AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132000 MtrunA17_Chr1g0193331 77.868 619 67 6 376 954 402 990 0.0 813
Msa0132000 MtrunA17_Chr1g0193331 81.375 451 50 4 104 543 18 445 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132000 AT3G05900.2 72.549 51 11 2 904 953 598 646 1.78e-11 68.6
Msa0132000 AT3G05900.1 72.549 51 11 2 904 953 625 673 1.89e-11 68.6

Find 192 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCACAAGTTTCACTAAA+TGG 0.207773 1_3:+62946143 Msa0132000:CDS
TCAAAATGGAGCGGATAATT+TGG 0.213840 1_3:+62946529 Msa0132000:CDS
AATGTTGTTCTGGTTCTTTC+CGG 0.224028 1_3:-62945563 None:intergenic
GGCTTGGCTGGAGTTTCTTT+TGG 0.240569 1_3:-62946635 None:intergenic
TTCTGGAATATCTTCTATCT+TGG 0.261359 1_3:-62944323 None:intergenic
TTGGTTTCTGTAGACTGTTC+TGG 0.263852 1_3:-62945630 None:intergenic
GATGCCAGTGTTTCTCTAAC+AGG 0.266826 1_3:-62946476 None:intergenic
TGCTTCTGAGCTGGCTTGGC+TGG 0.271822 1_3:-62946647 None:intergenic
TGTTTGAATGATTGAATTCC+TGG 0.275194 1_3:-62945798 None:intergenic
TTTGGAAGGTTCTTGGATAT+TGG 0.282294 1_3:-62946617 None:intergenic
CTCGCTTTCCTCCTCTTTGA+TGG 0.284125 1_3:-62946102 None:intergenic
CTTGGGTTGATTCTCTTCAT+TGG 0.294084 1_3:-62944305 None:intergenic
ATCAAATCTTTCTCCTCTTT+CGG 0.297872 1_3:-62944151 None:intergenic
TGCTTCTGACTCAGAGTTGT+TGG 0.310843 1_3:-62945928 None:intergenic
GTCTCAATATCCAAGTCTTT+TGG 0.311504 1_3:-62945894 None:intergenic
TACAAGTAGGTGAGGAAGTT+GGG 0.326946 1_3:+62946018 Msa0132000:CDS
TCAACAATTGCAATTGCATT+TGG 0.345919 1_3:-62944562 None:intergenic
GAAGGTTCCACCGGATTTGC+AGG 0.347717 1_3:-62946182 None:intergenic
ATGTTTGTCTCCTTCTTCAT+TGG 0.349888 1_3:-62943645 None:intergenic
TCTGGAATATCTTCTATCTT+GGG 0.352677 1_3:-62944322 None:intergenic
CTGCACAAGTTTCACTAAAT+GGG 0.354600 1_3:+62946144 Msa0132000:CDS
GGAAGTTGGGGAAACTATTA+AGG 0.356667 1_3:+62946031 Msa0132000:CDS
AACATTGATCCTCTGTCTAA+TGG 0.363760 1_3:+62945969 Msa0132000:CDS
GGGTTCTTCTTTCACTGTTT+CGG 0.368570 1_3:-62944662 None:intergenic
GCCTGACCTTGTGCATTGTC+AGG 0.371395 1_3:-62943890 None:intergenic
TGGACAGCATCAGATGCTTC+TGG 0.372645 1_3:-62946326 None:intergenic
TGTTCCGTTGAATGTTGTTC+TGG 0.373987 1_3:-62945573 None:intergenic
GAGGAGGAAACTATTCAAAA+TGG 0.376197 1_3:+62946515 Msa0132000:CDS
ATCAAGAGAATTAGAATTTG+AGG 0.394623 1_3:+62945677 Msa0132000:CDS
TCTGGAATTGAATATGTGTT+TGG 0.397070 1_3:-62945612 None:intergenic
GGGACATTAAGGTTAAATAA+TGG 0.398644 1_3:+62946774 Msa0132000:CDS
TGTCTCCTTCTTCATTGGCT+AGG 0.399098 1_3:-62943640 None:intergenic
GAGCCTACAGAAACAGTAAA+AGG 0.403452 1_3:+62945510 Msa0132000:intron
ATGTTTGTCTCCGTCTTCAT+TGG 0.407032 1_3:-62943435 None:intergenic
ATGTTTATCTCCATCTTCAT+TGG 0.407920 1_3:-62943858 None:intergenic
TCTACTTTCTCTGTTTCAGC+TGG 0.408285 1_3:-62945738 None:intergenic
TTATCTGCAACAGTTTCTAA+TGG 0.409102 1_3:-62944127 None:intergenic
TATACAGCAATTTGTGAAGC+AGG 0.409154 1_3:+62943373 Msa0132000:intron
GTAGCCGCATGTTCTTCTCT+TGG 0.410790 1_3:-62944805 None:intergenic
TTCTACAGCAATGACATCAT+TGG 0.413723 1_3:-62945649 None:intergenic
GCAGCATTAACCGTTGTGTT+AGG 0.414445 1_3:-62946125 None:intergenic
GTCTCCTTCTTCATTGGCTA+GGG 0.415274 1_3:-62943639 None:intergenic
TCAGACAACCCCTGCAAATC+CGG 0.423774 1_3:+62946172 Msa0132000:CDS
AAAGACAACAGCAGCGATAT+CGG 0.428235 1_3:+62944609 Msa0132000:CDS
GAGGCCAGAGGCTCAAGCTC+GGG 0.428516 1_3:-62944472 None:intergenic
TCATCAACTATGTCAGGTTT+CGG 0.431384 1_3:-62944022 None:intergenic
TGAATGCTTCTGAGCTGGCT+TGG 0.431567 1_3:-62946651 None:intergenic
AGTTGAAGATATTGTGAAGC+AGG 0.432467 1_3:+62943583 Msa0132000:CDS
AAAGCCCGAGCTTGAGCCTC+TGG 0.433641 1_3:+62944468 Msa0132000:CDS
TCGCCTCTCTCGAGGATACT+TGG 0.437086 1_3:-62946346 None:intergenic
GAAAAGATTGTTGTAAAAGA+TGG 0.441459 1_3:+62946218 Msa0132000:CDS
GCCGAAAATAACCAAAGAAC+CGG 0.441950 1_3:+62944501 Msa0132000:CDS
GCCTGACAATGCACAAGGTC+AGG 0.445015 1_3:+62943889 Msa0132000:CDS
ATCTCCATCTTCATTGGCTA+GGG 0.448597 1_3:-62943852 None:intergenic
TATCTCCATCTTCATTGGCT+AGG 0.448658 1_3:-62943853 None:intergenic
TGTGCATCATCAACTATGTC+AGG 0.454141 1_3:-62944028 None:intergenic
TTGTTTGAATGCTTCTGAGC+TGG 0.455331 1_3:-62946656 None:intergenic
TTCAGAAACAAGTGCCGAAA+AGG 0.455978 1_3:+62944441 Msa0132000:CDS
GACAGAAGGTGATGAGGTTA+AGG 0.457357 1_3:+62943928 Msa0132000:CDS
TGAGGCCAGAGGCTCAAGCT+CGG 0.460438 1_3:-62944473 None:intergenic
TCATCTTCTGTCTTCGATGA+AGG 0.476287 1_3:-62943494 None:intergenic
GAGACTAAGAACGACGAAGC+AGG 0.478008 1_3:+62945714 Msa0132000:CDS
GGCTCAACTTCAGTTGCCAC+TGG 0.485901 1_3:-62944952 None:intergenic
TTACTGAAGTTGAGGAAAAC+CGG 0.486636 1_3:+62945544 Msa0132000:CDS
ACTGAAAATCAAGAACAAAC+AGG 0.490972 1_3:+62945849 Msa0132000:CDS
GCTTGACCTTGTGCATTGTC+CGG 0.493497 1_3:-62943467 None:intergenic
CTTATCGCTGTGTCATGTAC+TGG 0.494498 1_3:-62944205 None:intergenic
TCTTCTTTCACTGTTTCGGT+AGG 0.496000 1_3:-62944658 None:intergenic
GCTTGACTTTGTGTATTGTC+CGG 0.497113 1_3:-62943677 None:intergenic
GAAAGAAGTTGTTGGTGATA+CGG 0.501939 1_3:+62946244 Msa0132000:CDS
GCAATTTGTGAAGCAGGAAA+AGG 0.504607 1_3:+62943379 Msa0132000:intron
