Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608260 | XP_003607503.1 | 96.703 | 91 | 3 | 0 | 1 | 91 | 1 | 91 | 5.62e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608260 | sp|Q93ZJ3|NFD6_ARATH | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 5.44e-19 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044890 | Msa0608260 | 0.800201 | 1.610730e-48 | -8.615850e-47 |
| Msa0047650 | Msa0608260 | 0.913728 | 4.391559e-84 | -8.615850e-47 |
| Msa0068970 | Msa0608260 | 0.809895 | 1.509329e-50 | -8.615850e-47 |
| Msa0608260 | Msa0691330 | 0.987228 | 1.657978e-169 | -8.615850e-47 |
| Msa0608260 | Msa0930490 | 0.870346 | 1.563662e-66 | -8.615850e-47 |
| Msa0608260 | Msa1040160 | 0.815900 | 7.293276e-52 | -8.615850e-47 |
| Msa0608260 | Msa1079920 | 0.824609 | 7.355913e-54 | -8.615850e-47 |
| Msa0608260 | Msa1083370 | 0.824439 | 8.066038e-54 | -8.615850e-47 |
| Msa0608260 | Msa1124850 | 0.840651 | 7.647825e-58 | -8.615850e-47 |
| Msa0608260 | Msa1128120 | 0.835252 | 1.870054e-56 | -8.615850e-47 |
| Msa0608260 | Msa1167540 | 0.834101 | 3.642102e-56 | -8.615850e-47 |
| Msa0608260 | Msa1167550 | 0.807110 | 5.930761e-50 | -8.615850e-47 |
| Msa0608260 | Msa1418760 | 0.803497 | 3.389175e-49 | -8.615850e-47 |
| Msa0222730 | Msa0608260 | 0.803133 | 4.031553e-49 | -8.615850e-47 |
| Msa0223950 | Msa0608260 | 0.818168 | 2.255920e-52 | -8.615850e-47 |
| Msa0264010 | Msa0608260 | 0.804743 | 1.866111e-49 | -8.615850e-47 |
| Msa0265200 | Msa0608260 | 0.806174 | 9.351612e-50 | -8.615850e-47 |
| Msa0342850 | Msa0608260 | 0.844745 | 6.248025e-59 | -8.615850e-47 |
| Msa0486070 | Msa0608260 | 0.803851 | 2.862212e-49 | -8.615850e-47 |
| Msa0544720 | Msa0608260 | 0.989966 | 1.899539e-180 | -8.615850e-47 |
| Msa0554210 | Msa0608260 | 0.808337 | 3.254006e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608260 | MtrunA17_Chr4g0040461 | 96.703 | 91 | 3 | 0 | 1 | 91 | 1 | 91 | 5.17e-57 | 170 |
| Msa0608260 | MtrunA17_Chr2g0324851 | 71.111 | 90 | 24 | 1 | 1 | 90 | 4 | 91 | 4.63e-28 | 97.4 |
| Msa0608260 | MtrunA17_Chr2g0282671 | 47.674 | 86 | 42 | 2 | 4 | 89 | 3 | 85 | 2.17e-15 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608260 | AT2G20585.6 | 59.155 | 71 | 27 | 1 | 21 | 91 | 28 | 96 | 4.04e-21 | 80.5 |
| Msa0608260 | AT2G20585.7 | 59.155 | 71 | 27 | 1 | 21 | 91 | 28 | 96 | 4.04e-21 | 80.5 |
| Msa0608260 | AT2G20585.4 | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 4.15e-21 | 80.1 |
| Msa0608260 | AT2G20585.3 | 60.000 | 70 | 26 | 1 | 21 | 90 | 28 | 95 | 4.15e-21 | 80.1 |
| Msa0608260 | AT2G20585.5 | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 5.53e-20 | 77.4 |
| Msa0608260 | AT2G20585.1 | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 5.53e-20 | 77.4 |
