTCCATCTTCATTGGCTA+GGG | 0.448597 | 1_3:-62943852 | None:intergenic |
TATCTCCATCTTCATTGGCT+AGG | 0.448658 | 1_3:-62943853 | None:intergenic |
TGTGCATCATCAACTATGTC+AGG | 0.454141 | 1_3:-62944028 | None:intergenic |
TTGTTTGAATGCTTCTGAGC+TGG | 0.455331 | 1_3:-62946656 | None:intergenic |
TTCAGAAACAAGTGCCGAAA+AGG | 0.455978 | 1_3:+62944441 | Msa0132000:CDS |
GACAGAAGGTGATGAGGTTA+AGG | 0.457357 | 1_3:+62943928 | Msa0132000:CDS |
TGAGGCCAGAGGCTCAAGCT+CGG | 0.460438 | 1_3:-62944473 | None:intergenic |
TCATCTTCTGTCTTCGATGA+AGG | 0.476287 | 1_3:-62943494 | None:intergenic |
GAGACTAAGAACGACGAAGC+AGG | 0.478008 | 1_3:+62945714 | Msa0132000:CDS |
GGCTCAACTTCAGTTGCCAC+TGG | 0.485901 | 1_3:-62944952 | None:intergenic |
TTACTGAAGTTGAGGAAAAC+CGG | 0.486636 | 1_3:+62945544 | Msa0132000:CDS |
ACTGAAAATCAAGAACAAAC+AGG | 0.490972 | 1_3:+62945849 | Msa0132000:CDS |
GCTTGACCTTGTGCATTGTC+CGG | 0.493497 | 1_3:-62943467 | None:intergenic |
CTTATCGCTGTGTCATGTAC+TGG | 0.494498 | 1_3:-62944205 | None:intergenic |
TCTTCTTTCACTGTTTCGGT+AGG | 0.496000 | 1_3:-62944658 | None:intergenic |
GCTTGACTTTGTGTATTGTC+CGG | 0.497113 | 1_3:-62943677 | None:intergenic |
GAAAGAAGTTGTTGGTGATA+CGG | 0.501939 | 1_3:+62946244 | Msa0132000:CDS |
GCAATTTGTGAAGCAGGAAA+AGG | 0.504607 | 1_3:+62943379 | Msa0132000:intron |
TTTGGAGAAAGAACGAATTG+AGG | 0.504817 | 1_3:+62946547 | Msa0132000:CDS |
ATTGAATTCCTGGTTCACTT+TGG | 0.505726 | 1_3:-62945788 | None:intergenic |
AGATATTGTGAAGCAGGAAA+AGG | 0.508365 | 1_3:+62943589 | Msa0132000:CDS |
AGATATTGTGAACCCGGAAA+AGG | 0.509782 | 1_3:+62943802 | Msa0132000:CDS |
GATTTCTTCCACCTTTGTCT+CGG | 0.511527 | 1_3:-62946435 | None:intergenic |
AAGACAGCTACAATTGAAGC+AGG | 0.514361 | 1_3:+62946407 | Msa0132000:CDS |
ACAACATTCAACGGAACAAA+GGG | 0.517659 | 1_3:+62945578 | Msa0132000:CDS |
GTCACTAGTGAAAGCAAAGA+AGG | 0.517866 | 1_3:+62946700 | Msa0132000:CDS |
TGAAGTTGAGCCTACAGAAA+AGG | 0.518385 | 1_3:+62944963 | Msa0132000:CDS |
ACCTCAACTTCAGTAGCTGC+AGG | 0.519771 | 1_3:-62944862 | None:intergenic |
GATGGCAAGAAAGAAGTTGT+TGG | 0.519983 | 1_3:+62946236 | Msa0132000:CDS |
TTACAAGTAGGTGAGGAAGT+TGG | 0.520315 | 1_3:+62946017 | Msa0132000:CDS |
AATTCCCTAGCCAATGAAGA+TGG | 0.523276 | 1_3:+62943848 | Msa0132000:CDS |
TTCACATCAGATTCAGTGGA+TGG | 0.527792 | 1_3:-62944244 | None:intergenic |
GTTGATGATGCACAAAATCC+AGG | 0.528207 | 1_3:+62944037 | Msa0132000:CDS |
TCCTCAACTTCAGTAACCAC+AGG | 0.530922 | 1_3:-62945537 | None:intergenic |
TTCCTTCACATCAGATTCAG+TGG | 0.531339 | 1_3:-62944248 | None:intergenic |
AACATCACAGCAGATAGAAA+AGG | 0.534613 | 1_3:+62944270 | Msa0132000:CDS |
TGGGGAAACTATTAAGGAAG+TGG | 0.534716 | 1_3:+62946037 | Msa0132000:CDS |
AAACCTGTCCTCAGAGCCAA+AGG | 0.538748 | 1_3:+62946751 | Msa0132000:CDS |
GCTTCAACTTCAGCAGCCAC+AGG | 0.539201 | 1_3:-62945042 | None:intergenic |
TGCTGCAGAGGATGAAAAGA+AGG | 0.539585 | 1_3:+62946301 | Msa0132000:CDS |
TATTGAAGATATTGTGAACC+CGG | 0.541127 | 1_3:+62943796 | Msa0132000:CDS |
GACTAATCAATTTGAAGAGG+AGG | 0.541779 | 1_3:+62944402 | Msa0132000:CDS |
TTCTGTCTTCGATGAAGGAG+TGG | 0.541991 | 1_3:-62943489 | None:intergenic |
TGTTGCAGATAATCCGAAAG+AGG | 0.547830 | 1_3:+62944138 | Msa0132000:CDS |
GGCTACTGAAGTTGAGGCTA+CGG | 0.547997 | 1_3:+62944822 | Msa0132000:CDS |
AATTCCCTAGCCAATGAAGA+AGG | 0.551922 | 1_3:+62943635 | Msa0132000:CDS |
TTTATCTGCAGTCTCAACTT+CGG | 0.551981 | 1_3:-62944692 | None:intergenic |
AAAGCAAAGAAGGCTATCAC+TGG | 0.552054 | 1_3:+62946710 | Msa0132000:CDS |
GCCTCAATTTCAGTAACCAC+GGG | 0.552823 | 1_3:-62944772 | None:intergenic |
ATCCACTGAATCTGATGTGA+AGG | 0.554156 | 1_3:+62944246 | Msa0132000:CDS |
ATCACAAGAAATTTCACAAG+AGG | 0.555487 | 1_3:+62944531 | Msa0132000:CDS |
ACCCGTGGTTACTGAAATTG+AGG | 0.559345 | 1_3:+62944771 | Msa0132000:CDS |
TTCGGCTCTGCTGAGGCCAG+AGG | 0.560764 | 1_3:-62944484 | None:intergenic |
AACAACATTCAACGGAACAA+AGG | 0.561333 | 1_3:+62945577 | Msa0132000:CDS |
ACCTGCAGCTACTGAAGTTG+AGG | 0.561697 | 1_3:+62944861 | Msa0132000:CDS |
GGTTCACCCTCCAAAAGACT+TGG | 0.562523 | 1_3:+62945884 | Msa0132000:CDS |
GATGAAAACCAAAGTGAACC+AGG | 0.563084 | 1_3:+62945780 | Msa0132000:CDS |
ACTTCAGGAGAAGGTTCCAC+CGG | 0.563751 | 1_3:-62946191 | None:intergenic |
TTCAAACAACATTATAGCAA+AGG | 0.565058 | 1_3:+62946670 | Msa0132000:CDS |
ACAAGTAGGTGAGGAAGTTG+GGG | 0.565814 | 1_3:+62946019 | Msa0132000:CDS |
GAAGACTGAGGAACAGAATG+AGG | 0.566055 | 1_3:+62946382 | Msa0132000:CDS |
TCATCCACTTCAGTAACCAC+AGG | 0.568495 | 1_3:-62945762 | None:intergenic |
AACCTGTCCTCAGAGCCAAA+GGG | 0.568915 | 1_3:+62946752 | Msa0132000:CDS |
GTCAACCTTCGCCTCTCTCG+AGG | 0.572008 | 1_3:-62946354 | None:intergenic |
TTCTGTATTCGACGAAGGAG+TGG | 0.573402 | 1_3:-62943699 | None:intergenic |
