AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0769920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0769920 MtrunA17_Chr2g0282761 86.319 307 24 3 232 520 35 341 1.59e-170 485
Msa0769920 MtrunA17_Chr2g0282761 82.796 279 20 3 2 252 55 333 1.18e-154 444
Msa0769920 MtrunA17_Chr2g0282741 60.265 302 95 7 232 515 35 329 7.11e-103 312
Msa0769920 MtrunA17_Chr2g0282741 60.854 281 77 6 2 255 55 329 4.97e-99 302
Msa0769920 MtrunA17_Chr4g0040501 56.579 304 114 6 232 518 35 337 7.50e-96 294
Msa0769920 MtrunA17_Chr4g0040501 58.537 287 90 7 2 261 55 339 5.81e-95 292
Msa0769920 MtrunA17_Chr4g0006391 53.465 303 120 5 232 518 35 332 1.50e-89 278
Msa0769920 MtrunA17_Chr4g0006391 55.319 282 102 5 2 261 55 334 1.08e-88 276
Msa0769920 MtrunA17_Chr2g0324921 51.148 305 122 6 231 518 34 328 1.26e-84 265
Msa0769920 MtrunA17_Chr2g0324921 55.515 272 102 4 2 255 55 325 1.80e-83 262
Msa0769920 MtrunA17_Chr3g0138471 41.017 295 150 6 232 515 35 316 8.99e-61 202
Msa0769920 MtrunA17_Chr3g0138471 41.935 279 126 7 3 260 56 319 8.71e-59 197
Msa0769920 MtrunA17_Chr3g0093111 35.379 277 135 6 2 260 54 304 3.29e-45 161
Msa0769920 MtrunA17_Chr3g0093111 34.035 285 135 5 252 518 55 304 1.70e-43 156
Msa0769920 MtrunA17_Chr5g0415751 43.791 153 63 3 126 256 12 163 2.00e-35 130
Msa0769920 MtrunA17_Chr5g0415751 44.681 141 66 2 386 515 12 151 2.83e-35 129
Msa0769920 MtrunA17_Chr3g0124801 38.164 207 109 5 68 262 89 288 9.95e-35 132
Msa0769920 MtrunA17_Chr3g0124801 40.588 170 88 3 355 512 111 279 1.57e-33 129
Msa0769920 MtrunA17_Chr2g0277721 39.683 189 102 4 95 272 79 266 7.57e-33 126
Msa0769920 MtrunA17_Chr2g0277721 40.698 172 91 3 355 515 79 250 1.71e-31 122
Msa0769920 MtrunA17_Chr4g0025401 29.327 208 117 7 67 258 157 350 3.16e-17 84.0
Msa0769920 MtrunA17_Chr4g0025401 27.700 213 113 7 316 512 157 344 8.22e-16 79.7
Msa0769920 MtrunA17_Chr8g0334811 26.629 353 206 13 204 511 3 347 4.70e-17 83.6
Msa0769920 MtrunA17_Chr8g0334811 26.333 300 169 11 2 256 60 352 1.50e-16 82.0
Msa0769920 MtrunA17_Chr2g0322181 28.986 207 113 6 67 255 159 349 2.06e-16 81.3
Msa0769920 MtrunA17_Chr2g0322181 27.962 211 115 6 316 512 159 346 1.17e-15 79.0
Msa0769920 MtrunA17_Chr3g0091351 34.375 96 53 1 160 245 2 97 7.29e-14 67.8
Msa0769920 MtrunA17_Chr3g0091351 34.375 96 53 1 420 505 2 97 7.29e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0769920 AT2G20560.1 55.667 300 116 6 232 518 35 330 5.96e-94 290
Msa0769920 AT2G20560.1 56.842 285 101 5 2 266 55 337 6.38e-93 287
Msa0769920 AT3G08910.1 53.177 299 109 7 232 518 35 314 5.46e-88 274
Msa0769920 AT3G08910.1 54.448 281 102 8 2 268 55 323 6.41e-85 266
Msa0769920 AT5G01390.1 51.485 303 121 6 232 518 35 327 2.18e-86 270
Msa0769920 AT5G01390.1 53.430 277 110 5 2 261 55 329 2.31e-83 262
Msa0769920 AT4G28480.1 54.723 307 119 6 232 518 35 341 6.10e-86 269
Msa0769920 AT4G28480.1 57.295 281 90 5 2 252 55 335 7.00e-83 261
Msa0769920 AT5G25530.2 46.254 307 135 9 232 518 35 331 4.02e-73 236
Msa0769920 AT5G25530.2 46.552 290 114 9 2 261 55 333 1.76e-71 231
Msa0769920 AT5G25530.1 46.441 295 127 9 243 518 57 339 1.96e-71 231
Msa0769920 AT5G25530.1 46.048 291 116 9 1 261 62 341 7.91e-71 230
Msa0769920 AT2G20550.1 47.826 276 90 5 296 518 3 277 4.50e-65 213
Msa0769920 AT2G20550.1 47.619 273 78 6 47 255 3 274 7.42e-64 210
Msa0769920 AT2G20550.2 47.826 276 90 5 296 518 3 277 4.50e-65 213
Msa0769920 AT2G20550.2 47.619 273 78 6 47 255 3 274 7.42e-64 210
Msa0769920 AT1G10350.1 43.750 304 150 6 232 515 35 337 5.64e-65 215
Msa0769920 AT1G10350.1 42.606 284 132 5 2 255 55 337 1.25e-62 209
Msa0769920 AT1G59725.1 47.212 269 122 5 2 255 56 319 2.22e-62 207
Msa0769920 AT1G59725.1 44.554 303 137 6 232 518 35 322 9.03e-62 206
Msa0769920 AT3G47940.1 43.310 284 129 6 2 255 56 337 6.30e-61 204
Msa0769920 AT3G47940.1 42.038 314 141 9 232 515 35 337 1.45e-59 201
Msa0769920 AT5G01390.2 45.185 270 85 5 2 261 55 271 3.82e-57 192
Msa0769920 AT5G01390.2 42.282 298 98 6 232 518 35 269 7.07e-56 189
Msa0769920 AT4G28480.2 44.318 264 93 5 2 252 55 277 7.34e-55 186
Msa0769920 AT4G28480.2 57.447 141 50 1 388 518 143 283 7.92e-43 154
Msa0769920 AT5G01390.3 41.154 260 71 6 2 261 55 232 1.07e-41 149
Msa0769920 AT5G01390.3 38.542 288 84 7 232 518 35 230 2.27e-40 146
Msa0769920 AT5G01390.4 45.029 171 78 5 232 396 35 195 7.26e-31 120
Msa0769920 AT5G01390.4 47.887 142 66 3 2 136 55 195 5.27e-29 115
Msa0769920 AT1G44160.1 38.743 191 104 3 90 269 169 357 1.91e-30 122
