Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544720 | XP_003607503.1 | 96.703 | 91 | 3 | 0 | 1 | 91 | 1 | 91 | 5.62e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544720 | sp|Q93ZJ3|NFD6_ARATH | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 5.44e-19 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544720 | G7JTX2 | 96.703 | 91 | 3 | 0 | 1 | 91 | 1 | 91 | 2.69e-53 | 170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044890 | Msa0544720 | 0.809926 | 1.485961e-50 | -8.615850e-47 |
| Msa0047650 | Msa0544720 | 0.913017 | 1.001339e-83 | -8.615850e-47 |
| Msa0068970 | Msa0544720 | 0.820197 | 7.788830e-53 | -8.615850e-47 |
| Msa0223950 | Msa0544720 | 0.829442 | 5.136582e-55 | -8.615850e-47 |
| Msa0265200 | Msa0544720 | 0.820174 | 7.885481e-53 | -8.615850e-47 |
| Msa0342850 | Msa0544720 | 0.846871 | 1.653640e-59 | -8.615850e-47 |
| Msa0486070 | Msa0544720 | 0.813221 | 2.856444e-51 | -8.615850e-47 |
| Msa0544720 | Msa0554210 | 0.827912 | 1.203784e-54 | -8.615850e-47 |
| Msa0544720 | Msa0608260 | 0.989966 | 1.899539e-180 | -8.615850e-47 |
| Msa0544720 | Msa0691330 | 0.989477 | 2.729500e-178 | -8.615850e-47 |
| Msa0544720 | Msa0930490 | 0.860452 | 2.045214e-63 | -8.615850e-47 |
| Msa0544720 | Msa1040160 | 0.802118 | 6.529292e-49 | -8.615850e-47 |
| Msa0544720 | Msa1079920 | 0.833457 | 5.275196e-56 | -8.615850e-47 |
| Msa0544720 | Msa1083370 | 0.807002 | 6.252212e-50 | -8.615850e-47 |
| Msa0544720 | Msa1124850 | 0.840352 | 9.154486e-58 | -8.615850e-47 |
| Msa0544720 | Msa1128120 | 0.838290 | 3.140716e-57 | -8.615850e-47 |
| Msa0544720 | Msa1167540 | 0.820721 | 5.904710e-53 | -8.615850e-47 |
| Msa0544720 | Msa1418760 | 0.803288 | 3.744642e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544720 | MtrunA17_Chr4g0040461 | 96.703 | 91 | 3 | 0 | 1 | 91 | 1 | 91 | 5.17e-57 | 170 |
| Msa0544720 | MtrunA17_Chr2g0324851 | 71.111 | 90 | 24 | 1 | 1 | 90 | 4 | 91 | 4.63e-28 | 97.4 |
| Msa0544720 | MtrunA17_Chr2g0282671 | 47.674 | 86 | 42 | 2 | 4 | 89 | 3 | 85 | 2.17e-15 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544720 | AT2G20585.6 | 59.155 | 71 | 27 | 1 | 21 | 91 | 28 | 96 | 4.04e-21 | 80.5 |
| Msa0544720 | AT2G20585.7 | 59.155 | 71 | 27 | 1 | 21 | 91 | 28 | 96 | 4.04e-21 | 80.5 |
| Msa0544720 | AT2G20585.4 | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 4.15e-21 | 80.1 |
| Msa0544720 | AT2G20585.3 | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 4.15e-21 | 80.1 |
| Msa0544720 | AT2G20585.5 | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 5.53e-20 | 77.4 |
| Msa0544720 | AT2G20585.1 | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 5.53e-20 | 77.4 |
| Msa0544720 | AT2G20585.2 | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 6.44e-20 | 77.4 |