TTTGGAGAAAGAACGAATTG+AGG 0.504817 1_3:+62946547 Msa0132000:CDS
ATTGAATTCCTGGTTCACTT+TGG 0.505726 1_3:-62945788 None:intergenic
AGATATTGTGAAGCAGGAAA+AGG 0.508365 1_3:+62943589 Msa0132000:CDS
AGATATTGTGAACCCGGAAA+AGG 0.509782 1_3:+62943802 Msa0132000:CDS
GATTTCTTCCACCTTTGTCT+CGG 0.511527 1_3:-62946435 None:intergenic
AAGACAGCTACAATTGAAGC+AGG 0.514361 1_3:+62946407 Msa0132000:CDS
ACAACATTCAACGGAACAAA+GGG 0.517659 1_3:+62945578 Msa0132000:CDS
GTCACTAGTGAAAGCAAAGA+AGG 0.517866 1_3:+62946700 Msa0132000:CDS
TGAAGTTGAGCCTACAGAAA+AGG 0.518385 1_3:+62944963 Msa0132000:CDS
ACCTCAACTTCAGTAGCTGC+AGG 0.519771 1_3:-62944862 None:intergenic
GATGGCAAGAAAGAAGTTGT+TGG 0.519983 1_3:+62946236 Msa0132000:CDS
TTACAAGTAGGTGAGGAAGT+TGG 0.520315 1_3:+62946017 Msa0132000:CDS
AATTCCCTAGCCAATGAAGA+TGG 0.523276 1_3:+62943848 Msa0132000:CDS
TTCACATCAGATTCAGTGGA+TGG 0.527792 1_3:-62944244 None:intergenic
GTTGATGATGCACAAAATCC+AGG 0.528207 1_3:+62944037 Msa0132000:CDS
TCCTCAACTTCAGTAACCAC+AGG 0.530922 1_3:-62945537 None:intergenic
TTCCTTCACATCAGATTCAG+TGG 0.531339 1_3:-62944248 None:intergenic
AACATCACAGCAGATAGAAA+AGG 0.534613 1_3:+62944270 Msa0132000:CDS
TGGGGAAACTATTAAGGAAG+TGG 0.534716 1_3:+62946037 Msa0132000:CDS
AAACCTGTCCTCAGAGCCAA+AGG 0.538748 1_3:+62946751 Msa0132000:CDS
GCTTCAACTTCAGCAGCCAC+AGG 0.539201 1_3:-62945042 None:intergenic
TGCTGCAGAGGATGAAAAGA+AGG 0.539585 1_3:+62946301 Msa0132000:CDS
TATTGAAGATATTGTGAACC+CGG 0.541127 1_3:+62943796 Msa0132000:CDS
GACTAATCAATTTGAAGAGG+AGG 0.541779 1_3:+62944402 Msa0132000:CDS
TTCTGTCTTCGATGAAGGAG+TGG 0.541991 1_3:-62943489 None:intergenic
TGTTGCAGATAATCCGAAAG+AGG 0.547830 1_3:+62944138 Msa0132000:CDS
GGCTACTGAAGTTGAGGCTA+CGG 0.547997 1_3:+62944822 Msa0132000:CDS
AATTCCCTAGCCAATGAAGA+AGG 0.551922 1_3:+62943635 Msa0132000:CDS
TTTATCTGCAGTCTCAACTT+CGG 0.551981 1_3:-62944692 None:intergenic
AAAGCAAAGAAGGCTATCAC+TGG 0.552054 1_3:+62946710 Msa0132000:CDS
GCCTCAATTTCAGTAACCAC+GGG 0.552823 1_3:-62944772 None:intergenic
ATCCACTGAATCTGATGTGA+AGG 0.554156 1_3:+62944246 Msa0132000:CDS
ATCACAAGAAATTTCACAAG+AGG 0.555487 1_3:+62944531 Msa0132000:CDS
ACCCGTGGTTACTGAAATTG+AGG 0.559345 1_3:+62944771 Msa0132000:CDS
TTCGGCTCTGCTGAGGCCAG+AGG 0.560764 1_3:-62944484 None:intergenic
AACAACATTCAACGGAACAA+AGG 0.561333 1_3:+62945577 Msa0132000:CDS
ACCTGCAGCTACTGAAGTTG+AGG 0.561697 1_3:+62944861 Msa0132000:CDS
GGTTCACCCTCCAAAAGACT+TGG 0.562523 1_3:+62945884 Msa0132000:CDS
GATGAAAACCAAAGTGAACC+AGG 0.563084 1_3:+62945780 Msa0132000:CDS
ACTTCAGGAGAAGGTTCCAC+CGG 0.563751 1_3:-62946191 None:intergenic
TTCAAACAACATTATAGCAA+AGG 0.565058 1_3:+62946670 Msa0132000:CDS
ACAAGTAGGTGAGGAAGTTG+GGG 0.565814 1_3:+62946019 Msa0132000:CDS
GAAGACTGAGGAACAGAATG+AGG 0.566055 1_3:+62946382 Msa0132000:CDS
TCATCCACTTCAGTAACCAC+AGG 0.568495 1_3:-62945762 None:intergenic
AACCTGTCCTCAGAGCCAAA+GGG 0.568915 1_3:+62946752 Msa0132000:CDS
GTCAACCTTCGCCTCTCTCG+AGG 0.572008 1_3:-62946354 None:intergenic
TTCTGTATTCGACGAAGGAG+TGG 0.573402 1_3:-62943699 None:intergenic
AAGGTTCCACCGGATTTGCA+GGG 0.573924 1_3:-62946181 None:intergenic
AGACTAAGAACGACGAAGCA+GGG 0.578767 1_3:+62945715 Msa0132000:CDS
AAAAGTTGTTGTTGCTGCAG+AGG 0.578943 1_3:+62946289 Msa0132000:CDS
GTCTCAACTTCGGTAACCAC+GGG 0.579703 1_3:-62944682 None:intergenic
GTCTCAACTTCGGTAACCAC+GGG 0.579703 1_3:-62944727 None:intergenic
AGAGGAAGAAGTGAAACCAA+AGG 0.579767 1_3:+62945821 Msa0132000:CDS
TGAGGAGCCAGTGAAAATTG+AGG 0.580572 1_3:+62946565 Msa0132000:CDS
GGAAAAGGACGAAGCTATTG+CGG 0.580775 1_3:+62943604 Msa0132000:CDS
AACCTCATCACCTTCTGTCG+TGG 0.582526 1_3:-62943924 None:intergenic
AGTATCCTCGAGAGAGGCGA+AGG 0.587010 1_3:+62946349 Msa0132000:CDS
TCACCTTCTGTCGTGGACGA+AGG 0.588129 1_3:-62943917 None:intergenic
TTCAACGGAACAAAGGGAAG+AGG 0.592510 1_3:+62945584 Msa0132000:CDS
TGAAGTTGAAGCTACAGAAA+CGG 0.594350 1_3:+62945053 Msa0132000:CDS
AATTCAATCATTCAAACAAG+AGG 0.595584 1_3:+62945803 Msa0132000:CDS
TCCTCTGTCTAATGGAGTGG+AGG 0.595670 1_3:+62945977 Msa0132000:CDS
TGAACCTGTTAGAGAAACAC+TGG 0.596965 1_3:+62946472 Msa0132000:CDS
AGAACCAGAACAACATTCAA+CGG 0.596995 1_3:+62945569 Msa0132000:CDS
ACTCCTTCGTCCACGACAGA+AGG 0.597046 1_3:+62943914 Msa0132000:CDS
GGCTCAACTACAGTAACTGC+AGG 0.599075 1_3:-62944997 None:intergenic
AGAGCCTGTGGTTACTGAAG+TGG 0.604395 1_3:+62945758 Msa0132000:CDS
CTAAGTGAACAATTACAAGT+AGG 0.604657 1_3:+62946005 Msa0132000:CDS
TGATCCTCTGTCTAATGGAG+TGG 0.604813 1_3:+62945974 Msa0132000:CDS
TATATCTGCAGTCTCAACTT+CGG 0.606961 1_3:-62944737 None:intergenic
TGAGACTAATCAATTTGAAG+AGG 0.607768 1_3:+62944399 Msa0132000:CDS
GACAGCTACAATTGAAGCAG+GGG 0.608684 1_3:+62946409 Msa0132000:CDS
ACCTGTGGTTACTGAAGTTG+AGG 0.609370 1_3:+62945536 Msa0132000:CDS
AGCCTCAATTTCAGTAACCA+CGG 0.610708 1_3:-62944773 None:intergenic
TCCTCCACTCCATTAGACAG+AGG 0.612429 1_3:-62945978 None:intergenic
AGGTTCCACCGGATTTGCAG+GGG 0.612836 1_3:-62946180 None:intergenic
AATTGTTGAATCTTCAGTCG+AGG 0.614945 1_3:+62944576 Msa0132000:CDS
AGTCTCAACTTCGGTAACCA+CGG 0.620579 1_3:-62944683 None:intergenic
AGTCTCAACTTCGGTAACCA+CGG 0.620579 1_3:-62944728 None:intergenic
