AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463670 MtrunA17_Chr4g0057151 89.855 69 7 0 84 152 88 156 7.29e-36 124
Msa1463670 MtrunA17_Chr8g0351031 63.492 63 23 0 95 157 100 162 1.17e-19 82.4
Msa1463670 MtrunA17_Chr7g0246431 64.407 59 21 0 95 153 99 157 9.50e-18 77.0
Msa1463670 MtrunA17_Chr8g0351041 62.069 58 22 0 95 152 100 157 3.13e-17 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463670 AT4G22950.2 68.421 57 18 0 94 150 97 153 4.10e-19 80.1
Msa1463670 AT4G22950.3 68.421 57 18 0 94 150 97 153 1.01e-18 80.1
Msa1463670 AT4G22950.1 68.421 57 18 0 94 150 97 153 1.01e-18 80.1
Msa1463670 AT2G45660.2 56.522 69 30 0 84 152 88 156 6.80e-18 76.6
Msa1463670 AT4G11880.2 53.521 71 31 1 95 163 99 169 3.05e-17 75.5
Msa1463670 AT4G11880.3 53.521 71 31 1 95 163 99 169 3.05e-17 75.5
Msa1463670 AT2G45660.1 57.353 68 29 0 85 152 89 156 3.99e-17 75.9
Msa1463670 AT5G62165.17 60.000 55 22 0 96 150 100 154 9.99e-14 65.5
Msa1463670 AT5G62165.12 60.000 55 22 0 96 150 100 154 9.99e-14 65.5
Msa1463670 AT5G62165.11 60.000 55 22 0 96 150 100 154 9.99e-14 65.5
Msa1463670 AT5G62165.3 54.839 62 28 0 96 157 100 161 3.63e-13 65.1
Msa1463670 AT5G62165.1 54.839 62 28 0 96 157 100 161 3.63e-13 65.1
Msa1463670 AT5G62165.2 54.839 62 28 0 96 157 100 161 3.63e-13 65.1
Msa1463670 AT4G11880.4 59.184 49 20 0 95 143 99 147 5.52e-12 62.0
Msa1463670 AT4G11880.1 59.184 49 20 0 95 143 99 147 5.52e-12 62.0
Msa1463670 AT5G62165.15 57.143 49 21 0 105 153 56 104 2.97e-11 58.9
Msa1463670 AT5G62165.5 57.143 49 21 0 105 153 56 104 2.97e-11 58.9

Find 72 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGTGGCAACGCATTATT+TGG 0.179693 tig0043580:+3114 Msa1463670:three_prime_UTR
TCCTAAGTCCTAGTCATTTA+TGG 0.198666 tig0043580:+3177 Msa1463670:three_prime_UTR
TTGTTTAATCTCAGTCCTTT+AGG 0.215544 tig0043580:+757 None:intergenic
AGTGGCCATCGATCTCTTTC+TGG 0.253905 tig0043580:+984 Msa1463670:CDS
TGTTTAATCTCAGTCCTTTA+GGG 0.287083 tig0043580:+758 None:intergenic
ACAATAGGGAAGAAATAATT+AGG 0.296068 tig0043580:+3070 Msa1463670:three_prime_UTR
ATCTCAGTCCTTTAGGGAAA+TGG 0.298860 tig0043580:+764 None:intergenic
GAAGTTGTTGGGAGATGAAT+TGG 0.314977 tig0043580:+2095 Msa1463670:CDS
AACGTAGCTTAAGCAAAATA+AGG 0.327292 tig0043580:+2163 Msa1463670:CDS
ATTAACATTGAAAGTTAATA+AGG 0.329577 tig0043580:+2851 Msa1463670:three_prime_UTR
TATGCATATTCTTCTGTTGC+TGG 0.330921 tig0043580:-2807 Msa1463670:intergenic
GTGGCGAGATATCTCTTTGT+TGG 0.351222 tig0043580:+895 Msa1463670:CDS
TGGCGCCATGTCCTGGTTGT+TGG 0.371163 tig0043580:+819 Msa1463670:CDS
CATGTATTGTAGGAAGTTGT+TGG 0.371428 tig0043580:+2083 Msa1463670:intron
GATACTTTGGCGCCATGTCC+TGG 0.378866 tig0043580:+812 Msa1463670:CDS
TGGATGAATATTTATTCATA+TGG 0.379817 tig0043580:-2875 Msa1463670:intergenic
TCTCTTTCTGGAATTGAAGT+TGG 0.383781 tig0043580:+996 Msa1463670:CDS
ATTAATTGATATAATGAGTC+AGG 0.383916 tig0043580:-2986 Msa1463670:intergenic
TTCTGGAATTGAAGTTGGAT+TGG 0.385278 tig0043580:+1001 Msa1463670:CDS
TCATTGTTGTAGTGTGGAAT+TGG 0.395925 tig0043580:+2659 Msa1463670:intron
TTTGAACTACTGGAATTCAT+TGG 0.409431 tig0043580:+868 Msa1463670:CDS
TAAATAACAACACTAAGATA+TGG 0.415637 tig0043580:+2696 Msa1463670:exon
TCTGTGTTATGTAGTGAAAA+TGG 0.418965 tig0043580:+3041 Msa1463670:three_prime_UTR
CAACGCATTATTTGGAGAAC+AGG 0.419586 tig0043580:+3122 Msa1463670:three_prime_UTR
TGGCGAGATATCTCTTTGTT+GGG 0.422561 tig0043580:+896 Msa1463670:CDS
AAGACCAACCTTTGAACTAC+TGG 0.423907 tig0043580:+858 Msa1463670:CDS
GTGGAGACAGAATTGTTCAT+AGG 0.429449 tig0043580:+2750 Msa1463670:three_prime_UTR
AACCAACCAACCTCTTGCTT+AGG 0.430219 tig0043580:-933 Msa1463670:intergenic
GGCGCCATGTCCTGGTTGTT+GGG 0.433454 tig0043580:+820 Msa1463670:CDS
TCTGGAATTGAAGTTGGATT+GGG 0.436247 tig0043580:+1002 Msa1463670:CDS
ATGTATTGTAGGAAGTTGTT+GGG 0.449480 tig0043580:+2084 Msa1463670:intron
GAGGTTGGTTGGTTCCCGTA+TGG 0.459005 tig0043580:+942 Msa1463670:CDS
TCTTGCTTAGGGTTGGAACT+TGG 0.466399 tig0043580:-921 None:intergenic
GTCCTTTAGGGAAATGGAGA+TGG 0.469819 tig0043580:+770 None:intergenic
CCCCATCTCCATTTCCCTAA+AGG 0.473736 tig0043580:-772 Msa1463670:intergenic
ACGTAGCTTAAGCAAAATAA+GGG 0.475882 tig0043580:+2164 Msa1463670:CDS
TATAGACACAACAAAGAAGT+TGG 0.480797 tig0043580:+1933 Msa1463670:CDS
ACCAACCAACCTCTTGCTTA+GGG 0.483923 tig0043580:-932 Msa1463670:intergenic
ACTGGAATTCATTGGCTTGG+TGG 0.487727 tig0043580:+876 Msa1463670:CDS