| Msa0544720 | AT2G33847.2 | 52.174 | 92 | 36 | 4 | 4 | 91 | 2 | 89 | 1.02e-19 | 76.3 |
| Msa0544720 | AT1G28395.2 | 52.688 | 93 | 34 | 4 | 4 | 90 | 2 | 90 | 2.36e-19 | 75.5 |
| Msa0544720 | AT1G28395.3 | 52.688 | 93 | 34 | 4 | 4 | 90 | 2 | 90 | 2.36e-19 | 75.5 |
| Msa0544720 | AT1G28395.1 | 52.688 | 93 | 34 | 4 | 4 | 90 | 2 | 90 | 2.36e-19 | 75.5 |
| Msa0544720 | AT2G33847.1 | 54.762 | 84 | 31 | 3 | 4 | 83 | 2 | 82 | 6.04e-19 | 74.7 |
| Msa0544720 | AT1G28395.6 | 51.613 | 93 | 35 | 4 | 4 | 90 | 2 | 90 | 2.14e-18 | 73.2 |
| Msa0544720 | AT1G28395.4 | 51.613 | 93 | 35 | 4 | 4 | 90 | 2 | 90 | 2.14e-18 | 73.2 |
| Msa0544720 | AT1G28395.5 | 51.064 | 94 | 36 | 4 | 4 | 91 | 2 | 91 | 2.64e-18 | 72.8 |
Find 45 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGAGCATAATCTTTAT+TGG | 0.213388 | 4_1:+33614143 | None:intergenic |
| AAAGGAAATTGCCCAATATA+TGG | 0.244845 | 4_1:+33613886 | None:intergenic |
| TGATGGCGAGAGAGGTTTAT+TGG | 0.267866 | 4_1:+33616073 | None:intergenic |
| ACGGCTTGCCACCCATATAT+TGG | 0.290334 | 4_1:-33613898 | Msa0544720:three_prime_UTR |
| ATTAAAATATTCGAGATAAA+AGG | 0.309779 | 4_1:+33613868 | None:intergenic |
| ACGGCAGATACAACAAATTA+TGG | 0.323998 | 4_1:+33613933 | None:intergenic |
| CGCCATCAACATCCATGTTC+AGG | 0.345694 | 4_1:-33616058 | Msa0544720:intron |
| CGGCTTGCCACCCATATATT+GGG | 0.405119 | 4_1:-33613897 | Msa0544720:three_prime_UTR |
| TGCGCGAGATTATGTTTGTA+TGG | 0.411281 | 4_1:-33613846 | Msa0544720:three_prime_UTR |
| CAAAACTCCGACAACTGAAA+TGG | 0.417043 | 4_1:-33616201 | Msa0544720:exon |
| GGCGACACGGAAGGCTGATC+TGG | 0.428480 | 4_1:+33616136 | None:intergenic |
| AGATTATGTTTGTATGGAGT+TGG | 0.444062 | 4_1:-33613840 | Msa0544720:three_prime_UTR |
| TTTCAAGCCGCAACTACGCT+TGG | 0.454615 | 4_1:-33615858 | Msa0544720:CDS |
| AAGCGTAGTTGCGGCTTGAA+AGG | 0.455777 | 4_1:+33615860 | None:intergenic |
| GTGGAAGCCATTTCAGTTGT+CGG | 0.465535 | 4_1:+33616194 | None:intergenic |
| GAACATTGATCTGGCGGCGG+TGG | 0.465977 | 4_1:+33616175 | None:intergenic |
| GAGGTTTATTGGATGCCATT+CGG | 0.480101 | 4_1:+33616084 | None:intergenic |
| AAGGAAATTGCCCAATATAT+GGG | 0.490703 | 4_1:+33613887 | None:intergenic |
| ATGTCCCCTAAAATCAGCTT+TGG | 0.495090 | 4_1:-33613987 | Msa0544720:three_prime_UTR |
| TAATTTGTTGTATCTGCCGT+TGG | 0.496951 | 4_1:-33613930 | Msa0544720:three_prime_UTR |
| TTATGTTTGTATGGAGTTGG+CGG | 0.500009 | 4_1:-33613837 | Msa0544720:three_prime_UTR |
| ATCAGCCTTCCGTGTCGCCT+CGG | 0.502584 | 4_1:-33616132 | Msa0544720:CDS |
| GATTATGCTCAATATTTACA+TGG | 0.512597 | 4_1:-33614135 | Msa0544720:intron |
| AGATGATCGGAACATTGATC+TGG | 0.517704 | 4_1:+33616166 | None:intergenic |
| AGCGTAGTTGCGGCTTGAAA+GGG | 0.524369 | 4_1:+33615861 | None:intergenic |