TGAACAATTACAAGTAGGTG+AGG 0.622772 1_3:+62946010 Msa0132000:CDS
AATTCTCTAGCCAATGAAGA+CGG 0.623247 1_3:+62943425 Msa0132000:CDS
AGACAAACATGATGACAAGC+CGG 0.625194 1_3:+62943448 Msa0132000:CDS
AGACAAACATGATGACAAGC+CGG 0.625194 1_3:+62943658 Msa0132000:CDS
TCTCCTTCTGTATTCGACGA+AGG 0.626375 1_3:-62943704 None:intergenic
ACTCCTTCGTCGAATACAGA+AGG 0.628116 1_3:+62943701 Msa0132000:CDS
AACAGTAAAAGGTGAACCTG+TGG 0.629286 1_3:+62945521 Msa0132000:CDS
TAATGGCACCATCAAAGAGG+AGG 0.633025 1_3:+62946094 Msa0132000:CDS
TTCATCGAAGACAGAAGATG+AGG 0.633224 1_3:+62943496 Msa0132000:CDS
AGCAGGGGAGACCGAGACAA+AGG 0.633613 1_3:+62946424 Msa0132000:CDS
GGATCAACTTCAGTAACCAC+AGG 0.633996 1_3:-62944907 None:intergenic
TGCACAAGTTTCACTAAATG+GGG 0.634873 1_3:+62946145 Msa0132000:CDS
GGAAAAGGACGAAGCCATTG+CGG 0.635122 1_3:+62943394 Msa0132000:CDS
AAAAGACTTGGATATTGAGA+CGG 0.635667 1_3:+62945896 Msa0132000:CDS
ACATGCGGCTACTGAAGTTG+AGG 0.637223 1_3:+62944816 Msa0132000:CDS
TGGATGGTGTCTCATCATGA+TGG 0.637874 1_3:-62944228 None:intergenic
AACAGTAAAAGAAGAACCAG+TGG 0.638830 1_3:+62944936 Msa0132000:CDS
AGACAGCTACAATTGAAGCA+GGG 0.640274 1_3:+62946408 Msa0132000:CDS
AGGGGAGACCGAGACAAAGG+TGG 0.643565 1_3:+62946427 Msa0132000:CDS
GACAACCCCTGCAAATCCGG+TGG 0.647241 1_3:+62946175 Msa0132000:CDS
ATCTAATGGCACCATCAAAG+AGG 0.649002 1_3:+62946091 Msa0132000:CDS
ACCTGTCCTCAGAGCCAAAG+GGG 0.650165 1_3:+62946753 Msa0132000:CDS
GGAAACTATTCAAAATGGAG+CGG 0.651455 1_3:+62946520 Msa0132000:CDS
AACAGAGAAAGTAGAGCCTG+TGG 0.651574 1_3:+62945746 Msa0132000:CDS
GACAAGCCGGACAATGCACA+AGG 0.656404 1_3:+62943461 Msa0132000:CDS
AACTGTAAAAGACGAACCTG+TGG 0.663286 1_3:+62945026 Msa0132000:CDS
AACAGTAAAAGACGAACCTG+TGG 0.668325 1_3:+62944891 Msa0132000:CDS
TATAGTAAACAAAGAACCCG+TGG 0.669103 1_3:+62944756 Msa0132000:CDS
GTCCACGACAGAAGGTGATG+AGG 0.669709 1_3:+62943922 Msa0132000:CDS
AACAGTGAAAGAAGAACCCG+TGG 0.675596 1_3:+62944666 Msa0132000:CDS
TGTCCAAGTATCCTCGAGAG+AGG 0.676889 1_3:+62946343 Msa0132000:CDS
TAAAGTAAAAGAAGAACCCG+TGG 0.677200 1_3:+62944711 Msa0132000:CDS
AGAACAAACAGGTGATACAG+TGG 0.678688 1_3:+62945860 Msa0132000:CDS
ATCTTCAGTCGAGGCCAATG+AGG 0.682162 1_3:+62944585 Msa0132000:CDS
GGAGAACACTACCAATGTCG+AGG 0.687107 1_3:+62946265 Msa0132000:CDS
GACAAGCCTGACAATGCACA+AGG 0.699619 1_3:+62943884 Msa0132000:CDS
AACACCAAGAGAAGAACATG+CGG 0.701473 1_3:+62944801 Msa0132000:CDS
AATTGAGGTTGAATCCACCA+AGG 0.707557 1_3:+62946580 Msa0132000:CDS
CCTGTCCTCAGAGCCAAAGG+GGG 0.709648 1_3:+62946754 Msa0132000:CDS
ACAAACAGGTGATACAGTGG+AGG 0.715313 1_3:+62945863 Msa0132000:CDS
GGAAAGCGAGCCTAACACAA+CGG 0.720344 1_3:+62946115 Msa0132000:CDS
GGTTGACATCAAGAAGACTG+AGG 0.735500 1_3:+62946370 Msa0132000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTAATAGTTAAAT+CGG - chr1_3:62943343-62943362 None:intergenic 10.0%
! ATTTGTAAGTTTGCAGAAAA+TGG - chr1_3:62942710-62942729 None:intergenic 25.0%
! GAATAAGCTAAAGAACAATA+TGG + chr1_3:62942733-62942752 Msa0132000:intron 25.0%
!! CTGAATGTTTTCTTCTATAT+TGG + chr1_3:62942785-62942804 Msa0132000:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr1_3:62942933-62942952 None:intergenic 25.0%
!! AGTGAACATTTTATGAAACA+TGG - chr1_3:62943250-62943269 None:intergenic 25.0%
! CATATATGTATCCACAAAAA+CGG - chr1_3:62943302-62943321 None:intergenic 25.0%
!! ATTTCTTGTGATTCTTTTTC+CGG - chr1_3:62944523-62944542 None:intergenic 25.0%
! ATCAAGAGAATTAGAATTTG+AGG + chr1_3:62945677-62945696 Msa0132000:CDS 25.0%
! AATTCAATCATTCAAACAAG+AGG + chr1_3:62945803-62945822 Msa0132000:CDS 25.0%
!!! ATTAGATCCTTCACTTTTTT+CGG - chr1_3:62946078-62946097 None:intergenic 25.0%
! GAAAAGATTGTTGTAAAAGA+TGG + chr1_3:62946218-62946237 Msa0132000:CDS 25.0%
! TTCAAACAACATTATAGCAA+AGG + chr1_3:62946670-62946689 Msa0132000:CDS 25.0%
GCAAGGTTTATATTAGCAAA+AGG - chr1_3:62942821-62942840 None:intergenic 30.0%
ACATAACAAGAAAACACAGA+TGG - chr1_3:62942854-62942873 None:intergenic 30.0%
ATTTCGATATAAGCTATCAC+TGG + chr1_3:62943032-62943051 Msa0132000:intron 30.0%
TTTCGATATAAGCTATCACT+GGG + chr1_3:62943033-62943052 Msa0132000:intron 30.0%
ATCCTAACATATCCATAGTT+TGG + chr1_3:62943171-62943190 Msa0132000:intron 30.0%
AAACAGTTTCACTGAAACTA+AGG - chr1_3:62943206-62943225 None:intergenic 30.0%
! AGAATTAATCTTTTCCGCAA+TGG - chr1_3:62943411-62943430 None:intergenic 30.0%
TTCAATAGAAACCTTCAATG+TGG - chr1_3:62943783-62943802 None:intergenic 30.0%
TATTGAAGATATTGTGAACC+CGG + chr1_3:62943796-62943815 Msa0132000:CDS 30.0%
ATGTTTATCTCCATCTTCAT+TGG - chr1_3:62943861-62943880 None:intergenic 30.0%
TTATCTGCAACAGTTTCTAA+TGG - chr1_3:62944130-62944149 None:intergenic 30.0%
ATCAAATCTTTCTCCTCTTT+CGG - chr1_3:62944154-62944173 None:intergenic 30.0%
! TCTGGAATATCTTCTATCTT+GGG - chr1_3:62944325-62944344 None:intergenic 30.0%
!! TTCTGGAATATCTTCTATCT+TGG - chr1_3:62944326-62944345 None:intergenic 30.0%
TGAGACTAATCAATTTGAAG+AGG + chr1_3:62944399-62944418 Msa0132000:CDS 30.0%
ATCACAAGAAATTTCACAAG+AGG + chr1_3:62944531-62944550 Msa0132000:CDS 30.0%
TCAACAATTGCAATTGCATT+TGG - chr1_3:62944565-62944584 None:intergenic 30.0%