AAGCAAAATAAGGGCAAGAA+AGG 0.493681 tig0043580:+2173 Msa1463670:CDS
AAGTTGTTGGGAGATGAATT+GGG 0.494375 tig0043580:+2096 Msa1463670:CDS
ACCCTAAGCAAGAGGTTGGT+TGG 0.494929 tig0043580:+931 Msa1463670:CDS
ACCAACCTCTTGCTTAGGGT+TGG 0.495958 tig0043580:-928 None:intergenic
TGACTAGGACTTAGGAGTAT+TGG 0.500315 tig0043580:-3170 None:intergenic
TCCTTTAGGGAAATGGAGAT+GGG 0.502955 tig0043580:+771 None:intergenic
ACCATAAATGACTAGGACTT+AGG 0.511820 tig0043580:-3178 Msa1463670:intergenic
AAGTGTGCATGACGAGGAGG+TGG 0.514450 tig0043580:+2731 Msa1463670:three_prime_UTR
ACTACTGGAATTCATTGGCT+TGG 0.517508 tig0043580:+873 Msa1463670:CDS
AATGAATTCCAGTAGTTCAA+AGG 0.518734 tig0043580:-866 Msa1463670:intergenic
GGGAAGAAATAATTAGGTAG+TGG 0.532781 tig0043580:+3076 Msa1463670:three_prime_UTR
AGGTTGGTTGGTTCCCGTAT+GGG 0.533167 tig0043580:+943 Msa1463670:CDS
CTAGGACTTAGGAGTATTGG+TGG 0.534214 tig0043580:-3167 Msa1463670:intergenic
AAATAAACGCTTATGCAAGC+AGG 0.536574 tig0043580:+2464 Msa1463670:CDS
TGTTCAGAATCATTTGCTGA+AGG 0.553995 tig0043580:+2276 Msa1463670:intron
AATTCCAGTAGTTCAAAGGT+TGG 0.554836 tig0043580:-862 Msa1463670:intergenic
TCCAACCCTAAGCAAGAGGT+TGG 0.554916 tig0043580:+927 Msa1463670:CDS
AACACCTAGAGCTTTCCAAA+AGG 0.559845 tig0043580:+1956 Msa1463670:CDS
GAAGAATATGCATATACGTA+AGG 0.562177 tig0043580:+2816 Msa1463670:three_prime_UTR
TGGAGACAGAATTGTTCATA+GGG 0.567939 tig0043580:+2751 Msa1463670:three_prime_UTR
AATTAGATATAACATATACA+TGG 0.571290 tig0043580:-2900 Msa1463670:intergenic
AAGTTCCAACCCTAAGCAAG+AGG 0.578710 tig0043580:+923 Msa1463670:CDS
GATATAACATATACATGGTG+TGG 0.584957 tig0043580:-2895 Msa1463670:intergenic
TGTATTGTACAAATAGATAG+TGG 0.586294 tig0043580:+3099 Msa1463670:three_prime_UTR
AAATTGAAAAGCTAAAAGAA+AGG 0.601105 tig0043580:+2302 Msa1463670:CDS
TGTACCCAACAACCAGGACA+TGG 0.621346 tig0043580:-824 Msa1463670:intergenic
AAATTGCACCATAAATGACT+AGG 0.625632 tig0043580:-3185 Msa1463670:intergenic
AACAGAAAGTGTGCATGACG+AGG 0.635381 tig0043580:+2725 Msa1463670:three_prime_UTR
AGATATTGTACCCAACAACC+AGG 0.653918 tig0043580:-830 Msa1463670:intergenic
CTTTAGGGAAATGGAGATGG+GGG 0.660460 tig0043580:+773 Msa1463670:CDS
CCTTTAGGGAAATGGAGATG+GGG 0.662544 tig0043580:+772 Msa1463670:CDS
CAATTCCAGAAAGAGATCGA+TGG 0.662661 tig0043580:-989 Msa1463670:intergenic
AGAAAGTGTGCATGACGAGG+AGG 0.669061 tig0043580:+2728 Msa1463670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATCAATTAATTTTTGTT+TGG + tig0043580:2996-3015 Msa1463670:three_prime_UTR 10.0%
!!! TATATCAATTAATTTTTGTT+TGG + tig0043580:2996-3015 Msa1463670:three_prime_UTR 10.0%
!! ATAAATAAAAATGAGTACAA+TGG - tig0043580:1757-1776 Msa1463670:intergenic 15.0%
!! ATTAACATTGAAAGTTAATA+AGG + tig0043580:2851-2870 Msa1463670:three_prime_UTR 15.0%
!! AATTAGATATAACATATACA+TGG - tig0043580:2903-2922 Msa1463670:intergenic 15.0%
!! ATAAATAAAAATGAGTACAA+TGG - tig0043580:1757-1776 Msa1463670:intergenic 15.0%
!! ATTAACATTGAAAGTTAATA+AGG + tig0043580:2851-2870 Msa1463670:three_prime_UTR 15.0%
!! AATTAGATATAACATATACA+TGG - tig0043580:2903-2922 Msa1463670:intergenic 15.0%
!!! ATCAAGTTGAATTTACATAT+GGG - tig0043580:1440-1459 Msa1463670:intergenic 20.0%
!!! AATCAAGTTGAATTTACATA+TGG - tig0043580:1441-1460 Msa1463670:intergenic 20.0%
!! CTAAAAAAAAAACACAACAA+AGG - tig0043580:1700-1719 Msa1463670:intergenic 20.0%
!!! TGTGATTGCTAATTTTTTTA+AGG - tig0043580:1794-1813 Msa1463670:intergenic 20.0%
!! TGATTATTCTTATGTTCTAT+TGG + tig0043580:2053-2072 Msa1463670:intron 20.0%
!! AAATTGAAAAGCTAAAAGAA+AGG + tig0043580:2302-2321 Msa1463670:CDS 20.0%
!! TAAATAACAACACTAAGATA+TGG + tig0043580:2696-2715 Msa1463670:exon 20.0%
!! TGGATGAATATTTATTCATA+TGG - tig0043580:2878-2897 Msa1463670:intergenic 20.0%
!! ATTAATTGATATAATGAGTC+AGG - tig0043580:2989-3008 Msa1463670:intergenic 20.0%
!!! TTTTTGTTTGGATAATTAGA+AGG + tig0043580:3008-3027 Msa1463670:three_prime_UTR 20.0%
!!! ATCAAGTTGAATTTACATAT+GGG - tig0043580:1440-1459 Msa1463670:intergenic 20.0%
!!! AATCAAGTTGAATTTACATA+TGG - tig0043580:1441-1460 Msa1463670:intergenic 20.0%
!! CTAAAAAAAAAACACAACAA+AGG - tig0043580:1700-1719 Msa1463670:intergenic 20.0%
!!! TGTGATTGCTAATTTTTTTA+AGG - tig0043580:1794-1813 Msa1463670:intergenic 20.0%
!! TGATTATTCTTATGTTCTAT+TGG + tig0043580:2053-2072 Msa1463670:intron 20.0%
!! AAATTGAAAAGCTAAAAGAA+AGG + tig0043580:2302-2321 Msa1463670:CDS 20.0%