AAGGTTCCACCGGATTTGCA+GGG | 0.573924 | 1_3:-62946181 | None:intergenic |
AGACTAAGAACGACGAAGCA+GGG | 0.578767 | 1_3:+62945715 | Msa0132000:CDS |
AAAAGTTGTTGTTGCTGCAG+AGG | 0.578943 | 1_3:+62946289 | Msa0132000:CDS |
GTCTCAACTTCGGTAACCAC+GGG | 0.579703 | 1_3:-62944682 | None:intergenic |
GTCTCAACTTCGGTAACCAC+GGG | 0.579703 | 1_3:-62944727 | None:intergenic |
AGAGGAAGAAGTGAAACCAA+AGG | 0.579767 | 1_3:+62945821 | Msa0132000:CDS |
TGAGGAGCCAGTGAAAATTG+AGG | 0.580572 | 1_3:+62946565 | Msa0132000:CDS |
GGAAAAGGACGAAGCTATTG+CGG | 0.580775 | 1_3:+62943604 | Msa0132000:CDS |
AACCTCATCACCTTCTGTCG+TGG | 0.582526 | 1_3:-62943924 | None:intergenic |
AGTATCCTCGAGAGAGGCGA+AGG | 0.587010 | 1_3:+62946349 | Msa0132000:CDS |
TCACCTTCTGTCGTGGACGA+AGG | 0.588129 | 1_3:-62943917 | None:intergenic |
TTCAACGGAACAAAGGGAAG+AGG | 0.592510 | 1_3:+62945584 | Msa0132000:CDS |
TGAAGTTGAAGCTACAGAAA+CGG | 0.594350 | 1_3:+62945053 | Msa0132000:CDS |
AATTCAATCATTCAAACAAG+AGG | 0.595584 | 1_3:+62945803 | Msa0132000:CDS |
TCCTCTGTCTAATGGAGTGG+AGG | 0.595670 | 1_3:+62945977 | Msa0132000:CDS |
TGAACCTGTTAGAGAAACAC+TGG | 0.596965 | 1_3:+62946472 | Msa0132000:CDS |
AGAACCAGAACAACATTCAA+CGG | 0.596995 | 1_3:+62945569 | Msa0132000:CDS |
ACTCCTTCGTCCACGACAGA+AGG | 0.597046 | 1_3:+62943914 | Msa0132000:CDS |
GGCTCAACTACAGTAACTGC+AGG | 0.599075 | 1_3:-62944997 | None:intergenic |
AGAGCCTGTGGTTACTGAAG+TGG | 0.604395 | 1_3:+62945758 | Msa0132000:CDS |
CTAAGTGAACAATTACAAGT+AGG | 0.604657 | 1_3:+62946005 | Msa0132000:CDS |
TGATCCTCTGTCTAATGGAG+TGG | 0.604813 | 1_3:+62945974 | Msa0132000:CDS |
TATATCTGCAGTCTCAACTT+CGG | 0.606961 | 1_3:-62944737 | None:intergenic |
TGAGACTAATCAATTTGAAG+AGG | 0.607768 | 1_3:+62944399 | Msa0132000:CDS |
GACAGCTACAATTGAAGCAG+GGG | 0.608684 | 1_3:+62946409 | Msa0132000:CDS |
ACCTGTGGTTACTGAAGTTG+AGG | 0.609370 | 1_3:+62945536 | Msa0132000:CDS |
AGCCTCAATTTCAGTAACCA+CGG | 0.610708 | 1_3:-62944773 | None:intergenic |
TCCTCCACTCCATTAGACAG+AGG | 0.612429 | 1_3:-62945978 | None:intergenic |
AGGTTCCACCGGATTTGCAG+GGG | 0.612836 | 1_3:-62946180 | None:intergenic |
AATTGTTGAATCTTCAGTCG+AGG | 0.614945 | 1_3:+62944576 | Msa0132000:CDS |
AGTCTCAACTTCGGTAACCA+CGG | 0.620579 | 1_3:-62944683 | None:intergenic |
AGTCTCAACTTCGGTAACCA+CGG | 0.620579 | 1_3:-62944728 | None:intergenic |
TGAACAATTACAAGTAGGTG+AGG | 0.622772 | 1_3:+62946010 | Msa0132000:CDS |
AATTCTCTAGCCAATGAAGA+CGG | 0.623247 | 1_3:+62943425 | Msa0132000:CDS |
AGACAAACATGATGACAAGC+CGG | 0.625194 | 1_3:+62943448 | Msa0132000:CDS |
AGACAAACATGATGACAAGC+CGG | 0.625194 | 1_3:+62943658 | Msa0132000:CDS |
TCTCCTTCTGTATTCGACGA+AGG | 0.626375 | 1_3:-62943704 | None:intergenic |
ACTCCTTCGTCGAATACAGA+AGG | 0.628116 | 1_3:+62943701 | Msa0132000:CDS |
AACAGTAAAAGGTGAACCTG+TGG | 0.629286 | 1_3:+62945521 | Msa0132000:CDS |
TAATGGCACCATCAAAGAGG+AGG | 0.633025 | 1_3:+62946094 | Msa0132000:CDS |
TTCATCGAAGACAGAAGATG+AGG | 0.633224 | 1_3:+62943496 | Msa0132000:CDS |
AGCAGGGGAGACCGAGACAA+AGG | 0.633613 | 1_3:+62946424 | Msa0132000:CDS |
GGATCAACTTCAGTAACCAC+AGG | 0.633996 | 1_3:-62944907 | None:intergenic |
TGCACAAGTTTCACTAAATG+GGG | 0.634873 | 1_3:+62946145 | Msa0132000:CDS |
GGAAAAGGACGAAGCCATTG+CGG | 0.635122 | 1_3:+62943394 | Msa0132000:CDS |
AAAAGACTTGGATATTGAGA+CGG | 0.635667 | 1_3:+62945896 | Msa0132000:CDS |
ACATGCGGCTACTGAAGTTG+AGG | 0.637223 | 1_3:+62944816 | Msa0132000:CDS |
TGGATGGTGTCTCATCATGA+TGG | 0.637874 | 1_3:-62944228 | None:intergenic |
AACAGTAAAAGAAGAACCAG+TGG | 0.638830 | 1_3:+62944936 | Msa0132000:CDS |
AGACAGCTACAATTGAAGCA+GGG | 0.640274 | 1_3:+62946408 | Msa0132000:CDS |
AGGGGAGACCGAGACAAAGG+TGG | 0.643565 | 1_3:+62946427 | Msa0132000:CDS |
GACAACCCCTGCAAATCCGG+TGG | 0.647241 | 1_3:+62946175 | Msa0132000:CDS |
ATCTAATGGCACCATCAAAG+AGG | 0.649002 | 1_3:+62946091 | Msa0132000:CDS |
ACCTGTCCTCAGAGCCAAAG+GGG | 0.650165 | 1_3:+62946753 | Msa0132000:CDS |
GGAAACTATTCAAAATGGAG+CGG | 0.651455 | 1_3:+62946520 | Msa0132000:CDS |
AACAGAGAAAGTAGAGCCTG+TGG | 0.651574 | 1_3:+62945746 | Msa0132000:CDS |
GACAAGCCGGACAATGCACA+AGG | 0.656404 | 1_3:+62943461 | Msa0132000:CDS |
AACTGTAAAAGACGAACCTG+TGG | 0.663286 | 1_3:+62945026 | Msa0132000:CDS |
AACAGTAAAAGACGAACCTG+TGG | 0.668325 | 1_3:+62944891 | Msa0132000:CDS |
TATAGTAAACAAAGAACCCG+TGG | 0.669103 | 1_3:+62944756 | Msa0132000:CDS |
GTCCACGACAGAAGGTGATG+AGG | 0.669709 | 1_3:+62943922 | Msa0132000:CDS |
AACAGTGAAAGAAGAACCCG+TGG | 0.675596 | 1_3:+62944666 | Msa0132000:CDS |
TGTCCAAGTATCCTCGAGAG+AGG | 0.676889 | 1_3:+62946343 | Msa0132000:CDS |
TAAAGTAAAAGAAGAACCCG+TGG | 0.677200 | 1_3:+62944711 | Msa0132000:CDS |
