Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787790 | sp|Q9SLN8|DBR_TOBAC | 62.323 | 353 | 123 | 2 | 1 | 353 | 1 | 343 | 1.39e-162 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787790 | A0A1S2Y2K2 | 88.604 | 351 | 30 | 2 | 4 | 353 | 3 | 344 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0787790 | 0.831678 | 1.456929e-55 | -8.615850e-47 |
| Msa0011050 | Msa0787790 | 0.834838 | 2.378265e-56 | -8.615850e-47 |
| Msa0042420 | Msa0787790 | 0.810049 | 1.398049e-50 | -8.615850e-47 |
| Msa0043850 | Msa0787790 | 0.817870 | 2.634627e-52 | -8.615850e-47 |
| Msa0048390 | Msa0787790 | 0.806966 | 6.361798e-50 | -8.615850e-47 |
| Msa0060070 | Msa0787790 | 0.804767 | 1.844306e-49 | -8.615850e-47 |
| Msa0061220 | Msa0787790 | 0.832412 | 9.595524e-56 | -8.615850e-47 |
| Msa0077370 | Msa0787790 | 0.803166 | 3.968490e-49 | -8.615850e-47 |
| Msa0090380 | Msa0787790 | 0.837658 | 4.563708e-57 | -8.615850e-47 |
| Msa0090510 | Msa0787790 | 0.814556 | 1.451100e-51 | -8.615850e-47 |
| Msa0094710 | Msa0787790 | 0.821822 | 3.290697e-53 | -8.615850e-47 |
| Msa0613150 | Msa0787790 | 0.859426 | 4.170085e-63 | -8.615850e-47 |
| Msa0641130 | Msa0787790 | 0.834147 | 3.546490e-56 | -8.615850e-47 |
| Msa0679670 | Msa0787790 | 0.832768 | 7.828456e-56 | -8.615850e-47 |
| Msa0696100 | Msa0787790 | 0.850155 | 2.039195e-60 | -8.615850e-47 |
| Msa0703810 | Msa0787790 | 0.814862 | 1.241262e-51 | -8.615850e-47 |
| Msa0713060 | Msa0787790 | 0.811456 | 6.937939e-51 | -8.615850e-47 |
| Msa0743870 | Msa0787790 | 0.871731 | 5.465117e-67 | -8.615850e-47 |
| Msa0744640 | Msa0787790 | 0.849833 | 2.509349e-60 | -8.615850e-47 |
| Msa0752960 | Msa0787790 | 0.823063 | 1.694433e-53 | -8.615850e-47 |
| Msa0775160 | Msa0787790 | 0.802864 | 4.582981e-49 | -8.615850e-47 |
| Msa0787790 | Msa0798450 | 0.801951 | 7.067282e-49 | -8.615850e-47 |
| Msa0787790 | Msa0812530 | 0.811828 | 5.759011e-51 | -8.615850e-47 |
| Msa0787790 | Msa0816630 | 0.804135 | 2.497964e-49 | -8.615850e-47 |
| Msa0787790 | Msa0824930 | 0.948222 | 1.446465e-106 | -8.615850e-47 |
| Msa0787790 | Msa0841730 | 0.848392 | 6.312825e-60 | -8.615850e-47 |
| Msa0787790 | Msa0852790 | 0.834039 | 3.774086e-56 | -8.615850e-47 |
| Msa0787790 | Msa0863990 | 0.934777 | 2.385199e-96 | -8.615850e-47 |
| Msa0787790 | Msa0870510 | 0.833226 | 6.023896e-56 | -8.615850e-47 |
| Msa0787790 | Msa0929290 | 0.815780 | 7.757276e-52 | -8.615850e-47 |
| Msa0787790 | Msa0945130 | 0.841267 | 5.269291e-58 | -8.615850e-47 |
| Msa0787790 | Msa1011250 | 0.822064 | 2.892467e-53 | -8.615850e-47 |
| Msa0787790 | Msa1016960 | 0.845881 | 3.079398e-59 | -8.615850e-47 |
| Msa0787790 | Msa1022030 | 0.805886 | 1.074936e-49 | -8.615850e-47 |
| Msa0787790 | Msa1031460 | 0.816911 | 4.331768e-52 | -8.615850e-47 |
| Msa0787790 | Msa1058200 | 0.846538 | 2.039770e-59 | -8.615850e-47 |
| Msa0787790 | Msa1062040 | 0.812509 | 4.089990e-51 | -8.615850e-47 |
| Msa0787790 | Msa1062080 | 0.806448 | 8.185466e-50 | -8.615850e-47 |
| Msa0787790 | Msa1069890 | 0.813943 | 1.981375e-51 | -8.615850e-47 |
| Msa0787790 | Msa1070540 | 0.835804 | 1.356029e-56 | -8.615850e-47 |
| Msa0787790 | Msa1089190 | 0.815142 | 1.075854e-51 | -8.615850e-47 |
| Msa0787790 | Msa1101240 | 0.834875 | 2.326616e-56 | -8.615850e-47 |
| Msa0787790 | Msa1107200 | 0.806893 | 6.594546e-50 | -8.615850e-47 |
| Msa0787790 | Msa1109810 | 0.815077 | 1.112242e-51 | -8.615850e-47 |
| Msa0787790 | Msa1131790 | 0.807814 | 4.205183e-50 | -8.615850e-47 |
| Msa0787790 | Msa1150780 | 0.821794 | 3.341233e-53 | -8.615850e-47 |
| Msa0787790 | Msa1157670 | 0.825918 | 3.606850e-54 | -8.615850e-47 |
| Msa0787790 | Msa1159170 | 0.809592 | 1.753330e-50 | -8.615850e-47 |
| Msa0787790 | Msa1208990 | 0.826167 | 3.146790e-54 | -8.615850e-47 |
| Msa0787790 | Msa1212050 | 0.810639 | 1.043149e-50 | -8.615850e-47 |
| Msa0787790 | Msa1212130 | 0.820768 | 5.760891e-53 | -8.615850e-47 |
| Msa0787790 | Msa1214170 | 0.805720 | 1.165032e-49 | -8.615850e-47 |
| Msa0787790 | Msa1218160 | 0.838197 | 3.318395e-57 | -8.615850e-47 |
| Msa0787790 | Msa1221220 | 0.821070 | 4.909172e-53 | -8.615850e-47 |
| Msa0787790 | Msa1221240 | 0.826012 | 3.426174e-54 | -8.615850e-47 |
| Msa0787790 | Msa1225580 | 0.853242 | 2.719004e-61 | -8.615850e-47 |
| Msa0787790 | Msa1246780 | 0.800373 | 1.486149e-48 | -8.615850e-47 |
| Msa0787790 | Msa1252810 | 0.818185 | 2.236134e-52 | -8.615850e-47 |
| Msa0787790 | Msa1256060 | 0.815703 | 8.072189e-52 | -8.615850e-47 |
| Msa0787790 | Msa1259860 | 0.819402 | 1.183466e-52 | -8.615850e-47 |
| Msa0787790 | Msa1260680 | 0.820633 | 6.186063e-53 | -8.615850e-47 |
| Msa0787790 | Msa1286210 | 0.809809 | 1.574754e-50 | -8.615850e-47 |
| Msa0787790 | Msa1296240 | 0.821370 | 4.186667e-53 | -8.615850e-47 |
| Msa0787790 | Msa1349500 | 0.803197 | 3.910557e-49 | -8.615850e-47 |
| Msa0787790 | Msa1350700 | 0.809784 | 1.594547e-50 | -8.615850e-47 |
| Msa0787790 | Msa1355510 | 0.860332 | 2.224075e-63 | -8.615850e-47 |
| Msa0787790 | Msa1364080 | 0.814865 | 1.239066e-51 | -8.615850e-47 |
| Msa0787790 | Msa1369320 | 0.809463 | 1.868799e-50 | -8.615850e-47 |
| Msa0787790 | Msa1379020 | 0.816843 | 4.486622e-52 | -8.615850e-47 |
| Msa0787790 | Msa1386890 | 0.815874 | 7.392927e-52 | -8.615850e-47 |
| Msa0787790 | Msa1397390 | 0.812198 | 4.782921e-51 | -8.615850e-47 |
| Msa0787790 | Msa1407760 | 0.825883 | 3.676341e-54 | -8.615850e-47 |
| Msa0787790 | Msa1407880 | 0.843065 | 1.762150e-58 | -8.615850e-47 |