!! TAAATAACAACACTAAGATA+TGG + tig0043580:2696-2715 Msa1463670:exon 20.0%
!! TGGATGAATATTTATTCATA+TGG - tig0043580:2878-2897 Msa1463670:intergenic 20.0%
!! ATTAATTGATATAATGAGTC+AGG - tig0043580:2989-3008 Msa1463670:intergenic 20.0%
!!! TTTTTGTTTGGATAATTAGA+AGG + tig0043580:3008-3027 Msa1463670:three_prime_UTR 20.0%
! TCTCTACTATCTAATAAACA+TGG - tig0043580:1052-1071 Msa1463670:intergenic 25.0%
! ATTCGTTTGGAAAGAATAAT+TGG + tig0043580:1151-1170 Msa1463670:intron 25.0%
!! TTAGATATTTTACGTCTCAA+TGG + tig0043580:1176-1195 Msa1463670:intron 25.0%
!!! AAGAATTTTAATCCCATTGT+TGG - tig0043580:1324-1343 Msa1463670:intergenic 25.0%
! TGGGATTAAAATTCTTACTA+AGG + tig0043580:1328-1347 Msa1463670:intron 25.0%
! TTAAAATTCTTACTAAGGTG+TGG + tig0043580:1333-1352 Msa1463670:intron 25.0%
! GTAATTTCTCTCGTAAAATT+CGG + tig0043580:1508-1527 Msa1463670:intron 25.0%
! AGAACCATCTTTCTTTAATT+TGG + tig0043580:1984-2003 Msa1463670:intron 25.0%
! TCAATATGTAACAGTCAAAA+TGG - tig0043580:2012-2031 Msa1463670:intergenic 25.0%
!!! ATTTTGACTGTTACATATTG+AGG + tig0043580:2011-2030 Msa1463670:intron 25.0%
!! TGGATATTTTCATGTATTGT+AGG + tig0043580:2073-2092 Msa1463670:intron 25.0%
!! TTTTTGCTCTAACTTAATTC+AGG + tig0043580:2422-2441 Msa1463670:intron 25.0%
! TTAATCAAGGTGAAAAACAA+TGG - tig0043580:2618-2637 Msa1463670:intergenic 25.0%
!!! CAGATATTTGCTTTTAATCA+AGG - tig0043580:2631-2650 Msa1463670:intergenic 25.0%
!! TCTCAATTCATTCTTTTCTT+CGG - tig0043580:2780-2799 Msa1463670:intergenic 25.0%
! TGAAAATGGACAAAAACAAT+AGG + tig0043580:3055-3074 Msa1463670:three_prime_UTR 25.0%
! GAAAATGGACAAAAACAATA+GGG + tig0043580:3056-3075 Msa1463670:three_prime_UTR 25.0%
! ACAATAGGGAAGAAATAATT+AGG + tig0043580:3070-3089 Msa1463670:three_prime_UTR 25.0%
! TGTATTGTACAAATAGATAG+TGG + tig0043580:3099-3118 Msa1463670:three_prime_UTR 25.0%
! TCTCTACTATCTAATAAACA+TGG - tig0043580:1052-1071 Msa1463670:intergenic 25.0%
! ATTCGTTTGGAAAGAATAAT+TGG + tig0043580:1151-1170 Msa1463670:intron 25.0%
!! TTAGATATTTTACGTCTCAA+TGG + tig0043580:1176-1195 Msa1463670:intron 25.0%
!!! AAGAATTTTAATCCCATTGT+TGG - tig0043580:1324-1343 Msa1463670:intergenic 25.0%
! TGGGATTAAAATTCTTACTA+AGG + tig0043580:1328-1347 Msa1463670:intron 25.0%
! TTAAAATTCTTACTAAGGTG+TGG + tig0043580:1333-1352 Msa1463670:intron 25.0%
! GTAATTTCTCTCGTAAAATT+CGG + tig0043580:1508-1527 Msa1463670:intron 25.0%
! AGAACCATCTTTCTTTAATT+TGG + tig0043580:1984-2003 Msa1463670:intron 25.0%
! TCAATATGTAACAGTCAAAA+TGG - tig0043580:2012-2031 Msa1463670:intergenic 25.0%
!!! ATTTTGACTGTTACATATTG+AGG + tig0043580:2011-2030 Msa1463670:intron 25.0%
!! TGGATATTTTCATGTATTGT+AGG + tig0043580:2073-2092 Msa1463670:intron 25.0%
!! TTTTTGCTCTAACTTAATTC+AGG + tig0043580:2422-2441 Msa1463670:intron 25.0%
! TTAATCAAGGTGAAAAACAA+TGG - tig0043580:2618-2637 Msa1463670:intergenic 25.0%
!!! CAGATATTTGCTTTTAATCA+AGG - tig0043580:2631-2650 Msa1463670:intergenic 25.0%
!! TCTCAATTCATTCTTTTCTT+CGG - tig0043580:2780-2799 Msa1463670:intergenic 25.0%
! TGAAAATGGACAAAAACAAT+AGG + tig0043580:3055-3074 Msa1463670:three_prime_UTR 25.0%
! GAAAATGGACAAAAACAATA+GGG + tig0043580:3056-3075 Msa1463670:three_prime_UTR 25.0%
! ACAATAGGGAAGAAATAATT+AGG + tig0043580:3070-3089 Msa1463670:three_prime_UTR 25.0%
! TGTATTGTACAAATAGATAG+TGG + tig0043580:3099-3118 Msa1463670:three_prime_UTR 25.0%
AATGAATTCCAGTAGTTCAA+AGG - tig0043580:869-888 Msa1463670:intergenic 30.0%
TTTGAACTACTGGAATTCAT+TGG + tig0043580:868-887 Msa1463670:CDS 30.0%
!! AGATTTTTAACTCTCCCATA+CGG - tig0043580:960-979 Msa1463670:intergenic 30.0%
ATGGGAGAGTTAAAAATCTT+TGG + tig0043580:961-980 Msa1463670:CDS 30.0%
! AGAGTTAAAAATCTTTGGAG+TGG + tig0043580:966-985 Msa1463670:CDS 30.0%
!!! CAACTTGATTTGTGTTTTGT+AGG + tig0043580:1451-1470 Msa1463670:intron 30.0%
AAAAACAAGCCAAAAAGATC+GGG - tig0043580:1574-1593 Msa1463670:intergenic 30.0%
GAAAAACAAGCCAAAAAGAT+CGG - tig0043580:1575-1594 Msa1463670:intergenic 30.0%
!! GTTTTTCGATTCTACTCTTT+TGG + tig0043580:1588-1607 Msa1463670:intron 30.0%
ATTCAGTTGTTGAGATGATT+TGG + tig0043580:1648-1667 Msa1463670:intron 30.0%
! TTTTTAGACTCGACTCATAA+TGG + tig0043580:1713-1732 Msa1463670:intron 30.0%
! TTTTAGACTCGACTCATAAT+GGG + tig0043580:1714-1733 Msa1463670:intron 30.0%
!! TGTATAAGTCGTTGGTTTAT+TGG + tig0043580:1820-1839 Msa1463670:intron 30.0%
TATAGACACAACAAAGAAGT+TGG + tig0043580:1933-1952 Msa1463670:CDS 30.0%