AGAACAAACAGGTGATACAG+TGG | 0.678688 | 1_3:+62945860 | Msa0132000:CDS |
ATCTTCAGTCGAGGCCAATG+AGG | 0.682162 | 1_3:+62944585 | Msa0132000:CDS |
GGAGAACACTACCAATGTCG+AGG | 0.687107 | 1_3:+62946265 | Msa0132000:CDS |
GACAAGCCTGACAATGCACA+AGG | 0.699619 | 1_3:+62943884 | Msa0132000:CDS |
AACACCAAGAGAAGAACATG+CGG | 0.701473 | 1_3:+62944801 | Msa0132000:CDS |
AATTGAGGTTGAATCCACCA+AGG | 0.707557 | 1_3:+62946580 | Msa0132000:CDS |
CCTGTCCTCAGAGCCAAAGG+GGG | 0.709648 | 1_3:+62946754 | Msa0132000:CDS |
ACAAACAGGTGATACAGTGG+AGG | 0.715313 | 1_3:+62945863 | Msa0132000:CDS |
GGAAAGCGAGCCTAACACAA+CGG | 0.720344 | 1_3:+62946115 | Msa0132000:CDS |
GGTTGACATCAAGAAGACTG+AGG | 0.735500 | 1_3:+62946370 | Msa0132000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACATTAATAGTTAAAT+CGG | - | chr1_3:62943343-62943362 | None:intergenic | 10.0% |
! | ATTTGTAAGTTTGCAGAAAA+TGG | - | chr1_3:62942710-62942729 | None:intergenic | 25.0% |
! | GAATAAGCTAAAGAACAATA+TGG | + | chr1_3:62942733-62942752 | Msa0132000:intron | 25.0% |
!! | CTGAATGTTTTCTTCTATAT+TGG | + | chr1_3:62942785-62942804 | Msa0132000:intron | 25.0% |
!! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1_3:62942933-62942952 | None:intergenic | 25.0% |
!! | AGTGAACATTTTATGAAACA+TGG | - | chr1_3:62943250-62943269 | None:intergenic | 25.0% |
! | CATATATGTATCCACAAAAA+CGG | - | chr1_3:62943302-62943321 | None:intergenic | 25.0% |
!! | ATTTCTTGTGATTCTTTTTC+CGG | - | chr1_3:62944523-62944542 | None:intergenic | 25.0% |
! | ATCAAGAGAATTAGAATTTG+AGG | + | chr1_3:62945677-62945696 | Msa0132000:CDS | 25.0% |
! | AATTCAATCATTCAAACAAG+AGG | + | chr1_3:62945803-62945822 | Msa0132000:CDS | 25.0% |
!!! | ATTAGATCCTTCACTTTTTT+CGG | - | chr1_3:62946078-62946097 | None:intergenic | 25.0% |
! | GAAAAGATTGTTGTAAAAGA+TGG | + | chr1_3:62946218-62946237 | Msa0132000:CDS | 25.0% |
! | TTCAAACAACATTATAGCAA+AGG | + | chr1_3:62946670-62946689 | Msa0132000:CDS | 25.0% |
GCAAGGTTTATATTAGCAAA+AGG | - | chr1_3:62942821-62942840 | None:intergenic | 30.0% | |
ACATAACAAGAAAACACAGA+TGG | - | chr1_3:62942854-62942873 | None:intergenic | 30.0% | |
ATTTCGATATAAGCTATCAC+TGG | + | chr1_3:62943032-62943051 | Msa0132000:intron | 30.0% | |
TTTCGATATAAGCTATCACT+GGG | + | chr1_3:62943033-62943052 | Msa0132000:intron | 30.0% | |
ATCCTAACATATCCATAGTT+TGG | + | chr1_3:62943171-62943190 | Msa0132000:intron | 30.0% | |
AAACAGTTTCACTGAAACTA+AGG | - | chr1_3:62943206-62943225 | None:intergenic | 30.0% | |
! | AGAATTAATCTTTTCCGCAA+TGG | - | chr1_3:62943411-62943430 | None:intergenic | 30.0% |
TTCAATAGAAACCTTCAATG+TGG | - | chr1_3:62943783-62943802 | None:intergenic | 30.0% | |
TATTGAAGATATTGTGAACC+CGG | + | chr1_3:62943796-62943815 | Msa0132000:CDS | 30.0% | |
ATGTTTATCTCCATCTTCAT+TGG | - | chr1_3:62943861-62943880 | None:intergenic | 30.0% | |
TTATCTGCAACAGTTTCTAA+TGG | - | chr1_3:62944130-62944149 | None:intergenic | 30.0% | |
ATCAAATCTTTCTCCTCTTT+CGG | - | chr1_3:62944154-62944173 | None:intergenic | 30.0% | |
! | TCTGGAATATCTTCTATCTT+GGG | - | chr1_3:62944325-62944344 | None:intergenic | 30.0% |
!! | TTCTGGAATATCTTCTATCT+TGG | - | chr1_3:62944326-62944345 | None:intergenic | 30.0% |
TGAGACTAATCAATTTGAAG+AGG | + | chr1_3:62944399-62944418 | Msa0132000:CDS | 30.0% | |
ATCACAAGAAATTTCACAAG+AGG | + | chr1_3:62944531-62944550 | Msa0132000:CDS | 30.0% | |
TCAACAATTGCAATTGCATT+TGG | - | chr1_3:62944565-62944584 | None:intergenic | 30.0% | |
!!! | TCTTCTTTTACTGTTTCTGT+AGG | - | chr1_3:62944931-62944950 | None:intergenic | 30.0% |
! | TCTGGAATTGAATATGTGTT+TGG | - | chr1_3:62945615-62945634 | None:intergenic | 30.0% |
TGTTTGAATGATTGAATTCC+TGG | - | chr1_3:62945801-62945820 | None:intergenic | 30.0% | |
! | TGATTTTCAGTTTCTTCCTT+TGG | - | chr1_3:62945840-62945859 | None:intergenic | 30.0% |
ACTGAAAATCAAGAACAAAC+AGG | + | chr1_3:62945849-62945868 | Msa0132000:CDS | 30.0% | |
AAAAGACTTGGATATTGAGA+CGG | + | chr1_3:62945896-62945915 | Msa0132000:CDS | 30.0% | |
CTAAGTGAACAATTACAAGT+AGG | + | chr1_3:62946005-62946024 | Msa0132000:CDS | 30.0% | |
GAAAAAAGTGAAGGATCTAA+TGG | + | chr1_3:62946077-62946096 | Msa0132000:CDS | 30.0% | |
! | ACAATCTTTTCTTCAACTTC+AGG | - | chr1_3:62946209-62946228 | None:intergenic | 30.0% |
ATCTAAATTCGAAAAAGACG+AGG | + | chr1_3:62946496-62946515 | Msa0132000:CDS | 30.0% | |
TAACAAGAAAACACAGATGG+AGG | - | chr1_3:62942851-62942870 | None:intergenic | 35.0% | |
!! | GACATTAAGCACTGATATGA+TGG | - | chr1_3:62942911-62942930 | None:intergenic | 35.0% |
AATAAGCCGAGAACAACTTA+TGG | + | chr1_3:62943066-62943085 | Msa0132000:intron | 35.0% | |
ACATCTCCATAAGTTGTTCT+CGG | - | chr1_3:62943075-62943094 | None:intergenic | 35.0% | |
