Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047650 | sp|Q93ZJ3|NFD6_ARATH | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 6.02e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047650 | Msa0194940 | 0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa0047650 | Msa0340560 | 0.819088 | 1.395335e-52 | -8.615850e-47 |
| Msa0047650 | Msa0432750 | 0.808701 | 2.721294e-50 | -8.615850e-47 |
| Msa0047650 | Msa0479980 | 0.809386 | 1.941193e-50 | -8.615850e-47 |
| Msa0047650 | Msa0544720 | 0.913017 | 1.001339e-83 | -8.615850e-47 |
| Msa0047650 | Msa0608260 | 0.913728 | 4.391559e-84 | -8.615850e-47 |
| Msa0047650 | Msa0691330 | 0.912565 | 1.684372e-83 | -8.615850e-47 |
| Msa0047650 | Msa0930490 | 0.833603 | 4.850392e-56 | -8.615850e-47 |
| Msa0047650 | Msa1083370 | 0.802261 | 6.099912e-49 | -8.615850e-47 |
| Msa0047650 | Msa1106870 | 0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0047650 | Msa1116940 | 0.821643 | 3.620633e-53 | -8.615850e-47 |
| Msa0047650 | Msa1124850 | 0.808219 | 3.449122e-50 | -8.615850e-47 |
| Msa0047650 | Msa1167540 | 0.823094 | 1.666394e-53 | -8.615850e-47 |
| Msa0047650 | Msa1371410 | 0.812428 | 4.261285e-51 | -8.615850e-47 |
| Msa0047650 | Msa1415620 | 0.808620 | 2.831367e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047650 | MtrunA17_Chr4g0040461 | 95.556 | 90 | 4 | 0 | 1 | 90 | 1 | 90 | 1.61e-55 | 169 |
| Msa0047650 | MtrunA17_Chr2g0324851 | 71.910 | 89 | 23 | 1 | 1 | 89 | 4 | 90 | 2.71e-27 | 97.8 |
| Msa0047650 | MtrunA17_Chr2g0282671 | 47.674 | 86 | 42 | 2 | 4 | 89 | 3 | 85 | 3.74e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047650 | AT2G20585.2 | 58.667 | 75 | 27 | 2 | 21 | 93 | 28 | 100 | 4.24e-20 | 80.1 |
| Msa0047650 | AT2G20585.5 | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 6.12e-20 | 79.7 |
| Msa0047650 | AT2G20585.1 | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 6.12e-20 | 79.7 |
| Msa0047650 | AT2G20585.4 | 58.571 | 70 | 27 | 1 | 21 | 90 | 28 | 95 | 1.58e-19 | 78.2 |
| Msa0047650 | AT2G20585.3 | 58.571 | 70 | 27 | 1 | 21 | 90 | 28 | 95 | 1.58e-19 | 78.2 |
| Msa0047650 | AT2G20585.6 | 58.571 | 70 | 27 | 1 | 21 | 90 | 28 | 95 | 2.25e-19 | 78.2 |
| Msa0047650 | AT2G20585.7 | 58.571 | 70 | 27 | 1 | 21 | 90 | 28 | 95 | 2.25e-19 | 78.2 |
| Msa0047650 | AT2G33847.1 | 54.762 | 84 | 31 | 3 | 4 | 83 | 2 | 82 | 9.82e-19 | 76.3 |
| Msa0047650 | AT2G33847.2 | 54.762 | 84 | 31 | 3 | 4 | 83 | 2 | 82 | 1.32e-18 | 75.9 |
| Msa0047650 | AT1G28395.2 | 51.579 | 95 | 36 | 4 | 4 | 92 | 2 | 92 | 2.04e-18 | 75.5 |
| Msa0047650 | AT1G28395.3 | 51.579 | 95 | 36 | 4 | 4 | 92 | 2 | 92 | 2.04e-18 | 75.5 |
| Msa0047650 | AT1G28395.1 | 51.579 | 95 | 36 | 4 | 4 | 92 | 2 | 92 | 2.04e-18 | 75.5 |