GGAACCAAATTAAAGAAAGA+TGG - tig0043580:1991-2010 Msa1463670:intergenic 30.0%
ATGTATTGTAGGAAGTTGTT+GGG + tig0043580:2084-2103 Msa1463670:intron 30.0%
AACGTAGCTTAAGCAAAATA+AGG + tig0043580:2163-2182 Msa1463670:CDS 30.0%
ACGTAGCTTAAGCAAAATAA+GGG + tig0043580:2164-2183 Msa1463670:CDS 30.0%
! AGTTCTTCAATTAGGTGTTT+TGG - tig0043580:2244-2263 Msa1463670:intergenic 30.0%
AAACACCTAATTGAAGAACT+CGG + tig0043580:2244-2263 Msa1463670:intron 30.0%
GTAACACTGATACTTTCAAT+CGG - tig0043580:2560-2579 Msa1463670:intergenic 30.0%
GAAGAATATGCATATACGTA+AGG + tig0043580:2816-2835 Msa1463670:three_prime_UTR 30.0%
GATATAACATATACATGGTG+TGG - tig0043580:2898-2917 Msa1463670:intergenic 30.0%
! ATTTTCACTACATAACACAG+AGG - tig0043580:3042-3061 Msa1463670:intergenic 30.0%
TCTGTGTTATGTAGTGAAAA+TGG + tig0043580:3041-3060 Msa1463670:three_prime_UTR 30.0%
AAATTGCACCATAAATGACT+AGG - tig0043580:3188-3207 Msa1463670:intergenic 30.0%
AATGAATTCCAGTAGTTCAA+AGG - tig0043580:869-888 Msa1463670:intergenic 30.0%
TTTGAACTACTGGAATTCAT+TGG + tig0043580:868-887 Msa1463670:CDS 30.0%
!! AGATTTTTAACTCTCCCATA+CGG - tig0043580:960-979 Msa1463670:intergenic 30.0%
ATGGGAGAGTTAAAAATCTT+TGG + tig0043580:961-980 Msa1463670:CDS 30.0%
! AGAGTTAAAAATCTTTGGAG+TGG + tig0043580:966-985 Msa1463670:CDS 30.0%
!!! CAACTTGATTTGTGTTTTGT+AGG + tig0043580:1451-1470 Msa1463670:intron 30.0%
AAAAACAAGCCAAAAAGATC+GGG - tig0043580:1574-1593 Msa1463670:intergenic 30.0%
GAAAAACAAGCCAAAAAGAT+CGG - tig0043580:1575-1594 Msa1463670:intergenic 30.0%
!! GTTTTTCGATTCTACTCTTT+TGG + tig0043580:1588-1607 Msa1463670:intron 30.0%
ATTCAGTTGTTGAGATGATT+TGG + tig0043580:1648-1667 Msa1463670:intron 30.0%
! TTTTTAGACTCGACTCATAA+TGG + tig0043580:1713-1732 Msa1463670:intron 30.0%
! TTTTAGACTCGACTCATAAT+GGG + tig0043580:1714-1733 Msa1463670:intron 30.0%
!! TGTATAAGTCGTTGGTTTAT+TGG + tig0043580:1820-1839 Msa1463670:intron 30.0%
TATAGACACAACAAAGAAGT+TGG + tig0043580:1933-1952 Msa1463670:CDS 30.0%
GGAACCAAATTAAAGAAAGA+TGG - tig0043580:1991-2010 Msa1463670:intergenic 30.0%
ATGTATTGTAGGAAGTTGTT+GGG + tig0043580:2084-2103 Msa1463670:intron 30.0%
AACGTAGCTTAAGCAAAATA+AGG + tig0043580:2163-2182 Msa1463670:CDS 30.0%
ACGTAGCTTAAGCAAAATAA+GGG + tig0043580:2164-2183 Msa1463670:CDS 30.0%
! AGTTCTTCAATTAGGTGTTT+TGG - tig0043580:2244-2263 Msa1463670:intergenic 30.0%
AAACACCTAATTGAAGAACT+CGG + tig0043580:2244-2263 Msa1463670:intron 30.0%
GTAACACTGATACTTTCAAT+CGG - tig0043580:2560-2579 Msa1463670:intergenic 30.0%
GAAGAATATGCATATACGTA+AGG + tig0043580:2816-2835 Msa1463670:three_prime_UTR 30.0%
GATATAACATATACATGGTG+TGG - tig0043580:2898-2917 Msa1463670:intergenic 30.0%
! ATTTTCACTACATAACACAG+AGG - tig0043580:3042-3061 Msa1463670:intergenic 30.0%
TCTGTGTTATGTAGTGAAAA+TGG + tig0043580:3041-3060 Msa1463670:three_prime_UTR 30.0%
AAATTGCACCATAAATGACT+AGG - tig0043580:3188-3207 Msa1463670:intergenic 30.0%
AATTCCAGTAGTTCAAAGGT+TGG - tig0043580:865-884 Msa1463670:intergenic 35.0%
!! GATTTTTAACTCTCCCATAC+GGG - tig0043580:959-978 Msa1463670:intergenic 35.0%
!! TCTCTTTCTGGAATTGAAGT+TGG + tig0043580:996-1015 Msa1463670:CDS 35.0%
!! TTCTGGAATTGAAGTTGGAT+TGG + tig0043580:1001-1020 Msa1463670:CDS 35.0%
! TCTGGAATTGAAGTTGGATT+GGG + tig0043580:1002-1021 Msa1463670:CDS 35.0%
AGTAGAGAATGAAACCTCAA+TGG + tig0043580:1064-1083 Msa1463670:intron 35.0%
! TTTGGGTTTGGGATCTTAAA+TGG + tig0043580:1117-1136 Msa1463670:intron 35.0%
!! TGATTTGTGTTTTGTAGGCA+TGG + tig0043580:1456-1475 Msa1463670:intron 35.0%
! GATTTGTGTTTTGTAGGCAT+GGG + tig0043580:1457-1476 Msa1463670:intron 35.0%
! TTCGATTCTACTCTTTTGGT+AGG + tig0043580:1592-1611 Msa1463670:intron 35.0%
! ACTCTTTTGGTAGGTTAGTA+AGG + tig0043580:1601-1620 Msa1463670:intron 35.0%
! CTCTTTTGGTAGGTTAGTAA+GGG + tig0043580:1602-1621 Msa1463670:intron 35.0%
! TCTTTTGGTAGGTTAGTAAG+GGG + tig0043580:1603-1622 Msa1463670:intron 35.0%
! AGTTGTTGAGATGATTTGGA+AGG + tig0043580:1652-1671 Msa1463670:intron 35.0%
CATCTGAATGTATAAGTCGT+TGG + tig0043580:1812-1831 Msa1463670:intron 35.0%
TTATTGGTGAGTGATTGTGT+TGG + tig0043580:1836-1855 Msa1463670:intron 35.0%
!! AAAACCTTTTGGAAAGCTCT+AGG - tig0043580:1963-1982 Msa1463670:intergenic 35.0%
!!! AGATGGTTCTGAAAACCTTT+TGG - tig0043580:1974-1993 Msa1463670:intergenic 35.0%
CATGTATTGTAGGAAGTTGT+TGG + tig0043580:2083-2102 Msa1463670:intron 35.0%
AAGTTGTTGGGAGATGAATT+GGG + tig0043580:2096-2115 Msa1463670:CDS 35.0%
