Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194940 | XP_003593950.2 | 99.338 | 151 | 1 | 0 | 1 | 151 | 1 | 151 | 9.63e-104 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194940 | sp|O22584|RS14_LUPLU | 95.652 | 138 | 6 | 0 | 3 | 140 | 2 | 139 | 1.57e-92 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194940 | G7IPY3 | 99.338 | 151 | 1 | 0 | 1 | 151 | 1 | 151 | 4.60e-104 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0194940 | 0.854082 | 1.559818e-61 | -8.615850e-47 |
| Msa0003330 | Msa0194940 | 0.816758 | 4.688810e-52 | -8.615850e-47 |
| Msa0021320 | Msa0194940 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0027590 | Msa0194940 | 0.878625 | 2.413969e-69 | -8.615850e-47 |
| Msa0032780 | Msa0194940 | 0.853389 | 2.468004e-61 | -8.615850e-47 |
| Msa0040220 | Msa0194940 | 0.885507 | 7.664302e-72 | -8.615850e-47 |
| Msa0042480 | Msa0194940 | 0.811437 | 7.005734e-51 | -8.615850e-47 |
| Msa0044890 | Msa0194940 | 0.819157 | 1.345939e-52 | -8.615850e-47 |
| Msa0047650 | Msa0194940 | 0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa0065110 | Msa0194940 | 0.801552 | 8.530730e-49 | -8.615850e-47 |
| Msa0068970 | Msa0194940 | 0.832345 | 9.969776e-56 | -8.615850e-47 |
| Msa0072570 | Msa0194940 | 0.831097 | 2.025005e-55 | -8.615850e-47 |
| Msa0075350 | Msa0194940 | 0.850070 | 2.152776e-60 | -8.615850e-47 |
| Msa0079590 | Msa0194940 | 0.825294 | 5.068939e-54 | -8.615850e-47 |
| Msa0087910 | Msa0194940 | 0.908500 | 1.596736e-81 | -8.615850e-47 |
| Msa0114570 | Msa0194940 | 0.855029 | 8.297364e-62 | -8.615850e-47 |
| Msa0114600 | Msa0194940 | 0.866256 | 3.257230e-65 | -8.615850e-47 |
| Msa0128330 | Msa0194940 | 0.899459 | 1.941373e-77 | -8.615850e-47 |
| Msa0128750 | Msa0194940 | 0.853610 | 2.133304e-61 | -8.615850e-47 |
| Msa0132460 | Msa0194940 | 0.861008 | 1.387437e-63 | -8.615850e-47 |
| Msa0134580 | Msa0194940 | 0.903779 | 2.437687e-79 | -8.615850e-47 |
| Msa0167860 | Msa0194940 | 0.899140 | 2.660137e-77 | -8.615850e-47 |
| Msa0172900 | Msa0194940 | 0.817566 | 3.085081e-52 | -8.615850e-47 |
| Msa0172930 | Msa0194940 | 0.828458 | 8.889759e-55 | -8.615850e-47 |
| Msa0174580 | Msa0194940 | 0.896779 | 2.658674e-76 | -8.615850e-47 |
| Msa0182050 | Msa0194940 | 0.861365 | 1.079686e-63 | -8.615850e-47 |
| Msa0182100 | Msa0194940 | 0.833975 | 3.916436e-56 | -8.615850e-47 |
| Msa0183090 | Msa0194940 | 0.806901 | 6.568431e-50 | -8.615850e-47 |
| Msa0186740 | Msa0194940 | 0.869130 | 3.899263e-66 | -8.615850e-47 |
| Msa0187810 | Msa0194940 | 0.829578 | 4.760064e-55 | -8.615850e-47 |
| Msa0191450 | Msa0194940 | 0.903615 | 2.888431e-79 | -8.615850e-47 |
| Msa0191550 | Msa0194940 | 0.914406 | 1.990095e-84 | -8.615850e-47 |
| Msa0192300 | Msa0194940 | 0.835517 | 1.602157e-56 | -8.615850e-47 |
| Msa0192750 | Msa0194940 | 0.813547 | 2.421564e-51 | -8.615850e-47 |
| Msa0194940 | Msa0210330 | 0.830444 | 2.926844e-55 | -8.615850e-47 |
| Msa0194940 | Msa0210360 | 0.855436 | 6.318213e-62 | -8.615850e-47 |
| Msa0194940 | Msa0222730 | 0.876150 | 1.755001e-68 | -8.615850e-47 |
| Msa0194940 | Msa0235050 | 0.845536 | 3.819291e-59 | -8.615850e-47 |
| Msa0194940 | Msa0239420 | 0.801801 | 7.587250e-49 | -8.615850e-47 |
| Msa0194940 | Msa0270160 | 0.802123 | 6.513733e-49 | -8.615850e-47 |
| Msa0194940 | Msa0277600 | 0.888751 | 4.471589e-73 | -8.615850e-47 |
| Msa0194940 | Msa0281330 | 0.866729 | 2.303750e-65 | -8.615850e-47 |
| Msa0194940 | Msa0281370 | 0.874622 | 5.847051e-68 | -8.615850e-47 |
| Msa0194940 | Msa0297830 | 0.828312 | 9.641447e-55 | -8.615850e-47 |
| Msa0194940 | Msa0301220 | 0.832899 | 7.263733e-56 | -8.615850e-47 |
| Msa0194940 | Msa0301250 | 0.834519 | 2.860572e-56 | -8.615850e-47 |
| Msa0194940 | Msa0312210 | 0.874705 | 5.478670e-68 | -8.615850e-47 |
| Msa0194940 | Msa0313060 | 0.864455 | 1.201392e-64 | -8.615850e-47 |
| Msa0194940 | Msa0313520 | 0.856217 | 3.736022e-62 | -8.615850e-47 |
| Msa0194940 | Msa0315430 | 0.942299 | 9.185918e-102 | -8.615850e-47 |
| Msa0194940 | Msa0335840 | 0.840703 | 7.413296e-58 | -8.615850e-47 |
| Msa0194940 | Msa0340560 | 0.823451 | 1.375088e-53 | -8.615850e-47 |
| Msa0194940 | Msa0341880 | 0.817812 | 2.715622e-52 | -8.615850e-47 |
| Msa0194940 | Msa0342850 | 0.841346 | 5.023629e-58 | -8.615850e-47 |
| Msa0194940 | Msa0369410 | 0.851514 | 8.447283e-61 | -8.615850e-47 |
| Msa0194940 | Msa0371490 | 0.830318 | 3.141207e-55 | -8.615850e-47 |
| Msa0194940 | Msa0377520 | 0.834753 | 2.497789e-56 | -8.615850e-47 |
| Msa0194940 | Msa0382960 | 0.835771 | 1.382378e-56 | -8.615850e-47 |
| Msa0194940 | Msa0419710 | 0.855081 | 8.015635e-62 | -8.615850e-47 |
| Msa0194940 | Msa0426090 | 0.912359 | 2.130991e-83 | -8.615850e-47 |
| Msa0194940 | Msa0426250 | 0.934855 | 2.114224e-96 | -8.615850e-47 |
| Msa0194940 | Msa0432750 | 0.831332 | 1.772309e-55 | -8.615850e-47 |
| Msa0194940 | Msa0436750 | 0.824219 | 9.088216e-54 | -8.615850e-47 |
| Msa0194940 | Msa0438960 | 0.853809 | 1.869568e-61 | -8.615850e-47 |