!! | CTTCAAAACATCCGTTTTTG+TGG | + | chr1_3:62943288-62943307 | Msa0132000:intron | 35.0% |
TATACAGCAATTTGTGAAGC+AGG | + | chr1_3:62943373-62943392 | Msa0132000:intron | 35.0% | |
AATTCTCTAGCCAATGAAGA+CGG | + | chr1_3:62943425-62943444 | Msa0132000:CDS | 35.0% | |
! | TGATGATTCTTCAGCATTGA+AGG | + | chr1_3:62943556-62943575 | Msa0132000:intron | 35.0% |
AGTTGAAGATATTGTGAAGC+AGG | + | chr1_3:62943583-62943602 | Msa0132000:CDS | 35.0% | |
AGATATTGTGAAGCAGGAAA+AGG | + | chr1_3:62943589-62943608 | Msa0132000:CDS | 35.0% | |
ATGTTTGTCTCCTTCTTCAT+TGG | - | chr1_3:62943648-62943667 | None:intergenic | 35.0% | |
TGATGATTCTTCCACATTGA+AGG | + | chr1_3:62943769-62943788 | Msa0132000:intron | 35.0% | |
TCATCAACTATGTCAGGTTT+CGG | - | chr1_3:62944025-62944044 | None:intergenic | 35.0% | |
! | TCATCTTCTTTTTCTACACC+TGG | - | chr1_3:62944058-62944077 | None:intergenic | 35.0% |
AGAAAAAGAAGATGAAGCGA+AGG | + | chr1_3:62944063-62944082 | Msa0132000:CDS | 35.0% | |
AACATCACAGCAGATAGAAA+AGG | + | chr1_3:62944270-62944289 | Msa0132000:CDS | 35.0% | |
GACTAATCAATTTGAAGAGG+AGG | + | chr1_3:62944402-62944421 | Msa0132000:CDS | 35.0% | |
!! | TCCGGTTCTTTGGTTATTTT+CGG | - | chr1_3:62944505-62944524 | None:intergenic | 35.0% |
! | TGATTCTTTTTCCGGTTCTT+TGG | - | chr1_3:62944515-62944534 | None:intergenic | 35.0% |
AATTGTTGAATCTTCAGTCG+AGG | + | chr1_3:62944576-62944595 | Msa0132000:CDS | 35.0% | |
TTTATCTGCAGTCTCAACTT+CGG | - | chr1_3:62944695-62944714 | None:intergenic | 35.0% | |
TAAAGTAAAAGAAGAACCCG+TGG | + | chr1_3:62944711-62944730 | Msa0132000:CDS | 35.0% | |
TATATCTGCAGTCTCAACTT+CGG | - | chr1_3:62944740-62944759 | None:intergenic | 35.0% | |
TATAGTAAACAAAGAACCCG+TGG | + | chr1_3:62944756-62944775 | Msa0132000:CDS | 35.0% | |
AACAGTAAAAGAAGAACCAG+TGG | + | chr1_3:62944936-62944955 | Msa0132000:CDS | 35.0% | |
! | TCGTCTTTTACCTTTTCTGT+AGG | - | chr1_3:62944976-62944995 | None:intergenic | 35.0% |
! | TCGTCTTTTACAGTTTCTGT+AGG | - | chr1_3:62945021-62945040 | None:intergenic | 35.0% |
TGAAGTTGAAGCTACAGAAA+CGG | + | chr1_3:62945053-62945072 | Msa0132000:CDS | 35.0% | |
TGAAGTTGAAGCTACAGAAA+CGG | + | chr1_3:62945053-62945072 | Msa0132000:CDS | 35.0% | |
! | TGAAGTTGATCCTACAGAAA+CGG | + | chr1_3:62944918-62944937 | Msa0132000:CDS | 35.0% |
! | TCTTCTTTTACCGTTTCTGT+AGG | - | chr1_3:62945066-62945085 | None:intergenic | 35.0% |
! | TGAAGTTGATCCTACAGAAA+CGG | + | chr1_3:62944918-62944937 | Msa0132000:CDS | 35.0% |
! | TCTTCTTTTACCGTTTCTGT+AGG | - | chr1_3:62945066-62945085 | None:intergenic | 35.0% |
AACAGTAAAAGAAGAACACG+TGG | + | chr1_3:62945341-62945360 | Msa0132000:intron | 35.0% | |
!!! | TCGACTTTTACTGTTTCTGT+TGG | - | chr1_3:62945156-62945175 | None:intergenic | 35.0% |
! | TGAAGTTGATCCTACAGAAA+CGG | + | chr1_3:62944918-62944937 | Msa0132000:CDS | 35.0% |
! | TCTTCTTTTACCGTTTCTGT+AGG | - | chr1_3:62945066-62945085 | None:intergenic | 35.0% |
TGAAGTTCAAGCTACAGAAA+CGG | + | chr1_3:62945458-62945477 | Msa0132000:intron | 35.0% | |
!!! | TCACCTTTTACTGTTTCTGT+AGG | - | chr1_3:62945516-62945535 | None:intergenic | 35.0% |
TTACTGAAGTTGAGGAAAAC+CGG | + | chr1_3:62945544-62945563 | Msa0132000:CDS | 35.0% | |
!! | AATGTTGTTCTGGTTCTTTC+CGG | - | chr1_3:62945566-62945585 | None:intergenic | 35.0% |
AGAACCAGAACAACATTCAA+CGG | + | chr1_3:62945569-62945588 | Msa0132000:CDS | 35.0% | |
AACAACATTCAACGGAACAA+AGG | + | chr1_3:62945577-62945596 | Msa0132000:CDS | 35.0% | |
ACAACATTCAACGGAACAAA+GGG | + | chr1_3:62945578-62945597 | Msa0132000:CDS | 35.0% | |
TTCTACAGCAATGACATCAT+TGG | - | chr1_3:62945652-62945671 | None:intergenic | 35.0% | |
ATTGAATTCCTGGTTCACTT+TGG | - | chr1_3:62945791-62945810 | None:intergenic | 35.0% | |
! | CAATATCCAAGTCTTTTGGA+GGG | - | chr1_3:62945893-62945912 | None:intergenic | 35.0% |
! | TCAATATCCAAGTCTTTTGG+AGG | - | chr1_3:62945894-62945913 | None:intergenic | 35.0% |
! | GTCTCAATATCCAAGTCTTT+TGG | - | chr1_3:62945897-62945916 | None:intergenic | 35.0% |
AACATTGATCCTCTGTCTAA+TGG | + | chr1_3:62945969-62945988 | Msa0132000:CDS | 35.0% | |
TGAACAATTACAAGTAGGTG+AGG | + | chr1_3:62946010-62946029 | Msa0132000:CDS | 35.0% | |
CTGCACAAGTTTCACTAAAT+GGG | + | chr1_3:62946144-62946163 | Msa0132000:CDS | 35.0% | |
TGCACAAGTTTCACTAAATG+GGG | + | chr1_3:62946145-62946164 | Msa0132000:CDS | 35.0% | |
! | TTTTCTTCAACTTCAGGAGA+AGG | - | chr1_3:62946203-62946222 | None:intergenic | 35.0% |
!! | GAAAGAAGTTGTTGGTGATA+CGG | + | chr1_3:62946244-62946263 | Msa0132000:CDS | 35.0% |
!! | AACAACTTTTTCCTCGACAT+TGG | - | chr1_3:62946279-62946298 | None:intergenic | 35.0% |
TAAATTCGAAAAAGACGAGG+AGG | + | chr1_3:62946499-62946518 | Msa0132000:CDS | 35.0% | |
GAGGAGGAAACTATTCAAAA+TGG | + | chr1_3:62946515-62946534 | Msa0132000:CDS | 35.0% | |