AAGCAAAATAAGGGCAAGAA+AGG + tig0043580:2173-2192 Msa1463670:CDS 35.0%
! TGTTCAGAATCATTTGCTGA+AGG + tig0043580:2276-2295 Msa1463670:intron 35.0%
GCTCTAACTTAATTCAGGAA+AGG + tig0043580:2427-2446 Msa1463670:intron 35.0%
AAATAAACGCTTATGCAAGC+AGG + tig0043580:2464-2483 Msa1463670:CDS 35.0%
TTCACTTCATTGTTGTAGTG+TGG + tig0043580:2653-2672 Msa1463670:intron 35.0%
TCATTGTTGTAGTGTGGAAT+TGG + tig0043580:2659-2678 Msa1463670:intron 35.0%
TGGAGACAGAATTGTTCATA+GGG + tig0043580:2751-2770 Msa1463670:three_prime_UTR 35.0%
TATGCATATTCTTCTGTTGC+TGG - tig0043580:2810-2829 Msa1463670:intergenic 35.0%
GGGAAGAAATAATTAGGTAG+TGG + tig0043580:3076-3095 Msa1463670:three_prime_UTR 35.0%
TCCTAAGTCCTAGTCATTTA+TGG + tig0043580:3177-3196 Msa1463670:three_prime_UTR 35.0%
ACCATAAATGACTAGGACTT+AGG - tig0043580:3181-3200 Msa1463670:intergenic 35.0%
AATTCCAGTAGTTCAAAGGT+TGG - tig0043580:865-884 Msa1463670:intergenic 35.0%
!! GATTTTTAACTCTCCCATAC+GGG - tig0043580:959-978 Msa1463670:intergenic 35.0%
!! TCTCTTTCTGGAATTGAAGT+TGG + tig0043580:996-1015 Msa1463670:CDS 35.0%
!! TTCTGGAATTGAAGTTGGAT+TGG + tig0043580:1001-1020 Msa1463670:CDS 35.0%
! TCTGGAATTGAAGTTGGATT+GGG + tig0043580:1002-1021 Msa1463670:CDS 35.0%
AGTAGAGAATGAAACCTCAA+TGG + tig0043580:1064-1083 Msa1463670:intron 35.0%
! TTTGGGTTTGGGATCTTAAA+TGG + tig0043580:1117-1136 Msa1463670:intron 35.0%
!! TGATTTGTGTTTTGTAGGCA+TGG + tig0043580:1456-1475 Msa1463670:intron 35.0%
! GATTTGTGTTTTGTAGGCAT+GGG + tig0043580:1457-1476 Msa1463670:intron 35.0%
! TTCGATTCTACTCTTTTGGT+AGG + tig0043580:1592-1611 Msa1463670:intron 35.0%
! ACTCTTTTGGTAGGTTAGTA+AGG + tig0043580:1601-1620 Msa1463670:intron 35.0%
! CTCTTTTGGTAGGTTAGTAA+GGG + tig0043580:1602-1621 Msa1463670:intron 35.0%
! TCTTTTGGTAGGTTAGTAAG+GGG + tig0043580:1603-1622 Msa1463670:intron 35.0%
! AGTTGTTGAGATGATTTGGA+AGG + tig0043580:1652-1671 Msa1463670:intron 35.0%
CATCTGAATGTATAAGTCGT+TGG + tig0043580:1812-1831 Msa1463670:intron 35.0%
TTATTGGTGAGTGATTGTGT+TGG + tig0043580:1836-1855 Msa1463670:intron 35.0%
!! AAAACCTTTTGGAAAGCTCT+AGG - tig0043580:1963-1982 Msa1463670:intergenic 35.0%
!!! AGATGGTTCTGAAAACCTTT+TGG - tig0043580:1974-1993 Msa1463670:intergenic 35.0%
CATGTATTGTAGGAAGTTGT+TGG + tig0043580:2083-2102 Msa1463670:intron 35.0%
AAGTTGTTGGGAGATGAATT+GGG + tig0043580:2096-2115 Msa1463670:CDS 35.0%
AAGCAAAATAAGGGCAAGAA+AGG + tig0043580:2173-2192 Msa1463670:CDS 35.0%
! TGTTCAGAATCATTTGCTGA+AGG + tig0043580:2276-2295 Msa1463670:intron 35.0%
GCTCTAACTTAATTCAGGAA+AGG + tig0043580:2427-2446 Msa1463670:intron 35.0%
AAATAAACGCTTATGCAAGC+AGG + tig0043580:2464-2483 Msa1463670:CDS 35.0%
TTCACTTCATTGTTGTAGTG+TGG + tig0043580:2653-2672 Msa1463670:intron 35.0%
TCATTGTTGTAGTGTGGAAT+TGG + tig0043580:2659-2678 Msa1463670:intron 35.0%
TGGAGACAGAATTGTTCATA+GGG + tig0043580:2751-2770 Msa1463670:three_prime_UTR 35.0%
TATGCATATTCTTCTGTTGC+TGG - tig0043580:2810-2829 Msa1463670:intergenic 35.0%
GGGAAGAAATAATTAGGTAG+TGG + tig0043580:3076-3095 Msa1463670:three_prime_UTR 35.0%
TCCTAAGTCCTAGTCATTTA+TGG + tig0043580:3177-3196 Msa1463670:three_prime_UTR 35.0%
ACCATAAATGACTAGGACTT+AGG - tig0043580:3181-3200 Msa1463670:intergenic 35.0%
AGATATTGTACCCAACAACC+AGG - tig0043580:833-852 Msa1463670:intergenic 40.0%
AAGACCAACCTTTGAACTAC+TGG + tig0043580:858-877 Msa1463670:CDS 40.0%
! ACTACTGGAATTCATTGGCT+TGG + tig0043580:873-892 Msa1463670:CDS 40.0%
TGGCGAGATATCTCTTTGTT+GGG + tig0043580:896-915 Msa1463670:CDS 40.0%
CAATTCCAGAAAGAGATCGA+TGG - tig0043580:992-1011 Msa1463670:intergenic 40.0%
AGAGAATGAAACCTCAATGG+TGG + tig0043580:1067-1086 Msa1463670:intron 40.0%
ACACTCGTCACATGACATTT+GGG + tig0043580:1100-1119 Msa1463670:intron 40.0%
! GTCACATGACATTTGGGTTT+GGG + tig0043580:1106-1125 Msa1463670:intron 40.0%
! GGAGGAGACTTTTATTCGTT+TGG + tig0043580:1138-1157 Msa1463670:intron 40.0%
! ATCAGCCTATTTTCCGCTAT+TGG + tig0043580:1271-1290 Msa1463670:intron 40.0%
! CTATGCCAATAGCGGAAAAT+AGG - tig0043580:1279-1298 Msa1463670:intergenic 40.0%
! CTATTTTCCGCTATTGGCAT+AGG + tig0043580:1277-1296 Msa1463670:intron 40.0%
AATTCGGTAGTGTCTTTCGT+TGG + tig0043580:1524-1543 Msa1463670:intron 40.0%
! TAAGGGGCAACAATTAGCTT+TGG + tig0043580:1619-1638 Msa1463670:intron 40.0%
!! AAGGGGCAACAATTAGCTTT+GGG + tig0043580:1620-1639 Msa1463670:intron 40.0%
AACACCTAGAGCTTTCCAAA+AGG + tig0043580:1956-1975 Msa1463670:CDS 40.0%