| Msa0194940 | Msa0450150 | 0.843462 | 1.380582e-58 | -8.615850e-47 |
| Msa0194940 | Msa0463520 | 0.824981 | 6.012110e-54 | -8.615850e-47 |
| Msa0194940 | Msa0468440 | 0.805118 | 1.557697e-49 | -8.615850e-47 |
| Msa0194940 | Msa0471880 | 0.871161 | 8.435281e-67 | -8.615850e-47 |
| Msa0194940 | Msa0472480 | 0.901517 | 2.474162e-78 | -8.615850e-47 |
| Msa0194940 | Msa0473570 | 0.829373 | 5.339491e-55 | -8.615850e-47 |
| Msa0194940 | Msa0475810 | 0.877877 | 4.417137e-69 | -8.615850e-47 |
| Msa0194940 | Msa0479980 | 0.826553 | 2.547353e-54 | -8.615850e-47 |
| Msa0194940 | Msa0481520 | 0.905712 | 3.212229e-80 | -8.615850e-47 |
| Msa0194940 | Msa0481850 | 0.852816 | 3.601003e-61 | -8.615850e-47 |
| Msa0194940 | Msa0482560 | 0.812464 | 4.183695e-51 | -8.615850e-47 |
| Msa0194940 | Msa0484730 | 0.843252 | 1.571070e-58 | -8.615850e-47 |
| Msa0194940 | Msa0486070 | 0.811618 | 6.398740e-51 | -8.615850e-47 |
| Msa0194940 | Msa0517480 | 0.836206 | 1.071684e-56 | -8.615850e-47 |
| Msa0194940 | Msa0529900 | 0.918177 | 2.149360e-86 | -8.615850e-47 |
| Msa0194940 | Msa0540480 | 0.801858 | 7.382243e-49 | -8.615850e-47 |
| Msa0194940 | Msa0547920 | 0.858583 | 7.456569e-63 | -8.615850e-47 |
| Msa0194940 | Msa0550420 | 0.870690 | 1.205771e-66 | -8.615850e-47 |
| Msa0194940 | Msa0573550 | 0.898203 | 6.676439e-77 | -8.615850e-47 |
| Msa0194940 | Msa0574780 | 0.826781 | 2.247446e-54 | -8.615850e-47 |
| Msa0194940 | Msa0579830 | 0.868621 | 5.698625e-66 | -8.615850e-47 |
| Msa0194940 | Msa0582070 | 0.823026 | 1.728382e-53 | -8.615850e-47 |
| Msa0194940 | Msa0584030 | 0.815483 | 9.032640e-52 | -8.615850e-47 |
| Msa0194940 | Msa0591050 | 0.827410 | 1.588541e-54 | -8.615850e-47 |
| Msa0194940 | Msa0597240 | 0.842643 | 2.280768e-58 | -8.615850e-47 |
| Msa0194940 | Msa0602900 | 0.837860 | 4.050801e-57 | -8.615850e-47 |
| Msa0194940 | Msa0605890 | 0.885695 | 6.510951e-72 | -8.615850e-47 |
| Msa0194940 | Msa0619230 | 0.843798 | 1.122389e-58 | -8.615850e-47 |
| Msa0194940 | Msa0622230 | 0.856725 | 2.648465e-62 | -8.615850e-47 |
| Msa0194940 | Msa0643960 | 0.843023 | 1.808327e-58 | -8.615850e-47 |
| Msa0194940 | Msa0649890 | 0.867422 | 1.384755e-65 | -8.615850e-47 |
| Msa0194940 | Msa0653060 | 0.879892 | 8.596785e-70 | -8.615850e-47 |
| Msa0194940 | Msa0681220 | 0.827736 | 1.326988e-54 | -8.615850e-47 |
| Msa0194940 | Msa0686550 | 0.876316 | 1.538097e-68 | -8.615850e-47 |
| Msa0194940 | Msa0691330 | 0.800598 | 1.337121e-48 | -8.615850e-47 |
| Msa0194940 | Msa0694400 | 0.869501 | 2.952689e-66 | -8.615850e-47 |
| Msa0194940 | Msa0704860 | 0.860194 | 2.448109e-63 | -8.615850e-47 |
| Msa0194940 | Msa0705800 | 0.845944 | 2.959573e-59 | -8.615850e-47 |
| Msa0194940 | Msa0708630 | 0.860950 | 1.444861e-63 | -8.615850e-47 |
| Msa0194940 | Msa0712610 | 0.812366 | 4.395630e-51 | -8.615850e-47 |
| Msa0194940 | Msa0717380 | 0.816133 | 6.469956e-52 | -8.615850e-47 |
| Msa0194940 | Msa0718560 | 0.804906 | 1.724778e-49 | -8.615850e-47 |
| Msa0194940 | Msa0748350 | 0.865714 | 4.832361e-65 | -8.615850e-47 |
| Msa0194940 | Msa0749000 | 0.838514 | 2.749244e-57 | -8.615850e-47 |
| Msa0194940 | Msa0758420 | 0.817617 | 3.005452e-52 | -8.615850e-47 |
| Msa0194940 | Msa0781080 | 0.817155 | 3.819232e-52 | -8.615850e-47 |
| Msa0194940 | Msa0788380 | 0.881353 | 2.576133e-70 | -8.615850e-47 |
| Msa0194940 | Msa0790450 | 0.841720 | 4.003587e-58 | -8.615850e-47 |
| Msa0194940 | Msa0796490 | 0.843958 | 1.016947e-58 | -8.615850e-47 |
| Msa0194940 | Msa0799830 | 0.835220 | 1.904594e-56 | -8.615850e-47 |
| Msa0194940 | Msa0822580 | 0.837185 | 6.033906e-57 | -8.615850e-47 |
| Msa0194940 | Msa0827380 | 0.806536 | 7.843170e-50 | -8.615850e-47 |
| Msa0194940 | Msa0834220 | 0.811613 | 6.414136e-51 | -8.615850e-47 |
| Msa0194940 | Msa0835190 | 0.816485 | 5.398930e-52 | -8.615850e-47 |
| Msa0194940 | Msa0838070 | 0.852583 | 4.196983e-61 | -8.615850e-47 |
| Msa0194940 | Msa0861320 | 0.858525 | 7.759330e-63 | -8.615850e-47 |
| Msa0194940 | Msa0902220 | 0.827794 | 1.284626e-54 | -8.615850e-47 |
| Msa0194940 | Msa0915540 | 0.802619 | 5.147788e-49 | -8.615850e-47 |
| Msa0194940 | Msa0927910 | 0.832172 | 1.099853e-55 | -8.615850e-47 |
| Msa0194940 | Msa0929700 | 0.885061 | 1.124952e-71 | -8.615850e-47 |
| Msa0194940 | Msa0930100 | 0.821223 | 4.527003e-53 | -8.615850e-47 |
| Msa0194940 | Msa0930890 | 0.839666 | 1.382337e-57 | -8.615850e-47 |
| Msa0194940 | Msa0978470 | 0.812649 | 3.811357e-51 | -8.615850e-47 |
| Msa0194940 | Msa1025200 | 0.819205 | 1.312354e-52 | -8.615850e-47 |
| Msa0194940 | Msa1025220 | 0.805226 | 1.478899e-49 | -8.615850e-47 |
| Msa0194940 | Msa1037290 | 0.898318 | 5.968614e-77 | -8.615850e-47 |
| Msa0194940 | Msa1040160 | 0.882228 | 1.241895e-70 | -8.615850e-47 |
| Msa0194940 | Msa1041680 | 0.860159 | 2.508908e-63 | -8.615850e-47 |
| Msa0194940 | Msa1042100 | 0.800382 | 1.479302e-48 | -8.615850e-47 |
| Msa0194940 | Msa1047020 | 0.800459 | 1.426946e-48 | -8.615850e-47 |
| Msa0194940 | Msa1050100 | 0.860108 | 2.598258e-63 | -8.615850e-47 |