| Msa0047650 | AT1G28395.6 | 54.023 | 87 | 32 | 3 | 4 | 84 | 2 | 86 | 5.34e-18 | 74.3 |
| Msa0047650 | AT1G28395.4 | 54.023 | 87 | 32 | 3 | 4 | 84 | 2 | 86 | 5.34e-18 | 74.3 |
| Msa0047650 | AT1G28395.5 | 54.023 | 87 | 32 | 3 | 4 | 84 | 2 | 86 | 6.10e-18 | 74.3 |
Find 31 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCACCAGAAAATCTATT+TGG | 0.221185 | 1_1:+80729719 | Msa0047650:CDS |
| TGATGGCGAGAGAGGTTTAT+TGG | 0.267866 | 1_1:-80727082 | None:intergenic |
| CGCCATCAACATCCATGTTC+AGG | 0.345694 | 1_1:+80727097 | Msa0047650:CDS |
| ATTACGAAAGACATTCAGAT+TGG | 0.415461 | 1_1:+80729808 | Msa0047650:CDS |
| CAAAACTCCGACAACTGAAA+TGG | 0.417043 | 1_1:+80726954 | Msa0047650:exon |
| GGCGACACGGAAGGCTGATC+TGG | 0.428480 | 1_1:-80727019 | None:intergenic |
| ACCCACCAGAAAATCTATTT+GGG | 0.449145 | 1_1:+80729720 | Msa0047650:CDS |
| TTTCAAGCCGCAACTACGCT+TGG | 0.454615 | 1_1:+80727296 | Msa0047650:CDS |
| AAGCGTAGTTGCGGCTTGAA+AGG | 0.455777 | 1_1:-80727294 | None:intergenic |
| GTGGAAGCCATTTCAGTTGT+CGG | 0.465535 | 1_1:-80726961 | None:intergenic |
| GAACATTGATCTGGCGGCGG+TGG | 0.465977 | 1_1:-80726980 | None:intergenic |
| GAGGTTTATTGGATGCCATT+CGG | 0.480101 | 1_1:-80727071 | None:intergenic |
| ATCAGCCTTCCGTGTCGCCT+CGG | 0.502584 | 1_1:+80727023 | Msa0047650:CDS |
| AGATGATCGGAACATTGATC+TGG | 0.517704 | 1_1:-80726989 | None:intergenic |
| AGCGTAGTTGCGGCTTGAAA+GGG | 0.524369 | 1_1:-80727293 | None:intergenic |
| ATCTGGTTGCAGAAGATGAT+CGG | 0.541311 | 1_1:-80727002 | None:intergenic |
| ATGGATGTTGATGGCGAGAG+AGG | 0.553880 | 1_1:-80727090 | None:intergenic |
| AGCTTCCGAGGCGACACGGA+AGG | 0.572335 | 1_1:-80727028 | None:intergenic |
| GAAGCAGTAACAGTGTGGTA+AGG | 0.573128 | 1_1:-80727247 | None:intergenic |
| ATTCGGAACGGAGAACGAGC+TGG | 0.579838 | 1_1:-80727054 | None:intergenic |
| AGCTCGTTCTCCGTTCCGAA+TGG | 0.598424 | 1_1:+80727056 | Msa0047650:CDS |
| GTTTAGCTTCCGAGGCGACA+CGG | 0.598984 | 1_1:-80727032 | None:intergenic |
| ACGAGCTGGTTTAGCTTCCG+AGG | 0.599944 | 1_1:-80727040 | None:intergenic |
| CTGAAAGCCAAGCGTAGTTG+CGG | 0.602315 | 1_1:-80727303 | None:intergenic |
| TACCTGAACATGGATGTTGA+TGG | 0.605060 | 1_1:-80727099 | None:intergenic |
| TTATTGGATGCCATTCGGAA+CGG | 0.606198 | 1_1:-80727066 | None:intergenic |
| AACTACGCTTGGCTTTCAGA+AGG | 0.611860 | 1_1:+80727307 | Msa0047650:CDS |
| TCGGAACATTGATCTGGCGG+CGG | 0.641753 | 1_1:-80726983 | None:intergenic |
| TGATCGGAACATTGATCTGG+CGG | 0.646708 | 1_1:-80726986 | None:intergenic |
| TATCGATTAATACCTGAACA+TGG | 0.666866 | 1_1:-80727109 | None:intergenic |
| GCGCAGAAGCAGTAACAGTG+TGG | 0.726110 | 1_1:-80727252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTTTTTCTTGTTATT+CGG | + | chr1_1:80727857-80727876 | Msa0047650:intron | 15.0% |