| ATCTGGTTGCAGAAGATGAT+CGG | 0.541311 | 4_1:+33616153 | None:intergenic |
| TTAGGTAGCTAAGCATCTCT+AGG | 0.541423 | 4_1:-33615080 | Msa0544720:intron |
| ATGGATGTTGATGGCGAGAG+AGG | 0.553880 | 4_1:+33616065 | None:intergenic |
| AGCTTCCGAGGCGACACGGA+AGG | 0.572335 | 4_1:+33616127 | None:intergenic |
| GAAGCAGTAACAGTGTGGTA+AGG | 0.573128 | 4_1:+33615907 | None:intergenic |
| ATTCGGAACGGAGAACGAGC+TGG | 0.579838 | 4_1:+33616101 | None:intergenic |
| AGCTCGTTCTCCGTTCCGAA+TGG | 0.598424 | 4_1:-33616099 | Msa0544720:CDS |
| GTTTAGCTTCCGAGGCGACA+CGG | 0.598984 | 4_1:+33616123 | None:intergenic |
| ACGAGCTGGTTTAGCTTCCG+AGG | 0.599944 | 4_1:+33616115 | None:intergenic |
| CTGAAAGCCAAGCGTAGTTG+CGG | 0.602315 | 4_1:+33615851 | None:intergenic |
| TACCTGAACATGGATGTTGA+TGG | 0.605060 | 4_1:+33616056 | None:intergenic |
| TTATTGGATGCCATTCGGAA+CGG | 0.606198 | 4_1:+33616089 | None:intergenic |
| CTGCCGTTGGTATAAGAAGA+CGG | 0.607861 | 4_1:-33613917 | Msa0544720:three_prime_UTR |
| AACTACGCTTGGCTTTCAGA+AGG | 0.611860 | 4_1:-33615847 | Msa0544720:intron |
| AAGCCGTCTTCTTATACCAA+CGG | 0.630058 | 4_1:+33613914 | None:intergenic |
| TCGGAACATTGATCTGGCGG+CGG | 0.641753 | 4_1:+33616172 | None:intergenic |
| TGATCGGAACATTGATCTGG+CGG | 0.646708 | 4_1:+33616169 | None:intergenic |
| GAAATTGCCCAATATATGGG+TGG | 0.665746 | 4_1:+33613890 | None:intergenic |
| TATCGATTAATACCTGAACA+TGG | 0.666866 | 4_1:+33616046 | None:intergenic |
| GCGCAGAAGCAGTAACAGTG+TGG | 0.726110 | 4_1:+33615902 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTTTTTCTTGTTATT+CGG | - | chr4_1:33614646-33614665 | Msa0544720:intron | 15.0% |
| !! | TAATAAAAATTAGTAGAGTT+AGG | - | chr4_1:33614746-33614765 | Msa0544720:intron | 15.0% |
| !! | AATAAAAATTAGTAGAGTTA+GGG | - | chr4_1:33614747-33614766 | Msa0544720:intron | 15.0% |
| !!! | TCTTTCTACAATTAATTTTT+CGG | - | chr4_1:33614898-33614917 | Msa0544720:intron | 15.0% |
| !!! | TAGTTGTATTTGTTATTTTA+CGG | + | chr4_1:33615133-33615152 | None:intergenic | 15.0% |
| !! | CTAGTTATTTGATATTATTT+AGG | - | chr4_1:33615314-33615333 | Msa0544720:intron | 15.0% |
| !! | ATTAAAATATTCGAGATAAA+AGG | + | chr4_1:33616078-33616097 | None:intergenic | 15.0% |
| !!! | TTTTTGTGTGAAATGTAATT+AGG | - | chr4_1:33613974-33613993 | Msa0544720:three_prime_UTR | 20.0% |
| !!! | GTATTTTATCATGATTACAA+TGG | - | chr4_1:33614323-33614342 | Msa0544720:intron | 20.0% |
| !! | AATGTTAAGATTTATCAGAA+TGG | - | chr4_1:33614695-33614714 | Msa0544720:intron | 20.0% |
| !! | ATGTTAAGATTTATCAGAAT+GGG | - | chr4_1:33614696-33614715 | Msa0544720:intron | 20.0% |
| !!! | CTTTCTACAATTAATTTTTC+GGG | - | chr4_1:33614899-33614918 | Msa0544720:intron | 20.0% |
| !! | AACTGAGATTAAATAACATA+TGG | - | chr4_1:33614944-33614963 | Msa0544720:intron | 20.0% |