| Msa0194940 | Msa1054280 | 0.803517 | 3.356728e-49 | -8.615850e-47 |
| Msa0194940 | Msa1078870 | 0.882921 | 6.942615e-71 | -8.615850e-47 |
| Msa0194940 | Msa1078980 | 0.881119 | 3.128603e-70 | -8.615850e-47 |
| Msa0194940 | Msa1079920 | 0.816224 | 6.174976e-52 | -8.615850e-47 |
| Msa0194940 | Msa1080350 | 0.845581 | 3.715644e-59 | -8.615850e-47 |
| Msa0194940 | Msa1082170 | 0.842874 | 1.980736e-58 | -8.615850e-47 |
| Msa0194940 | Msa1083370 | 0.875087 | 4.061335e-68 | -8.615850e-47 |
| Msa0194940 | Msa1096900 | 0.831310 | 1.795210e-55 | -8.615850e-47 |
| Msa0194940 | Msa1109310 | 0.825376 | 4.849278e-54 | -8.615850e-47 |
| Msa0194940 | Msa1116940 | 0.815507 | 8.924254e-52 | -8.615850e-47 |
| Msa0194940 | Msa1124850 | 0.852855 | 3.509673e-61 | -8.615850e-47 |
| Msa0194940 | Msa1125860 | 0.836397 | 9.587709e-57 | -8.615850e-47 |
| Msa0194940 | Msa1126060 | 0.838481 | 2.803262e-57 | -8.615850e-47 |
| Msa0194940 | Msa1126520 | 0.877755 | 4.873360e-69 | -8.615850e-47 |
| Msa0194940 | Msa1126690 | 0.852759 | 3.737774e-61 | -8.615850e-47 |
| Msa0194940 | Msa1128120 | 0.832082 | 1.158129e-55 | -8.615850e-47 |
| Msa0194940 | Msa1147670 | 0.826378 | 2.804220e-54 | -8.615850e-47 |
| Msa0194940 | Msa1156830 | 0.812430 | 4.255889e-51 | -8.615850e-47 |
| Msa0194940 | Msa1164150 | 0.903980 | 1.977462e-79 | -8.615850e-47 |
| Msa0194940 | Msa1165640 | 0.858145 | 1.007198e-62 | -8.615850e-47 |
| Msa0194940 | Msa1166570 | 0.861626 | 8.989163e-64 | -8.615850e-47 |
| Msa0194940 | Msa1167540 | 0.875334 | 3.344605e-68 | -8.615850e-47 |
| Msa0194940 | Msa1167550 | 0.801904 | 7.225628e-49 | -8.615850e-47 |
| Msa0194940 | Msa1169180 | 0.886566 | 3.060145e-72 | -8.615850e-47 |
| Msa0194940 | Msa1180000 | 0.834230 | 3.379398e-56 | -8.615850e-47 |
| Msa0194940 | Msa1186030 | 0.872984 | 2.089106e-67 | -8.615850e-47 |
| Msa0194940 | Msa1203560 | 0.849857 | 2.470818e-60 | -8.615850e-47 |
| Msa0194940 | Msa1206240 | 0.811709 | 6.113944e-51 | -8.615850e-47 |
| Msa0194940 | Msa1208330 | 0.862728 | 4.126038e-64 | -8.615850e-47 |
| Msa0194940 | Msa1218170 | 0.805042 | 1.615448e-49 | -8.615850e-47 |
| Msa0194940 | Msa1227080 | 0.804726 | 1.880858e-49 | -8.615850e-47 |
| Msa0194940 | Msa1237040 | 0.851447 | 8.821163e-61 | -8.615850e-47 |
| Msa0194940 | Msa1240270 | 0.846509 | 2.077577e-59 | -8.615850e-47 |
| Msa0194940 | Msa1255830 | 0.802512 | 5.415758e-49 | -8.615850e-47 |
| Msa0194940 | Msa1255850 | 0.813377 | 2.639967e-51 | -8.615850e-47 |
| Msa0194940 | Msa1256840 | 0.824045 | 9.983666e-54 | -8.615850e-47 |
| Msa0194940 | Msa1258540 | 0.886320 | 3.789195e-72 | -8.615850e-47 |
| Msa0194940 | Msa1270640 | 0.832580 | 8.715023e-56 | -8.615850e-47 |
| Msa0194940 | Msa1270710 | 0.827332 | 1.658507e-54 | -8.615850e-47 |
| Msa0194940 | Msa1278130 | 0.854220 | 1.422643e-61 | -8.615850e-47 |
| Msa0194940 | Msa1284060 | 0.807258 | 5.519513e-50 | -8.615850e-47 |
| Msa0194940 | Msa1295150 | 0.872388 | 3.304620e-67 | -8.615850e-47 |
| Msa0194940 | Msa1295170 | 0.834288 | 3.268210e-56 | -8.615850e-47 |
| Msa0194940 | Msa1311400 | 0.921168 | 5.054739e-88 | -8.615850e-47 |
| Msa0194940 | Msa1317390 | 0.821012 | 5.061407e-53 | -8.615850e-47 |
| Msa0194940 | Msa1330730 | 0.835351 | 1.764928e-56 | -8.615850e-47 |
| Msa0194940 | Msa1332250 | 0.868474 | 6.358645e-66 | -8.615850e-47 |
| Msa0194940 | Msa1341780 | 0.862534 | 4.734421e-64 | -8.615850e-47 |
| Msa0194940 | Msa1351020 | 0.877042 | 8.629859e-69 | -8.615850e-47 |
| Msa0194940 | Msa1351910 | 0.810801 | 9.623404e-51 | -8.615850e-47 |
| Msa0194940 | Msa1353300 | 0.820317 | 7.311397e-53 | -8.615850e-47 |
| Msa0194940 | Msa1356790 | 0.813186 | 2.907466e-51 | -8.615850e-47 |
| Msa0194940 | Msa1362210 | 0.819094 | 1.390927e-52 | -8.615850e-47 |
| Msa0194940 | Msa1363910 | 0.806065 | 9.856942e-50 | -8.615850e-47 |
| Msa0194940 | Msa1367540 | 0.843422 | 1.415222e-58 | -8.615850e-47 |
| Msa0194940 | Msa1368920 | 0.898476 | 5.109594e-77 | -8.615850e-47 |
| Msa0194940 | Msa1371410 | 0.834209 | 3.421429e-56 | -8.615850e-47 |
| Msa0194940 | Msa1374480 | 0.855243 | 7.189488e-62 | -8.615850e-47 |
| Msa0194940 | Msa1385480 | 0.858616 | 7.290641e-63 | -8.615850e-47 |
| Msa0194940 | Msa1390760 | 0.842041 | 3.293179e-58 | -8.615850e-47 |
| Msa0194940 | Msa1392590 | 0.816869 | 4.427889e-52 | -8.615850e-47 |
| Msa0194940 | Msa1397100 | 0.863788 | 1.937817e-64 | -8.615850e-47 |
| Msa0194940 | Msa1397660 | 0.828595 | 8.236348e-55 | -8.615850e-47 |
| Msa0194940 | Msa1403910 | 0.852243 | 5.245728e-61 | -8.615850e-47 |
| Msa0194940 | Msa1406080 | 0.802481 | 5.497757e-49 | -8.615850e-47 |
| Msa0194940 | Msa1415620 | 0.835138 | 1.997375e-56 | -8.615850e-47 |
| Msa0194940 | Msa1418770 | 0.843346 | 1.482505e-58 | -8.615850e-47 |
| Msa0194940 | Msa1424570 | 0.870522 | 1.369968e-66 | -8.615850e-47 |
| Msa0194940 | Msa1425070 | 0.804133 | 2.500330e-49 | -8.615850e-47 |
| Msa0194940 | Msa1426120 | 0.880054 | 7.524398e-70 | -8.615850e-47 |
| Msa0194940 | Msa1432310 | 0.841776 | 3.871014e-58 | -8.615850e-47 |