GGAAACTATTCAAAATGGAG+CGG | + | chr1_3:62946520-62946539 | Msa0132000:CDS | 35.0% | |
TCAAAATGGAGCGGATAATT+TGG | + | chr1_3:62946529-62946548 | Msa0132000:CDS | 35.0% | |
TTTGGAGAAAGAACGAATTG+AGG | + | chr1_3:62946547-62946566 | Msa0132000:CDS | 35.0% | |
! | GATTCAACCTCAATTTTCAC+TGG | - | chr1_3:62946575-62946594 | None:intergenic | 35.0% |
! | TGTTGTATCATTTTCCTTGG+TGG | - | chr1_3:62946597-62946616 | None:intergenic | 35.0% |
!!! | TGGTGTTGTATCATTTTCCT+TGG | - | chr1_3:62946600-62946619 | None:intergenic | 35.0% |
TTTGGAAGGTTCTTGGATAT+TGG | - | chr1_3:62946620-62946639 | None:intergenic | 35.0% | |
!! | AGTTTCTTTTGGAAGGTTCT+TGG | - | chr1_3:62946627-62946646 | None:intergenic | 35.0% |
TCAGTGCTTAATGTCCTGTT+TGG | + | chr1_3:62942916-62942935 | Msa0132000:intron | 40.0% | |
GGCCAAACTATGGATATGTT+AGG | - | chr1_3:62943176-62943195 | None:intergenic | 40.0% | |
GCAATTTGTGAAGCAGGAAA+AGG | + | chr1_3:62943379-62943398 | Msa0132000:intron | 40.0% | |
ATGTTTGTCTCCGTCTTCAT+TGG | - | chr1_3:62943438-62943457 | None:intergenic | 40.0% | |
AGACAAACATGATGACAAGC+CGG | + | chr1_3:62943448-62943467 | Msa0132000:CDS | 40.0% | |
TCATCTTCTGTCTTCGATGA+AGG | - | chr1_3:62943497-62943516 | None:intergenic | 40.0% | |
TTCATCGAAGACAGAAGATG+AGG | + | chr1_3:62943496-62943515 | Msa0132000:CDS | 40.0% | |
TGCAGCAGAAGAGATTGAAA+AGG | + | chr1_3:62943532-62943551 | Msa0132000:intron | 40.0% | |
AATTCCCTAGCCAATGAAGA+AGG | + | chr1_3:62943635-62943654 | Msa0132000:CDS | 40.0% | |
AGACAAACATGATGACAAGC+CGG | + | chr1_3:62943448-62943467 | Msa0132000:CDS | 40.0% | |
GCTTGACTTTGTGTATTGTC+CGG | - | chr1_3:62943680-62943699 | None:intergenic | 40.0% | |
TACAGAAGGAGATGAAGTGA+AGG | + | chr1_3:62943715-62943734 | Msa0132000:intron | 40.0% | |
AGATATTGTGAACCCGGAAA+AGG | + | chr1_3:62943802-62943821 | Msa0132000:CDS | 40.0% | |
AATTCCCTAGCCAATGAAGA+TGG | + | chr1_3:62943635-62943654 | Msa0132000:CDS | 40.0% | |
! | ATCTCCATCTTCATTGGCTA+GGG | - | chr1_3:62943855-62943874 | None:intergenic | 40.0% |
! | TATCTCCATCTTCATTGGCT+AGG | - | chr1_3:62943856-62943875 | None:intergenic | 40.0% |
TGTGCATCATCAACTATGTC+AGG | - | chr1_3:62944031-62944050 | None:intergenic | 40.0% | |
!! | GTTGATGATGCACAAAATCC+AGG | + | chr1_3:62944037-62944056 | Msa0132000:CDS | 40.0% |
TGTTGCAGATAATCCGAAAG+AGG | + | chr1_3:62944138-62944157 | Msa0132000:CDS | 40.0% | |
TTCACATCAGATTCAGTGGA+TGG | - | chr1_3:62944247-62944266 | None:intergenic | 40.0% | |
ATCCACTGAATCTGATGTGA+AGG | + | chr1_3:62944246-62944265 | Msa0132000:CDS | 40.0% | |
TTCCTTCACATCAGATTCAG+TGG | - | chr1_3:62944251-62944270 | None:intergenic | 40.0% | |
!! | CTTGGGTTGATTCTCTTCAT+TGG | - | chr1_3:62944308-62944327 | None:intergenic | 40.0% |
!! | GGTGTCAGATGATTTTTCAG+TGG | - | chr1_3:62944356-62944375 | None:intergenic | 40.0% |
!! | CGCATCACTTGATTTTTCAG+TGG | - | chr1_3:62944377-62944396 | None:intergenic | 40.0% |
!! | TTCAGAAACAAGTGCCGAAA+AGG | + | chr1_3:62944441-62944460 | Msa0132000:CDS | 40.0% |
GCCGAAAATAACCAAAGAAC+CGG | + | chr1_3:62944501-62944520 | Msa0132000:CDS | 40.0% | |
! | TGCTGTTGTCTTTTCCTCAT+TGG | - | chr1_3:62944602-62944621 | None:intergenic | 40.0% |
AAAGACAACAGCAGCGATAT+CGG | + | chr1_3:62944609-62944628 | Msa0132000:CDS | 40.0% | |
! | AGGCTCTACTTCGATGTTTT+TGG | - | chr1_3:62944641-62944660 | None:intergenic | 40.0% |
TCTTCTTTCACTGTTTCGGT+AGG | - | chr1_3:62944661-62944680 | None:intergenic | 40.0% | |
GGGTTCTTCTTTCACTGTTT+CGG | - | chr1_3:62944665-62944684 | None:intergenic | 40.0% | |
AGCCTCAATTTCAGTAACCA+CGG | - | chr1_3:62944776-62944795 | None:intergenic | 40.0% | |
AACACCAAGAGAAGAACATG+CGG | + | chr1_3:62944801-62944820 | Msa0132000:CDS | 40.0% | |
! | GGTTCGTCTTTTACTGTTTC+TGG | - | chr1_3:62944889-62944908 | None:intergenic | 40.0% |
AACAGTAAAAGACGAACCTG+TGG | + | chr1_3:62944891-62944910 | Msa0132000:CDS | 40.0% | |
TGAAGTTGAGCCTACAGAAA+AGG | + | chr1_3:62944963-62944982 | Msa0132000:CDS | 40.0% | |
AACTGTAAAAGACGAACCTG+TGG | + | chr1_3:62945026-62945045 | Msa0132000:CDS | 40.0% | |
AACGGTAAAAGAAGAACCTG+TGG | + | chr1_3:62945071-62945090 | Msa0132000:intron | 40.0% | |
AACAGTAAAAGTCGAACCTG+TGG | + | chr1_3:62945161-62945180 | Msa0132000:intron | 40.0% | |
AACGGTAAAAGAAGAACCTG+TGG | + | chr1_3:62945071-62945090 | Msa0132000:intron | 40.0% | |
TGTAGTTGAGCCTACAGAAA+CGG | + | chr1_3:62945008-62945027 | Msa0132000:CDS | 40.0% | |
! | TCGTCTTTTACCGTTTCTGT+AGG | - | chr1_3:62945246-62945265 | None:intergenic | 40.0% |
GGATCAACTTCAGTAACTAC+AGG | - | chr1_3:62945270-62945289 | None:intergenic | 40.0% | |
AACAGTAAAAGTCGAACCTG+TGG | + | chr1_3:62945161-62945180 | Msa0132000:intron | 40.0% | |