| Msa0787790 | Msa1433410 | 0.839553 | 1.479574e-57 | -8.615850e-47 |
| Msa0787790 | Msa1443620 | 0.835585 | 1.540607e-56 | -8.615850e-47 |
| Msa0136630 | Msa0787790 | 0.807985 | 3.867121e-50 | -8.615850e-47 |
| Msa0137860 | Msa0787790 | 0.835608 | 1.519903e-56 | -8.615850e-47 |
| Msa0137980 | Msa0787790 | 0.811408 | 7.105100e-51 | -8.615850e-47 |
| Msa0138900 | Msa0787790 | 0.836588 | 8.571112e-57 | -8.615850e-47 |
| Msa0151220 | Msa0787790 | 0.837454 | 5.148336e-57 | -8.615850e-47 |
| Msa0176260 | Msa0787790 | 0.845899 | 3.045014e-59 | -8.615850e-47 |
| Msa0187310 | Msa0787790 | 0.807745 | 4.349753e-50 | -8.615850e-47 |
| Msa0224130 | Msa0787790 | 0.821958 | 3.061118e-53 | -8.615850e-47 |
| Msa0225850 | Msa0787790 | 0.808986 | 2.365313e-50 | -8.615850e-47 |
| Msa0380600 | Msa0787790 | 0.820343 | 7.210333e-53 | -8.615850e-47 |
| Msa0389900 | Msa0787790 | 0.862511 | 4.811597e-64 | -8.615850e-47 |
| Msa0430240 | Msa0787790 | 0.822623 | 2.145678e-53 | -8.615850e-47 |
| Msa0259440 | Msa0787790 | 0.823081 | 1.678470e-53 | -8.615850e-47 |
| Msa0259580 | Msa0787790 | 0.811267 | 7.624277e-51 | -8.615850e-47 |
| Msa0260520 | Msa0787790 | 0.806165 | 9.390525e-50 | -8.615850e-47 |
| Msa0264680 | Msa0787790 | 0.860047 | 2.711060e-63 | -8.615850e-47 |
| Msa0265270 | Msa0787790 | 0.816629 | 5.011704e-52 | -8.615850e-47 |
| Msa0276430 | Msa0787790 | 0.822446 | 2.359221e-53 | -8.615850e-47 |
| Msa0279430 | Msa0787790 | 0.812478 | 4.154243e-51 | -8.615850e-47 |
| Msa0287680 | Msa0787790 | 0.813398 | 2.612497e-51 | -8.615850e-47 |
| Msa0302730 | Msa0787790 | 0.856665 | 2.758886e-62 | -8.615850e-47 |
| Msa0305620 | Msa0787790 | 0.802815 | 4.689873e-49 | -8.615850e-47 |
| Msa0316470 | Msa0787790 | 0.808990 | 2.360842e-50 | -8.615850e-47 |
| Msa0484800 | Msa0787790 | 0.819673 | 1.026542e-52 | -8.615850e-47 |
| Msa0488580 | Msa0787790 | 0.808498 | 3.007570e-50 | -8.615850e-47 |
| Msa0500400 | Msa0787790 | 0.804144 | 2.487489e-49 | -8.615850e-47 |
| Msa0529000 | Msa0787790 | 0.802389 | 5.741435e-49 | -8.615850e-47 |
| Msa0545050 | Msa0787790 | 0.828734 | 7.625482e-55 | -8.615850e-47 |
| Msa0558390 | Msa0787790 | 0.846232 | 2.471505e-59 | -8.615850e-47 |
| Msa0567370 | Msa0787790 | 0.840632 | 7.734156e-58 | -8.615850e-47 |
| Msa0584580 | Msa0787790 | 0.834349 | 3.154775e-56 | -8.615850e-47 |
| Msa0584600 | Msa0787790 | 0.833892 | 4.108359e-56 | -8.615850e-47 |
| Msa0592330 | Msa0787790 | 0.805876 | 1.080140e-49 | -8.615850e-47 |
| Msa0600590 | Msa0787790 | 0.833965 | 3.938727e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787790 | MtrunA17_Chr8g0337361 | 62.000 | 350 | 124 | 1 | 4 | 353 | 62 | 402 | 5.34e-159 | 451 |
| Msa0787790 | MtrunA17_Chr8g0337471 | 60.969 | 351 | 127 | 2 | 4 | 353 | 3 | 344 | 1.61e-158 | 447 |
| Msa0787790 | MtrunA17_Chr8g0337491 | 59.722 | 360 | 124 | 3 | 4 | 351 | 3 | 353 | 1.27e-155 | 443 |
| Msa0787790 | MtrunA17_Chr8g0337451 | 59.943 | 352 | 129 | 3 | 4 | 353 | 3 | 344 | 4.50e-154 | 436 |
| Msa0787790 | MtrunA17_Chr4g0043061 | 58.924 | 353 | 133 | 3 | 3 | 353 | 8 | 350 | 3.06e-150 | 427 |
| Msa0787790 | MtrunA17_Chr8g0337371 | 60.286 | 350 | 129 | 2 | 4 | 353 | 498 | 837 | 4.22e-150 | 443 |
| Msa0787790 | MtrunA17_Chr8g0337371 | 58.430 | 344 | 133 | 2 | 4 | 347 | 51 | 384 | 3.28e-142 | 423 |
| Msa0787790 | MtrunA17_Chr7g0214831 | 59.887 | 354 | 126 | 4 | 4 | 353 | 5 | 346 | 3.50e-143 | 409 |
| Msa0787790 | MtrunA17_Chr8g0337481 | 65.724 | 283 | 88 | 1 | 71 | 353 | 12 | 285 | 1.03e-138 | 395 |
| Msa0787790 | MtrunA17_Chr2g0307121 | 43.099 | 355 | 187 | 4 | 4 | 353 | 2 | 346 | 1.67e-100 | 300 |
| Msa0787790 | MtrunA17_Chr8g0335881 | 61.333 | 225 | 78 | 1 | 4 | 228 | 3 | 218 | 1.76e-93 | 278 |
| Msa0787790 | MtrunA17_Chr5g0445921 | 90.625 | 128 | 12 | 0 | 224 | 351 | 9 | 136 | 2.35e-79 | 239 |
| Msa0787790 | MtrunA17_Chr2g0322531 | 39.607 | 356 | 200 | 6 | 1 | 350 | 1 | 347 | 1.12e-76 | 239 |
| Msa0787790 | MtrunA17_Chr2g0322551 | 40.653 | 337 | 180 | 8 | 1 | 328 | 1 | 326 | 4.14e-72 | 228 |
| Msa0787790 | MtrunA17_Chr2g0322541 | 39.365 | 315 | 174 | 6 | 23 | 329 | 22 | 327 | 1.54e-65 | 212 |
| Msa0787790 | MtrunA17_Chr5g0445911 | 98.077 | 52 | 1 | 0 | 25 | 76 | 1 | 52 | 3.15e-29 | 108 |
| Msa0787790 | MtrunA17_Chr4g0045041 | 35.321 | 218 | 124 | 5 | 139 | 350 | 416 | 622 | 2.25e-27 | 113 |
| Msa0787790 | MtrunA17_Chr4g0045061 | 34.862 | 218 | 125 | 5 | 139 | 350 | 416 | 622 | 1.13e-26 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787790 | AT1G26320.1 | 62.890 | 353 | 117 | 4 | 5 | 353 | 9 | 351 | 1.51e-156 | 443 |
| Msa0787790 | AT1G26320.2 | 62.040 | 353 | 115 | 4 | 5 | 353 | 9 | 346 | 8.47e-154 | 436 |
| Msa0787790 | AT3G03080.1 | 60.511 | 352 | 126 | 3 | 5 | 353 | 9 | 350 | 5.10e-152 | 432 |
| Msa0787790 | AT5G16990.1 | 59.773 | 353 | 125 | 5 | 6 | 353 | 3 | 343 | 6.53e-152 | 431 |
| Msa0787790 | AT5G17000.1 | 59.887 | 354 | 124 | 5 | 6 | 353 | 4 | 345 | 1.12e-151 | 431 |
| Msa0787790 | AT5G16970.1 | 59.605 | 354 | 125 | 5 | 6 | 353 | 4 | 345 | 2.87e-151 | 430 |
| Msa0787790 | AT5G37940.1 | 58.427 | 356 | 129 | 5 | 5 | 353 | 10 | 353 | 1.04e-147 | 421 |
| Msa0787790 | AT5G37980.1 | 58.074 | 353 | 133 | 4 | 6 | 353 | 11 | 353 | 8.45e-147 | 419 |
| Msa0787790 | AT5G16960.2 | 58.453 | 349 | 131 | 4 | 7 | 351 | 6 | 344 | 9.88e-145 | 413 |
| Msa0787790 | AT5G16960.1 | 58.453 | 349 | 131 | 4 | 7 | 351 | 6 | 344 | 9.88e-145 | 413 |
| Msa0787790 | AT5G38000.1 | 56.657 | 353 | 134 | 5 | 6 | 351 | 11 | 351 | 4.21e-142 | 407 |