!!! TCTTCTTTTACTGTTTCTGT+AGG - chr1_3:62944931-62944950 None:intergenic 30.0%
! TCTGGAATTGAATATGTGTT+TGG - chr1_3:62945615-62945634 None:intergenic 30.0%
TGTTTGAATGATTGAATTCC+TGG - chr1_3:62945801-62945820 None:intergenic 30.0%
! TGATTTTCAGTTTCTTCCTT+TGG - chr1_3:62945840-62945859 None:intergenic 30.0%
ACTGAAAATCAAGAACAAAC+AGG + chr1_3:62945849-62945868 Msa0132000:CDS 30.0%
AAAAGACTTGGATATTGAGA+CGG + chr1_3:62945896-62945915 Msa0132000:CDS 30.0%
CTAAGTGAACAATTACAAGT+AGG + chr1_3:62946005-62946024 Msa0132000:CDS 30.0%
GAAAAAAGTGAAGGATCTAA+TGG + chr1_3:62946077-62946096 Msa0132000:CDS 30.0%
! ACAATCTTTTCTTCAACTTC+AGG - chr1_3:62946209-62946228 None:intergenic 30.0%
ATCTAAATTCGAAAAAGACG+AGG + chr1_3:62946496-62946515 Msa0132000:CDS 30.0%
TAACAAGAAAACACAGATGG+AGG - chr1_3:62942851-62942870 None:intergenic 35.0%
!! GACATTAAGCACTGATATGA+TGG - chr1_3:62942911-62942930 None:intergenic 35.0%
AATAAGCCGAGAACAACTTA+TGG + chr1_3:62943066-62943085 Msa0132000:intron 35.0%
ACATCTCCATAAGTTGTTCT+CGG - chr1_3:62943075-62943094 None:intergenic 35.0%
!! CTTCAAAACATCCGTTTTTG+TGG + chr1_3:62943288-62943307 Msa0132000:intron 35.0%
TATACAGCAATTTGTGAAGC+AGG + chr1_3:62943373-62943392 Msa0132000:intron 35.0%
AATTCTCTAGCCAATGAAGA+CGG + chr1_3:62943425-62943444 Msa0132000:CDS 35.0%
! TGATGATTCTTCAGCATTGA+AGG + chr1_3:62943556-62943575 Msa0132000:intron 35.0%
AGTTGAAGATATTGTGAAGC+AGG + chr1_3:62943583-62943602 Msa0132000:CDS 35.0%
AGATATTGTGAAGCAGGAAA+AGG + chr1_3:62943589-62943608 Msa0132000:CDS 35.0%
ATGTTTGTCTCCTTCTTCAT+TGG - chr1_3:62943648-62943667 None:intergenic 35.0%
TGATGATTCTTCCACATTGA+AGG + chr1_3:62943769-62943788 Msa0132000:intron 35.0%
TCATCAACTATGTCAGGTTT+CGG - chr1_3:62944025-62944044 None:intergenic 35.0%
! TCATCTTCTTTTTCTACACC+TGG - chr1_3:62944058-62944077 None:intergenic 35.0%
AGAAAAAGAAGATGAAGCGA+AGG + chr1_3:62944063-62944082 Msa0132000:CDS 35.0%
AACATCACAGCAGATAGAAA+AGG + chr1_3:62944270-62944289 Msa0132000:CDS 35.0%
GACTAATCAATTTGAAGAGG+AGG + chr1_3:62944402-62944421 Msa0132000:CDS 35.0%
!! TCCGGTTCTTTGGTTATTTT+CGG - chr1_3:62944505-62944524 None:intergenic 35.0%
! TGATTCTTTTTCCGGTTCTT+TGG - chr1_3:62944515-62944534 None:intergenic 35.0%
AATTGTTGAATCTTCAGTCG+AGG + chr1_3:62944576-62944595 Msa0132000:CDS 35.0%
TTTATCTGCAGTCTCAACTT+CGG - chr1_3:62944695-62944714 None:intergenic 35.0%
TAAAGTAAAAGAAGAACCCG+TGG + chr1_3:62944711-62944730 Msa0132000:CDS 35.0%
TATATCTGCAGTCTCAACTT+CGG - chr1_3:62944740-62944759 None:intergenic 35.0%
TATAGTAAACAAAGAACCCG+TGG + chr1_3:62944756-62944775 Msa0132000:CDS 35.0%
AACAGTAAAAGAAGAACCAG+TGG + chr1_3:62944936-62944955 Msa0132000:CDS 35.0%
! TCGTCTTTTACCTTTTCTGT+AGG - chr1_3:62944976-62944995 None:intergenic 35.0%
! TCGTCTTTTACAGTTTCTGT+AGG - chr1_3:62945021-62945040 None:intergenic 35.0%
TGAAGTTGAAGCTACAGAAA+CGG + chr1_3:62945053-62945072 Msa0132000:CDS 35.0%
TGAAGTTGAAGCTACAGAAA+CGG + chr1_3:62945053-62945072 Msa0132000:CDS 35.0%
! TGAAGTTGATCCTACAGAAA+CGG + chr1_3:62944918-62944937 Msa0132000:CDS 35.0%
! TCTTCTTTTACCGTTTCTGT+AGG - chr1_3:62945066-62945085 None:intergenic 35.0%
! TGAAGTTGATCCTACAGAAA+CGG + chr1_3:62944918-62944937 Msa0132000:CDS 35.0%
! TCTTCTTTTACCGTTTCTGT+AGG - chr1_3:62945066-62945085 None:intergenic 35.0%
AACAGTAAAAGAAGAACACG+TGG + chr1_3:62945341-62945360 Msa0132000:intron 35.0%
!!! TCGACTTTTACTGTTTCTGT+TGG - chr1_3:62945156-62945175 None:intergenic 35.0%
! TGAAGTTGATCCTACAGAAA+CGG + chr1_3:62944918-62944937 Msa0132000:CDS 35.0%
! TCTTCTTTTACCGTTTCTGT+AGG - chr1_3:62945066-62945085 None:intergenic 35.0%
TGAAGTTCAAGCTACAGAAA+CGG + chr1_3:62945458-62945477 Msa0132000:intron 35.0%
!!! TCACCTTTTACTGTTTCTGT+AGG - chr1_3:62945516-62945535 None:intergenic 35.0%
TTACTGAAGTTGAGGAAAAC+CGG + chr1_3:62945544-62945563 Msa0132000:CDS 35.0%
!! AATGTTGTTCTGGTTCTTTC+CGG - chr1_3:62945566-62945585 None:intergenic 35.0%
AGAACCAGAACAACATTCAA+CGG + chr1_3:62945569-62945588 Msa0132000:CDS 35.0%
AACAACATTCAACGGAACAA+AGG + chr1_3:62945577-62945596 Msa0132000:CDS 35.0%
ACAACATTCAACGGAACAAA+GGG + chr1_3:62945578-62945597 Msa0132000:CDS 35.0%
TTCTACAGCAATGACATCAT+TGG - chr1_3:62945652-62945671 None:intergenic 35.0%
ATTGAATTCCTGGTTCACTT+TGG - chr1_3:62945791-62945810 None:intergenic 35.0%
! CAATATCCAAGTCTTTTGGA+GGG - chr1_3:62945893-62945912 None:intergenic 35.0%
! TCAATATCCAAGTCTTTTGG+AGG - chr1_3:62945894-62945913 None:intergenic 35.0%
! GTCTCAATATCCAAGTCTTT+TGG - chr1_3:62945897-62945916 None:intergenic 35.0%
AACATTGATCCTCTGTCTAA+TGG + chr1_3:62945969-62945988 Msa0132000:CDS 35.0%
TGAACAATTACAAGTAGGTG+AGG + chr1_3:62946010-62946029 Msa0132000:CDS 35.0%
CTGCACAAGTTTCACTAAAT+GGG + chr1_3:62946144-62946163 Msa0132000:CDS 35.0%
TGCACAAGTTTCACTAAATG+GGG + chr1_3:62946145-62946164 Msa0132000:CDS 35.0%
! TTTTCTTCAACTTCAGGAGA+AGG - chr1_3:62946203-62946222 None:intergenic 35.0%
!! GAAAGAAGTTGTTGGTGATA+CGG + chr1_3:62946244-62946263 Msa0132000:CDS 35.0%
!! AACAACTTTTTCCTCGACAT+TGG - chr1_3:62946279-62946298 None:intergenic 35.0%