Msa0769920 AT1G44160.1 38.122 181 100 2 350 519 169 348 4.65e-29 118
Msa0769920 AT1G11040.1 35.533 197 111 4 83 269 246 436 2.02e-29 120
Msa0769920 AT1G11040.1 36.559 186 103 3 343 518 246 426 2.49e-29 120
Msa0769920 AT3G44110.1 27.541 305 161 8 2 258 60 352 9.38e-23 101
Msa0769920 AT3G44110.1 27.931 290 176 8 252 512 61 346 1.23e-20 94.7
Msa0769920 AT5G22060.1 28.846 312 154 11 2 261 60 355 9.61e-22 98.2
Msa0769920 AT5G22060.1 27.157 313 150 10 252 512 61 347 2.92e-19 90.5
Msa0769920 AT3G44110.2 26.761 284 148 8 2 237 60 331 7.54e-18 85.5
Msa0769920 AT3G44110.2 27.273 275 167 8 252 497 61 331 6.98e-16 79.3

Find 135 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTTCATTTCCTTTCTC+TGG 0.187610 5_2:-39791388 None:intergenic
GGTTGTTCATTTCCTTTCTC+TGG 0.187610 5_2:-39793122 None:intergenic
TGTGAAGGATTCTTGGAAAT+TGG 0.227790 5_2:-39791641 None:intergenic
TGTGAAGGATTCTTGGAAAT+TGG 0.227790 5_2:-39793375 None:intergenic
ACCCTTCTGTGAAGGATTCT+TGG 0.263216 5_2:-39791648 None:intergenic
ACCCTTCTGTGAAGGATTCT+TGG 0.263216 5_2:-39793382 None:intergenic
CTATGAACATTTCTTAGTTC+TGG 0.271872 5_2:-39793464 None:intergenic
AAATATGCCATCTGCACTTC+TGG 0.292239 5_2:-39790701 None:intergenic
AAATATGCCATCTGCACTTC+TGG 0.292239 5_2:-39792435 None:intergenic
AATCCAACCAGGCTGGAAAA+AGG 0.300367 5_2:+39791348 Msa0769920:CDS
AATCCAACCAGGCTGGAAAA+AGG 0.300367 5_2:+39793082 Msa0769920:CDS
ACCTTCTGCCATCATGAGTT+TGG 0.300403 5_2:-39790666 None:intergenic
ACCTTCTGCCATCATGAGTT+TGG 0.300403 5_2:-39792400 None:intergenic
CCATCATGAGTTTGGAAGTA+TGG 0.318658 5_2:-39790658 None:intergenic
CCATCATGAGTTTGGAAGTA+TGG 0.318658 5_2:-39792392 None:intergenic
TCGTGGGTGTCCAGGTCTTT+TGG 0.336631 5_2:+39792542 Msa0769920:intron
CACCTTTCAACTTACTACTT+TGG 0.352258 5_2:+39793275 Msa0769920:CDS
CACCTTCCAACTTACTACTT+TGG 0.365824 5_2:+39791541 Msa0769920:CDS
CTCATTCCCATTCCTCCATA+AGG 0.366245 5_2:-39790748 None:intergenic
CTCATTCCCATTCCTCCATA+AGG 0.366245 5_2:-39792482 None:intergenic
CTTCACAGAAGGGTAATCTT+AGG 0.375432 5_2:+39791657 Msa0769920:CDS
CTTCACAGAAGGGTAATCTT+AGG 0.375432 5_2:+39793391 Msa0769920:CDS
GGGCGGCGGCTGCAGAGGCA+TGG 0.376556 5_2:+39790771 Msa0769920:CDS
GGGCGGCGGCTGCAGAGGCA+TGG 0.376556 5_2:+39792505 Msa0769920:CDS
TGGATCAATTCCATTGTCTA+TGG 0.376750 5_2:-39791585 None:intergenic
TGGATCAATTCCATTGTCTA+TGG 0.376750 5_2:-39793319 None:intergenic
GCCGGCAACCACTTCTTCAT+AGG 0.383100 5_2:-39791609 None:intergenic
GCCGGCAACCACTTCTTCAT+AGG 0.383100 5_2:-39793343 None:intergenic
AGCCTTGAGGAACTTTATAA+AGG 0.387959 5_2:+39790925 Msa0769920:CDS
AGCCTTGAGGAACTTTATAA+AGG 0.387959 5_2:+39792659 Msa0769920:CDS
GTTGTTCATTTCCTTTCTCT+GGG 0.397871 5_2:-39791387 None:intergenic
GTTGTTCATTTCCTTTCTCT+GGG 0.397871 5_2:-39793121 None:intergenic
TTTCAACTTACTACTTTGGA+TGG 0.399032 5_2:+39793279 Msa0769920:CDS
TTCCAACTTACTACTTTGGA+TGG 0.408557 5_2:+39791545 Msa0769920:CDS
GGCGGCGGCTGCAGAGGCAT+GGG 0.419490 5_2:+39790772 Msa0769920:CDS
GGCGGCGGCTGCAGAGGCAT+GGG 0.419490 5_2:+39792506 Msa0769920:CDS
TCAAGCCCTTATGGAGGAAT+GGG 0.422615 5_2:+39790742 Msa0769920:CDS
TCAAGCCCTTATGGAGGAAT+GGG 0.422615 5_2:+39792476 Msa0769920:CDS
ATAAAGTTCCTCAAGGCTGC+AGG 0.424684 5_2:-39790920 None:intergenic
ATAAAGTTCCTCAAGGCTGC+AGG 0.424684 5_2:-39792654 None:intergenic
TCATTCCCATTCCTCCATAA+GGG 0.426221 5_2:-39790747 None:intergenic
TCATTCCCATTCCTCCATAA+GGG 0.426221 5_2:-39792481 None:intergenic
CTCATGATGGCAGAAGGTTT+AGG 0.431407 5_2:+39790671 Msa0769920:CDS
CTCATGATGGCAGAAGGTTT+AGG 0.431407 5_2:+39792405 Msa0769920:CDS
ATGGGAGGTGCCTTGCGTCT+TGG 0.439334 5_2:-39790883 None:intergenic
ATGGGAGGTGCCTTGCGTCT+TGG 0.439334 5_2:-39792617 None:intergenic
TCCTATGAAGAAGTGGTTGC+CGG 0.441137 5_2:+39791608 Msa0769920:CDS
TCCTATGAAGAAGTGGTTGC+CGG 0.441137 5_2:+39793342 Msa0769920:CDS
AGAGCAATTTATGATCAGTA+TGG 0.447319 5_2:+39790586 Msa0769920:CDS
AGAGCAATTTATGATCAGTA+TGG 0.447319 5_2:+39792320 Msa0769920:CDS
GGAATGGGAATGAGGGGCGG+CGG 0.451910 5_2:+39790757 Msa0769920:CDS
GGAATGGGAATGAGGGGCGG+CGG 0.451910 5_2:+39792491 Msa0769920:CDS
ATGAGGGGCGGCGGCTGCAG+AGG 0.461247 5_2:+39790766 Msa0769920:CDS
ATGAGGGGCGGCGGCTGCAG+AGG 0.461247 5_2:+39792500 Msa0769920:CDS
GTTTCAGCATCAACCGTGCT+AGG 0.461527 5_2:-39791701 None:intergenic
GTTTCAGCATCAACCGTGCT+AGG 0.461527 5_2:-39793435 None:intergenic
AATATGCCATCTGCACTTCT+GGG 0.462504 5_2:-39790700 None:intergenic
AATATGCCATCTGCACTTCT+GGG 0.462504 5_2:-39792434 None:intergenic