| Msa0194940 | Msa1446410 | 0.910416 | 1.919734e-82 | -8.615850e-47 |
| Msa0194940 | Msa1449160 | 0.831567 | 1.551934e-55 | -8.615850e-47 |
| Msa0194940 | Msa1450560 | 0.846136 | 2.625183e-59 | -8.615850e-47 |
| Msa0194940 | Msa1463570 | 0.900781 | 5.193278e-78 | -8.615850e-47 |
| Msa0194940 | Msa1465700 | 0.804240 | 2.375284e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194940 | MtrunA17_Chr2g0286111 | 99.338 | 151 | 1 | 0 | 1 | 151 | 1 | 151 | 8.86e-108 | 303 |
| Msa0194940 | MtrunA17_Chr4g0052211 | 99.338 | 151 | 1 | 0 | 1 | 151 | 1 | 151 | 4.50e-107 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194940 | AT3G11510.1 | 89.855 | 138 | 14 | 0 | 3 | 140 | 2 | 139 | 9.24e-90 | 258 |
| Msa0194940 | AT3G52580.1 | 89.130 | 138 | 15 | 0 | 3 | 140 | 2 | 139 | 2.86e-89 | 256 |
| Msa0194940 | AT2G36160.1 | 88.406 | 138 | 16 | 0 | 3 | 140 | 2 | 139 | 1.71e-88 | 254 |
| Msa0194940 | ATCG00750.1 | 33.613 | 119 | 70 | 2 | 29 | 147 | 28 | 137 | 7.66e-12 | 59.7 |
Find 72 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGAGATTTGAAGAAATT+AGG | 0.223530 | 2_1:+11497497 | None:intergenic |
| CTTCGTGCCCTTGCTCGTTC+TGG | 0.240493 | 2_1:-11495956 | Msa0194940:CDS |
| AGCACCAGGGCCAGGTGTTT+TGG | 0.248968 | 2_1:+11495988 | None:intergenic |
| ATTTGAAGAAATTAGGGTTT+TGG | 0.284679 | 2_1:+11497504 | None:intergenic |
| GCTCGTTCTGGAATGAAAAT+TGG | 0.299156 | 2_1:-11495944 | Msa0194940:CDS |
| ACAAGAAATACTTTATGTTT+AGG | 0.301414 | 2_1:+11494793 | None:intergenic |
| AATGTTACTGTCTCTTCCTT+TGG | 0.327634 | 2_1:+11497343 | None:intergenic |
| CAAAATGCCACAATTCTGTT+TGG | 0.341435 | 2_1:+11494848 | None:intergenic |
| TCCGAGATTTGAAGAAATTA+GGG | 0.346871 | 2_1:+11497498 | None:intergenic |
| CCCTTCTACCACTCTTTCTA+CGG | 0.354483 | 2_1:+11494933 | None:intergenic |
| AGAGAAATGGTGGCAGTGTT+TGG | 0.379820 | 2_1:+11497558 | None:intergenic |
| AGAAGGCTTTAGATACCTTA+TGG | 0.383435 | 2_1:-11494908 | Msa0194940:exon |
| AGAGTGGTAGAAGGGGTAGA+AGG | 0.383998 | 2_1:-11494925 | Msa0194940:CDS |
| AACATTGGGTCCAGCTGTTA+AGG | 0.388167 | 2_1:-11497326 | Msa0194940:CDS |
| AGTAAACAATAAAGCTAATT+CGG | 0.392151 | 2_1:+11494720 | None:intergenic |
| CGAAGAGCAGCTTGAGCACC+AGG | 0.399712 | 2_1:+11495974 | None:intergenic |
| AGTCGTCAAAGAGAAAGGTT+AGG | 0.404664 | 2_1:-11497369 | Msa0194940:CDS |
| TTGGATACTGATGCTGCTGC+TGG | 0.405674 | 2_1:+11497523 | None:intergenic |
| TTTAGATACCTTATGGTGTA+TGG | 0.408955 | 2_1:-11494901 | Msa0194940:exon |
| TGAACACAAATCTAATAATC+TGG | 0.411738 | 2_1:+11494675 | None:intergenic |
| TTCAGTGTTTGTCTGAGAAC+TGG | 0.418927 | 2_1:-11494698 | Msa0194940:three_prime_UTR |
| TGCCGCTATGCTTGCAGCAC+AGG | 0.424923 | 2_1:-11496321 | Msa0194940:CDS |
| TTTAGGTGGGATGAAAGTTA+AGG | 0.429174 | 2_1:-11496369 | Msa0194940:intron |
| GGAATGAAAATTGGTCGTAT+AGG | 0.435498 | 2_1:-11495935 | Msa0194940:intron |
| GCAGCTTGAGCACCAGGGCC+AGG | 0.435589 | 2_1:+11495980 | None:intergenic |
| CAGCATGTTACTGATTTATC+CGG | 0.442376 | 2_1:-11497152 | Msa0194940:CDS |
| ACCCTAATTTCTTCAAATCT+CGG | 0.444756 | 2_1:-11497499 | Msa0194940:five_prime_UTR |
| TGCTGCAAGCATAGCGGCAT+AGG | 0.460137 | 2_1:+11496325 | None:intergenic |
| GTGATAGTCGTCAAAGAGAA+AGG | 0.460831 | 2_1:-11497374 | Msa0194940:intron |
| CACATTAAGCTCCGTGCCAC+TGG | 0.465038 | 2_1:-11496022 | Msa0194940:CDS |
| GAACCTTGTCAAAAGAGAAA+TGG | 0.470046 | 2_1:+11497545 | None:intergenic |
| CCCGTAGAAAGAGTGGTAGA+AGG | 0.472164 | 2_1:-11494934 | Msa0194940:CDS |
| GAAACCCTTGTCCGTATCAC+TGG | 0.485388 | 2_1:-11497125 | Msa0194940:intron |
| ACCTTATGGTGTATGGAAGC+TGG | 0.488683 | 2_1:-11494894 | Msa0194940:three_prime_UTR |
| TTTGGTCTTGTTTCCACCAG+TGG | 0.501009 | 2_1:+11496006 | None:intergenic |
| TCCAGCTTCCATACACCATA+AGG | 0.503287 | 2_1:+11494893 | None:intergenic |
| ACGGGTGCTATCGGAAGGAA+TGG | 0.504362 | 2_1:+11494952 | None:intergenic |
| TGCCACAATTCTGTTTGGCA+TGG | 0.511987 | 2_1:+11494853 | None:intergenic |
| ACGGACAAGGGTTTCCCTGC+CGG | 0.518910 | 2_1:+11497133 | None:intergenic |
| TGTTCACCATCCTTAACAGC+TGG | 0.531081 | 2_1:+11497316 | None:intergenic |
| ACTCTTTCTACGGGTGCTAT+CGG | 0.532615 | 2_1:+11494943 | None:intergenic |
| CCGTAGAAAGAGTGGTAGAA+GGG | 0.533450 | 2_1:-11494933 | Msa0194940:CDS |
| AAAGGAAGAGACAGTAACAT+TGG | 0.536923 | 2_1:-11497341 | Msa0194940:CDS |
| CCTTCTACCACTCTTTCTAC+GGG | 0.539502 | 2_1:+11494934 | None:intergenic |
| CATATATATACTAACAATGA+AGG | 0.543037 | 2_1:+11497252 | None:intergenic |
| ATGTTACTGATTTATCCGGC+AGG | 0.543996 | 2_1:-11497148 | Msa0194940:CDS |
| GTCGTCAAAGAGAAAGGTTA+GGG | 0.549356 | 2_1:-11497368 | Msa0194940:CDS |
| AAGACCAAAACACCTGGCCC+TGG | 0.552706 | 2_1:-11495992 | Msa0194940:CDS |
| AAGGAAGAGACAGTAACATT+GGG | 0.554128 | 2_1:-11497340 | Msa0194940:CDS |
| TCTTGTTTCCACCAGTGGCA+CGG | 0.555351 | 2_1:+11496011 | None:intergenic |
| GAGAAAGGTTAGGGAGCCAA+AGG | 0.560093 | 2_1:-11497359 | Msa0194940:CDS |
| ACTCATACATACCAGTGATA+CGG | 0.570439 | 2_1:+11497114 | None:intergenic |
| ATTAAGCTCCGTGCCACTGG+TGG | 0.571382 | 2_1:-11496019 | Msa0194940:CDS |