AACGGTAAAAGAAGAACCTG+TGG | + | chr1_3:62945071-62945090 | Msa0132000:intron | 40.0% | |
GAGCCTACAGAAACAGTAAA+AGG | + | chr1_3:62945510-62945529 | Msa0132000:intron | 40.0% | |
AACAGTAAAAGGTGAACCTG+TGG | + | chr1_3:62945521-62945540 | Msa0132000:CDS | 40.0% | |
TGTTCCGTTGAATGTTGTTC+TGG | - | chr1_3:62945576-62945595 | None:intergenic | 40.0% | |
TTGGTTTCTGTAGACTGTTC+TGG | - | chr1_3:62945633-62945652 | None:intergenic | 40.0% | |
TCTACTTTCTCTGTTTCAGC+TGG | - | chr1_3:62945741-62945760 | None:intergenic | 40.0% | |
GATGAAAACCAAAGTGAACC+AGG | + | chr1_3:62945780-62945799 | Msa0132000:CDS | 40.0% | |
AGAGGAAGAAGTGAAACCAA+AGG | + | chr1_3:62945821-62945840 | Msa0132000:CDS | 40.0% | |
AGAACAAACAGGTGATACAG+TGG | + | chr1_3:62945860-62945879 | Msa0132000:CDS | 40.0% | |
TTACAAGTAGGTGAGGAAGT+TGG | + | chr1_3:62946017-62946036 | Msa0132000:CDS | 40.0% | |
TACAAGTAGGTGAGGAAGTT+GGG | + | chr1_3:62946018-62946037 | Msa0132000:CDS | 40.0% | |
GGAAGTTGGGGAAACTATTA+AGG | + | chr1_3:62946031-62946050 | Msa0132000:CDS | 40.0% | |
TGGGGAAACTATTAAGGAAG+TGG | + | chr1_3:62946037-62946056 | Msa0132000:CDS | 40.0% | |
!!! | ACTTTTTTCGGTTGCTTGCT+CGG | - | chr1_3:62946066-62946085 | None:intergenic | 40.0% |
CAAGCAACCGAAAAAAGTGA+AGG | + | chr1_3:62946068-62946087 | Msa0132000:CDS | 40.0% | |
ATCTAATGGCACCATCAAAG+AGG | + | chr1_3:62946091-62946110 | Msa0132000:CDS | 40.0% | |
GCTGCACAAGTTTCACTAAA+TGG | + | chr1_3:62946143-62946162 | Msa0132000:CDS | 40.0% | |
GATGGCAAGAAAGAAGTTGT+TGG | + | chr1_3:62946236-62946255 | Msa0132000:CDS | 40.0% | |
! | AAAAGTTGTTGTTGCTGCAG+AGG | + | chr1_3:62946289-62946308 | Msa0132000:CDS | 40.0% |
AAGACAGCTACAATTGAAGC+AGG | + | chr1_3:62946407-62946426 | Msa0132000:CDS | 40.0% | |
AGACAGCTACAATTGAAGCA+GGG | + | chr1_3:62946408-62946427 | Msa0132000:CDS | 40.0% | |
GATTTCTTCCACCTTTGTCT+CGG | - | chr1_3:62946438-62946457 | None:intergenic | 40.0% | |
TGAACCTGTTAGAGAAACAC+TGG | + | chr1_3:62946472-62946491 | Msa0132000:CDS | 40.0% | |
AATTGAGGTTGAATCCACCA+AGG | + | chr1_3:62946580-62946599 | Msa0132000:CDS | 40.0% | |
TTGTTTGAATGCTTCTGAGC+TGG | - | chr1_3:62946659-62946678 | None:intergenic | 40.0% | |
GTCACTAGTGAAAGCAAAGA+AGG | + | chr1_3:62946700-62946719 | Msa0132000:CDS | 40.0% | |
AAAGCAAAGAAGGCTATCAC+TGG | + | chr1_3:62946710-62946729 | Msa0132000:CDS | 40.0% | |
TTAACCTTAATGTCCCCCTT+TGG | - | chr1_3:62946770-62946789 | None:intergenic | 40.0% | |
CACTGAAACTAAGGAGCTCA+TGG | - | chr1_3:62943197-62943216 | None:intergenic | 45.0% | |
ATCGGTAGTGCTTACTGAAG+AGG | - | chr1_3:62943325-62943344 | None:intergenic | 45.0% | |
TTCTGTCTTCGATGAAGGAG+TGG | - | chr1_3:62943492-62943511 | None:intergenic | 45.0% | |
GAAGACAGAAGATGAGGTGA+AGG | + | chr1_3:62943502-62943521 | Msa0132000:intron | 45.0% | |
GGAAAAGGACGAAGCTATTG+CGG | + | chr1_3:62943604-62943623 | Msa0132000:CDS | 45.0% | |
! | GTCTCCTTCTTCATTGGCTA+GGG | - | chr1_3:62943642-62943661 | None:intergenic | 45.0% |
! | TGTCTCCTTCTTCATTGGCT+AGG | - | chr1_3:62943643-62943662 | None:intergenic | 45.0% |
TTCTGTATTCGACGAAGGAG+TGG | - | chr1_3:62943702-62943721 | None:intergenic | 45.0% | |
ACTCCTTCGTCGAATACAGA+AGG | + | chr1_3:62943701-62943720 | Msa0132000:CDS | 45.0% | |
TCTCCTTCTGTATTCGACGA+AGG | - | chr1_3:62943707-62943726 | None:intergenic | 45.0% | |
! | CAATAGCTTCGTCCTTTTCC+GGG | - | chr1_3:62943604-62943623 | None:intergenic | 45.0% |
! | GCAATAGCTTCGTCCTTTTC+CGG | - | chr1_3:62943605-62943624 | None:intergenic | 45.0% |
GACAGAAGGTGATGAGGTTA+AGG | + | chr1_3:62943928-62943947 | Msa0132000:CDS | 45.0% | |
!!! | GTTTTTTCTGCAGCAACAGC+AGG | - | chr1_3:62944094-62944113 | None:intergenic | 45.0% |
CTTATCGCTGTGTCATGTAC+TGG | - | chr1_3:62944208-62944227 | None:intergenic | 45.0% | |
TGGATGGTGTCTCATCATGA+TGG | - | chr1_3:62944231-62944250 | None:intergenic | 45.0% | |
!! | TTTTCAGTGGTGTCAGCTTC+TGG | - | chr1_3:62944343-62944362 | None:intergenic | 45.0% |
! | CTCGGGCTTTTCTTCCTTTT+CGG | - | chr1_3:62944458-62944477 | None:intergenic | 45.0% |
AACAGTGAAAGAAGAACCCG+TGG | + | chr1_3:62944666-62944685 | Msa0132000:CDS | 45.0% | |
AGTCTCAACTTCGGTAACCA+CGG | - | chr1_3:62944686-62944705 | None:intergenic | 45.0% | |
AGTCTCAACTTCGGTAACCA+CGG | - | chr1_3:62944686-62944705 | None:intergenic | 45.0% | |
ACCCGTGGTTACTGAAATTG+AGG | + | chr1_3:62944771-62944790 | Msa0132000:CDS | 45.0% | |
GCCTCAATTTCAGTAACCAC+GGG | - | chr1_3:62944775-62944794 | None:intergenic | 45.0% | |
GGATCAACTTCAGTAACCAC+AGG | - | chr1_3:62944910-62944929 | None:intergenic | 45.0% | |
GGATCAACTTCAGTAACCAC+AGG | - | chr1_3:62944910-62944929 | None:intergenic | 45.0% | |