ATATCTGCAGCAATGACGTT+TGG 0.469933 5_2:-39791409 None:intergenic
ATATCTGCAGCAATGACGTT+TGG 0.469933 5_2:-39793143 None:intergenic
CTTATGGAGGAATGGGAATG+AGG 0.472062 5_2:+39790749 Msa0769920:CDS
CTTATGGAGGAATGGGAATG+AGG 0.472062 5_2:+39792483 Msa0769920:CDS
TTCAAGCCCTTATGGAGGAA+TGG 0.472986 5_2:+39790741 Msa0769920:CDS
TTCAAGCCCTTATGGAGGAA+TGG 0.472986 5_2:+39792475 Msa0769920:CDS
AAAATCACTTTCCCAGAGAA+AGG 0.488986 5_2:+39791376 Msa0769920:CDS
AAAATCACTTTCCCAGAGAA+AGG 0.488986 5_2:+39793110 Msa0769920:CDS
ATTGTTAGTATTTCCTCCAC+AGG 0.497108 5_2:-39791322 None:intergenic
ATTGTTAGTATTTCCTCCAC+AGG 0.497108 5_2:-39793056 None:intergenic
GTCCATCCAAAGTAGTAAGT+TGG 0.505940 5_2:-39791547 None:intergenic
TTCCAAGAATCCTTCACAGA+AGG 0.519442 5_2:+39791646 Msa0769920:CDS
TTCCAAGAATCCTTCACAGA+AGG 0.519442 5_2:+39793380 Msa0769920:CDS
GAGAAATTGCATATGCAAGC+GGG 0.530326 5_2:+39790974 Msa0769920:CDS
GAGAAATTGCATATGCAAGC+GGG 0.530326 5_2:+39792708 Msa0769920:CDS
GGAGGAATGGGAATGAGGGG+CGG 0.532345 5_2:+39790754 Msa0769920:CDS
GGAGGAATGGGAATGAGGGG+CGG 0.532345 5_2:+39792488 Msa0769920:CDS
TCCAAGAATCCTTCACAGAA+GGG 0.533320 5_2:+39791647 Msa0769920:CDS
TCCAAGAATCCTTCACAGAA+GGG 0.533320 5_2:+39793381 Msa0769920:CDS
TTATGGAGGAATGGGAATGA+GGG 0.534716 5_2:+39790750 Msa0769920:CDS
TTATGGAGGAATGGGAATGA+GGG 0.534716 5_2:+39792484 Msa0769920:CDS
AAGAAGTGGTTGCCGGCGAA+AGG 0.544486 5_2:+39791615 Msa0769920:CDS
AAGAAGTGGTTGCCGGCGAA+AGG 0.544486 5_2:+39793349 Msa0769920:CDS
GGAAATTGGTATCCTTTCGC+CGG 0.545834 5_2:-39791627 None:intergenic
GGAAATTGGTATCCTTTCGC+CGG 0.545834 5_2:-39793361 None:intergenic
TGCAGAGGCATGGGCATGAG+AGG 0.547127 5_2:+39790781 Msa0769920:CDS
TGCAGAGGCATGGGCATGAG+AGG 0.547127 5_2:+39792515 Msa0769920:CDS
CACAATGTATTTACAAGACA+AGG 0.557753 5_2:+39791457 Msa0769920:CDS
CACAATGTATTTACAAGACA+AGG 0.557753 5_2:+39793191 Msa0769920:CDS
CAATTGAAATCCAACCAGGC+TGG 0.559519 5_2:+39791341 Msa0769920:CDS
CAATTGAAATCCAACCAGGC+TGG 0.559519 5_2:+39793075 Msa0769920:CDS
AATTCCATTGTCTATGGCAA+TGG 0.561820 5_2:-39791579 None:intergenic
AATTCCATTGTCTATGGCAA+TGG 0.561820 5_2:-39793313 None:intergenic
CCATACTTCCAAACTCATGA+TGG 0.563682 5_2:+39790658 Msa0769920:CDS
CCATACTTCCAAACTCATGA+TGG 0.563682 5_2:+39792392 Msa0769920:CDS
TGATCCATCCTATGAAGAAG+TGG 0.566754 5_2:+39791601 Msa0769920:CDS
TGATCCATCCTATGAAGAAG+TGG 0.566754 5_2:+39793335 Msa0769920:CDS
CTAAGATTACCCTTCTGTGA+AGG 0.575988 5_2:-39791656 None:intergenic
CTAAGATTACCCTTCTGTGA+AGG 0.575988 5_2:-39793390 None:intergenic
TGTCTTGTAAATACATTGTG+AGG 0.577798 5_2:-39791454 None:intergenic
TGTCTTGTAAATACATTGTG+AGG 0.577798 5_2:-39793188 None:intergenic
ATCCAAAGTAGTAAGTTGAA+AGG 0.577808 5_2:-39793277 None:intergenic
GCAACCACTTCTTCATAGGA+TGG 0.578289 5_2:-39791605 None:intergenic
GCAACCACTTCTTCATAGGA+TGG 0.578289 5_2:-39793339 None:intergenic
CTGACCATTGCCATAGACAA+TGG 0.580577 5_2:+39791575 Msa0769920:CDS
CTGACCATTGCCATAGACAA+TGG 0.580577 5_2:+39793309 Msa0769920:CDS
GCTGCATTGTCACCTGCTGT+AGG 0.581153 5_2:-39790634 None:intergenic
GCTGCATTGTCACCTGCTGT+AGG 0.581153 5_2:-39792368 None:intergenic
TCCAAACTCATGATGGCAGA+AGG 0.585224 5_2:+39790665 Msa0769920:CDS
TCCAAACTCATGATGGCAGA+AGG 0.585224 5_2:+39792399 Msa0769920:CDS
TTCAATCCCAGAAGTGCAGA+TGG 0.585321 5_2:+39790694 Msa0769920:CDS
TTCAATCCCAGAAGTGCAGA+TGG 0.585321 5_2:+39792428 Msa0769920:CDS
TACCTTTATAAAGTTCCTCA+AGG 0.588311 5_2:-39790927 None:intergenic
TACCTTTATAAAGTTCCTCA+AGG 0.588311 5_2:-39792661 None:intergenic
CTTACTACTTTGGATGGACG+AGG 0.593609 5_2:+39791551 Msa0769920:CDS
CTTACTACTTTGGATGGACG+AGG 0.593609 5_2:+39793285 Msa0769920:CDS
TTTCAGCATCAACCGTGCTA+GGG 0.595565 5_2:-39791700 None:intergenic
TTTCAGCATCAACCGTGCTA+GGG 0.595565 5_2:-39793434 None:intergenic
CAGCAAAACTGTACCTGTGG+AGG 0.596250 5_2:+39791309 Msa0769920:intron
CAGCAAAACTGTACCTGTGG+AGG 0.596250 5_2:+39793043 Msa0769920:intron
TAAAGTTCCTCAAGGCTGCA+GGG 0.601158 5_2:-39790919 None:intergenic
TAAAGTTCCTCAAGGCTGCA+GGG 0.601158 5_2:-39792653 None:intergenic
ATCCAAAGTAGTAAGTTGGA+AGG 0.613336 5_2:-39791543 None:intergenic
CAACATCACATTCCCTAGCA+CGG 0.615494 5_2:+39791688 Msa0769920:CDS
CAACATCACATTCCCTAGCA+CGG 0.615494 5_2:+39793422 Msa0769920:CDS
TAAATTGCCCTGCAGCCTTG+AGG 0.619632 5_2:+39790912 Msa0769920:CDS
TAAATTGCCCTGCAGCCTTG+AGG 0.619632 5_2:+39792646 Msa0769920:CDS
CTAACAATTGAAATCCAACC+AGG 0.624854 5_2:+39791337 Msa0769920:CDS