| GCTGCAAGCATAGCGGCATA+GGG | 0.578463 | 2_1:+11496326 | None:intergenic |
| TTTCATTCCAGAACGAGCAA+GGG | 0.582609 | 2_1:+11495949 | None:intergenic |
| TTCCATGCCAAACAGAATTG+TGG | 0.582827 | 2_1:-11494855 | Msa0194940:three_prime_UTR |
| CGGGTGCTATCGGAAGGAAT+GGG | 0.585535 | 2_1:+11494953 | None:intergenic |
| GGAAACAAGACCAAAACACC+TGG | 0.596535 | 2_1:-11495998 | Msa0194940:CDS |
| TTTCTACGGGTGCTATCGGA+AGG | 0.607952 | 2_1:+11494947 | None:intergenic |
| ACATACCAGTGATACGGACA+AGG | 0.611084 | 2_1:+11497120 | None:intergenic |
| AGATACCATGGTTGAAAATG+CGG | 0.612440 | 2_1:+11497474 | None:intergenic |
| CCTTGTCAAAAGAGAAATGG+TGG | 0.615510 | 2_1:+11497548 | None:intergenic |
| TGTTACTGATTTATCCGGCA+GGG | 0.618792 | 2_1:-11497147 | Msa0194940:CDS |
| TTGGGTCCAGCTGTTAAGGA+TGG | 0.623308 | 2_1:-11497322 | Msa0194940:CDS |
| CGTAGAAAGAGTGGTAGAAG+GGG | 0.630512 | 2_1:-11494932 | Msa0194940:CDS |
| GATAGCACCCGTAGAAAGAG+TGG | 0.631829 | 2_1:-11494941 | Msa0194940:CDS |
| GGATGTTGCTACTAGATGCA+AGG | 0.645225 | 2_1:-11496300 | Msa0194940:intron |
| TTTAGGTGTTGAATCAAACA+TGG | 0.646359 | 2_1:+11494810 | None:intergenic |
| CATACCAGTGATACGGACAA+GGG | 0.691082 | 2_1:+11497121 | None:intergenic |
| ACGGAGCTTAATGTGAAGTG+CGG | 0.698863 | 2_1:+11496030 | None:intergenic |
| ATCCTGTGCTGCAAGCATAG+CGG | 0.706099 | 2_1:+11496319 | None:intergenic |
| GAAGAGCAGCTTGAGCACCA+GGG | 0.706692 | 2_1:+11495975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAAAATTACATATTTA+AGG | - | chr2_1:11495137-11495156 | Msa0194940:intron | 10.0% |
| !! | TAAAATTATACCAAATTTAA+TGG | - | chr2_1:11495426-11495445 | Msa0194940:intron | 10.0% |
| !! | AAAATTATACCAAATTTAAT+GGG | - | chr2_1:11495427-11495446 | Msa0194940:intron | 10.0% |
| !!! | TTATAAGTTTTTAATTTAGA+TGG | - | chr2_1:11495639-11495658 | Msa0194940:intron | 10.0% |
| !!! | AGCATTATTTTTTTTTTATA+TGG | - | chr2_1:11496040-11496059 | Msa0194940:CDS | 10.0% |
| !!! | GCATTATTTTTTTTTTATAT+GGG | - | chr2_1:11496041-11496060 | Msa0194940:CDS | 10.0% |
| !!! | CATTATTTTTTTTTTATATG+GGG | - | chr2_1:11496042-11496061 | Msa0194940:CDS | 10.0% |
| !!! | TTAGTTACTATCATATTTTA+AGG | - | chr2_1:11495105-11495124 | Msa0194940:intron | 15.0% |
| !! | TTTGAAAAACCTTAAAAATT+TGG | - | chr2_1:11495170-11495189 | Msa0194940:intron | 15.0% |
| !!! | TACAAATAACCAAATTTTTA+AGG | + | chr2_1:11495182-11495201 | None:intergenic | 15.0% |
| !! | ATTTGATAAGTTAATTTAGA+TGG | - | chr2_1:11495583-11495602 | Msa0194940:intron | 15.0% |
| !!! | TTGTTTTTTTTCCAAATTTT+AGG | - | chr2_1:11495765-11495784 | Msa0194940:intron | 15.0% |
| !! | CATATATATACTAACAATGA+AGG | + | chr2_1:11494902-11494921 | None:intergenic | 20.0% |
| !! | ATTGAAAAATAATTATTCCC+GGG | + | chr2_1:11495500-11495519 | None:intergenic | 20.0% |
| !! | GATTGAAAAATAATTATTCC+CGG | + | chr2_1:11495501-11495520 | None:intergenic | 20.0% |
| !! | TTTCAATCTTGTAACAAATA+TGG | - | chr2_1:11495513-11495532 | Msa0194940:intron | 20.0% |
| !! | TTCAATCTTGTAACAAATAT+GGG | - | chr2_1:11495514-11495533 | Msa0194940:intron | 20.0% |
| !!! | TTTTTTTTCCAAATTTTAGG+TGG | - | chr2_1:11495768-11495787 | Msa0194940:intron | 20.0% |
| !!! | TTTTTTTCCAAATTTTAGGT+GGG | - | chr2_1:11495769-11495788 | Msa0194940:intron | 20.0% |
| !!! | TGAATGTTTTTGTTTTGTTT+TGG | - | chr2_1:11496001-11496020 | Msa0194940:CDS | 20.0% |
| !!! | TGTACTGATTCAAAATATTT+TGG | - | chr2_1:11496080-11496099 | Msa0194940:intron | 20.0% |
| !! | GATAATTGTATTTAATCTGA+TGG | + | chr2_1:11496374-11496393 | None:intergenic | 20.0% |
| !!! | TTCAAGTTATTTGAGTTATT+TGG | - | chr2_1:11496447-11496466 | Msa0194940:intron | 20.0% |
| !! | TATTGTATAGAATAACTGTA+AGG | - | chr2_1:11496502-11496521 | Msa0194940:intron | 20.0% |
| !! | AATATTCACTATAGTACATA+TGG | - | chr2_1:11496585-11496604 | Msa0194940:intron | 20.0% |
| !!! | TGCTCTTATTTTAAGTTATT+TGG | - | chr2_1:11496616-11496635 | Msa0194940:intron | 20.0% |
| !! | ACAAGAAATACTTTATGTTT+AGG | + | chr2_1:11497361-11497380 | None:intergenic | 20.0% |
| !! | AGTAAACAATAAAGCTAATT+CGG | + | chr2_1:11497434-11497453 | None:intergenic | 20.0% |
| !! | ATTTGAAGAAATTAGGGTTT+TGG | + | chr2_1:11494650-11494669 | None:intergenic | 25.0% |
| ! | TAACTCTCTATAATTGTTCT+TGG | + | chr2_1:11495210-11495229 | None:intergenic | 25.0% |
| !! | TGTTAGGATTTTTATCTTTG+TGG | - | chr2_1:11495258-11495277 | Msa0194940:intron | 25.0% |
| !! | AAATAAATTCCAGTTTTCCT+AGG | + | chr2_1:11495398-11495417 | None:intergenic | 25.0% |
| !!! | GAATTGCATGTTTTAATTAC+TGG | - | chr2_1:11495718-11495737 | Msa0194940:intron | 25.0% |
| ! | ATATTTACGATGTGAAAGTT+AGG | - | chr2_1:11496310-11496329 | Msa0194940:CDS | 25.0% |
| ! | GCGTATTGTATAGAATTATT+TGG | - | chr2_1:11496473-11496492 | Msa0194940:intron | 25.0% |
| ! | AGTTATAGTTAAGAGAAACA+TGG | - | chr2_1:11496557-11496576 | Msa0194940:intron | 25.0% |
| ! | TAATAGGTAAAAGAGAATCA+GGG | - | chr2_1:11496713-11496732 | Msa0194940:intron | 25.0% |
| ! | AATTGAAAAAATTCCTAGTC+TGG | + | chr2_1:11497021-11497040 | None:intergenic | 25.0% |