| !! | TAATAAAAATTAGTAGAGTT+AGG | + | chr1_1:80727957-80727976 | Msa0047650:intron | 15.0% |
| !! | AATAAAAATTAGTAGAGTTA+GGG | + | chr1_1:80727958-80727977 | Msa0047650:intron | 15.0% |
| !!! | TCTTTCTACAATTAATTTTT+CGG | + | chr1_1:80728111-80728130 | Msa0047650:intron | 15.0% |
| !!! | TAGTTGTATTTGTTATTTTA+CGG | - | chr1_1:80728346-80728365 | None:intergenic | 15.0% |
| !! | CTAGTTATTTGATATTATTT+AGG | + | chr1_1:80728527-80728546 | Msa0047650:intron | 15.0% |
| !! | ATTAAAATATTCGAGATAAA+AGG | - | chr1_1:80729291-80729310 | None:intergenic | 15.0% |
| !! | ATTAATTTATACAATCGATT+TGG | + | chr1_1:80729483-80729502 | Msa0047650:intron | 15.0% |
| !! | TCTAAATAATTCTAATTTAG+TGG | + | chr1_1:80729618-80729637 | Msa0047650:intron | 15.0% |
| !!! | TTTTTGTGTGAAATGTAATT+AGG | + | chr1_1:80727185-80727204 | Msa0047650:intron | 20.0% |
| !!! | GTATTTTATCATGATTACAA+TGG | + | chr1_1:80727534-80727553 | Msa0047650:intron | 20.0% |
| !! | AATGTTAAGATTTATCAGAA+TGG | + | chr1_1:80727906-80727925 | Msa0047650:intron | 20.0% |
| !! | ATGTTAAGATTTATCAGAAT+GGG | + | chr1_1:80727907-80727926 | Msa0047650:intron | 20.0% |
| !!! | CTTTCTACAATTAATTTTTC+GGG | + | chr1_1:80728112-80728131 | Msa0047650:intron | 20.0% |
| !! | AACTGAGATTAAATAACATA+TGG | + | chr1_1:80728157-80728176 | Msa0047650:intron | 20.0% |
| !!! | TACAAACAAAAAAAAGTGTA+TGG | - | chr1_1:80728395-80728414 | None:intergenic | 20.0% |
| !!! | ATACACTTTTTTTTGTTTGT+AGG | + | chr1_1:80728394-80728413 | Msa0047650:intron | 20.0% |
| !!! | GATTCTTTCTTTCTTTTTTA+AGG | + | chr1_1:80728802-80728821 | Msa0047650:intron | 20.0% |
| !! | ATATTGAGCATAATCTTTAT+TGG | - | chr1_1:80729016-80729035 | None:intergenic | 20.0% |
| ! | GGTATTATCAATTCTACTAA+TGG | + | chr1_1:80727328-80727347 | Msa0047650:intron | 25.0% |
| ! | ATTTGATTACTCTTAGCATT+AGG | + | chr1_1:80727460-80727479 | Msa0047650:intron | 25.0% |
| !! | CACTTTGAAGGAAATTAAAT+TGG | + | chr1_1:80727485-80727504 | Msa0047650:intron | 25.0% |
| ! | CGTATATATGAGTTTATAAG+CGG | + | chr1_1:80727567-80727586 | Msa0047650:intron | 25.0% |
| ! | TGTTAAGATTTATCAGAATG+GGG | + | chr1_1:80727908-80727927 | Msa0047650:intron | 25.0% |
| ! | TGAAAAAAAACTTTGTAGTG+TGG | + | chr1_1:80727982-80728001 | Msa0047650:intron | 25.0% |
| ! | CTAAGTCAAAATTAAACCAA+TGG | - | chr1_1:80728060-80728079 | None:intergenic | 25.0% |
| !!! | CATTGGTTTAATTTTGACTT+AGG | + | chr1_1:80728058-80728077 | Msa0047650:intron | 25.0% |
| ! | GTCAAGCATAAAAAAATAAC+TGG | - | chr1_1:80728239-80728258 | None:intergenic | 25.0% |
| ! | TAAACTAATCCATCAATCTT+TGG | - | chr1_1:80728293-80728312 | None:intergenic | 25.0% |