CTAACAATTGAAATCCAACC+AGG 0.624854 5_2:+39793071 Msa0769920:CDS
AGAGAAATTGCATATGCAAG+CGG 0.626485 5_2:+39790973 Msa0769920:CDS
AGAGAAATTGCATATGCAAG+CGG 0.626485 5_2:+39792707 Msa0769920:CDS
GAGTCAAGCTCCAAGACGCA+AGG 0.642529 5_2:+39790873 Msa0769920:CDS
GAGTCAAGCTCCAAGACGCA+AGG 0.642529 5_2:+39792607 Msa0769920:CDS
TTGCAGCAAAACTGTACCTG+TGG 0.665223 5_2:+39791306 Msa0769920:intron
TTGCAGCAAAACTGTACCTG+TGG 0.665223 5_2:+39793040 Msa0769920:intron
TATGGAGGAATGGGAATGAG+GGG 0.684119 5_2:+39790751 Msa0769920:CDS
TATGGAGGAATGGGAATGAG+GGG 0.684119 5_2:+39792485 Msa0769920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGTAGTTACAAAGT+TGG - chr5_2:39791174-39791193 None:intergenic 20.0%
!!! TTTCTTCCATTTTATGATTT+TGG + chr5_2:39791845-39791864 Msa0769920:intron 20.0%
!!! TTTTTATTTTGGTAAAACCA+AGG - chr5_2:39792049-39792068 None:intergenic 20.0%
!!! ATTGAAATTTTACTGAATGA+TGG - chr5_2:39792156-39792175 None:intergenic 20.0%
!! ATAAAATGTAGTTACAAAGT+TGG - chr5_2:39791174-39791193 None:intergenic 20.0%
! AGTTTCAATACATTTCTAAC+TGG + chr5_2:39791108-39791127 Msa0769920:intron 25.0%
! CATAGACCAAAATCATAAAA+TGG - chr5_2:39791854-39791873 None:intergenic 25.0%
!!! GCACACAATTCTTTTTATTT+TGG - chr5_2:39792060-39792079 None:intergenic 25.0%
!! ACTTGTTGAGTAATGTTATA+AGG + chr5_2:39792103-39792122 Msa0769920:intron 25.0%
! CTTGTTGAGTAATGTTATAA+GGG + chr5_2:39792104-39792123 Msa0769920:intron 25.0%
!! TCTGACTTAGTATATTGATT+TGG + chr5_2:39792266-39792285 Msa0769920:intron 25.0%
! AGTTTCAATACATTTCTAAC+TGG + chr5_2:39791108-39791127 Msa0769920:intron 25.0%
! TCATAAATTGCTCTCTTTTG+CGG - chr5_2:39790580-39790599 None:intergenic 30.0%
AGAGCAATTTATGATCAGTA+TGG + chr5_2:39790586-39790605 Msa0769920:CDS 30.0%
!! CTGTAGGCATTTCATTTTTA+AGG - chr5_2:39790621-39790640 None:intergenic 30.0%
! ATTTTCGGCAAAGATGTATT+TGG + chr5_2:39790835-39790854 Msa0769920:intron 30.0%
!! CAGGGCAATTTATTTTCAAT+GGG - chr5_2:39790904-39790923 None:intergenic 30.0%
TACCTTTATAAAGTTCCTCA+AGG - chr5_2:39790930-39790949 None:intergenic 30.0%
! TCTTGAGATCTTCATCTTTT+TGG - chr5_2:39790956-39790975 None:intergenic 30.0%
TGATGTGAATTAAAAAGCCA+GGG - chr5_2:39791012-39791031 None:intergenic 30.0%
TTGATGTGAATTAAAAAGCC+AGG - chr5_2:39791013-39791032 None:intergenic 30.0%
TTCAATACATTTCTAACTGG+CGG + chr5_2:39791111-39791130 Msa0769920:intron 30.0%
TGTCTTGTAAATACATTGTG+AGG - chr5_2:39791457-39791476 None:intergenic 30.0%
CACAATGTATTTACAAGACA+AGG + chr5_2:39791457-39791476 Msa0769920:CDS 30.0%
TACAAGACAAGGTAATGATT+TGG + chr5_2:39791468-39791487 Msa0769920:intron 30.0%
CTATGAACATTTCTTAGTTC+TGG - chr5_2:39791733-39791752 None:intergenic 30.0%
GTAACTAGGATCAATTTAAG+AGG - chr5_2:39791989-39792008 None:intergenic 30.0%
ATTGATCCTAGTTACTTCAA+AGG + chr5_2:39791994-39792013 Msa0769920:intron 30.0%
!! GAAAATCCTTTGAAGTAACT+AGG - chr5_2:39792003-39792022 None:intergenic 30.0%
GATGGAAAATAAGTACAACA+AGG - chr5_2:39792138-39792157 None:intergenic 30.0%
!! AGTATATTGATTTGGCTTCA+TGG + chr5_2:39792274-39792293 Msa0769920:intron 30.0%
! TCATAAATTGCTCTCTTTTG+CGG - chr5_2:39790580-39790599 None:intergenic 30.0%
AGAGCAATTTATGATCAGTA+TGG + chr5_2:39790586-39790605 Msa0769920:CDS 30.0%
!! CTGTAGGCATTTCATTTTTA+AGG - chr5_2:39790621-39790640 None:intergenic 30.0%
! ATTTTCGGCAAAGATGTATT+TGG + chr5_2:39790835-39790854 Msa0769920:intron 30.0%
!! CAGGGCAATTTATTTTCAAT+GGG - chr5_2:39790904-39790923 None:intergenic 30.0%
TACCTTTATAAAGTTCCTCA+AGG - chr5_2:39790930-39790949 None:intergenic 30.0%
! TCTTGAGATCTTCATCTTTT+TGG - chr5_2:39790956-39790975 None:intergenic 30.0%
TGATGTGAATTAAAAAGCCA+GGG - chr5_2:39791012-39791031 None:intergenic 30.0%
TTGATGTGAATTAAAAAGCC+AGG - chr5_2:39791013-39791032 None:intergenic 30.0%
TTCAATACATTTCTAACTGG+CGG + chr5_2:39791111-39791130 Msa0769920:intron 30.0%
TGTCTTGTAAATACATTGTG+AGG - chr5_2:39791457-39791476 None:intergenic 30.0%
CACAATGTATTTACAAGACA+AGG + chr5_2:39791457-39791476 Msa0769920:CDS 30.0%
TACAAGACAAGGTAATGATT+TGG + chr5_2:39791468-39791487 Msa0769920:intron 30.0%
! ATCCAAAGTAGTAAGTTGAA+AGG - chr5_2:39793280-39793299 None:intergenic 30.0%
TTTCAACTTACTACTTTGGA+TGG + chr5_2:39793279-39793298 Msa0769920:CDS 30.0%
AAAAATGAAATGCCTACAGC+AGG + chr5_2:39790622-39790641 Msa0769920:CDS 35.0%
! GGCATATTTGCAGAAGTTTT+TGG + chr5_2:39790715-39790734 Msa0769920:CDS 35.0%
! AGGTCTTTTGGCGATATTTT+CGG + chr5_2:39790820-39790839 Msa0769920:intron 35.0%
!! GGCAATTTATTTTCAATGGG+AGG - chr5_2:39790901-39790920 None:intergenic 35.0%