| Msa0787790 | AT5G38000.3 | 55.398 | 352 | 137 | 6 | 5 | 349 | 10 | 348 | 9.50e-137 | 393 |
| Msa0787790 | AT3G59845.1 | 53.652 | 356 | 150 | 5 | 1 | 351 | 1 | 346 | 1.65e-129 | 374 |
| Msa0787790 | AT1G65560.1 | 55.679 | 361 | 141 | 7 | 1 | 353 | 1 | 350 | 2.04e-128 | 372 |
| Msa0787790 | AT5G38000.2 | 52.975 | 353 | 128 | 6 | 6 | 351 | 11 | 332 | 1.44e-126 | 367 |
| Msa0787790 | AT5G16980.2 | 49.143 | 350 | 127 | 5 | 6 | 353 | 5 | 305 | 4.42e-111 | 326 |
| Msa0787790 | AT1G65560.2 | 58.363 | 281 | 102 | 4 | 78 | 353 | 4 | 274 | 1.60e-108 | 318 |
| Msa0787790 | AT5G16980.1 | 63.598 | 239 | 78 | 1 | 115 | 353 | 10 | 239 | 1.83e-107 | 314 |
| Msa0787790 | AT5G16980.3 | 63.598 | 239 | 78 | 1 | 115 | 353 | 10 | 239 | 1.83e-107 | 314 |
| Msa0787790 | AT3G59845.2 | 58.268 | 254 | 95 | 3 | 99 | 351 | 1 | 244 | 4.19e-102 | 301 |
| Msa0787790 | AT5G17000.2 | 58.874 | 231 | 77 | 5 | 5 | 229 | 3 | 221 | 2.77e-90 | 271 |
| Msa0787790 | AT1G49670.1 | 33.486 | 218 | 128 | 6 | 139 | 350 | 412 | 618 | 2.57e-23 | 101 |
| Msa0787790 | AT1G49670.2 | 33.491 | 212 | 124 | 6 | 145 | 350 | 441 | 641 | 5.21e-22 | 97.8 |
| Msa0787790 | AT5G37960.1 | 46.988 | 83 | 43 | 1 | 272 | 353 | 25 | 107 | 2.54e-15 | 71.6 |
Find 69 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACATAATCTCCTTTCTT+AGG | 0.186749 | 5_2:-73872491 | None:intergenic |
| TCTCAGCCAATTGTTGGATA+TGG | 0.212277 | 5_2:+73872171 | Msa0787790:intron |
| TTGTTCCTCCTTGTAATTAA+AGG | 0.220154 | 5_2:-73872749 | None:intergenic |
| GTCTTTATCTCTTCAGCATT+TGG | 0.257772 | 5_2:+73872509 | Msa0787790:CDS |
| AAATACATGTCTGTTTGTTT+TGG | 0.259959 | 5_2:-73871315 | None:intergenic |
| GATATATTGAAGAGCAAGTT+TGG | 0.261813 | 5_2:+73872715 | Msa0787790:CDS |
| GTACCTCTTTCCTATTATAC+TGG | 0.275241 | 5_2:+73872324 | Msa0787790:CDS |
| ACATCTTCTGAAGCATCTTT+AGG | 0.288970 | 5_2:-73871366 | None:intergenic |
| ACACAATATTGCCGTATGTT+AGG | 0.301864 | 5_2:+73873393 | Msa0787790:CDS |
| ACCAAGTAATCCAGTATAAT+AGG | 0.317896 | 5_2:-73872334 | None:intergenic |
| AGATGCTTCAGAAGATGTTT+TGG | 0.327529 | 5_2:+73871371 | Msa0787790:CDS |
| TTTAGGAAGTTGTAAACTAA+TGG | 0.368693 | 5_2:-73871349 | None:intergenic |
| CTAGCTTTAGACTACATAAC+TGG | 0.371537 | 5_2:+73871288 | Msa0787790:CDS |
| CATTGTGTACTTACTGAATC+TGG | 0.374679 | 5_2:-73871477 | None:intergenic |
| AAGTATATGTCTATTCCTTC+AGG | 0.376687 | 5_2:-73873167 | None:intergenic |
| TCCTATTATACTGGATTACT+TGG | 0.387026 | 5_2:+73872333 | Msa0787790:CDS |
| TGTTTCTCTCAGCCAATTGT+TGG | 0.398931 | 5_2:+73872165 | Msa0787790:intron |
| CACAATATTGCCGTATGTTA+GGG | 0.402293 | 5_2:+73873394 | Msa0787790:CDS |
| AAGTGCTGGAAGTAAATATA+AGG | 0.404456 | 5_2:+73872589 | Msa0787790:CDS |
| CATACTCCATATCCAACAAT+TGG | 0.417973 | 5_2:-73872177 | None:intergenic |
| ACTTCTTCAATGTTGCATCT+AGG | 0.430401 | 5_2:-73872774 | None:intergenic |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.433984 | 5_2:+73872530 | Msa0787790:CDS |
| TCTTCAGCATTTGGTGCAGT+TGG | 0.434713 | 5_2:+73872518 | Msa0787790:CDS |
| GACATATACTTTGACAATGT+TGG | 0.436284 | 5_2:+73873179 | Msa0787790:CDS |
| AGACATAATCTCCTTTCTTA+GGG | 0.438933 | 5_2:-73872490 | None:intergenic |
| TGTTATGTTGTTGGAAGTGC+TGG | 0.440024 | 5_2:+73872575 | Msa0787790:CDS |
| ATATATTGAAGAGCAAGTTT+GGG | 0.445885 | 5_2:+73872716 | Msa0787790:CDS |
| GATGCTGTACTCTTCCCATT+TGG | 0.449214 | 5_2:-73872259 | None:intergenic |
| CGCGGTCGAATTGTGGTGGC+TGG | 0.464338 | 5_2:+73873242 | Msa0787790:CDS |
| TTTGATGAGGCTATCAGTCT+TGG | 0.465767 | 5_2:-73872286 | None:intergenic |
| TGGTCAACTAGCAAAATTGA+TGG | 0.468450 | 5_2:+73872550 | Msa0787790:CDS |
| TGGTTTGGGGAGTCACCAAA+TGG | 0.470534 | 5_2:+73872244 | Msa0787790:CDS |
| ATTATATATGTAGGTATGCC+TGG | 0.474482 | 5_2:+73872431 | Msa0787790:intron |
| TTGATGGGATGTTATGTTGT+TGG | 0.475372 | 5_2:+73872566 | Msa0787790:CDS |
| ACTTACTGAATCTGGAGAAA+AGG | 0.479229 | 5_2:-73871469 | None:intergenic |
| AGAACAAGTGAGCAACAAAC+AGG | 0.480774 | 5_2:+73871263 | Msa0787790:CDS |
| CCTGGTATGACTGCTTATGC+AGG | 0.485648 | 5_2:+73872449 | Msa0787790:CDS |
| CGCGGCGTCTCATGTTAAGA+AGG | 0.487677 | 5_2:-73873223 | None:intergenic |
| AACATTGCTTCTAATGCAGC+TGG | 0.496232 | 5_2:-73873467 | None:intergenic |
| ATGAGAGGAACCAAAAGAAC+CGG | 0.496526 | 5_2:+73871426 | Msa0787790:CDS |
| TGATGAGGCCTTTAATTACA+AGG | 0.501845 | 5_2:+73872741 | Msa0787790:CDS |
| GAAGTTGGTGTCCCTAAGAA+AGG | 0.513037 | 5_2:+73872479 | Msa0787790:CDS |
| TATGCAGGTTTCTATGAAGT+TGG | 0.517868 | 5_2:+73872464 | Msa0787790:CDS |
| TATGTTGAAGATATAGCTAA+AGG | 0.521594 | 5_2:+73873431 | Msa0787790:CDS |
| ATCTTCCCTTCCCTAACATA+CGG | 0.525695 | 5_2:-73873404 | None:intergenic |
| ATGTTCACAGGCAAAAGTGC+TGG | 0.538532 | 5_2:+73873485 | Msa0787790:CDS |
| CCTGCATAAGCAGTCATACC+AGG | 0.538967 | 5_2:-73872449 | None:intergenic |
| AAGTTGTAAACTAATGGTAG+AGG | 0.558112 | 5_2:-73871343 | None:intergenic |
| TAGCTAAAGGCATCGAGAGT+GGG | 0.559907 | 5_2:+73873444 | Msa0787790:CDS |
| AATCCAGTATAATAGGAAAG+AGG | 0.565113 | 5_2:-73872327 | None:intergenic |
| GTTGATAGGTACTTTCCTGA+AGG | 0.565387 | 5_2:+73873152 | Msa0787790:intron |
| GAGACGCCGCGGTCGAATTG+TGG | 0.565480 | 5_2:+73873235 | Msa0787790:CDS |
| TCTTGTGATCCTTACATGAG+AGG | 0.570442 | 5_2:+73871411 | Msa0787790:CDS |
| ATATACTTTGACAATGTTGG+TGG | 0.576525 | 5_2:+73873182 | Msa0787790:CDS |
| ATATGGAGTATGCAAAGTGT+TGG | 0.578801 | 5_2:+73872188 | Msa0787790:CDS |
| GAGCAAGTTTGGGTTTGATG+AGG | 0.579277 | 5_2:+73872726 | Msa0787790:CDS |
| CTGGAGAAAAGGAATAAAAG+AGG | 0.580653 | 5_2:-73871458 | None:intergenic |