| !!! | TACAAACAAAAAAAAGTGTA+TGG | + | chr4_1:33615182-33615201 | None:intergenic | 20.0% |
| !!! | ATACACTTTTTTTTGTTTGT+AGG | - | chr4_1:33615181-33615200 | Msa0544720:intron | 20.0% |
| !!! | GATTCTTTCTTTCTTTTTTA+AGG | - | chr4_1:33615589-33615608 | Msa0544720:intron | 20.0% |
| !! | ATATTGAGCATAATCTTTAT+TGG | + | chr4_1:33615803-33615822 | None:intergenic | 20.0% |
| ! | GGTATTATCAATTCTACTAA+TGG | - | chr4_1:33614117-33614136 | Msa0544720:intron | 25.0% |
| ! | ATTTGATTACTCTTAGCATT+AGG | - | chr4_1:33614249-33614268 | Msa0544720:intron | 25.0% |
| !! | CACTTTGAAGGAAATTAAAT+TGG | - | chr4_1:33614274-33614293 | Msa0544720:intron | 25.0% |
| ! | CGTATATATGAGTTTATAAG+CGG | - | chr4_1:33614356-33614375 | Msa0544720:intron | 25.0% |
| ! | TGTTAAGATTTATCAGAATG+GGG | - | chr4_1:33614697-33614716 | Msa0544720:intron | 25.0% |
| ! | TTGAAAAAAACTTTGTAGTG+TGG | - | chr4_1:33614770-33614789 | Msa0544720:intron | 25.0% |
| !!! | TGTTTTTTATTTCCTGACAT+TGG | - | chr4_1:33614828-33614847 | Msa0544720:intron | 25.0% |
| !!! | CATTGGTTTAATTTTGACTT+AGG | - | chr4_1:33614845-33614864 | Msa0544720:intron | 25.0% |
| ! | GTCAAGCATAAAAAAATAAC+TGG | + | chr4_1:33615026-33615045 | None:intergenic | 25.0% |
| ! | TAAACTAATCCATCAATCTT+TGG | + | chr4_1:33615080-33615099 | None:intergenic | 25.0% |
| !!! | TGTATTTGTTATTTTACGGA+GGG | + | chr4_1:33615129-33615148 | None:intergenic | 25.0% |
| !!! | TTGTATTTGTTATTTTACGG+AGG | + | chr4_1:33615130-33615149 | None:intergenic | 25.0% |
| ! | CAATAAGATTCATAAAGAGA+AGG | + | chr4_1:33615430-33615449 | None:intergenic | 25.0% |
| ! | AATTATCATTTGTCTGCAAT+TGG | - | chr4_1:33615475-33615494 | Msa0544720:intron | 25.0% |
| !!! | TCTTTCTTTCTTTTTTAAGG+CGG | - | chr4_1:33615592-33615611 | Msa0544720:intron | 25.0% |
| !!! | TAGAGCACTTTTTATTAACA+TGG | - | chr4_1:33615662-33615681 | Msa0544720:intron | 25.0% |
| ! | GATTATGCTCAATATTTACA+TGG | - | chr4_1:33615808-33615827 | Msa0544720:intron | 25.0% |
| !! | ACAAGAAAAAAGTACAACTT+TGG | + | chr4_1:33615840-33615859 | None:intergenic | 25.0% |
| !! | ATTCAATGTTTTGCTTGTAT+AGG | - | chr4_1:33615927-33615946 | Msa0544720:CDS | 25.0% |
| ! | ACGTAATAAAGAAAAACGAA+AGG | + | chr4_1:33616183-33616202 | None:intergenic | 25.0% |
| ! | TATCGATTAATACCTGAACA+TGG | + | chr4_1:33613900-33613919 | None:intergenic | 30.0% |
| ACACAAAAACTCAATTCAAC+AGG | + | chr4_1:33614003-33614022 | None:intergenic | 30.0% | |
| CAATGTGTTTATCTGCAATT+TGG | - | chr4_1:33614152-33614171 | Msa0544720:three_prime_UTR | 30.0% | |
| ! | ATTACAACTCGTTGTTCTTT+TGG | - | chr4_1:33614226-33614245 | Msa0544720:intron | 30.0% |
| ATATATGAGTTTATAAGCGG+AGG | - | chr4_1:33614359-33614378 | Msa0544720:intron | 30.0% | |
| ! | TTGCAATGACTTAGGATTTT+GGG | + | chr4_1:33614588-33614607 | None:intergenic | 30.0% |