| !!! | TGTATTTGTTATTTTACGGA+GGG | - | chr1_1:80728342-80728361 | None:intergenic | 25.0% |
| !!! | TTGTATTTGTTATTTTACGG+AGG | - | chr1_1:80728343-80728362 | None:intergenic | 25.0% |
| ! | CAATAAGATTCATAAAGAGA+AGG | - | chr1_1:80728643-80728662 | None:intergenic | 25.0% |
| ! | AATTATCATTTGTCTGCAAT+TGG | + | chr1_1:80728688-80728707 | Msa0047650:intron | 25.0% |
| !!! | TCTTTCTTTCTTTTTTAAGG+CGG | + | chr1_1:80728805-80728824 | Msa0047650:intron | 25.0% |
| !!! | TAGAGCACTTTTTATTAACA+TGG | + | chr1_1:80728875-80728894 | Msa0047650:intron | 25.0% |
| ! | GATTATGCTCAATATTTACA+TGG | + | chr1_1:80729021-80729040 | Msa0047650:intron | 25.0% |
| !! | ACAAGAAAAAAGTACAACTT+TGG | - | chr1_1:80729053-80729072 | None:intergenic | 25.0% |
| !! | ATTCAATGTTTTGCTTGTAT+AGG | + | chr1_1:80729140-80729159 | Msa0047650:intron | 25.0% |
| ! | ACGTAATAAAGAAAAACGAA+AGG | - | chr1_1:80729396-80729415 | None:intergenic | 25.0% |
| !!! | AATTTATACAATCGATTTGG+AGG | + | chr1_1:80729486-80729505 | Msa0047650:intron | 25.0% |
| ! | TATCGATTAATACCTGAACA+TGG | - | chr1_1:80727112-80727131 | None:intergenic | 30.0% |
| ACACAAAAACTCAATTCAAC+AGG | - | chr1_1:80727214-80727233 | None:intergenic | 30.0% | |
| CAATGTGTTTATCTGCAATT+TGG | + | chr1_1:80727363-80727382 | Msa0047650:intron | 30.0% | |
| ! | ATTACAACTCGTTGTTCTTT+TGG | + | chr1_1:80727437-80727456 | Msa0047650:intron | 30.0% |
| ATATATGAGTTTATAAGCGG+AGG | + | chr1_1:80727570-80727589 | Msa0047650:intron | 30.0% | |
| ! | TTGCAATGACTTAGGATTTT+GGG | - | chr1_1:80727799-80727818 | None:intergenic | 30.0% |
| ! | GATTTTACTTGCTTAACGTT+AGG | - | chr1_1:80727843-80727862 | None:intergenic | 30.0% |
| AAGATATCAAACAACATGAC+AGG | - | chr1_1:80727885-80727904 | None:intergenic | 30.0% | |
| AAAAACAGAGGTAAACTAGT+AGG | - | chr1_1:80728027-80728046 | None:intergenic | 30.0% | |
| !!! | GTTTTTTATTTCCTGACCAT+TGG | + | chr1_1:80728041-80728060 | Msa0047650:intron | 30.0% |
| TCAAAATTAAACCAATGGTC+AGG | - | chr1_1:80728055-80728074 | None:intergenic | 30.0% | |
| !!! | TATTTGTTATTTTACGGAGG+GGG | - | chr1_1:80728340-80728359 | None:intergenic | 30.0% |
| !!! | GTATTTGTTATTTTACGGAG+GGG | - | chr1_1:80728341-80728360 | None:intergenic | 30.0% |
| TAAAAAGCTCAACAAATCAC+AGG | - | chr1_1:80728468-80728487 | None:intergenic | 30.0% | |
| ! | CAAAAGATTTTGTTGCTACT+AGG | + | chr1_1:80728490-80728509 | Msa0047650:intron | 30.0% |
| ! | CATGGAAACTTGTTTATCTT+AGG | + | chr1_1:80728893-80728912 | Msa0047650:intron | 30.0% |
| CTGTTGTCTGTTTGTATATT+AGG | + | chr1_1:80728917-80728936 | Msa0047650:intron | 30.0% | |
| !! | ATTACTTTTCTACTTTCAGC+AGG | + | chr1_1:80728960-80728979 | Msa0047650:intron | 30.0% |