AACGGTAAAAGAAGAAGCCG+TGG | + | chr1_3:62945296-62945315 | Msa0132000:intron | 45.0% | |
AGCTTCAACTTCAGTAGCCA+CGG | - | chr1_3:62945316-62945335 | None:intergenic | 45.0% | |
GGATCAACTTCAGTAACCAC+AGG | - | chr1_3:62944910-62944929 | None:intergenic | 45.0% | |
AACGGTAAAAGAAGAAGCCG+TGG | + | chr1_3:62945296-62945315 | Msa0132000:intron | 45.0% | |
AGCTTGAACTTCAGTAGCCA+CGG | - | chr1_3:62945451-62945470 | None:intergenic | 45.0% | |
ACCTGTGGTTACTGAAGTTG+AGG | + | chr1_3:62944906-62944925 | Msa0132000:CDS | 45.0% | |
TCCTCAACTTCAGTAACCAC+AGG | - | chr1_3:62945540-62945559 | None:intergenic | 45.0% | |
TTCAACGGAACAAAGGGAAG+AGG | + | chr1_3:62945584-62945603 | Msa0132000:CDS | 45.0% | |
AGACTAAGAACGACGAAGCA+GGG | + | chr1_3:62945715-62945734 | Msa0132000:CDS | 45.0% | |
AACAGAGAAAGTAGAGCCTG+TGG | + | chr1_3:62945746-62945765 | Msa0132000:CDS | 45.0% | |
TCATCCACTTCAGTAACCAC+AGG | - | chr1_3:62945765-62945784 | None:intergenic | 45.0% | |
ACAAACAGGTGATACAGTGG+AGG | + | chr1_3:62945863-62945882 | Msa0132000:CDS | 45.0% | |
TGCTTCTGACTCAGAGTTGT+TGG | - | chr1_3:62945931-62945950 | None:intergenic | 45.0% | |
TGATCCTCTGTCTAATGGAG+TGG | + | chr1_3:62945974-62945993 | Msa0132000:CDS | 45.0% | |
ACAAGTAGGTGAGGAAGTTG+GGG | + | chr1_3:62946019-62946038 | Msa0132000:CDS | 45.0% | |
!!! | CTTTTTTCGGTTGCTTGCTC+GGG | - | chr1_3:62946065-62946084 | None:intergenic | 45.0% |
TAATGGCACCATCAAAGAGG+AGG | + | chr1_3:62946094-62946113 | Msa0132000:CDS | 45.0% | |
GCAGCATTAACCGTTGTGTT+AGG | - | chr1_3:62946128-62946147 | None:intergenic | 45.0% | |
TGCTGCAGAGGATGAAAAGA+AGG | + | chr1_3:62946301-62946320 | Msa0132000:CDS | 45.0% | |
GGTTGACATCAAGAAGACTG+AGG | + | chr1_3:62946370-62946389 | Msa0132000:CDS | 45.0% | |
GAAGACTGAGGAACAGAATG+AGG | + | chr1_3:62946382-62946401 | Msa0132000:CDS | 45.0% | |
GACAGCTACAATTGAAGCAG+GGG | + | chr1_3:62946409-62946428 | Msa0132000:CDS | 45.0% | |
GATGCCAGTGTTTCTCTAAC+AGG | - | chr1_3:62946479-62946498 | None:intergenic | 45.0% | |
TGAGGAGCCAGTGAAAATTG+AGG | + | chr1_3:62946565-62946584 | Msa0132000:CDS | 45.0% | |
! | TGGCTGGAGTTTCTTTTGGA+AGG | - | chr1_3:62946634-62946653 | None:intergenic | 45.0% |
CAGATGGAGGAATCTGTGCA+AGG | - | chr1_3:62942838-62942857 | None:intergenic | 50.0% | |
AGGAGCTCATGGCCAAACTA+TGG | - | chr1_3:62943186-62943205 | None:intergenic | 50.0% | |
GGAAAAGGACGAAGCCATTG+CGG | + | chr1_3:62943394-62943413 | Msa0132000:CDS | 50.0% | |
GCTTGACCTTGTGCATTGTC+CGG | - | chr1_3:62943470-62943489 | None:intergenic | 50.0% | |
TTGCAGCAGGAGAGATCGAA+AGG | + | chr1_3:62943744-62943763 | Msa0132000:intron | 50.0% | |
GACAAGCCTGACAATGCACA+AGG | + | chr1_3:62943884-62943903 | Msa0132000:CDS | 50.0% | |
AACCTCATCACCTTCTGTCG+TGG | - | chr1_3:62943927-62943946 | None:intergenic | 50.0% | |
!! | GGTTATTTTCGGCTCTGCTG+AGG | - | chr1_3:62944494-62944513 | None:intergenic | 50.0% |
ATCTTCAGTCGAGGCCAATG+AGG | + | chr1_3:62944585-62944604 | Msa0132000:CDS | 50.0% | |
GTCTCAACTTCGGTAACCAC+GGG | - | chr1_3:62944685-62944704 | None:intergenic | 50.0% | |
GTCTCAACTTCGGTAACCAC+GGG | - | chr1_3:62944685-62944704 | None:intergenic | 50.0% | |
GTAGCCGCATGTTCTTCTCT+TGG | - | chr1_3:62944808-62944827 | None:intergenic | 50.0% | |
ACATGCGGCTACTGAAGTTG+AGG | + | chr1_3:62944816-62944835 | Msa0132000:CDS | 50.0% | |
GGCTACTGAAGTTGAGGCTA+CGG | + | chr1_3:62944822-62944841 | Msa0132000:CDS | 50.0% | |
ACCTGCAGCTACTGAAGTTG+AGG | + | chr1_3:62944861-62944880 | Msa0132000:CDS | 50.0% | |
ACCTCAACTTCAGTAGCTGC+AGG | - | chr1_3:62944865-62944884 | None:intergenic | 50.0% | |
GGCTCAACTACAGTAACTGC+AGG | - | chr1_3:62945000-62945019 | None:intergenic | 50.0% | |
GAGACTAAGAACGACGAAGC+AGG | + | chr1_3:62945714-62945733 | Msa0132000:CDS | 50.0% | |
AGAGCCTGTGGTTACTGAAG+TGG | + | chr1_3:62945758-62945777 | Msa0132000:CDS | 50.0% | |
GGTTCACCCTCCAAAAGACT+TGG | + | chr1_3:62945884-62945903 | Msa0132000:CDS | 50.0% | |
TCCTCTGTCTAATGGAGTGG+AGG | + | chr1_3:62945977-62945996 | Msa0132000:CDS | 50.0% | |
TCCTCCACTCCATTAGACAG+AGG | - | chr1_3:62945981-62946000 | None:intergenic | 50.0% | |
CTCGCTTTCCTCCTCTTTGA+TGG | - | chr1_3:62946105-62946124 | None:intergenic | 50.0% | |
GGAAAGCGAGCCTAACACAA+CGG | + | chr1_3:62946115-62946134 | Msa0132000:CDS | 50.0% | |
TCAGACAACCCCTGCAAATC+CGG | + | chr1_3:62946172-62946191 | Msa0132000:CDS | 50.0% | |
AAGGTTCCACCGGATTTGCA+GGG | - | chr1_3:62946184-62946203 | None:intergenic | 50.0% | |
ACTTCAGGAGAAGGTTCCAC+CGG | - | chr1_3:62946194-62946213 | None:intergenic | 50.0% | |
GGAGAACACTACCAATGTCG+AGG | + | chr1_3:62946265-62946284 | Msa0132000:CDS | 50.0% | |
TGGACAGCATCAGATGCTTC+TGG | - | chr1_3:62946329-62946348 | None:intergenic | 50.0% | |