| GCATTAGAAGCAATGTTCAC+AGG | 0.584098 | 5_2:+73873473 | Msa0787790:CDS |
| GGTTTGGGGAGTCACCAAAT+GGG | 0.589430 | 5_2:+73872245 | Msa0787790:CDS |
| ATATTGCCGTATGTTAGGGA+AGG | 0.608231 | 5_2:+73873398 | Msa0787790:CDS |
| ATAGCTAAAGGCATCGAGAG+TGG | 0.621489 | 5_2:+73873443 | Msa0787790:CDS |
| TATTGCCGTATGTTAGGGAA+GGG | 0.629740 | 5_2:+73873399 | Msa0787790:CDS |
| GCGGCGTCTCATGTTAAGAA+GGG | 0.635176 | 5_2:-73873222 | None:intergenic |
| TATGAACTTGATGAACCTCA+AGG | 0.637072 | 5_2:+73873278 | Msa0787790:CDS |
| GGTCAACTAGCAAAATTGAT+GGG | 0.646505 | 5_2:+73872551 | Msa0787790:CDS |
| ACGCCGCGGTCGAATTGTGG+TGG | 0.652143 | 5_2:+73873238 | Msa0787790:CDS |
| TGAGGCCTTTAATTACAAGG+AGG | 0.704335 | 5_2:+73872744 | Msa0787790:CDS |
| CTTCTTAACATGAGACGCCG+CGG | 0.740483 | 5_2:+73873224 | Msa0787790:CDS |
| CAGCCACCACAATTCGACCG+CGG | 0.745630 | 5_2:-73873241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTTTTTGTAAAATA+TGG | - | chr5_2:73871710-73871729 | None:intergenic | 10.0% |
| !!! | TATTTTACAAAAAAAAAAAG+TGG | + | chr5_2:73871710-73871729 | Msa0787790:intron | 10.0% |
| !!! | CTTTTTTTTTTTGTAAAATA+TGG | - | chr5_2:73871710-73871729 | None:intergenic | 10.0% |
| !!! | TATTTTACAAAAAAAAAAAG+TGG | + | chr5_2:73871710-73871729 | Msa0787790:intron | 10.0% |
| !! | ATATGATTAAGTCTATTATA+AGG | + | chr5_2:73872092-73872111 | Msa0787790:intron | 15.0% |
| !! | TAATGAGTTATTATATATGT+AGG | + | chr5_2:73872422-73872441 | Msa0787790:intron | 15.0% |
| !! | ATTTATTTATCTAGTATGAA+GGG | + | chr5_2:73872646-73872665 | Msa0787790:intron | 15.0% |
| !! | ATATGATTAAGTCTATTATA+AGG | + | chr5_2:73872092-73872111 | Msa0787790:intron | 15.0% |
| !! | TAATGAGTTATTATATATGT+AGG | + | chr5_2:73872422-73872441 | Msa0787790:intron | 15.0% |
| !! | ATTTATTTATCTAGTATGAA+GGG | + | chr5_2:73872646-73872665 | Msa0787790:intron | 15.0% |
| !!! | CTTTAATTTAAAGGTATACT+TGG | - | chr5_2:73871641-73871660 | None:intergenic | 20.0% |
| !! | AGTATACCTTTAAATTAAAG+AGG | + | chr5_2:73871641-73871660 | Msa0787790:intron | 20.0% |
| !! | ACAAAAAAAAAAAGTGGTAT+TGG | + | chr5_2:73871716-73871735 | Msa0787790:intron | 20.0% |
| !!! | CTTTATCTCTCTTTTTTTTT+TGG | - | chr5_2:73871782-73871801 | None:intergenic | 20.0% |
| !! | AAACATCCAAATTTCAAAAA+AGG | + | chr5_2:73872216-73872235 | Msa0787790:CDS | 20.0% |
| !! | CATTTATTTATCTAGTATGA+AGG | + | chr5_2:73872645-73872664 | Msa0787790:intron | 20.0% |
| !!! | AAGTGAAATTTTTTACTAGT+CGG | - | chr5_2:73872876-73872895 | None:intergenic | 20.0% |
| !! | ACTAGTAAAAAATTTCACTT+AGG | + | chr5_2:73872876-73872895 | Msa0787790:intron | 20.0% |
| !! | TTTAGTATTCATTACAAAAG+AGG | - | chr5_2:73873101-73873120 | None:intergenic | 20.0% |
| !!! | TCATTTATATCCTAAGTTTT+TGG | + | chr5_2:73873370-73873389 | Msa0787790:CDS | 20.0% |
| !!! | CTTTAATTTAAAGGTATACT+TGG | - | chr5_2:73871641-73871660 | None:intergenic | 20.0% |
| !! | AGTATACCTTTAAATTAAAG+AGG | + | chr5_2:73871641-73871660 | Msa0787790:intron | 20.0% |
| !! | ACAAAAAAAAAAAGTGGTAT+TGG | + | chr5_2:73871716-73871735 | Msa0787790:intron | 20.0% |
| !!! | CTTTATCTCTCTTTTTTTTT+TGG | - | chr5_2:73871782-73871801 | None:intergenic | 20.0% |
| !! | AAACATCCAAATTTCAAAAA+AGG | + | chr5_2:73872216-73872235 | Msa0787790:CDS | 20.0% |
| !! | CATTTATTTATCTAGTATGA+AGG | + | chr5_2:73872645-73872664 | Msa0787790:intron | 20.0% |
| !!! | AAGTGAAATTTTTTACTAGT+CGG | - | chr5_2:73872876-73872895 | None:intergenic | 20.0% |
| !! | ACTAGTAAAAAATTTCACTT+AGG | + | chr5_2:73872876-73872895 | Msa0787790:intron | 20.0% |
| !! | TTTAGTATTCATTACAAAAG+AGG | - | chr5_2:73873101-73873120 | None:intergenic | 20.0% |
| !!! | TCATTTATATCCTAAGTTTT+TGG | + | chr5_2:73873370-73873389 | Msa0787790:CDS | 20.0% |
| !! | AAATACATGTCTGTTTGTTT+TGG | - | chr5_2:73871318-73871337 | None:intergenic | 25.0% |
| ! | TTTAGGAAGTTGTAAACTAA+TGG | - | chr5_2:73871352-73871371 | None:intergenic | 25.0% |
| !!! | ATAAAAGAGGTTATTTTTGC+CGG | - | chr5_2:73871448-73871467 | None:intergenic | 25.0% |
| !! | AACACTCCTCTTTAATTTAA+AGG | - | chr5_2:73871650-73871669 | None:intergenic | 25.0% |
| !! | TGTTATTTGAACAACCAATT+TGG | + | chr5_2:73871666-73871685 | Msa0787790:intron | 25.0% |
| ! | CAAATAAGTTGTTACCAAAT+TGG | - | chr5_2:73871683-73871702 | None:intergenic | 25.0% |
| ! | ATTCAAATCGGTTGTAAAAA+TGG | - | chr5_2:73871932-73871951 | None:intergenic | 25.0% |
| ! | TTGAGCGATAAAATTCAAAT+CGG | - | chr5_2:73871944-73871963 | None:intergenic | 25.0% |
| ! | TATGTGATTATATCTTCTAG+AGG | + | chr5_2:73872121-73872140 | Msa0787790:intron | 25.0% |
| !!! | AAGTCTCCTTTTTTGAAATT+TGG | - | chr5_2:73872225-73872244 | None:intergenic | 25.0% |
| ! | AAATTTCAAAAAAGGAGACT+TGG | + | chr5_2:73872224-73872243 | Msa0787790:CDS | 25.0% |
| ! | TGTGTTCATGTCAATAAATA+AGG | + | chr5_2:73872690-73872709 | Msa0787790:intron | 25.0% |
| ! | ATATATTGAAGAGCAAGTTT+GGG | + | chr5_2:73872716-73872735 | Msa0787790:CDS | 25.0% |
| ! | TAGAATACAATACTTGCTTT+AGG | + | chr5_2:73872945-73872964 | Msa0787790:intron | 25.0% |
| ! | TTACTTGTTCAATTGTTCAT+AGG | - | chr5_2:73873002-73873021 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTTTATGCCTTG+AGG | - | chr5_2:73873296-73873315 | None:intergenic | 25.0% |
| ! | AATATTGTGTCCAAAAACTT+AGG | - | chr5_2:73873383-73873402 | None:intergenic | 25.0% |
| ! | TATGTTGAAGATATAGCTAA+AGG | + | chr5_2:73873431-73873450 | Msa0787790:CDS | 25.0% |
| !! | AAATACATGTCTGTTTGTTT+TGG | - | chr5_2:73871318-73871337 | None:intergenic | 25.0% |