!! GCAGGGCAATTTATTTTCAA+TGG - chr5_2:39790905-39790924 None:intergenic 35.0%
AGCCTTGAGGAACTTTATAA+AGG + chr5_2:39790925-39790944 Msa0769920:CDS 35.0%
AGAGAAATTGCATATGCAAG+CGG + chr5_2:39790973-39790992 Msa0769920:CDS 35.0%
GATGTGAATTAAAAAGCCAG+GGG - chr5_2:39791011-39791030 None:intergenic 35.0%
!!! GCAGAATGAGAGTTTTTTGT+TGG + chr5_2:39791069-39791088 Msa0769920:intron 35.0%
ACTTGTAGACACACATGAAA+GGG - chr5_2:39791252-39791271 None:intergenic 35.0%
TACTTGTAGACACACATGAA+AGG - chr5_2:39791253-39791272 None:intergenic 35.0%
ATTGTTAGTATTTCCTCCAC+AGG - chr5_2:39791325-39791344 None:intergenic 35.0%
CTAACAATTGAAATCCAACC+AGG + chr5_2:39791337-39791356 Msa0769920:CDS 35.0%
AAAATCACTTTCCCAGAGAA+AGG + chr5_2:39791376-39791395 Msa0769920:CDS 35.0%
GTTGTTCATTTCCTTTCTCT+GGG - chr5_2:39791390-39791409 None:intergenic 35.0%
CACAAGATATTACTTGCAGA+AGG + chr5_2:39791497-39791516 Msa0769920:intron 35.0%
! ATCCAAAGTAGTAAGTTGGA+AGG - chr5_2:39791546-39791565 None:intergenic 35.0%
TTCCAACTTACTACTTTGGA+TGG + chr5_2:39791545-39791564 Msa0769920:CDS 35.0%
AATTCCATTGTCTATGGCAA+TGG - chr5_2:39791582-39791601 None:intergenic 35.0%
TGGATCAATTCCATTGTCTA+TGG - chr5_2:39791588-39791607 None:intergenic 35.0%
TGTGAAGGATTCTTGGAAAT+TGG - chr5_2:39791644-39791663 None:intergenic 35.0%
TACTATACACAAGATGCACT+TGG - chr5_2:39791781-39791800 None:intergenic 35.0%
AACATGGATAGACAAAGAGT+TGG - chr5_2:39792205-39792224 None:intergenic 35.0%
TCTTTGTCTATCCATGTTGT+GGG + chr5_2:39792207-39792226 Msa0769920:intron 35.0%
CAGATTCTGTGAACATTTCA+TGG - chr5_2:39792250-39792269 None:intergenic 35.0%
!! ATATTGATTTGGCTTCATGG+AGG + chr5_2:39792277-39792296 Msa0769920:intron 35.0%
AAAAATGAAATGCCTACAGC+AGG + chr5_2:39790622-39790641 Msa0769920:CDS 35.0%
! GGCATATTTGCAGAAGTTTT+TGG + chr5_2:39790715-39790734 Msa0769920:CDS 35.0%
! AGGTCTTTTGGCGATATTTT+CGG + chr5_2:39790820-39790839 Msa0769920:intron 35.0%
!! GGCAATTTATTTTCAATGGG+AGG - chr5_2:39790901-39790920 None:intergenic 35.0%
!! GCAGGGCAATTTATTTTCAA+TGG - chr5_2:39790905-39790924 None:intergenic 35.0%
AGCCTTGAGGAACTTTATAA+AGG + chr5_2:39790925-39790944 Msa0769920:CDS 35.0%
AGAGAAATTGCATATGCAAG+CGG + chr5_2:39790973-39790992 Msa0769920:CDS 35.0%
GATGTGAATTAAAAAGCCAG+GGG - chr5_2:39791011-39791030 None:intergenic 35.0%
!!! GCAGAATGAGAGTTTTTTGT+TGG + chr5_2:39791069-39791088 Msa0769920:intron 35.0%
ACTTGTAGACACACATGAAA+GGG - chr5_2:39791252-39791271 None:intergenic 35.0%
TACTTGTAGACACACATGAA+AGG - chr5_2:39791253-39791272 None:intergenic 35.0%
ATTGTTAGTATTTCCTCCAC+AGG - chr5_2:39791325-39791344 None:intergenic 35.0%
CTAACAATTGAAATCCAACC+AGG + chr5_2:39791337-39791356 Msa0769920:CDS 35.0%
AAAATCACTTTCCCAGAGAA+AGG + chr5_2:39791376-39791395 Msa0769920:CDS 35.0%
GTTGTTCATTTCCTTTCTCT+GGG - chr5_2:39791390-39791409 None:intergenic 35.0%
CACAAGATATTACTTGCAGA+AGG + chr5_2:39791497-39791516 Msa0769920:intron 35.0%
CACCTTTCAACTTACTACTT+TGG + chr5_2:39793275-39793294 Msa0769920:CDS 35.0%
AATTCCATTGTCTATGGCAA+TGG - chr5_2:39791582-39791601 None:intergenic 35.0%
TGGATCAATTCCATTGTCTA+TGG - chr5_2:39791588-39791607 None:intergenic 35.0%
TGTGAAGGATTCTTGGAAAT+TGG - chr5_2:39791644-39791663 None:intergenic 35.0%
CCATCATGAGTTTGGAAGTA+TGG - chr5_2:39790661-39790680 None:intergenic 40.0%
CCATACTTCCAAACTCATGA+TGG + chr5_2:39790658-39790677 Msa0769920:CDS 40.0%
AATATGCCATCTGCACTTCT+GGG - chr5_2:39790703-39790722 None:intergenic 40.0%
AAATATGCCATCTGCACTTC+TGG - chr5_2:39790704-39790723 None:intergenic 40.0%
!!! TTTGGCTTTTCAAGCCCTTA+TGG + chr5_2:39790733-39790752 Msa0769920:CDS 40.0%
TCATTCCCATTCCTCCATAA+GGG - chr5_2:39790750-39790769 None:intergenic 40.0%
TTATGGAGGAATGGGAATGA+GGG + chr5_2:39790750-39790769 Msa0769920:CDS 40.0%
GAAAATATCGCCAAAAGACC+TGG - chr5_2:39790821-39790840 None:intergenic 40.0%
GAGAAATTGCATATGCAAGC+GGG + chr5_2:39790974-39790993 Msa0769920:CDS 40.0%
TAGACACACATGAAAGGGAA+CGG - chr5_2:39791247-39791266 None:intergenic 40.0%
! TTTTGCTGCAAACACACATG+CGG - chr5_2:39791297-39791316 None:intergenic 40.0%
GGTTGTTCATTTCCTTTCTC+TGG - chr5_2:39791391-39791410 None:intergenic 40.0%
ATATCTGCAGCAATGACGTT+TGG - chr5_2:39791412-39791431 None:intergenic 40.0%
CACCTTCCAACTTACTACTT+TGG + chr5_2:39791541-39791560 Msa0769920:CDS 40.0%
GTCCATCCAAAGTAGTAAGT+TGG - chr5_2:39791550-39791569 None:intergenic 40.0%
TGATCCATCCTATGAAGAAG+TGG + chr5_2:39791601-39791620 Msa0769920:CDS 40.0%