TGAGGAGACAAAAAGACACA+TGG + tig0043580:2029-2048 Msa1463670:intron 40.0%
GAAGTTGTTGGGAGATGAAT+TGG + tig0043580:2095-2114 Msa1463670:CDS 40.0%
! TAGCACCGAGTTCTTCAATT+AGG - tig0043580:2252-2271 Msa1463670:intergenic 40.0%
GATACTTTCAATCGGACACA+AGG - tig0043580:2552-2571 Msa1463670:intergenic 40.0%
GTGGAGACAGAATTGTTCAT+AGG + tig0043580:2750-2769 Msa1463670:three_prime_UTR 40.0%
! GATAGTGGCAACGCATTATT+TGG + tig0043580:3114-3133 Msa1463670:three_prime_UTR 40.0%
CAACGCATTATTTGGAGAAC+AGG + tig0043580:3122-3141 Msa1463670:three_prime_UTR 40.0%
! TGACTAGGACTTAGGAGTAT+TGG - tig0043580:3173-3192 Msa1463670:intergenic 40.0%
AGATATTGTACCCAACAACC+AGG - tig0043580:833-852 Msa1463670:intergenic 40.0%
AAGACCAACCTTTGAACTAC+TGG + tig0043580:858-877 Msa1463670:CDS 40.0%
! ACTACTGGAATTCATTGGCT+TGG + tig0043580:873-892 Msa1463670:CDS 40.0%
TGGCGAGATATCTCTTTGTT+GGG + tig0043580:896-915 Msa1463670:CDS 40.0%
CAATTCCAGAAAGAGATCGA+TGG - tig0043580:992-1011 Msa1463670:intergenic 40.0%
AGAGAATGAAACCTCAATGG+TGG + tig0043580:1067-1086 Msa1463670:intron 40.0%
ACACTCGTCACATGACATTT+GGG + tig0043580:1100-1119 Msa1463670:intron 40.0%
! GTCACATGACATTTGGGTTT+GGG + tig0043580:1106-1125 Msa1463670:intron 40.0%
! GGAGGAGACTTTTATTCGTT+TGG + tig0043580:1138-1157 Msa1463670:intron 40.0%
! ATCAGCCTATTTTCCGCTAT+TGG + tig0043580:1271-1290 Msa1463670:intron 40.0%
! CTATGCCAATAGCGGAAAAT+AGG - tig0043580:1279-1298 Msa1463670:intergenic 40.0%
! CTATTTTCCGCTATTGGCAT+AGG + tig0043580:1277-1296 Msa1463670:intron 40.0%
AATTCGGTAGTGTCTTTCGT+TGG + tig0043580:1524-1543 Msa1463670:intron 40.0%
! TAAGGGGCAACAATTAGCTT+TGG + tig0043580:1619-1638 Msa1463670:intron 40.0%
!! AAGGGGCAACAATTAGCTTT+GGG + tig0043580:1620-1639 Msa1463670:intron 40.0%
AACACCTAGAGCTTTCCAAA+AGG + tig0043580:1956-1975 Msa1463670:CDS 40.0%
TGAGGAGACAAAAAGACACA+TGG + tig0043580:2029-2048 Msa1463670:intron 40.0%
GAAGTTGTTGGGAGATGAAT+TGG + tig0043580:2095-2114 Msa1463670:CDS 40.0%
! TAGCACCGAGTTCTTCAATT+AGG - tig0043580:2252-2271 Msa1463670:intergenic 40.0%
GATACTTTCAATCGGACACA+AGG - tig0043580:2552-2571 Msa1463670:intergenic 40.0%
GTGGAGACAGAATTGTTCAT+AGG + tig0043580:2750-2769 Msa1463670:three_prime_UTR 40.0%
! GATAGTGGCAACGCATTATT+TGG + tig0043580:3114-3133 Msa1463670:three_prime_UTR 40.0%
CAACGCATTATTTGGAGAAC+AGG + tig0043580:3122-3141 Msa1463670:three_prime_UTR 40.0%
! TGACTAGGACTTAGGAGTAT+TGG - tig0043580:3173-3192 Msa1463670:intergenic 40.0%
! CCTTTAGGGAAATGGAGATG+GGG + tig0043580:772-791 Msa1463670:CDS 45.0%
! CTTTAGGGAAATGGAGATGG+GGG + tig0043580:773-792 Msa1463670:CDS 45.0%
!! ACTGGAATTCATTGGCTTGG+TGG + tig0043580:876-895 Msa1463670:CDS 45.0%
GTGGCGAGATATCTCTTTGT+TGG + tig0043580:895-914 Msa1463670:CDS 45.0%
TCTTGCTTAGGGTTGGAACT+TGG - tig0043580:924-943 Msa1463670:intergenic 45.0%
AAGTTCCAACCCTAAGCAAG+AGG + tig0043580:923-942 Msa1463670:CDS 45.0%
ACCAACCAACCTCTTGCTTA+GGG - tig0043580:935-954 Msa1463670:intergenic 45.0%
AACCAACCAACCTCTTGCTT+AGG - tig0043580:936-955 Msa1463670:intergenic 45.0%
GACACTCGTCACATGACATT+TGG + tig0043580:1099-1118 Msa1463670:intron 45.0%
! CGTCACATGACATTTGGGTT+TGG + tig0043580:1105-1124 Msa1463670:intron 45.0%
! GGGTTTGGGATCTTAAATGG+AGG + tig0043580:1120-1139 Msa1463670:intron 45.0%
ACATGGGTACATGACACTAG+TGG + tig0043580:1233-1252 Msa1463670:intron 45.0%
ACCTTAAGATGTCTCGCAGA+CGG - tig0043580:1483-1502 Msa1463670:intergenic 45.0%
! GGTAGTGTCTTTCGTTGGTT+CGG + tig0043580:1529-1548 Msa1463670:intron 45.0%
!! GTAGTGTCTTTCGTTGGTTC+GGG + tig0043580:1530-1549 Msa1463670:intron 45.0%
! GCAATGTCACCCGATCTTTT+TGG + tig0043580:1562-1581 Msa1463670:intron 45.0%
! AACAGAAAGTGTGCATGACG+AGG + tig0043580:2725-2744 Msa1463670:three_prime_UTR 45.0%
!! CTAGGACTTAGGAGTATTGG+TGG - tig0043580:3170-3189 Msa1463670:intergenic 45.0%
! CCTTTAGGGAAATGGAGATG+GGG + tig0043580:772-791 Msa1463670:CDS 45.0%
! CTTTAGGGAAATGGAGATGG+GGG + tig0043580:773-792 Msa1463670:CDS 45.0%
!! ACTGGAATTCATTGGCTTGG+TGG + tig0043580:876-895 Msa1463670:CDS 45.0%
GTGGCGAGATATCTCTTTGT+TGG + tig0043580:895-914 Msa1463670:CDS 45.0%
TCTTGCTTAGGGTTGGAACT+TGG - tig0043580:924-943 Msa1463670:intergenic 45.0%
AAGTTCCAACCCTAAGCAAG+AGG + tig0043580:923-942 Msa1463670:CDS 45.0%
ACCAACCAACCTCTTGCTTA+GGG - tig0043580:935-954 Msa1463670:intergenic 45.0%
AACCAACCAACCTCTTGCTT+AGG - tig0043580:936-955 Msa1463670:intergenic 45.0%