TAAATTCGAAAAAGACGAGG+AGG + chr1_3:62946499-62946518 Msa0132000:CDS 35.0%
GAGGAGGAAACTATTCAAAA+TGG + chr1_3:62946515-62946534 Msa0132000:CDS 35.0%
GGAAACTATTCAAAATGGAG+CGG + chr1_3:62946520-62946539 Msa0132000:CDS 35.0%
TCAAAATGGAGCGGATAATT+TGG + chr1_3:62946529-62946548 Msa0132000:CDS 35.0%
TTTGGAGAAAGAACGAATTG+AGG + chr1_3:62946547-62946566 Msa0132000:CDS 35.0%
! GATTCAACCTCAATTTTCAC+TGG - chr1_3:62946575-62946594 None:intergenic 35.0%
! TGTTGTATCATTTTCCTTGG+TGG - chr1_3:62946597-62946616 None:intergenic 35.0%
!!! TGGTGTTGTATCATTTTCCT+TGG - chr1_3:62946600-62946619 None:intergenic 35.0%
TTTGGAAGGTTCTTGGATAT+TGG - chr1_3:62946620-62946639 None:intergenic 35.0%
!! AGTTTCTTTTGGAAGGTTCT+TGG - chr1_3:62946627-62946646 None:intergenic 35.0%
TCAGTGCTTAATGTCCTGTT+TGG + chr1_3:62942916-62942935 Msa0132000:intron 40.0%
GGCCAAACTATGGATATGTT+AGG - chr1_3:62943176-62943195 None:intergenic 40.0%
GCAATTTGTGAAGCAGGAAA+AGG + chr1_3:62943379-62943398 Msa0132000:intron 40.0%
ATGTTTGTCTCCGTCTTCAT+TGG - chr1_3:62943438-62943457 None:intergenic 40.0%
AGACAAACATGATGACAAGC+CGG + chr1_3:62943448-62943467 Msa0132000:CDS 40.0%
TCATCTTCTGTCTTCGATGA+AGG - chr1_3:62943497-62943516 None:intergenic 40.0%
TTCATCGAAGACAGAAGATG+AGG + chr1_3:62943496-62943515 Msa0132000:CDS 40.0%
TGCAGCAGAAGAGATTGAAA+AGG + chr1_3:62943532-62943551 Msa0132000:intron 40.0%
AATTCCCTAGCCAATGAAGA+AGG + chr1_3:62943635-62943654 Msa0132000:CDS 40.0%
AGACAAACATGATGACAAGC+CGG + chr1_3:62943448-62943467 Msa0132000:CDS 40.0%
GCTTGACTTTGTGTATTGTC+CGG - chr1_3:62943680-62943699 None:intergenic 40.0%
TACAGAAGGAGATGAAGTGA+AGG + chr1_3:62943715-62943734 Msa0132000:intron 40.0%
AGATATTGTGAACCCGGAAA+AGG + chr1_3:62943802-62943821 Msa0132000:CDS 40.0%
AATTCCCTAGCCAATGAAGA+TGG + chr1_3:62943635-62943654 Msa0132000:CDS 40.0%
! ATCTCCATCTTCATTGGCTA+GGG - chr1_3:62943855-62943874 None:intergenic 40.0%
! TATCTCCATCTTCATTGGCT+AGG - chr1_3:62943856-62943875 None:intergenic 40.0%
TGTGCATCATCAACTATGTC+AGG - chr1_3:62944031-62944050 None:intergenic 40.0%
!! GTTGATGATGCACAAAATCC+AGG + chr1_3:62944037-62944056 Msa0132000:CDS 40.0%
TGTTGCAGATAATCCGAAAG+AGG + chr1_3:62944138-62944157 Msa0132000:CDS 40.0%
TTCACATCAGATTCAGTGGA+TGG - chr1_3:62944247-62944266 None:intergenic 40.0%
ATCCACTGAATCTGATGTGA+AGG + chr1_3:62944246-62944265 Msa0132000:CDS 40.0%
TTCCTTCACATCAGATTCAG+TGG - chr1_3:62944251-62944270 None:intergenic 40.0%
!! CTTGGGTTGATTCTCTTCAT+TGG - chr1_3:62944308-62944327 None:intergenic 40.0%
!! GGTGTCAGATGATTTTTCAG+TGG - chr1_3:62944356-62944375 None:intergenic 40.0%
!! CGCATCACTTGATTTTTCAG+TGG - chr1_3:62944377-62944396 None:intergenic 40.0%
!! TTCAGAAACAAGTGCCGAAA+AGG + chr1_3:62944441-62944460 Msa0132000:CDS 40.0%
GCCGAAAATAACCAAAGAAC+CGG + chr1_3:62944501-62944520 Msa0132000:CDS 40.0%
! TGCTGTTGTCTTTTCCTCAT+TGG - chr1_3:62944602-62944621 None:intergenic 40.0%
AAAGACAACAGCAGCGATAT+CGG + chr1_3:62944609-62944628 Msa0132000:CDS 40.0%
! AGGCTCTACTTCGATGTTTT+TGG - chr1_3:62944641-62944660 None:intergenic 40.0%
TCTTCTTTCACTGTTTCGGT+AGG - chr1_3:62944661-62944680 None:intergenic 40.0%
GGGTTCTTCTTTCACTGTTT+CGG - chr1_3:62944665-62944684 None:intergenic 40.0%
AGCCTCAATTTCAGTAACCA+CGG - chr1_3:62944776-62944795 None:intergenic 40.0%
AACACCAAGAGAAGAACATG+CGG + chr1_3:62944801-62944820 Msa0132000:CDS 40.0%
! GGTTCGTCTTTTACTGTTTC+TGG - chr1_3:62944889-62944908 None:intergenic 40.0%
AACAGTAAAAGACGAACCTG+TGG + chr1_3:62944891-62944910 Msa0132000:CDS 40.0%
TGAAGTTGAGCCTACAGAAA+AGG + chr1_3:62944963-62944982 Msa0132000:CDS 40.0%
AACTGTAAAAGACGAACCTG+TGG + chr1_3:62945026-62945045 Msa0132000:CDS 40.0%
AACGGTAAAAGAAGAACCTG+TGG + chr1_3:62945071-62945090 Msa0132000:intron 40.0%
AACAGTAAAAGTCGAACCTG+TGG + chr1_3:62945161-62945180 Msa0132000:intron 40.0%
AACGGTAAAAGAAGAACCTG+TGG + chr1_3:62945071-62945090 Msa0132000:intron 40.0%
TGTAGTTGAGCCTACAGAAA+CGG + chr1_3:62945008-62945027 Msa0132000:CDS 40.0%
! TCGTCTTTTACCGTTTCTGT+AGG - chr1_3:62945246-62945265 None:intergenic 40.0%
GGATCAACTTCAGTAACTAC+AGG - chr1_3:62945270-62945289 None:intergenic 40.0%
AACAGTAAAAGTCGAACCTG+TGG + chr1_3:62945161-62945180 Msa0132000:intron 40.0%
AACGGTAAAAGAAGAACCTG+TGG + chr1_3:62945071-62945090 Msa0132000:intron 40.0%
GAGCCTACAGAAACAGTAAA+AGG + chr1_3:62945510-62945529 Msa0132000:intron 40.0%
AACAGTAAAAGGTGAACCTG+TGG + chr1_3:62945521-62945540 Msa0132000:CDS 40.0%
TGTTCCGTTGAATGTTGTTC+TGG - chr1_3:62945576-62945595 None:intergenic 40.0%
TTGGTTTCTGTAGACTGTTC+TGG - chr1_3:62945633-62945652 None:intergenic 40.0%
TCTACTTTCTCTGTTTCAGC+TGG - chr1_3:62945741-62945760 None:intergenic 40.0%
GATGAAAACCAAAGTGAACC+AGG + chr1_3:62945780-62945799 Msa0132000:CDS 40.0%
AGAGGAAGAAGTGAAACCAA+AGG + chr1_3:62945821-62945840 Msa0132000:CDS 40.0%
AGAACAAACAGGTGATACAG+TGG + chr1_3:62945860-62945879 Msa0132000:CDS 40.0%
TTACAAGTAGGTGAGGAAGT+TGG + chr1_3:62946017-62946036 Msa0132000:CDS 40.0%
TACAAGTAGGTGAGGAAGTT+GGG + chr1_3:62946018-62946037 Msa0132000:CDS 40.0%
GGAAGTTGGGGAAACTATTA+AGG + chr1_3:62946031-62946050 Msa0132000:CDS 40.0%