| ! | GAATAATTAATTTCACTGAG+AGG | + | chr2_1:11497089-11497108 | None:intergenic | 25.0% |
| ! | TGAACACAAATCTAATAATC+TGG | + | chr2_1:11497479-11497498 | None:intergenic | 25.0% |
| ACCCTAATTTCTTCAAATCT+CGG | - | chr2_1:11494652-11494671 | Msa0194940:three_prime_UTR | 30.0% | |
| TCCGAGATTTGAAGAAATTA+GGG | + | chr2_1:11494656-11494675 | None:intergenic | 30.0% | |
| TTCCGAGATTTGAAGAAATT+AGG | + | chr2_1:11494657-11494676 | None:intergenic | 30.0% | |
| AGCATGATTATTCTATACTC+TGG | - | chr2_1:11495231-11495250 | Msa0194940:intron | 30.0% | |
| ! | AACTGACTCAAATTATTCCT+AGG | - | chr2_1:11495290-11495309 | Msa0194940:intron | 30.0% |
| AAAGACAGTAGTTTGAATCT+AGG | - | chr2_1:11495333-11495352 | Msa0194940:intron | 30.0% | |
| AAGACAGTAGTTTGAATCTA+GGG | - | chr2_1:11495334-11495353 | Msa0194940:intron | 30.0% | |
| TTGAATATTCCTAGGAAAAC+TGG | - | chr2_1:11495386-11495405 | Msa0194940:intron | 30.0% | |
| ACCAAATTTAATGGGAATGT+TGG | - | chr2_1:11495435-11495454 | Msa0194940:intron | 30.0% | |
| CCAAATTTAATGGGAATGTT+GGG | - | chr2_1:11495436-11495455 | Msa0194940:intron | 30.0% | |
| ATAATTATTCCCGGGTATAA+AGG | + | chr2_1:11495492-11495511 | None:intergenic | 30.0% | |
| ! | GTTTTTGTCAAAACACTCTT+AGG | + | chr2_1:11495551-11495570 | None:intergenic | 30.0% |
| ! | ATGTTGCTGTTGATATTGTT+TGG | - | chr2_1:11495691-11495710 | Msa0194940:intron | 30.0% |
| !!! | CATGTTTTAATTACTGGATG+TGG | - | chr2_1:11495724-11495743 | Msa0194940:intron | 30.0% |
| ! | TCAAACCAAAATGCGTTTTT+GGG | - | chr2_1:11495926-11495945 | Msa0194940:intron | 30.0% |
| ACTGTGTTTACACTGTTAAA+TGG | - | chr2_1:11495959-11495978 | Msa0194940:CDS | 30.0% | |
| !!! | GATTCAAAATATTTTGGAGC+AGG | - | chr2_1:11496086-11496105 | Msa0194940:intron | 30.0% |
| AACCTTAAACTATCTTCTGT+GGG | + | chr2_1:11496277-11496296 | None:intergenic | 30.0% | |
| AAACCTTAAACTATCTTCTG+TGG | + | chr2_1:11496278-11496297 | None:intergenic | 30.0% | |
| TAAGTATATTCTCTCTCTTC+TGG | + | chr2_1:11496426-11496445 | None:intergenic | 30.0% | |
| TTTCTCTTAACTATAACTGC+TGG | + | chr2_1:11496555-11496574 | None:intergenic | 30.0% | |
| ATCTGTACTGTATTGAACAA+CGG | - | chr2_1:11496640-11496659 | Msa0194940:intron | 30.0% | |
| GTAATAGGTAAAAGAGAATC+AGG | - | chr2_1:11496712-11496731 | Msa0194940:intron | 30.0% | |
| !! | TTTTTATGTTGCTATTGCAG+AGG | - | chr2_1:11497167-11497186 | Msa0194940:intron | 30.0% |
| TTTAGATACCTTATGGTGTA+TGG | - | chr2_1:11497250-11497269 | Msa0194940:intron | 30.0% | |
| !! | TTTAGGTGTTGAATCAAACA+TGG | + | chr2_1:11497344-11497363 | None:intergenic | 30.0% |
| GAACCTTGTCAAAAGAGAAA+TGG | + | chr2_1:11494609-11494628 | None:intergenic | 35.0% | |
| AGATACCATGGTTGAAAATG+CGG | + | chr2_1:11494680-11494699 | None:intergenic | 35.0% | |
| ATGTACGTATGAAGATACCA+TGG | + | chr2_1:11494692-11494711 | None:intergenic | 35.0% | |
| AATGTTACTGTCTCTTCCTT+TGG | + | chr2_1:11494811-11494830 | None:intergenic | 35.0% | |
| AAAGGAAGAGACAGTAACAT+TGG | - | chr2_1:11494810-11494829 | Msa0194940:three_prime_UTR | 35.0% | |
| AAGGAAGAGACAGTAACATT+GGG | - | chr2_1:11494811-11494830 | Msa0194940:three_prime_UTR | 35.0% | |
| ! | AAGGATGGTGAACATGTTTT+CGG | - | chr2_1:11494844-11494863 | Msa0194940:three_prime_UTR | 35.0% |
| !! | CAGCATGTTACTGATTTATC+CGG | - | chr2_1:11494999-11495018 | Msa0194940:intron | 35.0% |
| ACTCATACATACCAGTGATA+CGG | + | chr2_1:11495040-11495059 | None:intergenic | 35.0% | |
| ! | TCTATACTCTGGTTTGTGTT+AGG | - | chr2_1:11495242-11495261 | Msa0194940:intron | 35.0% |
| TTCTAGTGTATGTTGTTCCT+AGG | + | chr2_1:11495310-11495329 | None:intergenic | 35.0% | |
| CCCAACATTCCCATTAAATT+TGG | + | chr2_1:11495439-11495458 | None:intergenic | 35.0% | |
| TTCACAAGAACCTTTATACC+CGG | - | chr2_1:11495479-11495498 | Msa0194940:intron | 35.0% | |
| CAGCAACATGAATGTATCTT+AGG | + | chr2_1:11495680-11495699 | None:intergenic | 35.0% | |
| GCTGTTGATATTGTTTGGTT+TGG | - | chr2_1:11495696-11495715 | Msa0194940:intron | 35.0% | |
| CTTTCATCCCACCTAAAATT+TGG | + | chr2_1:11495779-11495798 | None:intergenic | 35.0% | |
| TTTAGGTGGGATGAAAGTTA+AGG | - | chr2_1:11495782-11495801 | Msa0194940:intron | 35.0% | |
| ! | GTCAAACCAAAATGCGTTTT+TGG | - | chr2_1:11495925-11495944 | Msa0194940:intron | 35.0% |
| ! | TTTCACCCAAAAACGCATTT+TGG | + | chr2_1:11495934-11495953 | None:intergenic | 35.0% |
| GGAATGAAAATTGGTCGTAT+AGG | - | chr2_1:11496216-11496235 | Msa0194940:intron | 35.0% | |
| AACCCACAGAAGATAGTTTA+AGG | - | chr2_1:11496272-11496291 | Msa0194940:intron | 35.0% | |
| TCTCTCTTCTGGTAAAATAG+AGG | + | chr2_1:11496415-11496434 | None:intergenic | 35.0% | |
| ! | TCAACGGTGAACCTTATTTA+CGG | + | chr2_1:11496674-11496693 | None:intergenic | 35.0% |
| TATCGTACTCAGTTCATCAA+CGG | + | chr2_1:11496690-11496709 | None:intergenic | 35.0% | |
| TTGATGAACTGAGTACGATA+TGG | - | chr2_1:11496690-11496709 | Msa0194940:intron | 35.0% | |
| ACTGAGTACGATATGGTAAT+AGG | - | chr2_1:11496697-11496716 | Msa0194940:intron | 35.0% | |
| AAAGAGAATCAGGGATATCT+AGG | - | chr2_1:11496722-11496741 | Msa0194940:intron | 35.0% | |