GACACTCGTCACATGACATT+TGG + tig0043580:1099-1118 Msa1463670:intron 45.0%
! CGTCACATGACATTTGGGTT+TGG + tig0043580:1105-1124 Msa1463670:intron 45.0%
! GGGTTTGGGATCTTAAATGG+AGG + tig0043580:1120-1139 Msa1463670:intron 45.0%
ACATGGGTACATGACACTAG+TGG + tig0043580:1233-1252 Msa1463670:intron 45.0%
ACCTTAAGATGTCTCGCAGA+CGG - tig0043580:1483-1502 Msa1463670:intergenic 45.0%
! GGTAGTGTCTTTCGTTGGTT+CGG + tig0043580:1529-1548 Msa1463670:intron 45.0%
!! GTAGTGTCTTTCGTTGGTTC+GGG + tig0043580:1530-1549 Msa1463670:intron 45.0%
! GCAATGTCACCCGATCTTTT+TGG + tig0043580:1562-1581 Msa1463670:intron 45.0%
! AACAGAAAGTGTGCATGACG+AGG + tig0043580:2725-2744 Msa1463670:three_prime_UTR 45.0%
!! CTAGGACTTAGGAGTATTGG+TGG - tig0043580:3170-3189 Msa1463670:intergenic 45.0%
CCCCATCTCCATTTCCCTAA+AGG - tig0043580:775-794 Msa1318580:intergenic 50.0%
! ATGGAGATGGGGGATGCTTT+TGG + tig0043580:783-802 Msa1463670:CDS 50.0%
! CTTTTGGCGGCTCGATACTT+TGG + tig0043580:799-818 Msa1463670:CDS 50.0%
TGTACCCAACAACCAGGACA+TGG - tig0043580:827-846 Msa1463670:intergenic 50.0%
TCCAACCCTAAGCAAGAGGT+TGG + tig0043580:927-946 Msa1463670:CDS 50.0%
ACCAACCTCTTGCTTAGGGT+TGG - tig0043580:931-950 Msa1463670:intergenic 50.0%
! ACCCTAAGCAAGAGGTTGGT+TGG + tig0043580:931-950 Msa1463670:CDS 50.0%
! AGGTTGGTTGGTTCCCGTAT+GGG + tig0043580:943-962 Msa1463670:CDS 50.0%
AGTGGCCATCGATCTCTTTC+TGG + tig0043580:984-1003 Msa1463670:CDS 50.0%
AACCTCAATGGTGGCCTATG+TGG + tig0043580:1076-1095 Msa1463670:intron 50.0%
ACCTCAATGGTGGCCTATGT+GGG + tig0043580:1077-1096 Msa1463670:intron 50.0%
ATGTGACGAGTGTCCCACAT+AGG - tig0043580:1093-1112 Msa1463670:intergenic 50.0%
TGACTCACGTAGATGACGAG+TGG + tig0043580:1210-1229 Msa1463670:intron 50.0%
ACGTAGATGACGAGTGGACA+TGG + tig0043580:1216-1235 Msa1463670:intron 50.0%
CGTAGATGACGAGTGGACAT+GGG + tig0043580:1217-1236 Msa1463670:intron 50.0%
TTGTTGGAGAGACCCTGGTT+GGG - tig0043580:1308-1327 Msa1463670:intergenic 50.0%
ATTGTTGGAGAGACCCTGGT+TGG - tig0043580:1309-1328 Msa1463670:intergenic 50.0%
AACCAGGGTCTCTCCAACAA+TGG + tig0043580:1308-1327 Msa1463670:intron 50.0%
ACCAGGGTCTCTCCAACAAT+GGG + tig0043580:1309-1328 Msa1463670:intron 50.0%
GGATAGCGCAACGACGTAAA+AGG - tig0043580:1419-1438 Msa1463670:intergenic 50.0%
! AGAAAGTGTGCATGACGAGG+AGG + tig0043580:2728-2747 Msa1463670:three_prime_UTR 50.0%
CCCCATCTCCATTTCCCTAA+AGG - tig0043580:775-794 Msa1463670:intergenic 50.0%
! ATGGAGATGGGGGATGCTTT+TGG + tig0043580:783-802 Msa1463670:CDS 50.0%
! CTTTTGGCGGCTCGATACTT+TGG + tig0043580:799-818 Msa1463670:CDS 50.0%
TGTACCCAACAACCAGGACA+TGG - tig0043580:827-846 Msa1463670:intergenic 50.0%
TCCAACCCTAAGCAAGAGGT+TGG + tig0043580:927-946 Msa1463670:CDS 50.0%
ACCAACCTCTTGCTTAGGGT+TGG - tig0043580:931-950 Msa1463670:intergenic 50.0%
! ACCCTAAGCAAGAGGTTGGT+TGG + tig0043580:931-950 Msa1463670:CDS 50.0%
! AGGTTGGTTGGTTCCCGTAT+GGG + tig0043580:943-962 Msa1463670:CDS 50.0%
AGTGGCCATCGATCTCTTTC+TGG + tig0043580:984-1003 Msa1463670:CDS 50.0%
AACCTCAATGGTGGCCTATG+TGG + tig0043580:1076-1095 Msa1463670:intron 50.0%
ACCTCAATGGTGGCCTATGT+GGG + tig0043580:1077-1096 Msa1463670:intron 50.0%
ATGTGACGAGTGTCCCACAT+AGG - tig0043580:1093-1112 Msa1463670:intergenic 50.0%
TGACTCACGTAGATGACGAG+TGG + tig0043580:1210-1229 Msa1463670:intron 50.0%
ACGTAGATGACGAGTGGACA+TGG + tig0043580:1216-1235 Msa1463670:intron 50.0%
CGTAGATGACGAGTGGACAT+GGG + tig0043580:1217-1236 Msa1463670:intron 50.0%
TTGTTGGAGAGACCCTGGTT+GGG - tig0043580:1308-1327 Msa1463670:intergenic 50.0%
ATTGTTGGAGAGACCCTGGT+TGG - tig0043580:1309-1328 Msa1463670:intergenic 50.0%
AACCAGGGTCTCTCCAACAA+TGG + tig0043580:1308-1327 Msa1463670:intron 50.0%
ACCAGGGTCTCTCCAACAAT+GGG + tig0043580:1309-1328 Msa1463670:intron 50.0%
GGATAGCGCAACGACGTAAA+AGG - tig0043580:1419-1438 Msa1463670:intergenic 50.0%
! AGAAAGTGTGCATGACGAGG+AGG + tig0043580:2728-2747 Msa1463670:three_prime_UTR 50.0%
! GAGATGGGGGATGCTTTTGG+CGG + tig0043580:786-805 Msa1463670:CDS 55.0%
GATACTTTGGCGCCATGTCC+TGG + tig0043580:812-831 Msa1463670:CDS 55.0%
! GAGGTTGGTTGGTTCCCGTA+TGG + tig0043580:942-961 Msa1463670:CDS 55.0%
TCCCACATAGGCCACCATTG+AGG - tig0043580:1081-1100 Msa1463670:intergenic 55.0%
GGTGGGACCTATGCCAATAG+CGG - tig0043580:1287-1306 Msa1463670:intergenic 55.0%
TCCCATTGTTGGAGAGACCC+TGG - tig0043580:1313-1332 Msa1463670:intergenic 55.0%
GCCGTCTGCGAGACATCTTA+AGG + tig0043580:1479-1498 Msa1463670:intron 55.0%