| TATGCTCAATATTTACATGG+TGG | + | chr1_1:80729024-80729043 | Msa0047650:intron | 30.0% | |
| GCTTGGACTATTAATAATGT+AGG | + | chr1_1:80729098-80729117 | Msa0047650:intron | 30.0% | |
| AAGGAAATTGCCCAATATAT+GGG | - | chr1_1:80729272-80729291 | None:intergenic | 30.0% | |
| AAAGGAAATTGCCCAATATA+TGG | - | chr1_1:80729273-80729292 | None:intergenic | 30.0% | |
| !! | AGATTTTGTTTGTATGGAGT+TGG | + | chr1_1:80729316-80729335 | Msa0047650:intron | 30.0% |
| ! | AGGTTGAATGTTCTTGTTTA+AGG | + | chr1_1:80729548-80729567 | Msa0047650:intron | 30.0% |
| ! | GGTTGAATGTTCTTGTTTAA+GGG | + | chr1_1:80729549-80729568 | Msa0047650:intron | 30.0% |
| TTAAACTTGTACTTCAGCTA+AGG | + | chr1_1:80729660-80729679 | Msa0047650:intron | 30.0% | |
| ATTACGAAAGACATTCAGAT+TGG | + | chr1_1:80729808-80729827 | Msa0047650:CDS | 30.0% | |
| !!! | AAGTGTAGGGTTTTTTGGTT+TGG | - | chr1_1:80726930-80726949 | None:intergenic | 35.0% |
| !!! | GAGATAAGTGTAGGGTTTTT+TGG | - | chr1_1:80726935-80726954 | None:intergenic | 35.0% |
| !!! | GGAGTTTTGAGATAAGTGTA+GGG | - | chr1_1:80726943-80726962 | None:intergenic | 35.0% |
| GATACACGCATTATCATGAA+CGG | + | chr1_1:80727128-80727147 | Msa0047650:intron | 35.0% | |
| ! | AAGAGTAAGTCTCGTGTTTT+GGG | - | chr1_1:80727680-80727699 | None:intergenic | 35.0% |
| CATTGGCACTCTTAATACTA+GGG | - | chr1_1:80727730-80727749 | None:intergenic | 35.0% | |
| ACATTGGCACTCTTAATACT+AGG | - | chr1_1:80727731-80727750 | None:intergenic | 35.0% | |
| GCTCTTCTTAGCAATAACAT+TGG | - | chr1_1:80727747-80727766 | None:intergenic | 35.0% | |
| ATGTTATTGCTAAGAAGAGC+TGG | + | chr1_1:80727747-80727766 | Msa0047650:intron | 35.0% | |
| ! | GTTGCAATGACTTAGGATTT+TGG | - | chr1_1:80727800-80727819 | None:intergenic | 35.0% |
| GTAAAAGGTTGCAATGACTT+AGG | - | chr1_1:80727807-80727826 | None:intergenic | 35.0% | |
| !!! | GGGGTTTAGAAAGTATTTTG+CGG | + | chr1_1:80727927-80727946 | Msa0047650:intron | 35.0% |
| GGTCAGGAAATAAAAAACAG+AGG | - | chr1_1:80728039-80728058 | None:intergenic | 35.0% | |
| ! | ACATATGGTGATGATACACT+CGG | + | chr1_1:80728172-80728191 | Msa0047650:intron | 35.0% |
| AATCCTGTACCAAAGATTGA+TGG | + | chr1_1:80728281-80728300 | Msa0047650:intron | 35.0% | |
| AATCCATCAATCTTTGGTAC+AGG | - | chr1_1:80728287-80728306 | None:intergenic | 35.0% | |
| CTGATCTTCAAATAGTCTCT+AGG | - | chr1_1:80728420-80728439 | None:intergenic | 35.0% | |
| CTAGAGACTATTTGAAGATC+AGG | + | chr1_1:80728418-80728437 | Msa0047650:intron | 35.0% | |
| ATTTGAAGATCAGGAAGCAA+AGG | + | chr1_1:80728427-80728446 | Msa0047650:intron | 35.0% | |
| AATTGCAGCACACAGATATA+TGG | - | chr1_1:80728722-80728741 | None:intergenic | 35.0% | |
| TTCAGATAGTGACATTCTGT+AGG | + | chr1_1:80728837-80728856 | Msa0047650:intron | 35.0% | |