TGTCCAAGTATCCTCGAGAG+AGG | + | chr1_3:62946343-62946362 | Msa0132000:CDS | 50.0% | |
! | GGCTTGGCTGGAGTTTCTTT+TGG | - | chr1_3:62946638-62946657 | None:intergenic | 50.0% |
TGAATGCTTCTGAGCTGGCT+TGG | - | chr1_3:62946654-62946673 | None:intergenic | 50.0% | |
!! | GAGGACAGGTTTTTGGAGGA+TGG | - | chr1_3:62946743-62946762 | None:intergenic | 50.0% |
!! | CTCTGAGGACAGGTTTTTGG+AGG | - | chr1_3:62946747-62946766 | None:intergenic | 50.0% |
!!! | TGGCTCTGAGGACAGGTTTT+TGG | - | chr1_3:62946750-62946769 | None:intergenic | 50.0% |
AAACCTGTCCTCAGAGCCAA+AGG | + | chr1_3:62946751-62946770 | Msa0132000:CDS | 50.0% | |
AACCTGTCCTCAGAGCCAAA+GGG | + | chr1_3:62946752-62946771 | Msa0132000:CDS | 50.0% | |
AGAGCCAAAGGGGGACATTA+AGG | + | chr1_3:62946763-62946782 | Msa0132000:CDS | 50.0% | |
GACAAGCCGGACAATGCACA+AGG | + | chr1_3:62943461-62943480 | Msa0132000:CDS | 55.0% | |
GCCTGACAATGCACAAGGTC+AGG | + | chr1_3:62943889-62943908 | Msa0132000:CDS | 55.0% | |
GCCTGACCTTGTGCATTGTC+AGG | - | chr1_3:62943893-62943912 | None:intergenic | 55.0% | |
ACTCCTTCGTCCACGACAGA+AGG | + | chr1_3:62943914-62943933 | Msa0132000:CDS | 55.0% | |
TCACCTTCTGTCGTGGACGA+AGG | - | chr1_3:62943920-62943939 | None:intergenic | 55.0% | |
GTCCACGACAGAAGGTGATG+AGG | + | chr1_3:62943922-62943941 | Msa0132000:CDS | 55.0% | |
GGCTCAACTTCAGTTGCCAC+TGG | - | chr1_3:62944955-62944974 | None:intergenic | 55.0% | |
GCTTCAACTTCAGCAGCCAC+AGG | - | chr1_3:62945045-62945064 | None:intergenic | 55.0% | |
GCTTCAACTTCAGCAGCCAC+AGG | - | chr1_3:62945045-62945064 | None:intergenic | 55.0% | |
GGCTCAACTACAGTTGCCAC+AGG | - | chr1_3:62945225-62945244 | None:intergenic | 55.0% | |
GGCTCAACTTCAGTAGCCAC+AGG | - | chr1_3:62945495-62945514 | None:intergenic | 55.0% | |
AGGTTCCACCGGATTTGCAG+GGG | - | chr1_3:62946183-62946202 | None:intergenic | 55.0% | |
GAAGGTTCCACCGGATTTGC+AGG | - | chr1_3:62946185-62946204 | None:intergenic | 55.0% | |
TCGCCTCTCTCGAGGATACT+TGG | - | chr1_3:62946349-62946368 | None:intergenic | 55.0% | |
AGTATCCTCGAGAGAGGCGA+AGG | + | chr1_3:62946349-62946368 | Msa0132000:CDS | 55.0% | |
ACCTGTCCTCAGAGCCAAAG+GGG | + | chr1_3:62946753-62946772 | Msa0132000:CDS | 55.0% | |
!! | AATGTCCCCCTTTGGCTCTG+AGG | - | chr1_3:62946762-62946781 | None:intergenic | 55.0% |
GTGAAGGCTGAGCTTGCAGC+AGG | + | chr1_3:62943518-62943537 | Msa0132000:intron | 60.0% | |
AAAGCCCGAGCTTGAGCCTC+TGG | + | chr1_3:62944468-62944487 | Msa0132000:CDS | 60.0% | |
TGAGGCCAGAGGCTCAAGCT+CGG | - | chr1_3:62944476-62944495 | None:intergenic | 60.0% | |
GACAACCCCTGCAAATCCGG+TGG | + | chr1_3:62946175-62946194 | Msa0132000:CDS | 60.0% | |
GTCAACCTTCGCCTCTCTCG+AGG | - | chr1_3:62946357-62946376 | None:intergenic | 60.0% | |
AGCAGGGGAGACCGAGACAA+AGG | + | chr1_3:62946424-62946443 | Msa0132000:CDS | 60.0% | |
AGGGGAGACCGAGACAAAGG+TGG | + | chr1_3:62946427-62946446 | Msa0132000:CDS | 60.0% | |
!! | TGCTTCTGAGCTGGCTTGGC+TGG | - | chr1_3:62946650-62946669 | None:intergenic | 60.0% |
CCTGTCCTCAGAGCCAAAGG+GGG | + | chr1_3:62946754-62946773 | Msa0132000:CDS | 60.0% | |
GAGGCCAGAGGCTCAAGCTC+GGG | - | chr1_3:62944475-62944494 | None:intergenic | 65.0% | |
TTCGGCTCTGCTGAGGCCAG+AGG | - | chr1_3:62944487-62944506 | None:intergenic | 65.0% | |
!! | CCCCCTTTGGCTCTGAGGAC+AGG | - | chr1_3:62946757-62946776 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 62942649 | 62946793 | 62942649 | ID=Msa0132000;Name=Msa0132000 |
chr1_3 | mRNA | 62942649 | 62946793 | 62942649 | ID=Msa0132000-mRNA-1;Parent=Msa0132000;Name=Msa0132000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|0|0|5|0|954 |
chr1_3 | exon | 62942649 | 62942657 | 62942649 | ID=Msa0132000-mRNA-1:exon:21083;Parent=Msa0132000-mRNA-1 |
chr1_3 | exon | 62943380 | 62943517 | 62943380 | ID=Msa0132000-mRNA-1:exon:21084;Parent=Msa0132000-mRNA-1 |
chr1_3 | exon | 62943578 | 62943730 | 62943578 | ID=Msa0132000-mRNA-1:exon:21085;Parent=Msa0132000-mRNA-1 |
chr1_3 | exon | 62943791 | 62945074 | 62943791 | ID=Msa0132000-mRNA-1:exon:21086;Parent=Msa0132000-mRNA-1 |
chr1_3 | exon | 62945513 | 62946793 | 62945513 | ID=Msa0132000-mRNA-1:exon:21087;Parent=Msa0132000-mRNA-1 |
chr1_3 | CDS | 62942649 | 62942657 | 62942649 | ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1 |
chr1_3 | CDS | 62943380 | 62943517 | 62943380 | ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1 |
chr1_3 | CDS | 62943578 | 62943730 | 62943578 | ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1 |
chr1_3 | CDS | 62943791 | 62945074 | 62943791 | ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1 |
chr1_3 | CDS | 62945513 | 62946793 | 62945513 | ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1 |
Gene Sequence |
Protein sequence |