!! GTGTCTTTCGTTGGTTCGGG+TGG + tig0043580:1533-1552 Msa1463670:intron 55.0%
!! TCGTTGGTTCGGGTGGCAAT+TGG + tig0043580:1540-1559 Msa1463670:intron 55.0%
AATCGGACACAAGGCGTGTC+GGG - tig0043580:2543-2562 Msa1463670:intergenic 55.0%
CAATCGGACACAAGGCGTGT+CGG - tig0043580:2544-2563 Msa1463670:intergenic 55.0%
AAGTGTGCATGACGAGGAGG+TGG + tig0043580:2731-2750 Msa1463670:three_prime_UTR 55.0%
! GAGATGGGGGATGCTTTTGG+CGG + tig0043580:786-805 Msa1463670:CDS 55.0%
GATACTTTGGCGCCATGTCC+TGG + tig0043580:812-831 Msa1463670:CDS 55.0%
! GAGGTTGGTTGGTTCCCGTA+TGG + tig0043580:942-961 Msa1463670:CDS 55.0%
TCCCACATAGGCCACCATTG+AGG - tig0043580:1081-1100 Msa1463670:intergenic 55.0%
GGTGGGACCTATGCCAATAG+CGG - tig0043580:1287-1306 Msa1463670:intergenic 55.0%
TCCCATTGTTGGAGAGACCC+TGG - tig0043580:1313-1332 Msa1463670:intergenic 55.0%
GCCGTCTGCGAGACATCTTA+AGG + tig0043580:1479-1498 Msa1463670:intron 55.0%
!! GTGTCTTTCGTTGGTTCGGG+TGG + tig0043580:1533-1552 Msa1463670:intron 55.0%
!! TCGTTGGTTCGGGTGGCAAT+TGG + tig0043580:1540-1559 Msa1463670:intron 55.0%
AATCGGACACAAGGCGTGTC+GGG - tig0043580:2543-2562 Msa1463670:intergenic 55.0%
CAATCGGACACAAGGCGTGT+CGG - tig0043580:2544-2563 Msa1463670:intergenic 55.0%
AAGTGTGCATGACGAGGAGG+TGG + tig0043580:2731-2750 Msa1463670:three_prime_UTR 55.0%
TGGCGCCATGTCCTGGTTGT+TGG + tig0043580:819-838 Msa1463670:CDS 60.0%
GGCGCCATGTCCTGGTTGTT+GGG + tig0043580:820-839 Msa1463670:CDS 60.0%
GCATAGGTCCCACCCAACCA+GGG + tig0043580:1293-1312 Msa1463670:intron 60.0%
TGGAGAGACCCTGGTTGGGT+GGG - tig0043580:1304-1323 Msa1463670:intergenic 60.0%
TTGGAGAGACCCTGGTTGGG+TGG - tig0043580:1305-1324 Msa1463670:intergenic 60.0%
TGGCGCCATGTCCTGGTTGT+TGG + tig0043580:819-838 Msa1463670:CDS 60.0%
GGCGCCATGTCCTGGTTGTT+GGG + tig0043580:820-839 Msa1463670:CDS 60.0%
GCATAGGTCCCACCCAACCA+GGG + tig0043580:1293-1312 Msa1463670:intron 60.0%
TGGAGAGACCCTGGTTGGGT+GGG - tig0043580:1304-1323 Msa1463670:intergenic 60.0%
TTGGAGAGACCCTGGTTGGG+TGG - tig0043580:1305-1324 Msa1463670:intergenic 60.0%
GGCATAGGTCCCACCCAACC+AGG + tig0043580:1292-1311 Msa1463670:intron 65.0%
GGCATAGGTCCCACCCAACC+AGG + tig0043580:1292-1311 Msa1463670:intron 65.0%
Chromosome Type Strat End Strand Name
tig0043580 gene 772 3222 772 ID=Msa1463670;Name=Msa1463670
tig0043580 mRNA 772 3222 772 ID=Msa1463670-mRNA-1;Parent=Msa1463670;Name=Msa1463670-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.6|0.5|0.83|1|1|6|524|174
tig0043580 exon 772 1023 772 ID=Msa1463670-mRNA-1:exon:24148;Parent=Msa1463670-mRNA-1
tig0043580 exon 1916 1977 1916 ID=Msa1463670-mRNA-1:exon:24149;Parent=Msa1463670-mRNA-1
tig0043580 exon 2095 2194 2095 ID=Msa1463670-mRNA-1:exon:24150;Parent=Msa1463670-mRNA-1
tig0043580 exon 2283 2323 2283 ID=Msa1463670-mRNA-1:exon:24151;Parent=Msa1463670-mRNA-1
tig0043580 exon 2444 2485 2444 ID=Msa1463670-mRNA-1:exon:24152;Parent=Msa1463670-mRNA-1
tig0043580 exon 2671 3222 2671 ID=Msa1463670-mRNA-1:exon:24153;Parent=Msa1463670-mRNA-1
tig0043580 CDS 772 1023 772 ID=Msa1463670-mRNA-1:cds;Parent=Msa1463670-mRNA-1
tig0043580 CDS 1916 1977 1916 ID=Msa1463670-mRNA-1:cds;Parent=Msa1463670-mRNA-1
tig0043580 CDS 2095 2194 2095 ID=Msa1463670-mRNA-1:cds;Parent=Msa1463670-mRNA-1
tig0043580 CDS 2283 2323 2283 ID=Msa1463670-mRNA-1:cds;Parent=Msa1463670-mRNA-1
tig0043580 CDS 2444 2485 2444 ID=Msa1463670-mRNA-1:cds;Parent=Msa1463670-mRNA-1
tig0043580 CDS 2671 2698 2671 ID=Msa1463670-mRNA-1:cds;Parent=Msa1463670-mRNA-1
tig0043580 three_prime_UTR 2699 3222 2699 ID=Msa1463670-mRNA-1:three_prime_utr;Parent=Msa1463670-mRNA-1
Gene Sequence

>Msa1463670

CCTTTAGGGAAATGGAGATGGGGGATGCTTTTGGCGGCTCGATACTTTGGCGCCATGTCCTGGTTGTTGGGTACAATATCTAACTCAAGACCAACCTTTGAACTACTGGAATTCATTGGCTTGGTGGCGAGATATCTCTTTGTTGGGTTCCAAGTTCCAACCCTAAGCAAGAGGTTGGTTGGTTCCCGTATGGGAGAGTTAAAAATCTTTGGAGTGGCCATCGATCTCTTTCTGGAATTGAAGTTGGATTGGCATCTAATTGAATGTGATATAGACACAACAAAGAAGTTGGAACACCTAGAGCTTTCCAAAAGGAAGTTGTTGGGAGATGAATTGGGTTCATGTGCTATTGACGAATTACAACAGATTGAAAATCAACTCGAACGTAGCTTAAGCAAAATAAGGGCAAGAAAGAATCATTTGCTGAAGGAGCAAATTGAAAAGCTAAAAGAAAGGAAAGGTTGCTTCTTGAAGAAAATAAACGCTTATGCAAGCAGTGTGGAATTGGACAAAATGATTGTTTAA

Protein sequence

>Msa1463670

PLGKWRWGMLLAARYFGAMSWLLGTISNSRPTFELLEFIGLVARYLFVGFQVPTLSKRLVGSRMGELKIFGVAIDLFLELKLDWHLIECDIDTTKKLEHLELSKRKLLGDELGSCAIDELQQIENQLERSLSKIRARKNHLLKEQIEKLKERKGCFLKKINAYASSVELDKMIV*