| ! | TAATTTGAGACTTGCATGCT+TGG | + | chr1_1:80729081-80729100 | Msa0047650:intron | 35.0% |
| !! | AAAGCCAAAGCTGATTTTAG+GGG | - | chr1_1:80729176-80729195 | None:intergenic | 35.0% |
| !! | GAAAGCCAAAGCTGATTTTA+GGG | - | chr1_1:80729177-80729196 | None:intergenic | 35.0% |
| !! | TGAAAGCCAAAGCTGATTTT+AGG | - | chr1_1:80729178-80729197 | None:intergenic | 35.0% |
| ACGGCAGATACAACAAATTA+TGG | - | chr1_1:80729226-80729245 | None:intergenic | 35.0% | |
| !! | TAATTTGTTGTATCTGCCGT+TGG | + | chr1_1:80729226-80729245 | Msa0047650:intron | 35.0% |
| !! | TGCGCAAGATTTTGTTTGTA+TGG | + | chr1_1:80729310-80729329 | Msa0047650:intron | 35.0% |
| !! | TTTTGTTTGTATGGAGTTGG+CGG | + | chr1_1:80729319-80729338 | Msa0047650:intron | 35.0% |
| AAGAAAACGTGTGAATAGAG+AGG | + | chr1_1:80729528-80729547 | Msa0047650:intron | 35.0% | |
| ! | AATGTTCTTGTTTAAGGGTG+AGG | + | chr1_1:80729554-80729573 | Msa0047650:intron | 35.0% |
| ! | TACTTCAGCTAAGGATTTTC+TGG | + | chr1_1:80729669-80729688 | Msa0047650:intron | 35.0% |
| AACCCACCAGAAAATCTATT+TGG | + | chr1_1:80729719-80729738 | Msa0047650:CDS | 35.0% | |
| ACCCACCAGAAAATCTATTT+GGG | + | chr1_1:80729720-80729739 | Msa0047650:CDS | 35.0% | |
| !! | TCCCAAATAGATTTTCTGGT+GGG | - | chr1_1:80729724-80729743 | None:intergenic | 35.0% |
| ! | CAAGTCCCAAATAGATTTTC+TGG | - | chr1_1:80729728-80729747 | None:intergenic | 35.0% |
| !!! | GGTTTTTTGGTTTGGTTCTG+TGG | - | chr1_1:80726922-80726941 | None:intergenic | 40.0% |
| !!! | CGGAGTTTTGAGATAAGTGT+AGG | - | chr1_1:80726944-80726963 | None:intergenic | 40.0% |
| CAAAACTCCGACAACTGAAA+TGG | + | chr1_1:80726954-80726973 | Msa0047650:exon | 40.0% | |
| AGATGATCGGAACATTGATC+TGG | - | chr1_1:80726992-80727011 | None:intergenic | 40.0% | |
| ATCTGGTTGCAGAAGATGAT+CGG | - | chr1_1:80727005-80727024 | None:intergenic | 40.0% | |
| TTATTGGATGCCATTCGGAA+CGG | - | chr1_1:80727069-80727088 | None:intergenic | 40.0% | |
| GAGGTTTATTGGATGCCATT+CGG | - | chr1_1:80727074-80727093 | None:intergenic | 40.0% | |
| TACCTGAACATGGATGTTGA+TGG | - | chr1_1:80727102-80727121 | None:intergenic | 40.0% | |
| TAGCATTAGGTGCACTTTGA+AGG | + | chr1_1:80727473-80727492 | Msa0047650:intron | 40.0% | |
| CATGAGTAGTCGTGTTTGTA+AGG | - | chr1_1:80727605-80727624 | None:intergenic | 40.0% | |
| ! | CAAGAGTAAGTCTCGTGTTT+TGG | - | chr1_1:80727681-80727700 | None:intergenic | 40.0% |
| GGAATGCACTCAAGAGTAAA+AGG | - | chr1_1:80727822-80727841 | None:intergenic | 40.0% | |
| TTAGGTAGCTAAGCATCTCT+AGG | + | chr1_1:80728076-80728095 | Msa0047650:intron | 40.0% | |
| CACTGTAATGCATGCAAATC+AGG | - | chr1_1:80728750-80728769 | None:intergenic | 40.0% | |