TGGGGAAACTATTAAGGAAG+TGG + chr1_3:62946037-62946056 Msa0132000:CDS 40.0%
!!! ACTTTTTTCGGTTGCTTGCT+CGG - chr1_3:62946066-62946085 None:intergenic 40.0%
CAAGCAACCGAAAAAAGTGA+AGG + chr1_3:62946068-62946087 Msa0132000:CDS 40.0%
ATCTAATGGCACCATCAAAG+AGG + chr1_3:62946091-62946110 Msa0132000:CDS 40.0%
GCTGCACAAGTTTCACTAAA+TGG + chr1_3:62946143-62946162 Msa0132000:CDS 40.0%
GATGGCAAGAAAGAAGTTGT+TGG + chr1_3:62946236-62946255 Msa0132000:CDS 40.0%
! AAAAGTTGTTGTTGCTGCAG+AGG + chr1_3:62946289-62946308 Msa0132000:CDS 40.0%
AAGACAGCTACAATTGAAGC+AGG + chr1_3:62946407-62946426 Msa0132000:CDS 40.0%
AGACAGCTACAATTGAAGCA+GGG + chr1_3:62946408-62946427 Msa0132000:CDS 40.0%
GATTTCTTCCACCTTTGTCT+CGG - chr1_3:62946438-62946457 None:intergenic 40.0%
TGAACCTGTTAGAGAAACAC+TGG + chr1_3:62946472-62946491 Msa0132000:CDS 40.0%
AATTGAGGTTGAATCCACCA+AGG + chr1_3:62946580-62946599 Msa0132000:CDS 40.0%
TTGTTTGAATGCTTCTGAGC+TGG - chr1_3:62946659-62946678 None:intergenic 40.0%
GTCACTAGTGAAAGCAAAGA+AGG + chr1_3:62946700-62946719 Msa0132000:CDS 40.0%
AAAGCAAAGAAGGCTATCAC+TGG + chr1_3:62946710-62946729 Msa0132000:CDS 40.0%
TTAACCTTAATGTCCCCCTT+TGG - chr1_3:62946770-62946789 None:intergenic 40.0%
CACTGAAACTAAGGAGCTCA+TGG - chr1_3:62943197-62943216 None:intergenic 45.0%
ATCGGTAGTGCTTACTGAAG+AGG - chr1_3:62943325-62943344 None:intergenic 45.0%
TTCTGTCTTCGATGAAGGAG+TGG - chr1_3:62943492-62943511 None:intergenic 45.0%
GAAGACAGAAGATGAGGTGA+AGG + chr1_3:62943502-62943521 Msa0132000:intron 45.0%
GGAAAAGGACGAAGCTATTG+CGG + chr1_3:62943604-62943623 Msa0132000:CDS 45.0%
! GTCTCCTTCTTCATTGGCTA+GGG - chr1_3:62943642-62943661 None:intergenic 45.0%
! TGTCTCCTTCTTCATTGGCT+AGG - chr1_3:62943643-62943662 None:intergenic 45.0%
TTCTGTATTCGACGAAGGAG+TGG - chr1_3:62943702-62943721 None:intergenic 45.0%
ACTCCTTCGTCGAATACAGA+AGG + chr1_3:62943701-62943720 Msa0132000:CDS 45.0%
TCTCCTTCTGTATTCGACGA+AGG - chr1_3:62943707-62943726 None:intergenic 45.0%
! CAATAGCTTCGTCCTTTTCC+GGG - chr1_3:62943604-62943623 None:intergenic 45.0%
! GCAATAGCTTCGTCCTTTTC+CGG - chr1_3:62943605-62943624 None:intergenic 45.0%
GACAGAAGGTGATGAGGTTA+AGG + chr1_3:62943928-62943947 Msa0132000:CDS 45.0%
!!! GTTTTTTCTGCAGCAACAGC+AGG - chr1_3:62944094-62944113 None:intergenic 45.0%
CTTATCGCTGTGTCATGTAC+TGG - chr1_3:62944208-62944227 None:intergenic 45.0%
TGGATGGTGTCTCATCATGA+TGG - chr1_3:62944231-62944250 None:intergenic 45.0%
!! TTTTCAGTGGTGTCAGCTTC+TGG - chr1_3:62944343-62944362 None:intergenic 45.0%
! CTCGGGCTTTTCTTCCTTTT+CGG - chr1_3:62944458-62944477 None:intergenic 45.0%
AACAGTGAAAGAAGAACCCG+TGG + chr1_3:62944666-62944685 Msa0132000:CDS 45.0%
AGTCTCAACTTCGGTAACCA+CGG - chr1_3:62944686-62944705 None:intergenic 45.0%
AGTCTCAACTTCGGTAACCA+CGG - chr1_3:62944686-62944705 None:intergenic 45.0%
ACCCGTGGTTACTGAAATTG+AGG + chr1_3:62944771-62944790 Msa0132000:CDS 45.0%
GCCTCAATTTCAGTAACCAC+GGG - chr1_3:62944775-62944794 None:intergenic 45.0%
GGATCAACTTCAGTAACCAC+AGG - chr1_3:62944910-62944929 None:intergenic 45.0%
GGATCAACTTCAGTAACCAC+AGG - chr1_3:62944910-62944929 None:intergenic 45.0%
AACGGTAAAAGAAGAAGCCG+TGG + chr1_3:62945296-62945315 Msa0132000:intron 45.0%
AGCTTCAACTTCAGTAGCCA+CGG - chr1_3:62945316-62945335 None:intergenic 45.0%
GGATCAACTTCAGTAACCAC+AGG - chr1_3:62944910-62944929 None:intergenic 45.0%
AACGGTAAAAGAAGAAGCCG+TGG + chr1_3:62945296-62945315 Msa0132000:intron 45.0%
AGCTTGAACTTCAGTAGCCA+CGG - chr1_3:62945451-62945470 None:intergenic 45.0%
ACCTGTGGTTACTGAAGTTG+AGG + chr1_3:62944906-62944925 Msa0132000:CDS 45.0%
TCCTCAACTTCAGTAACCAC+AGG - chr1_3:62945540-62945559 None:intergenic 45.0%
TTCAACGGAACAAAGGGAAG+AGG + chr1_3:62945584-62945603 Msa0132000:CDS 45.0%
AGACTAAGAACGACGAAGCA+GGG + chr1_3:62945715-62945734 Msa0132000:CDS 45.0%
AACAGAGAAAGTAGAGCCTG+TGG + chr1_3:62945746-62945765 Msa0132000:CDS 45.0%
TCATCCACTTCAGTAACCAC+AGG - chr1_3:62945765-62945784 None:intergenic 45.0%
ACAAACAGGTGATACAGTGG+AGG + chr1_3:62945863-62945882 Msa0132000:CDS 45.0%
TGCTTCTGACTCAGAGTTGT+TGG - chr1_3:62945931-62945950 None:intergenic 45.0%
TGATCCTCTGTCTAATGGAG+TGG + chr1_3:62945974-62945993 Msa0132000:CDS 45.0%
ACAAGTAGGTGAGGAAGTTG+GGG + chr1_3:62946019-62946038 Msa0132000:CDS 45.0%
!!! CTTTTTTCGGTTGCTTGCTC+GGG - chr1_3:62946065-62946084 None:intergenic 45.0%
TAATGGCACCATCAAAGAGG+AGG + chr1_3:62946094-62946113 Msa0132000:CDS 45.0%
GCAGCATTAACCGTTGTGTT+AGG - chr1_3:62946128-62946147 None:intergenic 45.0%
TGCTGCAGAGGATGAAAAGA+AGG + chr1_3:62946301-62946320 Msa0132000:CDS 45.0%
GGTTGACATCAAGAAGACTG+AGG + chr1_3:62946370-62946389 Msa0132000:CDS 45.0%
GAAGACTGAGGAACAGAATG+AGG + chr1_3:62946382-62946401 Msa0132000:CDS 45.0%
GACAGCTACAATTGAAGCAG+GGG + chr1_3:62946409-62946428 Msa0132000:CDS 45.0%
GATGCCAGTGTTTCTCTAAC+AGG - chr1_3:62946479-62946498 None:intergenic 45.0%
TGAGGAGCCAGTGAAAATTG+AGG + chr1_3:62946565-62946584 Msa0132000:CDS 45.0%
! TGGCTGGAGTTTCTTTTGGA+AGG - chr1_3:62946634-62946653 None:intergenic 45.0%
CAGATGGAGGAATCTGTGCA+AGG - chr1_3:62942838-62942857 None:intergenic 50.0%