| ! | GATTTTACTTGCTTAACGTT+AGG | + | chr4_1:33614632-33614651 | None:intergenic | 30.0% |
| AAGATATCAAACAACATGAC+AGG | + | chr4_1:33614674-33614693 | None:intergenic | 30.0% | |
| AAAAACAGAGGTAAACTAGT+AGG | + | chr4_1:33614815-33614834 | None:intergenic | 30.0% | |
| TGTCAGGAAATAAAAAACAG+AGG | + | chr4_1:33614827-33614846 | None:intergenic | 30.0% | |
| GTCAAAATTAAACCAATGTC+AGG | + | chr4_1:33614843-33614862 | None:intergenic | 30.0% | |
| !!! | TATTTGTTATTTTACGGAGG+GGG | + | chr4_1:33615127-33615146 | None:intergenic | 30.0% |
| !!! | GTATTTGTTATTTTACGGAG+GGG | + | chr4_1:33615128-33615147 | None:intergenic | 30.0% |
| TAAAAAGCTCAACAAATCAC+AGG | + | chr4_1:33615255-33615274 | None:intergenic | 30.0% | |
| ! | CAAAAGATTTTGTTGCTACT+AGG | - | chr4_1:33615277-33615296 | Msa0544720:intron | 30.0% |
| ! | CATGGAAACTTGTTTATCTT+AGG | - | chr4_1:33615680-33615699 | Msa0544720:intron | 30.0% |
| CTGTTGTCTGTTTGTATATT+AGG | - | chr4_1:33615704-33615723 | Msa0544720:intron | 30.0% | |
| !! | ATTACTTTTCTACTTTCAGC+AGG | - | chr4_1:33615747-33615766 | Msa0544720:intron | 30.0% |
| TATGCTCAATATTTACATGG+TGG | - | chr4_1:33615811-33615830 | Msa0544720:intron | 30.0% | |
| GCTTGGACTATTAATAATGT+AGG | - | chr4_1:33615885-33615904 | Msa0544720:CDS | 30.0% | |
| AAGGAAATTGCCCAATATAT+GGG | + | chr4_1:33616059-33616078 | None:intergenic | 30.0% | |
| AAAGGAAATTGCCCAATATA+TGG | + | chr4_1:33616060-33616079 | None:intergenic | 30.0% | |
| AGATTATGTTTGTATGGAGT+TGG | - | chr4_1:33616103-33616122 | Msa0544720:CDS | 30.0% | |
| !!! | AAGTGTAGGGTTTTTTGGTT+TGG | + | chr4_1:33613718-33613737 | None:intergenic | 35.0% |
| !!! | GAGATAAGTGTAGGGTTTTT+TGG | + | chr4_1:33613723-33613742 | None:intergenic | 35.0% |
| !!! | GGAGTTTTGAGATAAGTGTA+GGG | + | chr4_1:33613731-33613750 | None:intergenic | 35.0% |
| GATACACGCATTATCATGAA+CGG | - | chr4_1:33613916-33613935 | Msa0544720:three_prime_UTR | 35.0% | |
| ! | AAGAGTAAGTCTCGTGTTTT+GGG | + | chr4_1:33614469-33614488 | None:intergenic | 35.0% |
| CATTGGCACTCTTAATACTA+GGG | + | chr4_1:33614519-33614538 | None:intergenic | 35.0% | |
| ACATTGGCACTCTTAATACT+AGG | + | chr4_1:33614520-33614539 | None:intergenic | 35.0% | |
| GCTCTTCTTAGCAATAACAT+TGG | + | chr4_1:33614536-33614555 | None:intergenic | 35.0% | |
| ATGTTATTGCTAAGAAGAGC+TGG | - | chr4_1:33614536-33614555 | Msa0544720:intron | 35.0% | |
| ! | GTTGCAATGACTTAGGATTT+TGG | + | chr4_1:33614589-33614608 | None:intergenic | 35.0% |
| GTAAAAGGTTGCAATGACTT+AGG | + | chr4_1:33614596-33614615 | None:intergenic | 35.0% | |
| !!! | GGGGTTTAGAAAGTATTTTG+CGG | - | chr4_1:33614716-33614735 | Msa0544720:intron | 35.0% |
| ! | ACATATGGTGATGATACACT+CGG | - | chr4_1:33614959-33614978 | Msa0544720:intron | 35.0% |