| ATGTCCCCTAAAATCAGCTT+TGG | + | chr1_1:80729169-80729188 | Msa0047650:intron | 40.0% | |
| AAGCCGTCTTCTTATACCAA+CGG | - | chr1_1:80729245-80729264 | None:intergenic | 40.0% | |
| GAAATTGCCCAATATATGGG+TGG | - | chr1_1:80729269-80729288 | None:intergenic | 40.0% | |
| GTTTAAGGGTGAGGAAATGA+AGG | + | chr1_1:80729563-80729582 | Msa0047650:intron | 40.0% | |
| ! | GTCCCAAATAGATTTTCTGG+TGG | - | chr1_1:80729725-80729744 | None:intergenic | 40.0% |
| GTGGAAGCCATTTCAGTTGT+CGG | - | chr1_1:80726964-80726983 | None:intergenic | 45.0% | |
| TGATCGGAACATTGATCTGG+CGG | - | chr1_1:80726989-80727008 | None:intergenic | 45.0% | |
| ! | TGATGGCGAGAGAGGTTTAT+TGG | - | chr1_1:80727085-80727104 | None:intergenic | 45.0% |
| GAAGCAGTAACAGTGTGGTA+AGG | - | chr1_1:80727250-80727269 | None:intergenic | 45.0% | |
| ! | AACTACGCTTGGCTTTCAGA+AGG | + | chr1_1:80727307-80727326 | Msa0047650:CDS | 45.0% |
| GTAGTCGTGTTTGTAAGGTG+AGG | - | chr1_1:80727600-80727619 | None:intergenic | 45.0% | |
| TCCAAGATTCCTCCATTGAG+TGG | + | chr1_1:80727640-80727659 | Msa0047650:intron | 45.0% | |
| CCAAGATTCCTCCATTGAGT+GGG | + | chr1_1:80727641-80727660 | Msa0047650:intron | 45.0% | |
| CAAGATTCCTCCATTGAGTG+GGG | + | chr1_1:80727642-80727661 | Msa0047650:intron | 45.0% | |
| CATGTGATAACCCCACTCAA+TGG | - | chr1_1:80727655-80727674 | None:intergenic | 45.0% | |
| CACTCTTAATACTAGGGTGC+TGG | - | chr1_1:80727724-80727743 | None:intergenic | 45.0% | |
| ! | CTGGCTTGTGCTTACGAATA+TGG | - | chr1_1:80728220-80728239 | None:intergenic | 45.0% |
| GTGAGGAGACAAGTGTAGTA+GGG | - | chr1_1:80728318-80728337 | None:intergenic | 45.0% | |
| TGAAGATCAGGAAGCAAAGG+TGG | + | chr1_1:80728430-80728449 | Msa0047650:intron | 45.0% | |
| CTGCCGTTGGTATAAGAAGA+CGG | + | chr1_1:80729239-80729258 | Msa0047650:intron | 45.0% | |
| !! | ACAATCGATTTGGAGGTGAG+AGG | + | chr1_1:80729493-80729512 | Msa0047650:intron | 45.0% |
| !! | CAATCGATTTGGAGGTGAGA+GGG | + | chr1_1:80729494-80729513 | Msa0047650:intron | 45.0% |
| !! | AATCGATTTGGAGGTGAGAG+GGG | + | chr1_1:80729495-80729514 | Msa0047650:intron | 45.0% |
| !! | ATGGATGTTGATGGCGAGAG+AGG | - | chr1_1:80727093-80727112 | None:intergenic | 50.0% |
| CGCCATCAACATCCATGTTC+AGG | + | chr1_1:80727097-80727116 | Msa0047650:CDS | 50.0% | |
| AGCGTAGTTGCGGCTTGAAA+GGG | - | chr1_1:80727296-80727315 | None:intergenic | 50.0% | |
| AAGCGTAGTTGCGGCTTGAA+AGG | - | chr1_1:80727297-80727316 | None:intergenic | 50.0% | |
| TTTCAAGCCGCAACTACGCT+TGG | + | chr1_1:80727296-80727315 | Msa0047650:CDS | 50.0% | |
| CTGAAAGCCAAGCGTAGTTG+CGG | - | chr1_1:80727306-80727325 | None:intergenic | 50.0% | |
| CCCACTCAATGGAGGAATCT+TGG | - | chr1_1:80727644-80727663 | None:intergenic | 50.0% | |