| Msa0608260 | AT2G20585.2 | 59.420 | 69 | 26 | 1 | 21 | 89 | 28 | 94 | 6.44e-20 | 77.4 |
| Msa0608260 | AT2G33847.2 | 52.174 | 92 | 36 | 4 | 4 | 91 | 2 | 89 | 1.02e-19 | 76.3 |
| Msa0608260 | AT1G28395.2 | 52.688 | 93 | 34 | 4 | 4 | 90 | 2 | 90 | 2.36e-19 | 75.5 |
| Msa0608260 | AT1G28395.3 | 52.688 | 93 | 34 | 4 | 4 | 90 | 2 | 90 | 2.36e-19 | 75.5 |
| Msa0608260 | AT1G28395.1 | 52.688 | 93 | 34 | 4 | 4 | 90 | 2 | 90 | 2.36e-19 | 75.5 |
| Msa0608260 | AT2G33847.1 | 54.762 | 84 | 31 | 3 | 4 | 83 | 2 | 82 | 6.04e-19 | 74.7 |
| Msa0608260 | AT1G28395.6 | 51.613 | 93 | 35 | 4 | 4 | 90 | 2 | 90 | 2.14e-18 | 73.2 |
| Msa0608260 | AT1G28395.4 | 51.613 | 93 | 35 | 4 | 4 | 90 | 2 | 90 | 2.14e-18 | 73.2 |
| Msa0608260 | AT1G28395.5 | 51.064 | 94 | 36 | 4 | 4 | 91 | 2 | 91 | 2.64e-18 | 72.8 |
Find 45 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGAGCATAATCTTTAT+TGG | 0.213388 | 4_2:+55259409 | None:intergenic |
| AAAGGAAATTGCCCAATATA+TGG | 0.244845 | 4_2:+55259152 | None:intergenic |
| TGATGGCGAGAGAGGTTTAT+TGG | 0.267866 | 4_2:+55261340 | None:intergenic |
| ACGGCTTGCCACCCATATAT+TGG | 0.290334 | 4_2:-55259164 | Msa0608260:three_prime_UTR |
| ATTAAAATATTCGAGATAAA+AGG | 0.309779 | 4_2:+55259134 | None:intergenic |
| ACGGCAGATACAACAAATTA+TGG | 0.323998 | 4_2:+55259199 | None:intergenic |
| CGCCATCAACATCCATGTTC+AGG | 0.345694 | 4_2:-55261325 | Msa0608260:intron |
| CGGCTTGCCACCCATATATT+GGG | 0.405119 | 4_2:-55259163 | Msa0608260:three_prime_UTR |
| TGCGCGAGATTATGTTTGTA+TGG | 0.411281 | 4_2:-55259112 | Msa0608260:three_prime_UTR |
| CAAAACTCCGACAACTGAAA+TGG | 0.417043 | 4_2:-55261468 | Msa0608260:exon |
| GGCGACACGGAAGGCTGATC+TGG | 0.428480 | 4_2:+55261403 | None:intergenic |
| AGATTATGTTTGTATGGAGT+TGG | 0.444062 | 4_2:-55259106 | Msa0608260:three_prime_UTR |
| TTTCAAGCCGCAACTACGCT+TGG | 0.454615 | 4_2:-55261125 | Msa0608260:CDS |
| AAGCGTAGTTGCGGCTTGAA+AGG | 0.455777 | 4_2:+55261127 | None:intergenic |
| GTGGAAGCCATTTCAGTTGT+CGG | 0.465535 | 4_2:+55261461 | None:intergenic |
| GAACATTGATCTGGCGGCGG+TGG | 0.465977 | 4_2:+55261442 | None:intergenic |
| GAGGTTTATTGGATGCCATT+CGG | 0.480101 | 4_2:+55261351 | None:intergenic |
| AAGGAAATTGCCCAATATAT+GGG | 0.490703 | 4_2:+55259153 | None:intergenic |
| ATGTCCCCTAAAATCAGCTT+TGG | 0.495090 | 4_2:-55259253 | Msa0608260:three_prime_UTR |
| TAATTTGTTGTATCTGCCGT+TGG | 0.496951 | 4_2:-55259196 | Msa0608260:three_prime_UTR |
| TTATGTTTGTATGGAGTTGG+CGG | 0.500009 | 4_2:-55259103 | Msa0608260:three_prime_UTR |
| ATCAGCCTTCCGTGTCGCCT+CGG | 0.502584 | 4_2:-55261399 | Msa0608260:CDS |
| GATTATGCTCAATATTTACA+TGG | 0.512597 | 4_2:-55259401 | Msa0608260:intron |
| AGATGATCGGAACATTGATC+TGG | 0.517704 | 4_2:+55261433 | None:intergenic |
| AGCGTAGTTGCGGCTTGAAA+GGG | 0.524369 | 4_2:+55261128 | None:intergenic |