| GTACAGGATTACGACATTTA+TGG | + | chr4_1:33615058-33615077 | None:intergenic | 35.0% | |
| AATCCTGTACCAAAGATTGA+TGG | - | chr4_1:33615068-33615087 | Msa0544720:three_prime_UTR | 35.0% | |
| AATCCATCAATCTTTGGTAC+AGG | + | chr4_1:33615074-33615093 | None:intergenic | 35.0% | |
| CTGATCTTCAAATAGTCTCT+AGG | + | chr4_1:33615207-33615226 | None:intergenic | 35.0% | |
| CTAGAGACTATTTGAAGATC+AGG | - | chr4_1:33615205-33615224 | Msa0544720:intron | 35.0% | |
| ATTTGAAGATCAGGAAGCAA+AGG | - | chr4_1:33615214-33615233 | Msa0544720:intron | 35.0% | |
| AATTGCAGCACACAGATATA+TGG | + | chr4_1:33615509-33615528 | None:intergenic | 35.0% | |
| TTCAGATAGTGACATTCTGT+AGG | - | chr4_1:33615624-33615643 | Msa0544720:intron | 35.0% | |
| ! | TAATTTGAGACTTGCATGCT+TGG | - | chr4_1:33615868-33615887 | Msa0544720:CDS | 35.0% |
| !! | AAAGCCAAAGCTGATTTTAG+GGG | + | chr4_1:33615963-33615982 | None:intergenic | 35.0% |
| !! | GAAAGCCAAAGCTGATTTTA+GGG | + | chr4_1:33615964-33615983 | None:intergenic | 35.0% |
| !! | TGAAAGCCAAAGCTGATTTT+AGG | + | chr4_1:33615965-33615984 | None:intergenic | 35.0% |
| ACGGCAGATACAACAAATTA+TGG | + | chr4_1:33616013-33616032 | None:intergenic | 35.0% | |
| !! | TAATTTGTTGTATCTGCCGT+TGG | - | chr4_1:33616013-33616032 | Msa0544720:intron | 35.0% |
| TTATGTTTGTATGGAGTTGG+CGG | - | chr4_1:33616106-33616125 | Msa0544720:CDS | 35.0% | |
| !!! | GGTTTTTTGGTTTGGTTCTG+TGG | + | chr4_1:33613710-33613729 | None:intergenic | 40.0% |
| !!! | CGGAGTTTTGAGATAAGTGT+AGG | + | chr4_1:33613732-33613751 | None:intergenic | 40.0% |
| CAAAACTCCGACAACTGAAA+TGG | - | chr4_1:33613742-33613761 | Msa0544720:three_prime_UTR | 40.0% | |
| AGATGATCGGAACATTGATC+TGG | + | chr4_1:33613780-33613799 | None:intergenic | 40.0% | |
| ATCTGGTTGCAGAAGATGAT+CGG | + | chr4_1:33613793-33613812 | None:intergenic | 40.0% | |
| TTATTGGATGCCATTCGGAA+CGG | + | chr4_1:33613857-33613876 | None:intergenic | 40.0% | |
| GAGGTTTATTGGATGCCATT+CGG | + | chr4_1:33613862-33613881 | None:intergenic | 40.0% | |
| TACCTGAACATGGATGTTGA+TGG | + | chr4_1:33613890-33613909 | None:intergenic | 40.0% | |
| TAGCATTAGGTGCACTTTGA+AGG | - | chr4_1:33614262-33614281 | Msa0544720:intron | 40.0% | |
| CATGAGTAGTCGTGTTTGTA+AGG | + | chr4_1:33614394-33614413 | None:intergenic | 40.0% | |
| ! | CAAGAGTAAGTCTCGTGTTT+TGG | + | chr4_1:33614470-33614489 | None:intergenic | 40.0% |
| GGAATGCACTCAAGAGTAAA+AGG | + | chr4_1:33614611-33614630 | None:intergenic | 40.0% | |
| TTAGGTAGCTAAGCATCTCT+AGG | - | chr4_1:33614863-33614882 | Msa0544720:intron | 40.0% | |
| CACTGTAATGCATGCAAATC+AGG | + | chr4_1:33615537-33615556 | None:intergenic | 40.0% | |
| ATGTCCCCTAAAATCAGCTT+TGG | - | chr4_1:33615956-33615975 | Msa0544720:intron | 40.0% | |
| AAGCCGTCTTCTTATACCAA+CGG | + | chr4_1:33616032-33616051 | None:intergenic | 40.0% | |