| GTGATAACCCCACTCAATGG+AGG | - | chr1_1:80727652-80727671 | None:intergenic | 50.0% | |
| TGTGGTGTGCTCGTTCTCTT+TGG | + | chr1_1:80728000-80728019 | Msa0047650:intron | 50.0% | |
| GTGGTGTGCTCGTTCTCTTT+GGG | + | chr1_1:80728001-80728020 | Msa0047650:intron | 50.0% | |
| GGTGAGGAGACAAGTGTAGT+AGG | - | chr1_1:80728319-80728338 | None:intergenic | 50.0% | |
| !! | GTTATTTTACGGAGGGGGTG+AGG | - | chr1_1:80728335-80728354 | None:intergenic | 50.0% |
| ATGAGTTCACTGTGCGCTCT+CGG | + | chr1_1:80728772-80728791 | Msa0047650:intron | 50.0% | |
| ACGGCTTGCCACCCATATAT+TGG | + | chr1_1:80729258-80729277 | Msa0047650:intron | 50.0% | |
| CGGCTTGCCACCCATATATT+GGG | + | chr1_1:80729259-80729278 | Msa0047650:intron | 50.0% | |
| TCGGAACATTGATCTGGCGG+CGG | - | chr1_1:80726986-80727005 | None:intergenic | 55.0% | |
| ! | GTTTAGCTTCCGAGGCGACA+CGG | - | chr1_1:80727035-80727054 | None:intergenic | 55.0% |
| ! | ACGAGCTGGTTTAGCTTCCG+AGG | - | chr1_1:80727043-80727062 | None:intergenic | 55.0% |
| ATTCGGAACGGAGAACGAGC+TGG | - | chr1_1:80727057-80727076 | None:intergenic | 55.0% | |
| AGCTCGTTCTCCGTTCCGAA+TGG | + | chr1_1:80727056-80727075 | Msa0047650:CDS | 55.0% | |
| GCGCAGAAGCAGTAACAGTG+TGG | - | chr1_1:80727255-80727274 | None:intergenic | 55.0% | |
| GAACATTGATCTGGCGGCGG+TGG | - | chr1_1:80726983-80727002 | None:intergenic | 60.0% | |
| ATCAGCCTTCCGTGTCGCCT+CGG | + | chr1_1:80727023-80727042 | Msa0047650:CDS | 60.0% | |
| GGCGACACGGAAGGCTGATC+TGG | - | chr1_1:80727022-80727041 | None:intergenic | 65.0% | |
| AGCTTCCGAGGCGACACGGA+AGG | - | chr1_1:80727031-80727050 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 80726914 | 80729864 | 80726914 | ID=Msa0047650;Name=Msa0047650 |
| chr1_1 | mRNA | 80726914 | 80729864 | 80726914 | ID=Msa0047650-mRNA-1;Parent=Msa0047650;Name=Msa0047650-mRNA-1;_AED=0.58;_eAED=0.58;_QI=59|0.5|0.66|0.66|1|1|3|0|151 |
| chr1_1 | exon | 80726914 | 80727118 | 80726914 | ID=Msa0047650-mRNA-1:exon:27883;Parent=Msa0047650-mRNA-1 |
| chr1_1 | exon | 80727207 | 80727328 | 80727207 | ID=Msa0047650-mRNA-1:exon:27884;Parent=Msa0047650-mRNA-1 |
| chr1_1 | exon | 80729677 | 80729864 | 80729677 | ID=Msa0047650-mRNA-1:exon:27885;Parent=Msa0047650-mRNA-1 |
| chr1_1 | five_prime_UTR | 80726914 | 80726972 | 80726914 | ID=Msa0047650-mRNA-1:five_prime_utr;Parent=Msa0047650-mRNA-1 |
| chr1_1 | CDS | 80726973 | 80727118 | 80726973 | ID=Msa0047650-mRNA-1:cds;Parent=Msa0047650-mRNA-1 |
| chr1_1 | CDS | 80727207 | 80727328 | 80727207 | ID=Msa0047650-mRNA-1:cds;Parent=Msa0047650-mRNA-1 |
| chr1_1 | CDS | 80729677 | 80729864 | 80729677 | ID=Msa0047650-mRNA-1:cds;Parent=Msa0047650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