| ! | TTTAGGAAGTTGTAAACTAA+TGG | - | chr5_2:73871352-73871371 | None:intergenic | 25.0% |
| !!! | ATAAAAGAGGTTATTTTTGC+CGG | - | chr5_2:73871448-73871467 | None:intergenic | 25.0% |
| !! | AACACTCCTCTTTAATTTAA+AGG | - | chr5_2:73871650-73871669 | None:intergenic | 25.0% |
| !! | TGTTATTTGAACAACCAATT+TGG | + | chr5_2:73871666-73871685 | Msa0787790:intron | 25.0% |
| ! | CAAATAAGTTGTTACCAAAT+TGG | - | chr5_2:73871683-73871702 | None:intergenic | 25.0% |
| ! | ATTCAAATCGGTTGTAAAAA+TGG | - | chr5_2:73871932-73871951 | None:intergenic | 25.0% |
| ! | TTGAGCGATAAAATTCAAAT+CGG | - | chr5_2:73871944-73871963 | None:intergenic | 25.0% |
| ! | TATGTGATTATATCTTCTAG+AGG | + | chr5_2:73872121-73872140 | Msa0787790:intron | 25.0% |
| !!! | AAGTCTCCTTTTTTGAAATT+TGG | - | chr5_2:73872225-73872244 | None:intergenic | 25.0% |
| ! | AAATTTCAAAAAAGGAGACT+TGG | + | chr5_2:73872224-73872243 | Msa0787790:CDS | 25.0% |
| ! | TGTGTTCATGTCAATAAATA+AGG | + | chr5_2:73872690-73872709 | Msa0787790:intron | 25.0% |
| ! | ATATATTGAAGAGCAAGTTT+GGG | + | chr5_2:73872716-73872735 | Msa0787790:CDS | 25.0% |
| ! | TAGAATACAATACTTGCTTT+AGG | + | chr5_2:73872945-73872964 | Msa0787790:intron | 25.0% |
| ! | TTACTTGTTCAATTGTTCAT+AGG | - | chr5_2:73873002-73873021 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTTTATGCCTTG+AGG | - | chr5_2:73873296-73873315 | None:intergenic | 25.0% |
| ! | AATATTGTGTCCAAAAACTT+AGG | - | chr5_2:73873383-73873402 | None:intergenic | 25.0% |
| ! | TATGTTGAAGATATAGCTAA+AGG | + | chr5_2:73873431-73873450 | Msa0787790:CDS | 25.0% |
| AAGTTGTAAACTAATGGTAG+AGG | - | chr5_2:73871346-73871365 | None:intergenic | 30.0% | |
| TTTCGGATATGATAAAACCA+CGG | - | chr5_2:73871591-73871610 | None:intergenic | 30.0% | |
| ATCATATCCGAAATAAGTGT+TGG | + | chr5_2:73871598-73871617 | Msa0787790:intron | 30.0% | |
| TCATATCCGAAATAAGTGTT+GGG | + | chr5_2:73871599-73871618 | Msa0787790:intron | 30.0% | |
| !! | AAAAAAAAGTGGTATTGGCA+CGG | + | chr5_2:73871721-73871740 | Msa0787790:intron | 30.0% |
| ACTTTATCTCTCTATTGCTA+TGG | - | chr5_2:73871750-73871769 | None:intergenic | 30.0% | |
| TTGCAAAAGTTGTCACTAAA+TGG | + | chr5_2:73871827-73871846 | Msa0787790:intron | 30.0% | |
| ! | GATTTGAATTTTATCGCTCA+AGG | + | chr5_2:73871943-73871962 | Msa0787790:intron | 30.0% |
| ACGAATTATGTTGGAACTAA+GGG | + | chr5_2:73872051-73872070 | Msa0787790:intron | 30.0% | |
| AATCCAGTATAATAGGAAAG+AGG | - | chr5_2:73872330-73872349 | None:intergenic | 30.0% | |
| TCCTATTATACTGGATTACT+TGG | + | chr5_2:73872333-73872352 | Msa0787790:CDS | 30.0% | |
| ACCAAGTAATCCAGTATAAT+AGG | - | chr5_2:73872337-73872356 | None:intergenic | 30.0% | |
| ATTATATATGTAGGTATGCC+TGG | + | chr5_2:73872431-73872450 | Msa0787790:intron | 30.0% | |
| AGACATAATCTCCTTTCTTA+GGG | - | chr5_2:73872493-73872512 | None:intergenic | 30.0% | |
| AAGACATAATCTCCTTTCTT+AGG | - | chr5_2:73872494-73872513 | None:intergenic | 30.0% | |
| !! | AAGTGCTGGAAGTAAATATA+AGG | + | chr5_2:73872589-73872608 | Msa0787790:CDS | 30.0% |
| GATATATTGAAGAGCAAGTT+TGG | + | chr5_2:73872715-73872734 | Msa0787790:CDS | 30.0% | |
| TTGTTCCTCCTTGTAATTAA+AGG | - | chr5_2:73872752-73872771 | None:intergenic | 30.0% | |
| ACTTGTATACCACAATTATC+AGG | + | chr5_2:73872837-73872856 | Msa0787790:intron | 30.0% | |
| CTTGTATACCACAATTATCA+GGG | + | chr5_2:73872838-73872857 | Msa0787790:intron | 30.0% | |
| GTTCATAGGATAATTAACGT+CGG | - | chr5_2:73872988-73873007 | None:intergenic | 30.0% | |
| AAGTAATGATCAAGAACCTA+AGG | + | chr5_2:73873016-73873035 | Msa0787790:intron | 30.0% | |
| ! | TGAGAAAAATGGATTTCCTT+AGG | - | chr5_2:73873035-73873054 | None:intergenic | 30.0% |
| CTAATCTTAGCTGAGAAAAA+TGG | - | chr5_2:73873046-73873065 | None:intergenic | 30.0% | |
| GTATTCATTACAAAAGAGGT+TGG | - | chr5_2:73873097-73873116 | None:intergenic | 30.0% | |
| GTTCTGTTTCAATTGTTGAT+AGG | + | chr5_2:73873138-73873157 | Msa0787790:intron | 30.0% | |
| AAGTATATGTCTATTCCTTC+AGG | - | chr5_2:73873170-73873189 | None:intergenic | 30.0% | |
| GACATATACTTTGACAATGT+TGG | + | chr5_2:73873179-73873198 | Msa0787790:CDS | 30.0% | |
| ATATACTTTGACAATGTTGG+TGG | + | chr5_2:73873182-73873201 | Msa0787790:CDS | 30.0% | |
| AAGTTGTAAACTAATGGTAG+AGG | - | chr5_2:73871346-73871365 | None:intergenic | 30.0% | |
| TTTCGGATATGATAAAACCA+CGG | - | chr5_2:73871591-73871610 | None:intergenic | 30.0% | |
| ATCATATCCGAAATAAGTGT+TGG | + | chr5_2:73871598-73871617 | Msa0787790:intron | 30.0% | |
| TCATATCCGAAATAAGTGTT+GGG | + | chr5_2:73871599-73871618 | Msa0787790:intron | 30.0% | |
| !! | AAAAAAAAGTGGTATTGGCA+CGG | + | chr5_2:73871721-73871740 | Msa0787790:intron | 30.0% |
| ACTTTATCTCTCTATTGCTA+TGG | - | chr5_2:73871750-73871769 | None:intergenic | 30.0% | |
| TTGCAAAAGTTGTCACTAAA+TGG | + | chr5_2:73871827-73871846 | Msa0787790:intron | 30.0% | |
| ! | GATTTGAATTTTATCGCTCA+AGG | + | chr5_2:73871943-73871962 | Msa0787790:intron | 30.0% |
| ACGAATTATGTTGGAACTAA+GGG | + | chr5_2:73872051-73872070 | Msa0787790:intron | 30.0% | |
| AATCCAGTATAATAGGAAAG+AGG | - | chr5_2:73872330-73872349 | None:intergenic | 30.0% | |
| TCCTATTATACTGGATTACT+TGG | + | chr5_2:73872333-73872352 | Msa0787790:CDS | 30.0% | |
| ACCAAGTAATCCAGTATAAT+AGG | - | chr5_2:73872337-73872356 | None:intergenic | 30.0% | |
| ATTATATATGTAGGTATGCC+TGG | + | chr5_2:73872431-73872450 | Msa0787790:intron | 30.0% | |
| AGACATAATCTCCTTTCTTA+GGG | - | chr5_2:73872493-73872512 | None:intergenic | 30.0% | |
| AAGACATAATCTCCTTTCTT+AGG | - | chr5_2:73872494-73872513 | None:intergenic | 30.0% | |