| GAAATTGCCCAATATATGGG+TGG | + | chr4_1:33616056-33616075 | None:intergenic | 40.0% | |
| TGCGCGAGATTATGTTTGTA+TGG | - | chr4_1:33616097-33616116 | Msa0544720:CDS | 40.0% | |
| GTGGAAGCCATTTCAGTTGT+CGG | + | chr4_1:33613752-33613771 | None:intergenic | 45.0% | |
| TGATCGGAACATTGATCTGG+CGG | + | chr4_1:33613777-33613796 | None:intergenic | 45.0% | |
| ! | TGATGGCGAGAGAGGTTTAT+TGG | + | chr4_1:33613873-33613892 | None:intergenic | 45.0% |
| GAAGCAGTAACAGTGTGGTA+AGG | + | chr4_1:33614039-33614058 | None:intergenic | 45.0% | |
| ! | AACTACGCTTGGCTTTCAGA+AGG | - | chr4_1:33614096-33614115 | Msa0544720:intron | 45.0% |
| GTAGTCGTGTTTGTAAGGTG+AGG | + | chr4_1:33614389-33614408 | None:intergenic | 45.0% | |
| TCCAAGATTCCTCCATTGAG+TGG | - | chr4_1:33614429-33614448 | Msa0544720:intron | 45.0% | |
| CCAAGATTCCTCCATTGAGT+GGG | - | chr4_1:33614430-33614449 | Msa0544720:intron | 45.0% | |
| CAAGATTCCTCCATTGAGTG+GGG | - | chr4_1:33614431-33614450 | Msa0544720:intron | 45.0% | |
| CATGTGATAACCCCACTCAA+TGG | + | chr4_1:33614444-33614463 | None:intergenic | 45.0% | |
| CACTCTTAATACTAGGGTGC+TGG | + | chr4_1:33614513-33614532 | None:intergenic | 45.0% | |
| ! | CTGGCTTGTGCTTACGAATA+TGG | + | chr4_1:33615007-33615026 | None:intergenic | 45.0% |
| GTGAGGAGACAAGTGTAGTA+GGG | + | chr4_1:33615105-33615124 | None:intergenic | 45.0% | |
| TGAAGATCAGGAAGCAAAGG+TGG | - | chr4_1:33615217-33615236 | Msa0544720:intron | 45.0% | |
| CTGCCGTTGGTATAAGAAGA+CGG | - | chr4_1:33616026-33616045 | Msa0544720:intron | 45.0% | |
| !! | ATGGATGTTGATGGCGAGAG+AGG | + | chr4_1:33613881-33613900 | None:intergenic | 50.0% |
| CGCCATCAACATCCATGTTC+AGG | - | chr4_1:33613885-33613904 | Msa0544720:three_prime_UTR | 50.0% | |
| AGCGTAGTTGCGGCTTGAAA+GGG | + | chr4_1:33614085-33614104 | None:intergenic | 50.0% | |
| AAGCGTAGTTGCGGCTTGAA+AGG | + | chr4_1:33614086-33614105 | None:intergenic | 50.0% | |
| TTTCAAGCCGCAACTACGCT+TGG | - | chr4_1:33614085-33614104 | Msa0544720:intron | 50.0% | |
| CTGAAAGCCAAGCGTAGTTG+CGG | + | chr4_1:33614095-33614114 | None:intergenic | 50.0% | |
| CCCACTCAATGGAGGAATCT+TGG | + | chr4_1:33614433-33614452 | None:intergenic | 50.0% | |
| GTGATAACCCCACTCAATGG+AGG | + | chr4_1:33614441-33614460 | None:intergenic | 50.0% | |
| TGTGGTGTGCTCGTTCTCTT+TGG | - | chr4_1:33614788-33614807 | Msa0544720:intron | 50.0% | |
| GTGGTGTGCTCGTTCTCTTT+GGG | - | chr4_1:33614789-33614808 | Msa0544720:intron | 50.0% | |
| GGTGAGGAGACAAGTGTAGT+AGG | + | chr4_1:33615106-33615125 | None:intergenic | 50.0% | |
| !! | GTTATTTTACGGAGGGGGTG+AGG | + | chr4_1:33615122-33615141 | None:intergenic | 50.0% |
| ATGAGTTCACTGTGCGCTCT+CGG | - | chr4_1:33615559-33615578 | Msa0544720:intron | 50.0% | |