| CTAGGAAAATATGTTGCACA+AGG | - | chr2_1:11496740-11496759 | Msa0194940:intron | 35.0% | |
| CCAGAAAATCCAAATGTCTT+GGG | + | chr2_1:11496829-11496848 | None:intergenic | 35.0% | |
| ACCAGAAAATCCAAATGTCT+TGG | + | chr2_1:11496830-11496849 | None:intergenic | 35.0% | |
| ! | AAGACATTTGGATTTTCTGG+TGG | - | chr2_1:11496829-11496848 | Msa0194940:intron | 35.0% |
| !! | TTTCGTGGATTAGACTGAAA+CGG | + | chr2_1:11496984-11497003 | None:intergenic | 35.0% |
| TTTCAGTCTAATCCACGAAA+GGG | - | chr2_1:11496984-11497003 | Msa0194940:intron | 35.0% | |
| ATTTCACTGAGAGGAAGATA+AGG | + | chr2_1:11497080-11497099 | None:intergenic | 35.0% | |
| !! | AGAAGGCTTTAGATACCTTA+TGG | - | chr2_1:11497243-11497262 | Msa0194940:intron | 35.0% |
| CAAAATGCCACAATTCTGTT+TGG | + | chr2_1:11497306-11497325 | None:intergenic | 35.0% | |
| CCTTGTCAAAAGAGAAATGG+TGG | + | chr2_1:11494606-11494625 | None:intergenic | 40.0% | |
| ! | CCACCATTTCTCTTTTGACA+AGG | - | chr2_1:11494603-11494622 | Msa0194940:three_prime_UTR | 40.0% |
| GTGATAGTCGTCAAAGAGAA+AGG | - | chr2_1:11494777-11494796 | Msa0194940:three_prime_UTR | 40.0% | |
| AGTCGTCAAAGAGAAAGGTT+AGG | - | chr2_1:11494782-11494801 | Msa0194940:three_prime_UTR | 40.0% | |
| GTCGTCAAAGAGAAAGGTTA+GGG | - | chr2_1:11494783-11494802 | Msa0194940:three_prime_UTR | 40.0% | |
| !! | ATGTTACTGATTTATCCGGC+AGG | - | chr2_1:11495003-11495022 | Msa0194940:intron | 40.0% |
| !! | TGTTACTGATTTATCCGGCA+GGG | - | chr2_1:11495004-11495023 | Msa0194940:intron | 40.0% |
| CCTAGGAATATTCAAGAGTG+TGG | + | chr2_1:11495381-11495400 | None:intergenic | 40.0% | |
| CCACACTCTTGAATATTCCT+AGG | - | chr2_1:11495378-11495397 | Msa0194940:intron | 40.0% | |
| TCACAAGAACCTTTATACCC+GGG | - | chr2_1:11495480-11495499 | Msa0194940:intron | 40.0% | |
| !!! | AATATTTTGGAGCAGGAGCT+CGG | - | chr2_1:11496093-11496112 | Msa0194940:intron | 40.0% |
| TTTCATTCCAGAACGAGCAA+GGG | + | chr2_1:11496205-11496224 | None:intergenic | 40.0% | |
| ! | TTTTCATTCCAGAACGAGCA+AGG | + | chr2_1:11496206-11496225 | None:intergenic | 40.0% |
| !! | GCTCGTTCTGGAATGAAAAT+TGG | - | chr2_1:11496207-11496226 | Msa0194940:intron | 40.0% |
| CATCGTAAATATCAGAGAGC+AGG | + | chr2_1:11496302-11496321 | None:intergenic | 40.0% | |
| GGATAGACACTTCATCTCTA+TGG | + | chr2_1:11496801-11496820 | None:intergenic | 40.0% | |
| ATCCTTAGTCCCAAGACATT+TGG | - | chr2_1:11496817-11496836 | Msa0194940:intron | 40.0% | |
| ATCCAAATGTCTTGGGACTA+AGG | + | chr2_1:11496822-11496841 | None:intergenic | 40.0% | |
| ! | CCCAAGACATTTGGATTTTC+TGG | - | chr2_1:11496826-11496845 | Msa0194940:intron | 40.0% |
| !! | ACATTTGGATTTTCTGGTGG+TGG | - | chr2_1:11496832-11496851 | Msa0194940:intron | 40.0% |
| ! | TCTACCACGTGAGTTCTTTT+TGG | + | chr2_1:11496897-11496916 | None:intergenic | 40.0% |
| ATTTAGCAAGCAAACAGGGA+AGG | + | chr2_1:11496951-11496970 | None:intergenic | 40.0% | |
| CAGGATTTAGCAAGCAAACA+GGG | + | chr2_1:11496955-11496974 | None:intergenic | 40.0% | |
| ACAGGATTTAGCAAGCAAAC+AGG | + | chr2_1:11496956-11496975 | None:intergenic | 40.0% | |
| TAGACTGAAACGGTGATTAC+AGG | + | chr2_1:11496974-11496993 | None:intergenic | 40.0% | |
| GTTTCAGTCTAATCCACGAA+AGG | - | chr2_1:11496983-11497002 | Msa0194940:intron | 40.0% | |
| TTCCATGCCAAACAGAATTG+TGG | - | chr2_1:11497296-11497315 | Msa0194940:CDS | 40.0% | |
| TTCAGTGTTTGTCTGAGAAC+TGG | - | chr2_1:11497453-11497472 | Msa0194940:intron | 40.0% | |
| !! | TGTGTTCAGCTTCGAGTTTT+TGG | - | chr2_1:11497491-11497510 | Msa0194940:five_prime_UTR | 40.0% |
| AACATTGGGTCCAGCTGTTA+AGG | - | chr2_1:11494825-11494844 | Msa0194940:three_prime_UTR | 45.0% | |
| TGTTCACCATCCTTAACAGC+TGG | + | chr2_1:11494838-11494857 | None:intergenic | 45.0% | |
| CATACCAGTGATACGGACAA+GGG | + | chr2_1:11495033-11495052 | None:intergenic | 45.0% | |
| ACATACCAGTGATACGGACA+AGG | + | chr2_1:11495034-11495053 | None:intergenic | 45.0% | |
| GGATGTTGCTACTAGATGCA+AGG | - | chr2_1:11495851-11495870 | Msa0194940:intron | 45.0% | |
| GTTGCTACTAGATGCAAGGT+CGG | - | chr2_1:11495855-11495874 | Msa0194940:intron | 45.0% | |
| ACGGAGCTTAATGTGAAGTG+CGG | + | chr2_1:11496124-11496143 | None:intergenic | 45.0% | |
| !! | TTTGGTCTTGTTTCCACCAG+TGG | + | chr2_1:11496148-11496167 | None:intergenic | 45.0% |
| GGAAACAAGACCAAAACACC+TGG | - | chr2_1:11496153-11496172 | Msa0194940:intron | 45.0% | |
| CGGTCGAATTGCCGTAAATA+AGG | - | chr2_1:11496660-11496679 | Msa0194940:intron | 45.0% | |
| ! | CACGTGAGTTCTTTTTGGAC+TGG | + | chr2_1:11496892-11496911 | None:intergenic | 45.0% |
| CAGTCCAAAAAGAACTCACG+TGG | - | chr2_1:11496890-11496909 | Msa0194940:intron | 45.0% | |
| GAAATGTGACAACCCTTTCG+TGG | + | chr2_1:11496999-11497018 | None:intergenic | 45.0% | |
| GGTTGTCACATTTCCAGACT+AGG | - | chr2_1:11497005-11497024 | Msa0194940:intron | 45.0% | |
| CTGAGAGGAAGATAAGGTCA+GGG | + | chr2_1:11497074-11497093 | None:intergenic | 45.0% | |
| ACTGAGAGGAAGATAAGGTC+AGG | + | chr2_1:11497075-11497094 | None:intergenic | 45.0% | |