| !! | AAGTGCTGGAAGTAAATATA+AGG | + | chr5_2:73872589-73872608 | Msa0787790:CDS | 30.0% |
| GATATATTGAAGAGCAAGTT+TGG | + | chr5_2:73872715-73872734 | Msa0787790:CDS | 30.0% | |
| TTGTTCCTCCTTGTAATTAA+AGG | - | chr5_2:73872752-73872771 | None:intergenic | 30.0% | |
| ACTTGTATACCACAATTATC+AGG | + | chr5_2:73872837-73872856 | Msa0787790:intron | 30.0% | |
| CTTGTATACCACAATTATCA+GGG | + | chr5_2:73872838-73872857 | Msa0787790:intron | 30.0% | |
| GTTCATAGGATAATTAACGT+CGG | - | chr5_2:73872988-73873007 | None:intergenic | 30.0% | |
| AAGTAATGATCAAGAACCTA+AGG | + | chr5_2:73873016-73873035 | Msa0787790:intron | 30.0% | |
| ! | TGAGAAAAATGGATTTCCTT+AGG | - | chr5_2:73873035-73873054 | None:intergenic | 30.0% |
| CTAATCTTAGCTGAGAAAAA+TGG | - | chr5_2:73873046-73873065 | None:intergenic | 30.0% | |
| GTATTCATTACAAAAGAGGT+TGG | - | chr5_2:73873097-73873116 | None:intergenic | 30.0% | |
| GTTCTGTTTCAATTGTTGAT+AGG | + | chr5_2:73873138-73873157 | Msa0787790:intron | 30.0% | |
| AAGTATATGTCTATTCCTTC+AGG | - | chr5_2:73873170-73873189 | None:intergenic | 30.0% | |
| GACATATACTTTGACAATGT+TGG | + | chr5_2:73873179-73873198 | Msa0787790:CDS | 30.0% | |
| ATATACTTTGACAATGTTGG+TGG | + | chr5_2:73873182-73873201 | Msa0787790:CDS | 30.0% | |
| !! | CTAGCTTTAGACTACATAAC+TGG | + | chr5_2:73871288-73871307 | Msa0787790:CDS | 35.0% |
| !! | ACATCTTCTGAAGCATCTTT+AGG | - | chr5_2:73871369-73871388 | None:intergenic | 35.0% |
| ! | AGATGCTTCAGAAGATGTTT+TGG | + | chr5_2:73871371-73871390 | Msa0787790:CDS | 35.0% |
| !!! | GTTATTTTTGCCGGTTCTTT+TGG | - | chr5_2:73871439-73871458 | None:intergenic | 35.0% |
| CTGGAGAAAAGGAATAAAAG+AGG | - | chr5_2:73871461-73871480 | None:intergenic | 35.0% | |
| ACTTACTGAATCTGGAGAAA+AGG | - | chr5_2:73871472-73871491 | None:intergenic | 35.0% | |
| CATTGTGTACTTACTGAATC+TGG | - | chr5_2:73871480-73871499 | None:intergenic | 35.0% | |
| TGATAAAACCACGGCTAATT+TGG | - | chr5_2:73871582-73871601 | None:intergenic | 35.0% | |
| GACGAATTATGTTGGAACTA+AGG | + | chr5_2:73872050-73872069 | Msa0787790:intron | 35.0% | |
| CATACTCCATATCCAACAAT+TGG | - | chr5_2:73872180-73872199 | None:intergenic | 35.0% | |
| ATATGGAGTATGCAAAGTGT+TGG | + | chr5_2:73872188-73872207 | Msa0787790:CDS | 35.0% | |
| ! | TCAAAAAAGGAGACTTGGTT+TGG | + | chr5_2:73872229-73872248 | Msa0787790:CDS | 35.0% |
| ! | CAAAAAAGGAGACTTGGTTT+GGG | + | chr5_2:73872230-73872249 | Msa0787790:CDS | 35.0% |
| ! | AAAAAAGGAGACTTGGTTTG+GGG | + | chr5_2:73872231-73872250 | Msa0787790:CDS | 35.0% |
| GTACCTCTTTCCTATTATAC+TGG | + | chr5_2:73872324-73872343 | Msa0787790:CDS | 35.0% | |
| TATGCAGGTTTCTATGAAGT+TGG | + | chr5_2:73872464-73872483 | Msa0787790:CDS | 35.0% | |
| GTCTTTATCTCTTCAGCATT+TGG | + | chr5_2:73872509-73872528 | Msa0787790:CDS | 35.0% | |
| TGGTCAACTAGCAAAATTGA+TGG | + | chr5_2:73872550-73872569 | Msa0787790:CDS | 35.0% | |
| GGTCAACTAGCAAAATTGAT+GGG | + | chr5_2:73872551-73872570 | Msa0787790:CDS | 35.0% | |
| TTGATGGGATGTTATGTTGT+TGG | + | chr5_2:73872566-73872585 | Msa0787790:CDS | 35.0% | |
| TGATGAGGCCTTTAATTACA+AGG | + | chr5_2:73872741-73872760 | Msa0787790:CDS | 35.0% | |
| ACTTCTTCAATGTTGCATCT+AGG | - | chr5_2:73872777-73872796 | None:intergenic | 35.0% | |
| TATGAACTTGATGAACCTCA+AGG | + | chr5_2:73873278-73873297 | Msa0787790:CDS | 35.0% | |
| ACACAATATTGCCGTATGTT+AGG | + | chr5_2:73873393-73873412 | Msa0787790:CDS | 35.0% | |
| CACAATATTGCCGTATGTTA+GGG | + | chr5_2:73873394-73873413 | Msa0787790:CDS | 35.0% | |
| !! | CTAGCTTTAGACTACATAAC+TGG | + | chr5_2:73871288-73871307 | Msa0787790:CDS | 35.0% |
| !! | ACATCTTCTGAAGCATCTTT+AGG | - | chr5_2:73871369-73871388 | None:intergenic | 35.0% |
| ! | AGATGCTTCAGAAGATGTTT+TGG | + | chr5_2:73871371-73871390 | Msa0787790:CDS | 35.0% |
| !!! | GTTATTTTTGCCGGTTCTTT+TGG | - | chr5_2:73871439-73871458 | None:intergenic | 35.0% |
| CTGGAGAAAAGGAATAAAAG+AGG | - | chr5_2:73871461-73871480 | None:intergenic | 35.0% | |
| ACTTACTGAATCTGGAGAAA+AGG | - | chr5_2:73871472-73871491 | None:intergenic | 35.0% | |
| CATTGTGTACTTACTGAATC+TGG | - | chr5_2:73871480-73871499 | None:intergenic | 35.0% | |
| TGATAAAACCACGGCTAATT+TGG | - | chr5_2:73871582-73871601 | None:intergenic | 35.0% | |
| GACGAATTATGTTGGAACTA+AGG | + | chr5_2:73872050-73872069 | Msa0787790:intron | 35.0% | |
| CATACTCCATATCCAACAAT+TGG | - | chr5_2:73872180-73872199 | None:intergenic | 35.0% | |
| ATATGGAGTATGCAAAGTGT+TGG | + | chr5_2:73872188-73872207 | Msa0787790:CDS | 35.0% | |
| ! | TCAAAAAAGGAGACTTGGTT+TGG | + | chr5_2:73872229-73872248 | Msa0787790:CDS | 35.0% |
| ! | CAAAAAAGGAGACTTGGTTT+GGG | + | chr5_2:73872230-73872249 | Msa0787790:CDS | 35.0% |
| ! | AAAAAAGGAGACTTGGTTTG+GGG | + | chr5_2:73872231-73872250 | Msa0787790:CDS | 35.0% |
| GTACCTCTTTCCTATTATAC+TGG | + | chr5_2:73872324-73872343 | Msa0787790:CDS | 35.0% | |
| TATGCAGGTTTCTATGAAGT+TGG | + | chr5_2:73872464-73872483 | Msa0787790:CDS | 35.0% | |
| GTCTTTATCTCTTCAGCATT+TGG | + | chr5_2:73872509-73872528 | Msa0787790:CDS | 35.0% | |
| TGGTCAACTAGCAAAATTGA+TGG | + | chr5_2:73872550-73872569 | Msa0787790:CDS | 35.0% | |
| GGTCAACTAGCAAAATTGAT+GGG | + | chr5_2:73872551-73872570 | Msa0787790:CDS | 35.0% | |
| TTGATGGGATGTTATGTTGT+TGG | + | chr5_2:73872566-73872585 | Msa0787790:CDS | 35.0% | |
| TGATGAGGCCTTTAATTACA+AGG | + | chr5_2:73872741-73872760 | Msa0787790:CDS | 35.0% | |
| ACTTCTTCAATGTTGCATCT+AGG | - | chr5_2:73872777-73872796 | None:intergenic | 35.0% | |