AGGAGCTCATGGCCAAACTA+TGG - chr1_3:62943186-62943205 None:intergenic 50.0%
GGAAAAGGACGAAGCCATTG+CGG + chr1_3:62943394-62943413 Msa0132000:CDS 50.0%
GCTTGACCTTGTGCATTGTC+CGG - chr1_3:62943470-62943489 None:intergenic 50.0%
TTGCAGCAGGAGAGATCGAA+AGG + chr1_3:62943744-62943763 Msa0132000:intron 50.0%
GACAAGCCTGACAATGCACA+AGG + chr1_3:62943884-62943903 Msa0132000:CDS 50.0%
AACCTCATCACCTTCTGTCG+TGG - chr1_3:62943927-62943946 None:intergenic 50.0%
!! GGTTATTTTCGGCTCTGCTG+AGG - chr1_3:62944494-62944513 None:intergenic 50.0%
ATCTTCAGTCGAGGCCAATG+AGG + chr1_3:62944585-62944604 Msa0132000:CDS 50.0%
GTCTCAACTTCGGTAACCAC+GGG - chr1_3:62944685-62944704 None:intergenic 50.0%
GTCTCAACTTCGGTAACCAC+GGG - chr1_3:62944685-62944704 None:intergenic 50.0%
GTAGCCGCATGTTCTTCTCT+TGG - chr1_3:62944808-62944827 None:intergenic 50.0%
ACATGCGGCTACTGAAGTTG+AGG + chr1_3:62944816-62944835 Msa0132000:CDS 50.0%
GGCTACTGAAGTTGAGGCTA+CGG + chr1_3:62944822-62944841 Msa0132000:CDS 50.0%
ACCTGCAGCTACTGAAGTTG+AGG + chr1_3:62944861-62944880 Msa0132000:CDS 50.0%
ACCTCAACTTCAGTAGCTGC+AGG - chr1_3:62944865-62944884 None:intergenic 50.0%
GGCTCAACTACAGTAACTGC+AGG - chr1_3:62945000-62945019 None:intergenic 50.0%
GAGACTAAGAACGACGAAGC+AGG + chr1_3:62945714-62945733 Msa0132000:CDS 50.0%
AGAGCCTGTGGTTACTGAAG+TGG + chr1_3:62945758-62945777 Msa0132000:CDS 50.0%
GGTTCACCCTCCAAAAGACT+TGG + chr1_3:62945884-62945903 Msa0132000:CDS 50.0%
TCCTCTGTCTAATGGAGTGG+AGG + chr1_3:62945977-62945996 Msa0132000:CDS 50.0%
TCCTCCACTCCATTAGACAG+AGG - chr1_3:62945981-62946000 None:intergenic 50.0%
CTCGCTTTCCTCCTCTTTGA+TGG - chr1_3:62946105-62946124 None:intergenic 50.0%
GGAAAGCGAGCCTAACACAA+CGG + chr1_3:62946115-62946134 Msa0132000:CDS 50.0%
TCAGACAACCCCTGCAAATC+CGG + chr1_3:62946172-62946191 Msa0132000:CDS 50.0%
AAGGTTCCACCGGATTTGCA+GGG - chr1_3:62946184-62946203 None:intergenic 50.0%
ACTTCAGGAGAAGGTTCCAC+CGG - chr1_3:62946194-62946213 None:intergenic 50.0%
GGAGAACACTACCAATGTCG+AGG + chr1_3:62946265-62946284 Msa0132000:CDS 50.0%
TGGACAGCATCAGATGCTTC+TGG - chr1_3:62946329-62946348 None:intergenic 50.0%
TGTCCAAGTATCCTCGAGAG+AGG + chr1_3:62946343-62946362 Msa0132000:CDS 50.0%
! GGCTTGGCTGGAGTTTCTTT+TGG - chr1_3:62946638-62946657 None:intergenic 50.0%
TGAATGCTTCTGAGCTGGCT+TGG - chr1_3:62946654-62946673 None:intergenic 50.0%
!! GAGGACAGGTTTTTGGAGGA+TGG - chr1_3:62946743-62946762 None:intergenic 50.0%
!! CTCTGAGGACAGGTTTTTGG+AGG - chr1_3:62946747-62946766 None:intergenic 50.0%
!!! TGGCTCTGAGGACAGGTTTT+TGG - chr1_3:62946750-62946769 None:intergenic 50.0%
AAACCTGTCCTCAGAGCCAA+AGG + chr1_3:62946751-62946770 Msa0132000:CDS 50.0%
AACCTGTCCTCAGAGCCAAA+GGG + chr1_3:62946752-62946771 Msa0132000:CDS 50.0%
AGAGCCAAAGGGGGACATTA+AGG + chr1_3:62946763-62946782 Msa0132000:CDS 50.0%
GACAAGCCGGACAATGCACA+AGG + chr1_3:62943461-62943480 Msa0132000:CDS 55.0%
GCCTGACAATGCACAAGGTC+AGG + chr1_3:62943889-62943908 Msa0132000:CDS 55.0%
GCCTGACCTTGTGCATTGTC+AGG - chr1_3:62943893-62943912 None:intergenic 55.0%
ACTCCTTCGTCCACGACAGA+AGG + chr1_3:62943914-62943933 Msa0132000:CDS 55.0%
TCACCTTCTGTCGTGGACGA+AGG - chr1_3:62943920-62943939 None:intergenic 55.0%
GTCCACGACAGAAGGTGATG+AGG + chr1_3:62943922-62943941 Msa0132000:CDS 55.0%
GGCTCAACTTCAGTTGCCAC+TGG - chr1_3:62944955-62944974 None:intergenic 55.0%
GCTTCAACTTCAGCAGCCAC+AGG - chr1_3:62945045-62945064 None:intergenic 55.0%
GCTTCAACTTCAGCAGCCAC+AGG - chr1_3:62945045-62945064 None:intergenic 55.0%
GGCTCAACTACAGTTGCCAC+AGG - chr1_3:62945225-62945244 None:intergenic 55.0%
GGCTCAACTTCAGTAGCCAC+AGG - chr1_3:62945495-62945514 None:intergenic 55.0%
AGGTTCCACCGGATTTGCAG+GGG - chr1_3:62946183-62946202 None:intergenic 55.0%
GAAGGTTCCACCGGATTTGC+AGG - chr1_3:62946185-62946204 None:intergenic 55.0%
TCGCCTCTCTCGAGGATACT+TGG - chr1_3:62946349-62946368 None:intergenic 55.0%
AGTATCCTCGAGAGAGGCGA+AGG + chr1_3:62946349-62946368 Msa0132000:CDS 55.0%
ACCTGTCCTCAGAGCCAAAG+GGG + chr1_3:62946753-62946772 Msa0132000:CDS 55.0%
!! AATGTCCCCCTTTGGCTCTG+AGG - chr1_3:62946762-62946781 None:intergenic 55.0%
GTGAAGGCTGAGCTTGCAGC+AGG + chr1_3:62943518-62943537 Msa0132000:intron 60.0%
AAAGCCCGAGCTTGAGCCTC+TGG + chr1_3:62944468-62944487 Msa0132000:CDS 60.0%
TGAGGCCAGAGGCTCAAGCT+CGG - chr1_3:62944476-62944495 None:intergenic 60.0%
GACAACCCCTGCAAATCCGG+TGG + chr1_3:62946175-62946194 Msa0132000:CDS 60.0%
GTCAACCTTCGCCTCTCTCG+AGG - chr1_3:62946357-62946376 None:intergenic 60.0%
AGCAGGGGAGACCGAGACAA+AGG + chr1_3:62946424-62946443 Msa0132000:CDS 60.0%
AGGGGAGACCGAGACAAAGG+TGG + chr1_3:62946427-62946446 Msa0132000:CDS 60.0%
!! TGCTTCTGAGCTGGCTTGGC+TGG - chr1_3:62946650-62946669 None:intergenic 60.0%
CCTGTCCTCAGAGCCAAAGG+GGG + chr1_3:62946754-62946773 Msa0132000:CDS 60.0%
GAGGCCAGAGGCTCAAGCTC+GGG - chr1_3:62944475-62944494 None:intergenic 65.0%
TTCGGCTCTGCTGAGGCCAG+AGG - chr1_3:62944487-62944506 None:intergenic 65.0%
!! CCCCCTTTGGCTCTGAGGAC+AGG - chr1_3:62946757-62946776 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62942649 62946793 62942649 ID=Msa0132000;Name=Msa0132000