| ATCTGGTTGCAGAAGATGAT+CGG | 0.541311 | 4_2:+55261420 | None:intergenic |
| TTAGGTAGCTAAGCATCTCT+AGG | 0.541423 | 4_2:-55260346 | Msa0608260:intron |
| ATGGATGTTGATGGCGAGAG+AGG | 0.553880 | 4_2:+55261332 | None:intergenic |
| AGCTTCCGAGGCGACACGGA+AGG | 0.572335 | 4_2:+55261394 | None:intergenic |
| GAAGCAGTAACAGTGTGGTA+AGG | 0.573128 | 4_2:+55261174 | None:intergenic |
| ATTCGGAACGGAGAACGAGC+TGG | 0.579838 | 4_2:+55261368 | None:intergenic |
| AGCTCGTTCTCCGTTCCGAA+TGG | 0.598424 | 4_2:-55261366 | Msa0608260:CDS |
| GTTTAGCTTCCGAGGCGACA+CGG | 0.598984 | 4_2:+55261390 | None:intergenic |
| ACGAGCTGGTTTAGCTTCCG+AGG | 0.599944 | 4_2:+55261382 | None:intergenic |
| CTGAAAGCCAAGCGTAGTTG+CGG | 0.602315 | 4_2:+55261118 | None:intergenic |
| TACCTGAACATGGATGTTGA+TGG | 0.605060 | 4_2:+55261323 | None:intergenic |
| TTATTGGATGCCATTCGGAA+CGG | 0.606198 | 4_2:+55261356 | None:intergenic |
| CTGCCGTTGGTATAAGAAGA+CGG | 0.607861 | 4_2:-55259183 | Msa0608260:three_prime_UTR |
| AACTACGCTTGGCTTTCAGA+AGG | 0.611860 | 4_2:-55261114 | Msa0608260:intron |
| AAGCCGTCTTCTTATACCAA+CGG | 0.630058 | 4_2:+55259180 | None:intergenic |
| TCGGAACATTGATCTGGCGG+CGG | 0.641753 | 4_2:+55261439 | None:intergenic |
| TGATCGGAACATTGATCTGG+CGG | 0.646708 | 4_2:+55261436 | None:intergenic |
| GAAATTGCCCAATATATGGG+TGG | 0.665746 | 4_2:+55259156 | None:intergenic |
| TATCGATTAATACCTGAACA+TGG | 0.666866 | 4_2:+55261313 | None:intergenic |
| GCGCAGAAGCAGTAACAGTG+TGG | 0.726110 | 4_2:+55261169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTTTTTCTTGTTATT+CGG | - | chr4_2:55259912-55259931 | Msa0608260:intron | 15.0% |
| !! | TAATAAAAATTAGTAGAGTT+AGG | - | chr4_2:55260012-55260031 | Msa0608260:intron | 15.0% |
| !! | AATAAAAATTAGTAGAGTTA+GGG | - | chr4_2:55260013-55260032 | Msa0608260:intron | 15.0% |
| !!! | TCTTTCTACAATTAATTTTT+CGG | - | chr4_2:55260165-55260184 | Msa0608260:intron | 15.0% |
| !!! | TAGTTGTATTTGTTATTTTA+CGG | + | chr4_2:55260400-55260419 | None:intergenic | 15.0% |
| !! | CTAGTTATTTGATATTATTT+AGG | - | chr4_2:55260581-55260600 | Msa0608260:intron | 15.0% |
| !! | ATTAAAATATTCGAGATAAA+AGG | + | chr4_2:55261345-55261364 | None:intergenic | 15.0% |
| !!! | TTTTTGTGTGAAATGTAATT+AGG | - | chr4_2:55259240-55259259 | Msa0608260:three_prime_UTR | 20.0% |
| !!! | GTATTTTATCATGATTACAA+TGG | - | chr4_2:55259589-55259608 | Msa0608260:intron | 20.0% |
| !! | AATGTTAAGATTTATCAGAA+TGG | - | chr4_2:55259961-55259980 | Msa0608260:intron | 20.0% |
| !! | ATGTTAAGATTTATCAGAAT+GGG | - | chr4_2:55259962-55259981 | Msa0608260:intron | 20.0% |
| !!! | CTTTCTACAATTAATTTTTC+GGG | - | chr4_2:55260166-55260185 | Msa0608260:intron | 20.0% |
| !! | AACTGAGATTAAATAACATA+TGG | - | chr4_2:55260211-55260230 | Msa0608260:intron | 20.0% |