TTCCAAGAATCCTTCACAGA+AGG + chr5_2:39791646-39791665 Msa0769920:CDS 40.0%
TCCAAGAATCCTTCACAGAA+GGG + chr5_2:39791647-39791666 Msa0769920:CDS 40.0%
CTAAGATTACCCTTCTGTGA+AGG - chr5_2:39791659-39791678 None:intergenic 40.0%
CTTCACAGAAGGGTAATCTT+AGG + chr5_2:39791657-39791676 Msa0769920:CDS 40.0%
ACACAAGATGCACTTGGTAA+TGG - chr5_2:39791775-39791794 None:intergenic 40.0%
CTCTTTGTCTATCCATGTTG+TGG + chr5_2:39792206-39792225 Msa0769920:intron 40.0%
CTTTGTCTATCCATGTTGTG+GGG + chr5_2:39792208-39792227 Msa0769920:intron 40.0%
CCATCATGAGTTTGGAAGTA+TGG - chr5_2:39790661-39790680 None:intergenic 40.0%
CCATACTTCCAAACTCATGA+TGG + chr5_2:39790658-39790677 Msa0769920:CDS 40.0%
AATATGCCATCTGCACTTCT+GGG - chr5_2:39790703-39790722 None:intergenic 40.0%
AAATATGCCATCTGCACTTC+TGG - chr5_2:39790704-39790723 None:intergenic 40.0%
!!! TTTGGCTTTTCAAGCCCTTA+TGG + chr5_2:39790733-39790752 Msa0769920:CDS 40.0%
TCATTCCCATTCCTCCATAA+GGG - chr5_2:39790750-39790769 None:intergenic 40.0%
TTATGGAGGAATGGGAATGA+GGG + chr5_2:39790750-39790769 Msa0769920:CDS 40.0%
GAAAATATCGCCAAAAGACC+TGG - chr5_2:39790821-39790840 None:intergenic 40.0%
GAGAAATTGCATATGCAAGC+GGG + chr5_2:39790974-39790993 Msa0769920:CDS 40.0%
TAGACACACATGAAAGGGAA+CGG - chr5_2:39791247-39791266 None:intergenic 40.0%
! TTTTGCTGCAAACACACATG+CGG - chr5_2:39791297-39791316 None:intergenic 40.0%
GGTTGTTCATTTCCTTTCTC+TGG - chr5_2:39791391-39791410 None:intergenic 40.0%
ATATCTGCAGCAATGACGTT+TGG - chr5_2:39791412-39791431 None:intergenic 40.0%
TGATCCATCCTATGAAGAAG+TGG + chr5_2:39791601-39791620 Msa0769920:CDS 40.0%
TTCCAAGAATCCTTCACAGA+AGG + chr5_2:39791646-39791665 Msa0769920:CDS 40.0%
TCCAAGAATCCTTCACAGAA+GGG + chr5_2:39791647-39791666 Msa0769920:CDS 40.0%
CTAAGATTACCCTTCTGTGA+AGG - chr5_2:39791659-39791678 None:intergenic 40.0%
CTTCACAGAAGGGTAATCTT+AGG + chr5_2:39791657-39791676 Msa0769920:CDS 40.0%
TCCAAACTCATGATGGCAGA+AGG + chr5_2:39790665-39790684 Msa0769920:CDS 45.0%
ACCTTCTGCCATCATGAGTT+TGG - chr5_2:39790669-39790688 None:intergenic 45.0%
CTCATGATGGCAGAAGGTTT+AGG + chr5_2:39790671-39790690 Msa0769920:CDS 45.0%
! TTCAATCCCAGAAGTGCAGA+TGG + chr5_2:39790694-39790713 Msa0769920:CDS 45.0%
TTCAAGCCCTTATGGAGGAA+TGG + chr5_2:39790741-39790760 Msa0769920:CDS 45.0%
TCAAGCCCTTATGGAGGAAT+GGG + chr5_2:39790742-39790761 Msa0769920:CDS 45.0%
CTCATTCCCATTCCTCCATA+AGG - chr5_2:39790751-39790770 None:intergenic 45.0%
CTTATGGAGGAATGGGAATG+AGG + chr5_2:39790749-39790768 Msa0769920:CDS 45.0%
TATGGAGGAATGGGAATGAG+GGG + chr5_2:39790751-39790770 Msa0769920:CDS 45.0%
TAAAGTTCCTCAAGGCTGCA+GGG - chr5_2:39790922-39790941 None:intergenic 45.0%
ATAAAGTTCCTCAAGGCTGC+AGG - chr5_2:39790923-39790942 None:intergenic 45.0%
AGACACACATGAAAGGGAAC+GGG - chr5_2:39791246-39791265 None:intergenic 45.0%
TTTGCTGCAAACACACATGC+GGG - chr5_2:39791296-39791315 None:intergenic 45.0%
TTGCAGCAAAACTGTACCTG+TGG + chr5_2:39791306-39791325 Msa0769920:intron 45.0%
CAATTGAAATCCAACCAGGC+TGG + chr5_2:39791341-39791360 Msa0769920:CDS 45.0%
AATCCAACCAGGCTGGAAAA+AGG + chr5_2:39791348-39791367 Msa0769920:CDS 45.0%
ATCCAACCAGGCTGGAAAAA+GGG + chr5_2:39791349-39791368 Msa0769920:CDS 45.0%
CTTACTACTTTGGATGGACG+AGG + chr5_2:39791551-39791570 Msa0769920:CDS 45.0%
CTGACCATTGCCATAGACAA+TGG + chr5_2:39791575-39791594 Msa0769920:CDS 45.0%
GCAACCACTTCTTCATAGGA+TGG - chr5_2:39791608-39791627 None:intergenic 45.0%
TCCTATGAAGAAGTGGTTGC+CGG + chr5_2:39791608-39791627 Msa0769920:CDS 45.0%
GGAAATTGGTATCCTTTCGC+CGG - chr5_2:39791630-39791649 None:intergenic 45.0%
ACCCTTCTGTGAAGGATTCT+TGG - chr5_2:39791651-39791670 None:intergenic 45.0%
CAACATCACATTCCCTAGCA+CGG + chr5_2:39791688-39791707 Msa0769920:CDS 45.0%
TTTCAGCATCAACCGTGCTA+GGG - chr5_2:39791703-39791722 None:intergenic 45.0%
GTTGCACGTAGATGATACCT+TGG + chr5_2:39792029-39792048 Msa0769920:intron 45.0%
TCTATCCATGTTGTGGGGAA+TGG + chr5_2:39792213-39792232 Msa0769920:intron 45.0%
CTATCCATGTTGTGGGGAAT+GGG + chr5_2:39792214-39792233 Msa0769920:intron 45.0%
TATCCATGTTGTGGGGAATG+GGG + chr5_2:39792215-39792234 Msa0769920:intron 45.0%
TCCAAACTCATGATGGCAGA+AGG + chr5_2:39790665-39790684 Msa0769920:CDS 45.0%
ACCTTCTGCCATCATGAGTT+TGG - chr5_2:39790669-39790688 None:intergenic 45.0%
CTCATGATGGCAGAAGGTTT+AGG + chr5_2:39790671-39790690 Msa0769920:CDS 45.0%
! TTCAATCCCAGAAGTGCAGA+TGG + chr5_2:39790694-39790713 Msa0769920:CDS 45.0%
TTCAAGCCCTTATGGAGGAA+TGG + chr5_2:39790741-39790760 Msa0769920:CDS 45.0%