| ACGGCTTGCCACCCATATAT+TGG | - | chr4_1:33616045-33616064 | Msa0544720:intron | 50.0% | |
| CGGCTTGCCACCCATATATT+GGG | - | chr4_1:33616046-33616065 | Msa0544720:intron | 50.0% | |
| TCGGAACATTGATCTGGCGG+CGG | + | chr4_1:33613774-33613793 | None:intergenic | 55.0% | |
| ! | GTTTAGCTTCCGAGGCGACA+CGG | + | chr4_1:33613823-33613842 | None:intergenic | 55.0% |
| ! | ACGAGCTGGTTTAGCTTCCG+AGG | + | chr4_1:33613831-33613850 | None:intergenic | 55.0% |
| ATTCGGAACGGAGAACGAGC+TGG | + | chr4_1:33613845-33613864 | None:intergenic | 55.0% | |
| AGCTCGTTCTCCGTTCCGAA+TGG | - | chr4_1:33613844-33613863 | Msa0544720:three_prime_UTR | 55.0% | |
| GCGCAGAAGCAGTAACAGTG+TGG | + | chr4_1:33614044-33614063 | None:intergenic | 55.0% | |
| GAACATTGATCTGGCGGCGG+TGG | + | chr4_1:33613771-33613790 | None:intergenic | 60.0% | |
| ATCAGCCTTCCGTGTCGCCT+CGG | - | chr4_1:33613811-33613830 | Msa0544720:three_prime_UTR | 60.0% | |
| GGCGACACGGAAGGCTGATC+TGG | + | chr4_1:33613810-33613829 | None:intergenic | 65.0% | |
| AGCTTCCGAGGCGACACGGA+AGG | + | chr4_1:33613819-33613838 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 33613702 | 33616263 | 33613702 | ID=Msa0544720;Name=Msa0544720 |
| chr4_1 | mRNA | 33613702 | 33616263 | 33613702 | ID=Msa0544720-mRNA-1;Parent=Msa0544720;Name=Msa0544720-mRNA-1;_AED=0.27;_eAED=0.27;_QI=59|1|1|1|0.25|0.4|5|422|91 |
| chr4_1 | exon | 33613702 | 33614016 | 33613702 | ID=Msa0544720-mRNA-1:exon:8658;Parent=Msa0544720-mRNA-1 |
| chr4_1 | exon | 33614136 | 33614196 | 33614136 | ID=Msa0544720-mRNA-1:exon:8657;Parent=Msa0544720-mRNA-1 |
| chr4_1 | exon | 33615045 | 33615098 | 33615045 | ID=Msa0544720-mRNA-1:exon:8656;Parent=Msa0544720-mRNA-1 |
| chr4_1 | exon | 33615848 | 33615969 | 33615848 | ID=Msa0544720-mRNA-1:exon:8655;Parent=Msa0544720-mRNA-1 |
| chr4_1 | exon | 33616059 | 33616263 | 33616059 | ID=Msa0544720-mRNA-1:exon:8654;Parent=Msa0544720-mRNA-1 |
| chr4_1 | five_prime_UTR | 33616205 | 33616263 | 33616205 | ID=Msa0544720-mRNA-1:five_prime_utr;Parent=Msa0544720-mRNA-1 |
| chr4_1 | CDS | 33616059 | 33616204 | 33616059 | ID=Msa0544720-mRNA-1:cds;Parent=Msa0544720-mRNA-1 |
| chr4_1 | CDS | 33615848 | 33615969 | 33615848 | ID=Msa0544720-mRNA-1:cds;Parent=Msa0544720-mRNA-1 |
| chr4_1 | CDS | 33615091 | 33615098 | 33615091 | ID=Msa0544720-mRNA-1:cds;Parent=Msa0544720-mRNA-1 |
| chr4_1 | three_prime_UTR | 33615045 | 33615090 | 33615045 | ID=Msa0544720-mRNA-1:three_prime_utr;Parent=Msa0544720-mRNA-1 |
| chr4_1 | three_prime_UTR | 33614136 | 33614196 | 33614136 | ID=Msa0544720-mRNA-1:three_prime_utr;Parent=Msa0544720-mRNA-1 |
| chr4_1 | three_prime_UTR | 33613702 | 33614016 | 33613702 | ID=Msa0544720-mRNA-1:three_prime_utr;Parent=Msa0544720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