| !!! | TACAAACAAAAAAAAGTGTA+TGG | + | chr4_2:55260449-55260468 | None:intergenic | 20.0% |
| !!! | ATACACTTTTTTTTGTTTGT+AGG | - | chr4_2:55260448-55260467 | Msa0608260:intron | 20.0% |
| !!! | GATTCTTTCTTTCTTTTTTA+AGG | - | chr4_2:55260856-55260875 | Msa0608260:intron | 20.0% |
| !! | ATATTGAGCATAATCTTTAT+TGG | + | chr4_2:55261070-55261089 | None:intergenic | 20.0% |
| ! | GGTATTATCAATTCTACTAA+TGG | - | chr4_2:55259383-55259402 | Msa0608260:intron | 25.0% |
| ! | ATTTGATTACTCTTAGCATT+AGG | - | chr4_2:55259515-55259534 | Msa0608260:intron | 25.0% |
| !! | CACTTTGAAGGAAATTAAAT+TGG | - | chr4_2:55259540-55259559 | Msa0608260:intron | 25.0% |
| ! | CGTATATATGAGTTTATAAG+CGG | - | chr4_2:55259622-55259641 | Msa0608260:intron | 25.0% |
| ! | TGTTAAGATTTATCAGAATG+GGG | - | chr4_2:55259963-55259982 | Msa0608260:intron | 25.0% |
| ! | TTGAAAAAAACTTTGTAGTG+TGG | - | chr4_2:55260036-55260055 | Msa0608260:intron | 25.0% |
| ! | CTAAGTCAAAATTAAACCAA+TGG | + | chr4_2:55260114-55260133 | None:intergenic | 25.0% |
| !!! | CATTGGTTTAATTTTGACTT+AGG | - | chr4_2:55260112-55260131 | Msa0608260:intron | 25.0% |
| ! | GTCAAGCATAAAAAAATAAC+TGG | + | chr4_2:55260293-55260312 | None:intergenic | 25.0% |
| ! | TAAACTAATCCATCAATCTT+TGG | + | chr4_2:55260347-55260366 | None:intergenic | 25.0% |
| !!! | TGTATTTGTTATTTTACGGA+GGG | + | chr4_2:55260396-55260415 | None:intergenic | 25.0% |
| !!! | TTGTATTTGTTATTTTACGG+AGG | + | chr4_2:55260397-55260416 | None:intergenic | 25.0% |
| ! | CAATAAGATTCATAAAGAGA+AGG | + | chr4_2:55260697-55260716 | None:intergenic | 25.0% |
| ! | AATTATCATTTGTCTGCAAT+TGG | - | chr4_2:55260742-55260761 | Msa0608260:intron | 25.0% |
| !!! | TCTTTCTTTCTTTTTTAAGG+CGG | - | chr4_2:55260859-55260878 | Msa0608260:intron | 25.0% |
| !!! | TAGAGCACTTTTTATTAACA+TGG | - | chr4_2:55260929-55260948 | Msa0608260:intron | 25.0% |
| ! | GATTATGCTCAATATTTACA+TGG | - | chr4_2:55261075-55261094 | Msa0608260:intron | 25.0% |
| !! | ACAAGAAAAAAGTACAACTT+TGG | + | chr4_2:55261107-55261126 | None:intergenic | 25.0% |
| !! | ATTCAATGTTTTGCTTGTAT+AGG | - | chr4_2:55261194-55261213 | Msa0608260:CDS | 25.0% |
| ! | ACGTAATAAAGAAAAACGAA+AGG | + | chr4_2:55261450-55261469 | None:intergenic | 25.0% |
| ! | TATCGATTAATACCTGAACA+TGG | + | chr4_2:55259166-55259185 | None:intergenic | 30.0% |
| ACACAAAAACTCAATTCAAC+AGG | + | chr4_2:55259269-55259288 | None:intergenic | 30.0% | |
| CAATGTGTTTATCTGCAATT+TGG | - | chr4_2:55259418-55259437 | Msa0608260:three_prime_UTR | 30.0% | |
| ! | ATTACAACTCGTTGTTCTTT+TGG | - | chr4_2:55259492-55259511 | Msa0608260:intron | 30.0% |
| ATATATGAGTTTATAAGCGG+AGG | - | chr4_2:55259625-55259644 | Msa0608260:intron | 30.0% | |
| ! | TTGCAATGACTTAGGATTTT+GGG | + | chr4_2:55259854-55259873 | None:intergenic | 30.0% |