TCAAGCCCTTATGGAGGAAT+GGG + chr5_2:39790742-39790761 Msa0769920:CDS 45.0%
CTCATTCCCATTCCTCCATA+AGG - chr5_2:39790751-39790770 None:intergenic 45.0%
CTTATGGAGGAATGGGAATG+AGG + chr5_2:39790749-39790768 Msa0769920:CDS 45.0%
TATGGAGGAATGGGAATGAG+GGG + chr5_2:39790751-39790770 Msa0769920:CDS 45.0%
TAAAGTTCCTCAAGGCTGCA+GGG - chr5_2:39790922-39790941 None:intergenic 45.0%
ATAAAGTTCCTCAAGGCTGC+AGG - chr5_2:39790923-39790942 None:intergenic 45.0%
AGACACACATGAAAGGGAAC+GGG - chr5_2:39791246-39791265 None:intergenic 45.0%
TTTGCTGCAAACACACATGC+GGG - chr5_2:39791296-39791315 None:intergenic 45.0%
TTGCAGCAAAACTGTACCTG+TGG + chr5_2:39791306-39791325 Msa0769920:intron 45.0%
CAATTGAAATCCAACCAGGC+TGG + chr5_2:39791341-39791360 Msa0769920:CDS 45.0%
AATCCAACCAGGCTGGAAAA+AGG + chr5_2:39791348-39791367 Msa0769920:CDS 45.0%
ATCCAACCAGGCTGGAAAAA+GGG + chr5_2:39791349-39791368 Msa0769920:CDS 45.0%
CTTACTACTTTGGATGGACG+AGG + chr5_2:39791551-39791570 Msa0769920:CDS 45.0%
CTGACCATTGCCATAGACAA+TGG + chr5_2:39791575-39791594 Msa0769920:CDS 45.0%
GCAACCACTTCTTCATAGGA+TGG - chr5_2:39791608-39791627 None:intergenic 45.0%
TCCTATGAAGAAGTGGTTGC+CGG + chr5_2:39791608-39791627 Msa0769920:CDS 45.0%
GGAAATTGGTATCCTTTCGC+CGG - chr5_2:39791630-39791649 None:intergenic 45.0%
ACCCTTCTGTGAAGGATTCT+TGG - chr5_2:39791651-39791670 None:intergenic 45.0%
CAACATCACATTCCCTAGCA+CGG + chr5_2:39791688-39791707 Msa0769920:CDS 45.0%
TTTCAGCATCAACCGTGCTA+GGG - chr5_2:39791703-39791722 None:intergenic 45.0%
!! GGCTTTTCAAGCCCTTATGG+AGG + chr5_2:39790736-39790755 Msa0769920:CDS 50.0%
TAAATTGCCCTGCAGCCTTG+AGG + chr5_2:39790912-39790931 Msa0769920:CDS 50.0%
CAGCAAAACTGTACCTGTGG+AGG + chr5_2:39791309-39791328 Msa0769920:intron 50.0%
! TTCCCTTTTTCCAGCCTGGT+TGG - chr5_2:39791354-39791373 None:intergenic 50.0%
! TTCGTTCCCTTTTTCCAGCC+TGG - chr5_2:39791358-39791377 None:intergenic 50.0%
GTTTCAGCATCAACCGTGCT+AGG - chr5_2:39791704-39791723 None:intergenic 50.0%
!! GGCTTTTCAAGCCCTTATGG+AGG + chr5_2:39790736-39790755 Msa0769920:CDS 50.0%
TAAATTGCCCTGCAGCCTTG+AGG + chr5_2:39790912-39790931 Msa0769920:CDS 50.0%
CAGCAAAACTGTACCTGTGG+AGG + chr5_2:39791309-39791328 Msa0769920:intron 50.0%
! TTCCCTTTTTCCAGCCTGGT+TGG - chr5_2:39791354-39791373 None:intergenic 50.0%
! TTCGTTCCCTTTTTCCAGCC+TGG - chr5_2:39791358-39791377 None:intergenic 50.0%
GTTTCAGCATCAACCGTGCT+AGG - chr5_2:39791704-39791723 None:intergenic 50.0%
GCTGCATTGTCACCTGCTGT+AGG - chr5_2:39790637-39790656 None:intergenic 55.0%
! TCGTGGGTGTCCAGGTCTTT+TGG + chr5_2:39790808-39790827 Msa0769920:intron 55.0%
GAGTCAAGCTCCAAGACGCA+AGG + chr5_2:39790873-39790892 Msa0769920:CDS 55.0%
GCCGGCAACCACTTCTTCAT+AGG - chr5_2:39791612-39791631 None:intergenic 55.0%
AAGAAGTGGTTGCCGGCGAA+AGG + chr5_2:39791615-39791634 Msa0769920:CDS 55.0%
CATCCCCATTCCCCACAACA+TGG - chr5_2:39792221-39792240 None:intergenic 55.0%
GCTGCATTGTCACCTGCTGT+AGG - chr5_2:39790637-39790656 None:intergenic 55.0%
! TCGTGGGTGTCCAGGTCTTT+TGG + chr5_2:39790808-39790827 Msa0769920:intron 55.0%
GAGTCAAGCTCCAAGACGCA+AGG + chr5_2:39790873-39790892 Msa0769920:CDS 55.0%
GCCGGCAACCACTTCTTCAT+AGG - chr5_2:39791612-39791631 None:intergenic 55.0%
AAGAAGTGGTTGCCGGCGAA+AGG + chr5_2:39791615-39791634 Msa0769920:CDS 55.0%
GGAGGAATGGGAATGAGGGG+CGG + chr5_2:39790754-39790773 Msa0769920:CDS 60.0%
! TGCAGAGGCATGGGCATGAG+AGG + chr5_2:39790781-39790800 Msa0769920:CDS 60.0%
TGGGCATGAGAGGTCAGTCG+TGG + chr5_2:39790791-39790810 Msa0769920:intron 60.0%
GGGCATGAGAGGTCAGTCGT+GGG + chr5_2:39790792-39790811 Msa0769920:intron 60.0%
!! ATGGGAGGTGCCTTGCGTCT+TGG - chr5_2:39790886-39790905 None:intergenic 60.0%
GCGGGTAAATGCTCTTCCCC+TGG + chr5_2:39790992-39791011 Msa0769920:intron 60.0%
GGAGGAATGGGAATGAGGGG+CGG + chr5_2:39790754-39790773 Msa0769920:CDS 60.0%
! TGCAGAGGCATGGGCATGAG+AGG + chr5_2:39790781-39790800 Msa0769920:CDS 60.0%
TGGGCATGAGAGGTCAGTCG+TGG + chr5_2:39790791-39790810 Msa0769920:intron 60.0%
GGGCATGAGAGGTCAGTCGT+GGG + chr5_2:39790792-39790811 Msa0769920:intron 60.0%
!! ATGGGAGGTGCCTTGCGTCT+TGG - chr5_2:39790886-39790905 None:intergenic 60.0%
GCGGGTAAATGCTCTTCCCC+TGG + chr5_2:39790992-39791011 Msa0769920:intron 60.0%
GGAATGGGAATGAGGGGCGG+CGG + chr5_2:39790757-39790776 Msa0769920:CDS 65.0%
GAGGTCAGTCGTGGGTGTCC+AGG + chr5_2:39790800-39790819 Msa0769920:intron 65.0%
GGAATGGGAATGAGGGGCGG+CGG + chr5_2:39790757-39790776 Msa0769920:CDS 65.0%
GAGGTCAGTCGTGGGTGTCC+AGG + chr5_2:39790800-39790819 Msa0769920:intron 65.0%