| TATGAACTTGATGAACCTCA+AGG | + | chr5_2:73873278-73873297 | Msa0787790:CDS | 35.0% | |
| ACACAATATTGCCGTATGTT+AGG | + | chr5_2:73873393-73873412 | Msa0787790:CDS | 35.0% | |
| CACAATATTGCCGTATGTTA+GGG | + | chr5_2:73873394-73873413 | Msa0787790:CDS | 35.0% | |
| AGAACAAGTGAGCAACAAAC+AGG | + | chr5_2:73871263-73871282 | Msa0787790:CDS | 40.0% | |
| TCTTGTGATCCTTACATGAG+AGG | + | chr5_2:73871411-73871430 | Msa0787790:CDS | 40.0% | |
| !!! | CTTTTGGTTCCTCTCATGTA+AGG | - | chr5_2:73871423-73871442 | None:intergenic | 40.0% |
| ATGAGAGGAACCAAAAGAAC+CGG | + | chr5_2:73871426-73871445 | Msa0787790:CDS | 40.0% | |
| AAACCACGGCTAATTTGGAA+CGG | - | chr5_2:73871577-73871596 | None:intergenic | 40.0% | |
| GAACGTCCCAACACTTATTT+CGG | - | chr5_2:73871608-73871627 | None:intergenic | 40.0% | |
| AGTTAAACTGTAACACCTCG+TGG | + | chr5_2:73871972-73871991 | Msa0787790:intron | 40.0% | |
| TTAAGAATGTTGTGTCCACG+AGG | - | chr5_2:73871990-73872009 | None:intergenic | 40.0% | |
| TTCATCTGTGCGAAAAGCTT+AGG | + | chr5_2:73872025-73872044 | Msa0787790:intron | 40.0% | |
| CTTAGGACGACGAATTATGT+TGG | + | chr5_2:73872042-73872061 | Msa0787790:intron | 40.0% | |
| TGTTTCTCTCAGCCAATTGT+TGG | + | chr5_2:73872165-73872184 | Msa0787790:intron | 40.0% | |
| TCTCAGCCAATTGTTGGATA+TGG | + | chr5_2:73872171-73872190 | Msa0787790:intron | 40.0% | |
| TTTGATGAGGCTATCAGTCT+TGG | - | chr5_2:73872289-73872308 | None:intergenic | 40.0% | |
| !! | CAGCATGCTCAATTTTGATG+AGG | - | chr5_2:73872302-73872321 | None:intergenic | 40.0% |
| ! | TGTTATGTTGTTGGAAGTGC+TGG | + | chr5_2:73872575-73872594 | Msa0787790:CDS | 40.0% |
| TGAGGCCTTTAATTACAAGG+AGG | + | chr5_2:73872744-73872763 | Msa0787790:CDS | 40.0% | |
| !!! | TTTTTTACTAGTCGGTCCCT+TGG | - | chr5_2:73872868-73872887 | None:intergenic | 40.0% |
| !!! | TTTAGGCCTCACTTTTTGCT+GGG | + | chr5_2:73872962-73872981 | Msa0787790:intron | 40.0% |
| ! | GTTGATAGGTACTTTCCTGA+AGG | + | chr5_2:73873152-73873171 | Msa0787790:intron | 40.0% |
| ATATTGCCGTATGTTAGGGA+AGG | + | chr5_2:73873398-73873417 | Msa0787790:CDS | 40.0% | |
| TATTGCCGTATGTTAGGGAA+GGG | + | chr5_2:73873399-73873418 | Msa0787790:CDS | 40.0% | |
| ATCTTCCCTTCCCTAACATA+CGG | - | chr5_2:73873407-73873426 | None:intergenic | 40.0% | |
| AACATTGCTTCTAATGCAGC+TGG | - | chr5_2:73873470-73873489 | None:intergenic | 40.0% | |
| GCATTAGAAGCAATGTTCAC+AGG | + | chr5_2:73873473-73873492 | Msa0787790:CDS | 40.0% | |
| AGAACAAGTGAGCAACAAAC+AGG | + | chr5_2:73871263-73871282 | Msa0787790:CDS | 40.0% | |
| TCTTGTGATCCTTACATGAG+AGG | + | chr5_2:73871411-73871430 | Msa0787790:CDS | 40.0% | |
| !!! | CTTTTGGTTCCTCTCATGTA+AGG | - | chr5_2:73871423-73871442 | None:intergenic | 40.0% |
| ATGAGAGGAACCAAAAGAAC+CGG | + | chr5_2:73871426-73871445 | Msa0787790:CDS | 40.0% | |
| AAACCACGGCTAATTTGGAA+CGG | - | chr5_2:73871577-73871596 | None:intergenic | 40.0% | |
| GAACGTCCCAACACTTATTT+CGG | - | chr5_2:73871608-73871627 | None:intergenic | 40.0% | |
| AGTTAAACTGTAACACCTCG+TGG | + | chr5_2:73871972-73871991 | Msa0787790:intron | 40.0% | |
| TTAAGAATGTTGTGTCCACG+AGG | - | chr5_2:73871990-73872009 | None:intergenic | 40.0% | |
| TTCATCTGTGCGAAAAGCTT+AGG | + | chr5_2:73872025-73872044 | Msa0787790:intron | 40.0% | |
| CTTAGGACGACGAATTATGT+TGG | + | chr5_2:73872042-73872061 | Msa0787790:intron | 40.0% | |
| TGTTTCTCTCAGCCAATTGT+TGG | + | chr5_2:73872165-73872184 | Msa0787790:intron | 40.0% | |
| TCTCAGCCAATTGTTGGATA+TGG | + | chr5_2:73872171-73872190 | Msa0787790:intron | 40.0% | |
| TTTGATGAGGCTATCAGTCT+TGG | - | chr5_2:73872289-73872308 | None:intergenic | 40.0% | |
| !! | CAGCATGCTCAATTTTGATG+AGG | - | chr5_2:73872302-73872321 | None:intergenic | 40.0% |
| ! | TGTTATGTTGTTGGAAGTGC+TGG | + | chr5_2:73872575-73872594 | Msa0787790:CDS | 40.0% |
| TGAGGCCTTTAATTACAAGG+AGG | + | chr5_2:73872744-73872763 | Msa0787790:CDS | 40.0% | |
| !!! | TTTTTTACTAGTCGGTCCCT+TGG | - | chr5_2:73872868-73872887 | None:intergenic | 40.0% |
| !!! | TTTAGGCCTCACTTTTTGCT+GGG | + | chr5_2:73872962-73872981 | Msa0787790:intron | 40.0% |
| ! | GTTGATAGGTACTTTCCTGA+AGG | + | chr5_2:73873152-73873171 | Msa0787790:intron | 40.0% |
| ATATTGCCGTATGTTAGGGA+AGG | + | chr5_2:73873398-73873417 | Msa0787790:CDS | 40.0% | |
| TATTGCCGTATGTTAGGGAA+GGG | + | chr5_2:73873399-73873418 | Msa0787790:CDS | 40.0% | |
| ATCTTCCCTTCCCTAACATA+CGG | - | chr5_2:73873407-73873426 | None:intergenic | 40.0% | |
| AACATTGCTTCTAATGCAGC+TGG | - | chr5_2:73873470-73873489 | None:intergenic | 40.0% | |
| GCATTAGAAGCAATGTTCAC+AGG | + | chr5_2:73873473-73873492 | Msa0787790:CDS | 40.0% | |
| ! | ACGGCTAATTTGGAACGGAT+GGG | - | chr5_2:73871572-73871591 | None:intergenic | 45.0% |
| GATGCTGTACTCTTCCCATT+TGG | - | chr5_2:73872262-73872281 | None:intergenic | 45.0% | |
| !! | GAAGTTGGTGTCCCTAAGAA+AGG | + | chr5_2:73872479-73872498 | Msa0787790:CDS | 45.0% |
| !! | TCTTCAGCATTTGGTGCAGT+TGG | + | chr5_2:73872518-73872537 | Msa0787790:CDS | 45.0% |
| ! | GAGCAAGTTTGGGTTTGATG+AGG | + | chr5_2:73872726-73872745 | Msa0787790:CDS | 45.0% |
| TTGGATCGCCCTGATAATTG+TGG | - | chr5_2:73872849-73872868 | None:intergenic | 45.0% | |
| ACAATTATCAGGGCGATCCA+AGG | + | chr5_2:73872848-73872867 | Msa0787790:intron | 45.0% | |
| CAATTATCAGGGCGATCCAA+GGG | + | chr5_2:73872849-73872868 | Msa0787790:intron | 45.0% | |
| !!! | CTTTAGGCCTCACTTTTTGC+TGG | + | chr5_2:73872961-73872980 | Msa0787790:intron | 45.0% |
| !! | ATAGCTAAAGGCATCGAGAG+TGG | + | chr5_2:73873443-73873462 | Msa0787790:CDS | 45.0% |