| ! | GATTTTACTTGCTTAACGTT+AGG | + | chr4_2:55259898-55259917 | None:intergenic | 30.0% |
| AAGATATCAAACAACATGAC+AGG | + | chr4_2:55259940-55259959 | None:intergenic | 30.0% | |
| AAAAACAGAGGTAAACTAGT+AGG | + | chr4_2:55260081-55260100 | None:intergenic | 30.0% | |
| !!! | GTTTTTTATTTCCTGACCAT+TGG | - | chr4_2:55260095-55260114 | Msa0608260:intron | 30.0% |
| TCAAAATTAAACCAATGGTC+AGG | + | chr4_2:55260109-55260128 | None:intergenic | 30.0% | |
| !!! | TATTTGTTATTTTACGGAGG+GGG | + | chr4_2:55260394-55260413 | None:intergenic | 30.0% |
| !!! | GTATTTGTTATTTTACGGAG+GGG | + | chr4_2:55260395-55260414 | None:intergenic | 30.0% |
| TAAAAAGCTCAACAAATCAC+AGG | + | chr4_2:55260522-55260541 | None:intergenic | 30.0% | |
| ! | CAAAAGATTTTGTTGCTACT+AGG | - | chr4_2:55260544-55260563 | Msa0608260:intron | 30.0% |
| ! | CATGGAAACTTGTTTATCTT+AGG | - | chr4_2:55260947-55260966 | Msa0608260:intron | 30.0% |
| CTGTTGTCTGTTTGTATATT+AGG | - | chr4_2:55260971-55260990 | Msa0608260:intron | 30.0% | |
| !! | ATTACTTTTCTACTTTCAGC+AGG | - | chr4_2:55261014-55261033 | Msa0608260:intron | 30.0% |
| TATGCTCAATATTTACATGG+TGG | - | chr4_2:55261078-55261097 | Msa0608260:intron | 30.0% | |
| GCTTGGACTATTAATAATGT+AGG | - | chr4_2:55261152-55261171 | Msa0608260:CDS | 30.0% | |
| AAGGAAATTGCCCAATATAT+GGG | + | chr4_2:55261326-55261345 | None:intergenic | 30.0% | |
| AAAGGAAATTGCCCAATATA+TGG | + | chr4_2:55261327-55261346 | None:intergenic | 30.0% | |
| AGATTATGTTTGTATGGAGT+TGG | - | chr4_2:55261370-55261389 | Msa0608260:CDS | 30.0% | |
| !!! | AAGTGTAGGGTTTTTTGGTT+TGG | + | chr4_2:55258984-55259003 | None:intergenic | 35.0% |
| !!! | GAGATAAGTGTAGGGTTTTT+TGG | + | chr4_2:55258989-55259008 | None:intergenic | 35.0% |
| !!! | GGAGTTTTGAGATAAGTGTA+GGG | + | chr4_2:55258997-55259016 | None:intergenic | 35.0% |
| GATACACGCATTATCATGAA+CGG | - | chr4_2:55259182-55259201 | Msa0608260:three_prime_UTR | 35.0% | |
| ! | AAGAGTAAGTCTCGTGTTTT+GGG | + | chr4_2:55259735-55259754 | None:intergenic | 35.0% |
| CATTGGCACTCTTAATACTA+GGG | + | chr4_2:55259785-55259804 | None:intergenic | 35.0% | |
| ACATTGGCACTCTTAATACT+AGG | + | chr4_2:55259786-55259805 | None:intergenic | 35.0% | |
| GCTCTTCTTAGCAATAACAT+TGG | + | chr4_2:55259802-55259821 | None:intergenic | 35.0% | |
| ATGTTATTGCTAAGAAGAGC+TGG | - | chr4_2:55259802-55259821 | Msa0608260:intron | 35.0% | |
| ! | GTTGCAATGACTTAGGATTT+TGG | + | chr4_2:55259855-55259874 | None:intergenic | 35.0% |
| GTAAAAGGTTGCAATGACTT+AGG | + | chr4_2:55259862-55259881 | None:intergenic | 35.0% | |
| !!! | GGGGTTTAGAAAGTATTTTG+CGG | - | chr4_2:55259982-55260001 | Msa0608260:intron | 35.0% |
| GGTCAGGAAATAAAAAACAG+AGG | + | chr4_2:55260093-55260112 | None:intergenic | 35.0% | |
| ! | ACATATGGTGATGATACACT+CGG | - | chr4_2:55260226-55260245 | Msa0608260:intron | 35.0% |