| ! | ACTCTTTCTACGGGTGCTAT+CGG | + | chr2_1:11497211-11497230 | None:intergenic | 45.0% |
| CCTTCTACCACTCTTTCTAC+GGG | + | chr2_1:11497220-11497239 | None:intergenic | 45.0% | |
| CCCTTCTACCACTCTTTCTA+CGG | + | chr2_1:11497221-11497240 | None:intergenic | 45.0% | |
| CCGTAGAAAGAGTGGTAGAA+GGG | - | chr2_1:11497218-11497237 | Msa0194940:intron | 45.0% | |
| CGTAGAAAGAGTGGTAGAAG+GGG | - | chr2_1:11497219-11497238 | Msa0194940:intron | 45.0% | |
| ACCTTATGGTGTATGGAAGC+TGG | - | chr2_1:11497257-11497276 | Msa0194940:intron | 45.0% | |
| TCCAGCTTCCATACACCATA+AGG | + | chr2_1:11497261-11497280 | None:intergenic | 45.0% | |
| TGCCACAATTCTGTTTGGCA+TGG | + | chr2_1:11497301-11497320 | None:intergenic | 45.0% | |
| TTGGATACTGATGCTGCTGC+TGG | + | chr2_1:11494631-11494650 | None:intergenic | 50.0% | |
| ! | CGGAACCGCATTTTCAACCA+TGG | - | chr2_1:11494672-11494691 | Msa0194940:three_prime_UTR | 50.0% |
| GAGAAAGGTTAGGGAGCCAA+AGG | - | chr2_1:11494792-11494811 | Msa0194940:three_prime_UTR | 50.0% | |
| TTGGGTCCAGCTGTTAAGGA+TGG | - | chr2_1:11494829-11494848 | Msa0194940:three_prime_UTR | 50.0% | |
| GAAACCCTTGTCCGTATCAC+TGG | - | chr2_1:11495026-11495045 | Msa0194940:intron | 50.0% | |
| ATCCTGTGCTGCAAGCATAG+CGG | + | chr2_1:11495835-11495854 | None:intergenic | 50.0% | |
| ! | TCTTGTTTCCACCAGTGGCA+CGG | + | chr2_1:11496143-11496162 | None:intergenic | 50.0% |
| !! | TTTCTGGTGGTGGTTGCTGT+AGG | - | chr2_1:11496842-11496861 | Msa0194940:intron | 50.0% |
| ! | TTTCTACGGGTGCTATCGGA+AGG | + | chr2_1:11497207-11497226 | None:intergenic | 50.0% |
| GATAGCACCCGTAGAAAGAG+TGG | - | chr2_1:11497210-11497229 | Msa0194940:intron | 50.0% | |
| CCCGTAGAAAGAGTGGTAGA+AGG | - | chr2_1:11497217-11497236 | Msa0194940:intron | 50.0% | |
| AGAGTGGTAGAAGGGGTAGA+AGG | - | chr2_1:11497226-11497245 | Msa0194940:intron | 50.0% | |
| GCTGCAAGCATAGCGGCATA+GGG | + | chr2_1:11495828-11495847 | None:intergenic | 55.0% | |
| TGCTGCAAGCATAGCGGCAT+AGG | + | chr2_1:11495829-11495848 | None:intergenic | 55.0% | |
| GCTACTAGATGCAAGGTCGG+TGG | - | chr2_1:11495858-11495877 | Msa0194940:intron | 55.0% | |
| CACATTAAGCTCCGTGCCAC+TGG | - | chr2_1:11496129-11496148 | Msa0194940:intron | 55.0% | |
| ! | ATTAAGCTCCGTGCCACTGG+TGG | - | chr2_1:11496132-11496151 | Msa0194940:intron | 55.0% |
| AAGACCAAAACACCTGGCCC+TGG | - | chr2_1:11496159-11496178 | Msa0194940:intron | 55.0% | |
| GAAGAGCAGCTTGAGCACCA+GGG | + | chr2_1:11496179-11496198 | None:intergenic | 55.0% | |
| ! | CGGGTGCTATCGGAAGGAAT+GGG | + | chr2_1:11497201-11497220 | None:intergenic | 55.0% |
| ! | ACGGGTGCTATCGGAAGGAA+TGG | + | chr2_1:11497202-11497221 | None:intergenic | 55.0% |
| ACGGACAAGGGTTTCCCTGC+CGG | + | chr2_1:11495021-11495040 | None:intergenic | 60.0% | |
| TGCCGCTATGCTTGCAGCAC+AGG | - | chr2_1:11495830-11495849 | Msa0194940:intron | 60.0% | |
| ! | AGCACCAGGGCCAGGTGTTT+TGG | + | chr2_1:11496166-11496185 | None:intergenic | 60.0% |
| CGAAGAGCAGCTTGAGCACC+AGG | + | chr2_1:11496180-11496199 | None:intergenic | 60.0% | |
| CTTCGTGCCCTTGCTCGTTC+TGG | - | chr2_1:11496195-11496214 | Msa0194940:intron | 60.0% | |
| GCAGCTTGAGCACCAGGGCC+AGG | + | chr2_1:11496174-11496193 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 11494595 | 11497578 | 11494595 | ID=Msa0194940;Name=Msa0194940 |
| chr2_1 | mRNA | 11494595 | 11497578 | 11494595 | ID=Msa0194940-mRNA-1;Parent=Msa0194940;Name=Msa0194940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=96|1|1|1|1|1|6|324|151 |
| chr2_1 | exon | 11494595 | 11494986 | 11494595 | ID=Msa0194940-mRNA-1:exon:5092;Parent=Msa0194940-mRNA-1 |
| chr2_1 | exon | 11495936 | 11496065 | 11495936 | ID=Msa0194940-mRNA-1:exon:5091;Parent=Msa0194940-mRNA-1 |
| chr2_1 | exon | 11496301 | 11496386 | 11496301 | ID=Msa0194940-mRNA-1:exon:5090;Parent=Msa0194940-mRNA-1 |
| chr2_1 | exon | 11497126 | 11497171 | 11497126 | ID=Msa0194940-mRNA-1:exon:5089;Parent=Msa0194940-mRNA-1 |
| chr2_1 | exon | 11497267 | 11497389 | 11497267 | ID=Msa0194940-mRNA-1:exon:5088;Parent=Msa0194940-mRNA-1 |
| chr2_1 | exon | 11497480 | 11497578 | 11497480 | ID=Msa0194940-mRNA-1:exon:5087;Parent=Msa0194940-mRNA-1 |
| chr2_1 | five_prime_UTR | 11497483 | 11497578 | 11497483 | ID=Msa0194940-mRNA-1:five_prime_utr;Parent=Msa0194940-mRNA-1 |
| chr2_1 | CDS | 11497480 | 11497482 | 11497480 | ID=Msa0194940-mRNA-1:cds;Parent=Msa0194940-mRNA-1 |
| chr2_1 | CDS | 11497267 | 11497389 | 11497267 | ID=Msa0194940-mRNA-1:cds;Parent=Msa0194940-mRNA-1 |
| chr2_1 | CDS | 11497126 | 11497171 | 11497126 | ID=Msa0194940-mRNA-1:cds;Parent=Msa0194940-mRNA-1 |
| chr2_1 | CDS | 11496301 | 11496386 | 11496301 | ID=Msa0194940-mRNA-1:cds;Parent=Msa0194940-mRNA-1 |
| chr2_1 | CDS | 11495936 | 11496065 | 11495936 | ID=Msa0194940-mRNA-1:cds;Parent=Msa0194940-mRNA-1 |
| chr2_1 | CDS | 11494919 | 11494986 | 11494919 | ID=Msa0194940-mRNA-1:cds;Parent=Msa0194940-mRNA-1 |
| chr2_1 | three_prime_UTR | 11494595 | 11494918 | 11494595 | ID=Msa0194940-mRNA-1:three_prime_utr;Parent=Msa0194940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