chr1_3 mRNA 62942649 62946793 62942649 ID=Msa0132000-mRNA-1;Parent=Msa0132000;Name=Msa0132000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|0|0|5|0|954
chr1_3 exon 62942649 62942657 62942649 ID=Msa0132000-mRNA-1:exon:21083;Parent=Msa0132000-mRNA-1
chr1_3 exon 62943380 62943517 62943380 ID=Msa0132000-mRNA-1:exon:21084;Parent=Msa0132000-mRNA-1
chr1_3 exon 62943578 62943730 62943578 ID=Msa0132000-mRNA-1:exon:21085;Parent=Msa0132000-mRNA-1
chr1_3 exon 62943791 62945074 62943791 ID=Msa0132000-mRNA-1:exon:21086;Parent=Msa0132000-mRNA-1
chr1_3 exon 62945513 62946793 62945513 ID=Msa0132000-mRNA-1:exon:21087;Parent=Msa0132000-mRNA-1
chr1_3 CDS 62942649 62942657 62942649 ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1
chr1_3 CDS 62943380 62943517 62943380 ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1
chr1_3 CDS 62943578 62943730 62943578 ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1
chr1_3 CDS 62943791 62945074 62943791 ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1
chr1_3 CDS 62945513 62946793 62945513 ID=Msa0132000-mRNA-1:cds;Parent=Msa0132000-mRNA-1
Gene Sequence

>Msa0132000

ATGCAACATCAATTTGTGAAGCAGGAAAAGGACGAAGCCATTGCGGAAAAGATTAATTCTCTAGCCAATGAAGACGGAGACAAACATGATGACAAGCCGGACAATGCACAAGGTCAAGCCACTCCTTCATCGAAGACAGAAGATGAGGTTTCAGTTGAAGATATTGTGAAGCAGGAAAAGGACGAAGCTATTGCGGAAAAGATGAATTCCCTAGCCAATGAAGAAGGAGACAAACATGATGACAAGCCGGACAATACACAAAGTCAAGCCACTCCTTCGTCGAATACAGAAGGAGATGAAGTTTCTATTGAAGATATTGTGAACCCGGAAAAGGACGAAGCTATTGCAGAAAAGATCAATTCCCTAGCCAATGAAGATGGAGATAAACATGATGACAAGCCTGACAATGCACAAGGTCAGGCTACTCCTTCGTCCACGACAGAAGGTGATGAGGTTAAGGCTGAGCTTGCAGCAGCAGAGATTGAAAAGTCTGATGATTCGTCAGCATTGAATGTTTCTGTTGAAGATAGTCCGAAACCTGACATAGTTGATGATGCACAAAATCCAGGTGTAGAAAAAGAAGATGAAGCGAAGGCTGAGCCTGCTGTTGCTGCAGAAAAAACTGATGATTCTGTACCATTAGAAACTGTTGCAGATAATCCGAAAGAGGAGAAAGATTTGATAACTGAATCAGAAACTATCAGTGTCACAGAACCAGTACATGACACAGCGATAAGCCATCATGATGAGACACCATCCACTGAATCTGATGTGAAGGAAACATCACAGCAGATAGAAAAGGAACTTGTAGAAACCAATGAAGAGAATCAACCCAAGATAGAAGATATTCCAGAAGCTGACACCACTGAAAAATCATCTGACACCACTGAAAAATCAAGTGATGCGACTGAGACTAATCAATTTGAAGAGGAGGTGAAACAAGCTGAAATTTCAGAAACAAGTGCCGAAAAGGAAGAAAAGCCCGAGCTTGAGCCTCTGGCCTCAGCAGAGCCGAAAATAACCAAAGAACCGGAAAAAGAATCACAAGAAATTTCACAAGAGGCAGAGCAACCAAATGCAATTGCAATTGTTGAATCTTCAGTCGAGGCCAATGAGGAAAAGACAACAGCAGCGATATCGGAAGAGACCAAAAACATCGAAGTAGAGCCTACCGAAACAGTGAAAGAAGAACCCGTGGTTACCGAAGTTGAGACTGCAGATAAAGTAAAAGAAGAACCCGTGGTTACCGAAGTTGAGACTGCAGATATAGTAAACAAAGAACCCGTGGTTACTGAAATTGAGGCTACAGAAACACCAAGAGAAGAACATGCGGCTACTGAAGTTGAGGCTACGGAAACAGTAAAAGAAGAACCTGCAGCTACTGAAGTTGAGGTTCCAGAAACAGTAAAAGACGAACCTGTGGTTACTGAAGTTGATCCTACAGAAACAGTAAAAGAAGAACCAGTGGCAACTGAAGTTGAGCCTACAGAAAAGGTAAAAGACGAACCTGCAGTTACTGTAGTTGAGCCTACAGAAACTGTAAAAGACGAACCTGTGGCTGCTGAAGTTGAAGCTACAGAAACGCCTACAGAAACAGTAAAAGGTGAACCTGTGGTTACTGAAGTTGAGGAAAACCGGAAAGAACCAGAACAACATTCAACGGAACAAAGGGAAGAGGAGCAACCAAACACATATTCAATTCCAGAACAGTCTACAGAAACCAATGATGTCATTGCTGTAGAAGAAAAATCAAGAGAATTAGAATTTGAGGCAGTGATGCTGAAAGAGACTAAGAACGACGAAGCAGGGCCAGCTGAAACAGAGAAAGTAGAGCCTGTGGTTACTGAAGTGGATGAAAACCAAAGTGAACCAGGAATTCAATCATTCAAACAAGAGGAAGAAGTGAAACCAAAGGAAGAAACTGAAAATCAAGAACAAACAGGTGATACAGTGGAGGTTCACCCTCCAAAAGACTTGGATATTGAGACGGTGAAAGAGACCAACAACTCTGAGTCAGAAGCAATTCTTGTAAAAGAAGAGAACATTGATCCTCTGTCTAATGGAGTGGAGGAAAAGCTAAGTGAACAATTACAAGTAGGTGAGGAAGTTGGGGAAACTATTAAGGAAGTGGAGCCCGAGCAAGCAACCGAAAAAAGTGAAGGATCTAATGGCACCATCAAAGAGGAGGAAAGCGAGCCTAACACAACGGTTAATGCTGCACAAGTTTCACTAAATGGGGAAGTTCAGACAACCCCTGCAAATCCGGTGGAACCTTCTCCTGAAGTTGAAGAAAAGATTGTTGTAAAAGATGGCAAGAAAGAAGTTGTTGGTGATACGGAGAACACTACCAATGTCGAGGAAAAAGTTGTTGTTGCTGCAGAGGATGAAAAGAAGGAACCAGAAGCATCTGATGCTGTCCAAGTATCCTCGAGAGAGGCGAAGGTTGACATCAAGAAGACTGAGGAACAGAATGAGGCAAAGACAGCTACAATTGAAGCAGGGGAGACCGAGACAAAGGTGGAAGAAATCTCTAAAGCTGTAAATGAACCTGTTAGAGAAACACTGGCATCTAAATTCGAAAAAGACGAGGAGGAAACTATTCAAAATGGAGCGGATAATTTGGAGAAAGAACGAATTGAGGAGCCAGTGAAAATTGAGGTTGAATCCACCAAGGAAAATGATACAACACCAATATCCAAGAACCTTCCAAAAGAAACTCCAGCCAAGCCAGCTCAGAAGCATTCAAACAACATTATAGCAAAGGTAAAACAGTCACTAGTGAAAGCAAAGAAGGCTATCACTGGAAAATCTCCATCCTCCAAAAACCTGTCCTCAGAGCCAAAGGGGGACATTAAGGTTAAATAA

Protein sequence

>Msa0132000

MQHQFVKQEKDEAIAEKINSLANEDGDKHDDKPDNAQGQATPSSKTEDEVSVEDIVKQEKDEAIAEKMNSLANEEGDKHDDKPDNTQSQATPSSNTEGDEVSIEDIVNPEKDEAIAEKINSLANEDGDKHDDKPDNAQGQATPSSTTEGDEVKAELAAAEIEKSDDSSALNVSVEDSPKPDIVDDAQNPGVEKEDEAKAEPAVAAEKTDDSVPLETVADNPKEEKDLITESETISVTEPVHDTAISHHDETPSTESDVKETSQQIEKELVETNEENQPKIEDIPEADTTEKSSDTTEKSSDATETNQFEEEVKQAEISETSAEKEEKPELEPLASAEPKITKEPEKESQEISQEAEQPNAIAIVESSVEANEEKTTAAISEETKNIEVEPTETVKEEPVVTEVETADKVKEEPVVTEVETADIVNKEPVVTEIEATETPREEHAATEVEATETVKEEPAATEVEVPETVKDEPVVTEVDPTETVKEEPVATEVEPTEKVKDEPAVTVVEPTETVKDEPVAAEVEATETPTETVKGEPVVTEVEENRKEPEQHSTEQREEEQPNTYSIPEQSTETNDVIAVEEKSRELEFEAVMLKETKNDEAGPAETEKVEPVVTEVDENQSEPGIQSFKQEEEVKPKEETENQEQTGDTVEVHPPKDLDIETVKETNNSESEAILVKEENIDPLSNGVEEKLSEQLQVGEEVGETIKEVEPEQATEKSEGSNGTIKEEESEPNTTVNAAQVSLNGEVQTTPANPVEPSPEVEEKIVVKDGKKEVVGDTENTTNVEEKVVVAAEDEKKEPEASDAVQVSSREAKVDIKKTEEQNEAKTATIEAGETETKVEEISKAVNEPVRETLASKFEKDEEETIQNGADNLEKERIEEPVKIEVESTKENDTTPISKNLPKETPAKPAQKHSNNIIAKVKQSLVKAKKAITGKSPSSKNLSSEPKGDIKVK*