| GTACAGGATTACGACATTTA+TGG | + | chr4_2:55260325-55260344 | None:intergenic | 35.0% | |
| AATCCTGTACCAAAGATTGA+TGG | - | chr4_2:55260335-55260354 | Msa0608260:three_prime_UTR | 35.0% | |
| AATCCATCAATCTTTGGTAC+AGG | + | chr4_2:55260341-55260360 | None:intergenic | 35.0% | |
| CTGATCTTCAAATAGTCTCT+AGG | + | chr4_2:55260474-55260493 | None:intergenic | 35.0% | |
| CTAGAGACTATTTGAAGATC+AGG | - | chr4_2:55260472-55260491 | Msa0608260:intron | 35.0% | |
| ATTTGAAGATCAGGAAGCAA+AGG | - | chr4_2:55260481-55260500 | Msa0608260:intron | 35.0% | |
| AATTGCAGCACACAGATATA+TGG | + | chr4_2:55260776-55260795 | None:intergenic | 35.0% | |
| TTCAGATAGTGACATTCTGT+AGG | - | chr4_2:55260891-55260910 | Msa0608260:intron | 35.0% | |
| ! | TAATTTGAGACTTGCATGCT+TGG | - | chr4_2:55261135-55261154 | Msa0608260:CDS | 35.0% |
| !! | AAAGCCAAAGCTGATTTTAG+GGG | + | chr4_2:55261230-55261249 | None:intergenic | 35.0% |
| !! | GAAAGCCAAAGCTGATTTTA+GGG | + | chr4_2:55261231-55261250 | None:intergenic | 35.0% |
| !! | TGAAAGCCAAAGCTGATTTT+AGG | + | chr4_2:55261232-55261251 | None:intergenic | 35.0% |
| ACGGCAGATACAACAAATTA+TGG | + | chr4_2:55261280-55261299 | None:intergenic | 35.0% | |
| !! | TAATTTGTTGTATCTGCCGT+TGG | - | chr4_2:55261280-55261299 | Msa0608260:intron | 35.0% |
| TTATGTTTGTATGGAGTTGG+CGG | - | chr4_2:55261373-55261392 | Msa0608260:CDS | 35.0% | |
| !!! | GGTTTTTTGGTTTGGTTCTG+TGG | + | chr4_2:55258976-55258995 | None:intergenic | 40.0% |
| !!! | CGGAGTTTTGAGATAAGTGT+AGG | + | chr4_2:55258998-55259017 | None:intergenic | 40.0% |
| CAAAACTCCGACAACTGAAA+TGG | - | chr4_2:55259008-55259027 | Msa0608260:three_prime_UTR | 40.0% | |
| AGATGATCGGAACATTGATC+TGG | + | chr4_2:55259046-55259065 | None:intergenic | 40.0% | |
| ATCTGGTTGCAGAAGATGAT+CGG | + | chr4_2:55259059-55259078 | None:intergenic | 40.0% | |
| TTATTGGATGCCATTCGGAA+CGG | + | chr4_2:55259123-55259142 | None:intergenic | 40.0% | |
| GAGGTTTATTGGATGCCATT+CGG | + | chr4_2:55259128-55259147 | None:intergenic | 40.0% | |
| TACCTGAACATGGATGTTGA+TGG | + | chr4_2:55259156-55259175 | None:intergenic | 40.0% | |
| TAGCATTAGGTGCACTTTGA+AGG | - | chr4_2:55259528-55259547 | Msa0608260:intron | 40.0% | |
| CATGAGTAGTCGTGTTTGTA+AGG | + | chr4_2:55259660-55259679 | None:intergenic | 40.0% | |
| ! | CAAGAGTAAGTCTCGTGTTT+TGG | + | chr4_2:55259736-55259755 | None:intergenic | 40.0% |
| GGAATGCACTCAAGAGTAAA+AGG | + | chr4_2:55259877-55259896 | None:intergenic | 40.0% | |
| TTAGGTAGCTAAGCATCTCT+AGG | - | chr4_2:55260130-55260149 | Msa0608260:intron | 40.0% | |
| CACTGTAATGCATGCAAATC+AGG | + | chr4_2:55260804-55260823 | None:intergenic | 40.0% | |
| ATGTCCCCTAAAATCAGCTT+TGG | - | chr4_2:55261223-55261242 | Msa0608260:intron | 40.0% | |