ATGAGGGGCGGCGGCTGCAG+AGG + chr5_2:39790766-39790785 Msa0769920:CDS 75.0%
! GGCGGCGGCTGCAGAGGCAT+GGG + chr5_2:39790772-39790791 Msa0769920:CDS 75.0%
ATGAGGGGCGGCGGCTGCAG+AGG + chr5_2:39790766-39790785 Msa0769920:CDS 75.0%
! GGCGGCGGCTGCAGAGGCAT+GGG + chr5_2:39790772-39790791 Msa0769920:CDS 75.0%
! GGGCGGCGGCTGCAGAGGCA+TGG + chr5_2:39790771-39790790 Msa0769920:CDS 80.0%
! GGGCGGCGGCTGCAGAGGCA+TGG + chr5_2:39790771-39790790 Msa0769920:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 39790559 39793473 39790559 ID=Msa0769920;Name=Msa0769920
chr5_2 mRNA 39790559 39793473 39790559 ID=Msa0769920-mRNA-1;Parent=Msa0769920;Name=Msa0769920-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.28|0|1|0.57|0.37|8|0|520
chr5_2 exon 39790559 39790802 39790559 ID=Msa0769920-mRNA-1:exon:12713;Parent=Msa0769920-mRNA-1
chr5_2 exon 39790848 39790995 39790848 ID=Msa0769920-mRNA-1:exon:12714;Parent=Msa0769920-mRNA-1
chr5_2 exon 39791312 39791478 39791312 ID=Msa0769920-mRNA-1:exon:12715;Parent=Msa0769920-mRNA-1
chr5_2 exon 39791516 39791709 39791516 ID=Msa0769920-mRNA-1:exon:12716;Parent=Msa0769920-mRNA-1
chr5_2 exon 39792299 39792543 39792299 ID=Msa0769920-mRNA-1:exon:12717;Parent=Msa0769920-mRNA-1
chr5_2 exon 39792556 39792729 39792556 ID=Msa0769920-mRNA-1:exon:12718;Parent=Msa0769920-mRNA-1
chr5_2 exon 39793046 39793212 39793046 ID=Msa0769920-mRNA-1:exon:12719;Parent=Msa0769920-mRNA-1
chr5_2 exon 39793250 39793473 39793250 ID=Msa0769920-mRNA-1:exon:12720;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39790559 39790802 39790559 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39790848 39790995 39790848 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39791312 39791478 39791312 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39791516 39791709 39791516 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39792299 39792543 39792299 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39792556 39792729 39792556 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39793046 39793212 39793046 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
chr5_2 CDS 39793250 39793473 39793250 ID=Msa0769920-mRNA-1:cds;Parent=Msa0769920-mRNA-1
Gene Sequence

>Msa0769920

ATGGAGGTTCTAAATGATCCGCAAAAGAGAGCAATTTATGATCAGTATGGAGAGAGCAGCCTTAAAAATGAAATGCCTACAGCAGGTGACAATGCAGCTCCATACTTCCAAACTCATGATGGCAGAAGGTTTAGGTTCAATCCCAGAAGTGCAGATGGCATATTTGCAGAAGTTTTTGGCTTTTCAAGCCCTTATGGAGGAATGGGAATGAGGGGCGGCGGCTGCAGAGGCATGGGCATGAGAGATGTATTTGGAGAAAGCAGACAAACGAGTCAAGCTCCAAGACGCAAGGCACCTCCCATTGAAAATAAATTGCCCTGCAGCCTTGAGGAACTTTATAAAGGTACTACCAAAAAGATGAAGATCTCAAGAGAAATTGCATATGCAAGCGGCAAAACTGTACCTGTGGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACGAAAATCACTTTCCCAGAGAAAGGAAATGAACAACCAAACGTCATTGCTGCAGATATCGTATTCATTATTGACGAGAAACCTCACAATGTATTTACAAGACAAGAAGGAGAAGCTCTAAGCAGAAGCTACACCTTCCAACTTACTACTTTGGATGGACGAGGTCTGACCATTGCCATAGACAATGGAATTGATCCATCCTATGAAGAAGTGGTTGCCGGCGAAAGGATACCAATTTCCAAGAATCCTTCACAGAAGGGTAATCTTAGGATCAAATTCAACATCACATTCCCTAGCACGGTTCTAAATGATCCGCAAAAGAGAGCAATTTATGATCAGTATGGAGAGAGCAGCCTTAAAAATGAAATGCCTACAGCAGGTGACAATGCAGCTCCATACTTCCAAACTCATGATGGCAGAAGGTTTAGGTTCAATCCCAGAAGTGCAGATGGCATATTTGCAGAAGTTTTTGGCTTTTCAAGCCCTTATGGAGGAATGGGAATGAGGGGCGGCGGCTGCAGAGGCATGGGCATGAGAGGTCAGTCGTCTTTTGGCGATATTTTCGGCAAAGATGTATTTGGAGAAAGCAGACAAACGAGTCAAGCTCCAAGACGCAAGGCACCTCCCATTGAAAATAAATTGCCCTGCAGCCTTGAGGAACTTTATAAAGGTACTACCAAAAAGATGAAGATCTCAAGAGAAATTGCATATGCAAGCGGCAAAACTGTACCTGTGGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACGAAAATCACTTTCCCAGAGAAAGGAAATGAACAACCAAACGTCATTGCTGCAGATATCGTATTCATTATTGACGAGAAACCTCACAATGTATTTACAAGACAAGAAGGAGAAGCTCTAAGCAGAAGCTACACCTTTCAACTTACTACTTTGGATGGACGAGGTCTGACCATTGCCATAGACAATGGAATTGATCCATCCTATGAAGAAGTGGTTGCCGGCGAAAGGATACCAATTTCCAAGAATCCTTCACAGAAGGGTAATCTTAGGATCAAATTCAACATCACATTCCCTAGCACGGTTGATGCTGAAACAGAAAGCCAGAACTAA

Protein sequence

>Msa0769920

MEVLNDPQKRAIYDQYGESSLKNEMPTAGDNAAPYFQTHDGRRFRFNPRSADGIFAEVFGFSSPYGGMGMRGGGCRGMGMRDVFGESRQTSQAPRRKAPPIENKLPCSLEELYKGTTKKMKISREIAYASGKTVPVEEILTIEIQPGWKKGTKITFPEKGNEQPNVIAADIVFIIDEKPHNVFTRQEGEALSRSYTFQLTTLDGRGLTIAIDNGIDPSYEEVVAGERIPISKNPSQKGNLRIKFNITFPSTVLNDPQKRAIYDQYGESSLKNEMPTAGDNAAPYFQTHDGRRFRFNPRSADGIFAEVFGFSSPYGGMGMRGGGCRGMGMRGQSSFGDIFGKDVFGESRQTSQAPRRKAPPIENKLPCSLEELYKGTTKKMKISREIAYASGKTVPVEEILTIEIQPGWKKGTKITFPEKGNEQPNVIAADIVFIIDEKPHNVFTRQEGEALSRSYTFQLTTLDGRGLTIAIDNGIDPSYEEVVAGERIPISKNPSQKGNLRIKFNITFPSTVDAETESQN*