| !! | TAGCTAAAGGCATCGAGAGT+GGG | + | chr5_2:73873444-73873463 | Msa0787790:CDS | 45.0% |
| ! | ATGTTCACAGGCAAAAGTGC+TGG | + | chr5_2:73873485-73873504 | Msa0787790:CDS | 45.0% |
| ! | ACGGCTAATTTGGAACGGAT+GGG | - | chr5_2:73871572-73871591 | None:intergenic | 45.0% |
| GATGCTGTACTCTTCCCATT+TGG | - | chr5_2:73872262-73872281 | None:intergenic | 45.0% | |
| !! | GAAGTTGGTGTCCCTAAGAA+AGG | + | chr5_2:73872479-73872498 | Msa0787790:CDS | 45.0% |
| !! | TCTTCAGCATTTGGTGCAGT+TGG | + | chr5_2:73872518-73872537 | Msa0787790:CDS | 45.0% |
| ! | GAGCAAGTTTGGGTTTGATG+AGG | + | chr5_2:73872726-73872745 | Msa0787790:CDS | 45.0% |
| TTGGATCGCCCTGATAATTG+TGG | - | chr5_2:73872849-73872868 | None:intergenic | 45.0% | |
| ACAATTATCAGGGCGATCCA+AGG | + | chr5_2:73872848-73872867 | Msa0787790:intron | 45.0% | |
| CAATTATCAGGGCGATCCAA+GGG | + | chr5_2:73872849-73872868 | Msa0787790:intron | 45.0% | |
| !!! | CTTTAGGCCTCACTTTTTGC+TGG | + | chr5_2:73872961-73872980 | Msa0787790:intron | 45.0% |
| !! | ATAGCTAAAGGCATCGAGAG+TGG | + | chr5_2:73873443-73873462 | Msa0787790:CDS | 45.0% |
| !! | TAGCTAAAGGCATCGAGAGT+GGG | + | chr5_2:73873444-73873463 | Msa0787790:CDS | 45.0% |
| ! | ATGTTCACAGGCAAAAGTGC+TGG | + | chr5_2:73873485-73873504 | Msa0787790:CDS | 45.0% |
| ! | CGGCTAATTTGGAACGGATG+GGG | - | chr5_2:73871571-73871590 | None:intergenic | 50.0% |
| ! | CACGGCTAATTTGGAACGGA+TGG | - | chr5_2:73871573-73871592 | None:intergenic | 50.0% |
| CATCCGTTCCAAATTAGCCG+TGG | + | chr5_2:73871571-73871590 | Msa0787790:intron | 50.0% | |
| ! | TGGTTTGGGGAGTCACCAAA+TGG | + | chr5_2:73872244-73872263 | Msa0787790:CDS | 50.0% |
| GGTTTGGGGAGTCACCAAAT+GGG | + | chr5_2:73872245-73872264 | Msa0787790:CDS | 50.0% | |
| CCTGCATAAGCAGTCATACC+AGG | - | chr5_2:73872452-73872471 | None:intergenic | 50.0% | |
| CCTGGTATGACTGCTTATGC+AGG | + | chr5_2:73872449-73872468 | Msa0787790:CDS | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr5_2:73872530-73872549 | Msa0787790:CDS | 50.0% | |
| GCGGCGTCTCATGTTAAGAA+GGG | - | chr5_2:73873225-73873244 | None:intergenic | 50.0% | |
| CTTCTTAACATGAGACGCCG+CGG | + | chr5_2:73873224-73873243 | Msa0787790:CDS | 50.0% | |
| ! | CGGCTAATTTGGAACGGATG+GGG | - | chr5_2:73871571-73871590 | None:intergenic | 50.0% |
| ! | CACGGCTAATTTGGAACGGA+TGG | - | chr5_2:73871573-73871592 | None:intergenic | 50.0% |
| CATCCGTTCCAAATTAGCCG+TGG | + | chr5_2:73871571-73871590 | Msa0787790:intron | 50.0% | |
| ! | TGGTTTGGGGAGTCACCAAA+TGG | + | chr5_2:73872244-73872263 | Msa0787790:CDS | 50.0% |
| GGTTTGGGGAGTCACCAAAT+GGG | + | chr5_2:73872245-73872264 | Msa0787790:CDS | 50.0% | |
| CCTGCATAAGCAGTCATACC+AGG | - | chr5_2:73872452-73872471 | None:intergenic | 50.0% | |
| CCTGGTATGACTGCTTATGC+AGG | + | chr5_2:73872449-73872468 | Msa0787790:CDS | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr5_2:73872530-73872549 | Msa0787790:CDS | 50.0% | |
| GCGGCGTCTCATGTTAAGAA+GGG | - | chr5_2:73873225-73873244 | None:intergenic | 50.0% | |
| CTTCTTAACATGAGACGCCG+CGG | + | chr5_2:73873224-73873243 | Msa0787790:CDS | 50.0% | |
| CGCGGCGTCTCATGTTAAGA+AGG | - | chr5_2:73873226-73873245 | None:intergenic | 55.0% | |
| CGCGGCGTCTCATGTTAAGA+AGG | - | chr5_2:73873226-73873245 | None:intergenic | 55.0% | |
| CGTCGGCCCAGCAAAAAGTG+AGG | - | chr5_2:73872971-73872990 | None:intergenic | 60.0% | |
| CAGCCACCACAATTCGACCG+CGG | - | chr5_2:73873244-73873263 | None:intergenic | 60.0% | |
| CGTCGGCCCAGCAAAAAGTG+AGG | - | chr5_2:73872971-73872990 | None:intergenic | 60.0% | |
| CAGCCACCACAATTCGACCG+CGG | - | chr5_2:73873244-73873263 | None:intergenic | 60.0% | |
| GAGACGCCGCGGTCGAATTG+TGG | + | chr5_2:73873235-73873254 | Msa0787790:CDS | 65.0% | |
| ACGCCGCGGTCGAATTGTGG+TGG | + | chr5_2:73873238-73873257 | Msa0787790:CDS | 65.0% | |
| CGCGGTCGAATTGTGGTGGC+TGG | + | chr5_2:73873242-73873261 | Msa0787790:CDS | 65.0% | |
| GAGACGCCGCGGTCGAATTG+TGG | + | chr5_2:73873235-73873254 | Msa0787790:CDS | 65.0% | |
| ACGCCGCGGTCGAATTGTGG+TGG | + | chr5_2:73873238-73873257 | Msa0787790:CDS | 65.0% | |
| CGCGGTCGAATTGTGGTGGC+TGG | + | chr5_2:73873242-73873261 | Msa0787790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 73871258 | 73873538 | 73871258 | ID=Msa0787790;Name=Msa0787790 |
| chr5_2 | mRNA | 73871258 | 73873538 | 73871258 | ID=Msa0787790-mRNA-1;Parent=Msa0787790;Name=Msa0787790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|353 |
| chr5_2 | exon | 73871258 | 73871485 | 73871258 | ID=Msa0787790-mRNA-1:exon:22495;Parent=Msa0787790-mRNA-1 |
| chr5_2 | exon | 73872177 | 73872354 | 73872177 | ID=Msa0787790-mRNA-1:exon:22496;Parent=Msa0787790-mRNA-1 |
| chr5_2 | exon | 73872444 | 73872637 | 73872444 | ID=Msa0787790-mRNA-1:exon:22497;Parent=Msa0787790-mRNA-1 |
| chr5_2 | exon | 73872712 | 73872794 | 73872712 | ID=Msa0787790-mRNA-1:exon:22498;Parent=Msa0787790-mRNA-1 |
| chr5_2 | exon | 73873160 | 73873538 | 73873160 | ID=Msa0787790-mRNA-1:exon:22499;Parent=Msa0787790-mRNA-1 |
| chr5_2 | CDS | 73871258 | 73871485 | 73871258 | ID=Msa0787790-mRNA-1:cds;Parent=Msa0787790-mRNA-1 |
| chr5_2 | CDS | 73872177 | 73872354 | 73872177 | ID=Msa0787790-mRNA-1:cds;Parent=Msa0787790-mRNA-1 |
| chr5_2 | CDS | 73872444 | 73872637 | 73872444 | ID=Msa0787790-mRNA-1:cds;Parent=Msa0787790-mRNA-1 |
| chr5_2 | CDS | 73872712 | 73872794 | 73872712 | ID=Msa0787790-mRNA-1:cds;Parent=Msa0787790-mRNA-1 |
| chr5_2 | CDS | 73873160 | 73873538 | 73873160 | ID=Msa0787790-mRNA-1:cds;Parent=Msa0787790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