| AAGCCGTCTTCTTATACCAA+CGG | + | chr4_2:55261299-55261318 | None:intergenic | 40.0% | |
| GAAATTGCCCAATATATGGG+TGG | + | chr4_2:55261323-55261342 | None:intergenic | 40.0% | |
| TGCGCGAGATTATGTTTGTA+TGG | - | chr4_2:55261364-55261383 | Msa0608260:CDS | 40.0% | |
| GTGGAAGCCATTTCAGTTGT+CGG | + | chr4_2:55259018-55259037 | None:intergenic | 45.0% | |
| TGATCGGAACATTGATCTGG+CGG | + | chr4_2:55259043-55259062 | None:intergenic | 45.0% | |
| ! | TGATGGCGAGAGAGGTTTAT+TGG | + | chr4_2:55259139-55259158 | None:intergenic | 45.0% |
| GAAGCAGTAACAGTGTGGTA+AGG | + | chr4_2:55259305-55259324 | None:intergenic | 45.0% | |
| ! | AACTACGCTTGGCTTTCAGA+AGG | - | chr4_2:55259362-55259381 | Msa0608260:intron | 45.0% |
| GTAGTCGTGTTTGTAAGGTG+AGG | + | chr4_2:55259655-55259674 | None:intergenic | 45.0% | |
| TCCAAGATTCCTCCATTGAG+TGG | - | chr4_2:55259695-55259714 | Msa0608260:intron | 45.0% | |
| CCAAGATTCCTCCATTGAGT+GGG | - | chr4_2:55259696-55259715 | Msa0608260:intron | 45.0% | |
| CAAGATTCCTCCATTGAGTG+GGG | - | chr4_2:55259697-55259716 | Msa0608260:intron | 45.0% | |
| CATGTGATAACCCCACTCAA+TGG | + | chr4_2:55259710-55259729 | None:intergenic | 45.0% | |
| CACTCTTAATACTAGGGTGC+TGG | + | chr4_2:55259779-55259798 | None:intergenic | 45.0% | |
| ! | CTGGCTTGTGCTTACGAATA+TGG | + | chr4_2:55260274-55260293 | None:intergenic | 45.0% |
| GTGAGGAGACAAGTGTAGTA+GGG | + | chr4_2:55260372-55260391 | None:intergenic | 45.0% | |
| TGAAGATCAGGAAGCAAAGG+TGG | - | chr4_2:55260484-55260503 | Msa0608260:intron | 45.0% | |
| CTGCCGTTGGTATAAGAAGA+CGG | - | chr4_2:55261293-55261312 | Msa0608260:intron | 45.0% | |
| !! | ATGGATGTTGATGGCGAGAG+AGG | + | chr4_2:55259147-55259166 | None:intergenic | 50.0% |
| CGCCATCAACATCCATGTTC+AGG | - | chr4_2:55259151-55259170 | Msa0608260:three_prime_UTR | 50.0% | |
| AGCGTAGTTGCGGCTTGAAA+GGG | + | chr4_2:55259351-55259370 | None:intergenic | 50.0% | |
| AAGCGTAGTTGCGGCTTGAA+AGG | + | chr4_2:55259352-55259371 | None:intergenic | 50.0% | |
| TTTCAAGCCGCAACTACGCT+TGG | - | chr4_2:55259351-55259370 | Msa0608260:intron | 50.0% | |
| CTGAAAGCCAAGCGTAGTTG+CGG | + | chr4_2:55259361-55259380 | None:intergenic | 50.0% | |
| CCCACTCAATGGAGGAATCT+TGG | + | chr4_2:55259699-55259718 | None:intergenic | 50.0% | |
| GTGATAACCCCACTCAATGG+AGG | + | chr4_2:55259707-55259726 | None:intergenic | 50.0% | |
| TGTGGTGTGCTCGTTCTCTT+TGG | - | chr4_2:55260054-55260073 | Msa0608260:intron | 50.0% | |
| GTGGTGTGCTCGTTCTCTTT+GGG | - | chr4_2:55260055-55260074 | Msa0608260:intron | 50.0% | |
| GGTGAGGAGACAAGTGTAGT+AGG | + | chr4_2:55260373-55260392 | None:intergenic | 50.0% | |
| !! | GTTATTTTACGGAGGGGGTG+AGG | + | chr4_2:55260389-55260408 | None:intergenic | 50.0% |
| ATGAGTTCACTGTGCGCTCT+CGG | - | chr4_2:55260826-55260845 | Msa0608260:intron | 50.0% | |
| ACGGCTTGCCACCCATATAT+TGG | - | chr4_2:55261312-55261331 | Msa0608260:intron | 50.0% | |
| CGGCTTGCCACCCATATATT+GGG | - | chr4_2:55261313-55261332 | Msa0608260:intron | 50.0% | |
| TCGGAACATTGATCTGGCGG+CGG | + | chr4_2:55259040-55259059 | None:intergenic | 55.0% | |
| ! | GTTTAGCTTCCGAGGCGACA+CGG | + | chr4_2:55259089-55259108 | None:intergenic | 55.0% |
| ! | ACGAGCTGGTTTAGCTTCCG+AGG | + | chr4_2:55259097-55259116 | None:intergenic | 55.0% |
| ATTCGGAACGGAGAACGAGC+TGG | + | chr4_2:55259111-55259130 | None:intergenic | 55.0% | |
| AGCTCGTTCTCCGTTCCGAA+TGG | - | chr4_2:55259110-55259129 | Msa0608260:three_prime_UTR | 55.0% | |
| GCGCAGAAGCAGTAACAGTG+TGG | + | chr4_2:55259310-55259329 | None:intergenic | 55.0% | |
| GAACATTGATCTGGCGGCGG+TGG | + | chr4_2:55259037-55259056 | None:intergenic | 60.0% | |
| ATCAGCCTTCCGTGTCGCCT+CGG | - | chr4_2:55259077-55259096 | Msa0608260:three_prime_UTR | 60.0% | |
| GGCGACACGGAAGGCTGATC+TGG | + | chr4_2:55259076-55259095 | None:intergenic | 65.0% | |
| AGCTTCCGAGGCGACACGGA+AGG | + | chr4_2:55259085-55259104 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55258968 | 55261530 | 55258968 | ID=Msa0608260;Name=Msa0608260 |
| chr4_2 | mRNA | 55258968 | 55261530 | 55258968 | ID=Msa0608260-mRNA-1;Parent=Msa0608260;Name=Msa0608260-mRNA-1;_AED=0.27;_eAED=0.27;_QI=59|1|1|1|0.25|0.4|5|422|91 |
| chr4_2 | exon | 55258968 | 55259282 | 55258968 | ID=Msa0608260-mRNA-1:exon:14048;Parent=Msa0608260-mRNA-1 |
| chr4_2 | exon | 55259402 | 55259462 | 55259402 | ID=Msa0608260-mRNA-1:exon:14047;Parent=Msa0608260-mRNA-1 |
| chr4_2 | exon | 55260311 | 55260364 | 55260311 | ID=Msa0608260-mRNA-1:exon:14046;Parent=Msa0608260-mRNA-1 |
| chr4_2 | exon | 55261115 | 55261236 | 55261115 | ID=Msa0608260-mRNA-1:exon:14045;Parent=Msa0608260-mRNA-1 |
| chr4_2 | exon | 55261326 | 55261530 | 55261326 | ID=Msa0608260-mRNA-1:exon:14044;Parent=Msa0608260-mRNA-1 |
| chr4_2 | five_prime_UTR | 55261472 | 55261530 | 55261472 | ID=Msa0608260-mRNA-1:five_prime_utr;Parent=Msa0608260-mRNA-1 |
| chr4_2 | CDS | 55261326 | 55261471 | 55261326 | ID=Msa0608260-mRNA-1:cds;Parent=Msa0608260-mRNA-1 |
| chr4_2 | CDS | 55261115 | 55261236 | 55261115 | ID=Msa0608260-mRNA-1:cds;Parent=Msa0608260-mRNA-1 |
| chr4_2 | CDS | 55260357 | 55260364 | 55260357 | ID=Msa0608260-mRNA-1:cds;Parent=Msa0608260-mRNA-1 |
| chr4_2 | three_prime_UTR | 55260311 | 55260356 | 55260311 | ID=Msa0608260-mRNA-1:three_prime_utr;Parent=Msa0608260-mRNA-1 |
| chr4_2 | three_prime_UTR | 55259402 | 55259462 | 55259402 | ID=Msa0608260-mRNA-1:three_prime_utr;Parent=Msa0608260-mRNA-1 |
| chr4_2 | three_prime_UTR | 55258968 | 55259282 | 55258968 | ID=Msa0608260-mRNA-1:three_prime_utr;Parent=Msa0608260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
