Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0918220 | 0.801765 | 7.717017e-49 | -8.615850e-47 |
| Msa0017510 | Msa0918220 | 0.805346 | 1.395372e-49 | -8.615850e-47 |
| Msa0058820 | Msa0918220 | 0.811510 | 6.752350e-51 | -8.615850e-47 |
| Msa0073530 | Msa0918220 | 0.806118 | 9.605897e-50 | -8.615850e-47 |
| Msa0114060 | Msa0918220 | 0.801206 | 1.004390e-48 | -8.615850e-47 |
| Msa0657970 | Msa0918220 | 0.836399 | 9.576710e-57 | -8.615850e-47 |
| Msa0688270 | Msa0918220 | 0.820064 | 8.357396e-53 | -8.615850e-47 |
| Msa0691380 | Msa0918220 | 0.804009 | 2.653579e-49 | -8.615850e-47 |
| Msa0740430 | Msa0918220 | 0.802448 | 5.584568e-49 | -8.615850e-47 |
| Msa0743720 | Msa0918220 | 0.810935 | 8.998087e-51 | -8.615850e-47 |
| Msa0743890 | Msa0918220 | 0.820483 | 6.697104e-53 | -8.615850e-47 |
| Msa0744040 | Msa0918220 | 0.802314 | 5.951146e-49 | -8.615850e-47 |
| Msa0766630 | Msa0918220 | 0.829916 | 3.938617e-55 | -8.615850e-47 |
| Msa0769920 | Msa0918220 | 0.819377 | 1.198965e-52 | -8.615850e-47 |
| Msa0777850 | Msa0918220 | 0.808653 | 2.786903e-50 | -8.615850e-47 |
| Msa0790510 | Msa0918220 | 0.803156 | 3.988317e-49 | -8.615850e-47 |
| Msa0793640 | Msa0918220 | 0.802621 | 5.142351e-49 | -8.615850e-47 |
| Msa0822650 | Msa0918220 | 0.805040 | 1.617197e-49 | -8.615850e-47 |
| Msa0131770 | Msa0918220 | 0.802710 | 4.930543e-49 | -8.615850e-47 |
| Msa0139060 | Msa0918220 | 0.803939 | 2.743947e-49 | -8.615850e-47 |
| Msa0153910 | Msa0918220 | 0.814185 | 1.752497e-51 | -8.615850e-47 |
| Msa0157290 | Msa0918220 | 0.805511 | 1.288893e-49 | -8.615850e-47 |
| Msa0188830 | Msa0918220 | 0.809786 | 1.592982e-50 | -8.615850e-47 |
| Msa0200260 | Msa0918220 | 0.819788 | 9.660644e-53 | -8.615850e-47 |
| Msa0214300 | Msa0918220 | 0.803761 | 2.986909e-49 | -8.615850e-47 |
| Msa0220580 | Msa0918220 | 0.808990 | 2.359865e-50 | -8.615850e-47 |
| Msa0223690 | Msa0918220 | 0.801726 | 7.859029e-49 | -8.615850e-47 |
| Msa0402290 | Msa0918220 | 0.808611 | 2.844382e-50 | -8.615850e-47 |
| Msa0414230 | Msa0918220 | 0.821000 | 5.095583e-53 | -8.615850e-47 |
| Msa0424790 | Msa0918220 | 0.801469 | 8.875080e-49 | -8.615850e-47 |
| Msa0432300 | Msa0918220 | 0.824366 | 8.390708e-54 | -8.615850e-47 |
| Msa0437990 | Msa0918220 | 0.802858 | 4.594482e-49 | -8.615850e-47 |
| Msa0270100 | Msa0918220 | 0.800956 | 1.129864e-48 | -8.615850e-47 |
| Msa0345970 | Msa0918220 | 0.804850 | 1.772491e-49 | -8.615850e-47 |
| Msa0484780 | Msa0918220 | 0.820060 | 8.373921e-53 | -8.615850e-47 |
| Msa0512900 | Msa0918220 | 0.831434 | 1.673402e-55 | -8.615850e-47 |
| Msa0880140 | Msa0918220 | 0.802611 | 5.168791e-49 | -8.615850e-47 |
| Msa0885280 | Msa0918220 | 0.835738 | 1.408657e-56 | -8.615850e-47 |
| Msa0909120 | Msa0918220 | 0.824819 | 6.564335e-54 | -8.615850e-47 |
| Msa0909140 | Msa0918220 | 0.806735 | 7.118605e-50 | -8.615850e-47 |
| Msa0918220 | Msa0925290 | 0.804153 | 2.476427e-49 | -8.615850e-47 |
| Msa0918220 | Msa0927290 | 0.805862 | 1.087645e-49 | -8.615850e-47 |
| Msa0918220 | Msa0954130 | 0.803125 | 4.046328e-49 | -8.615850e-47 |
| Msa0918220 | Msa0959770 | 0.811880 | 5.609503e-51 | -8.615850e-47 |
| Msa0918220 | Msa0969450 | 0.819268 | 1.269941e-52 | -8.615850e-47 |
| Msa0918220 | Msa0990350 | 0.800410 | 1.460589e-48 | -8.615850e-47 |
| Msa0918220 | Msa1014540 | 0.814299 | 1.653219e-51 | -8.615850e-47 |
| Msa0918220 | Msa1018100 | 0.810076 | 1.379789e-50 | -8.615850e-47 |
| Msa0918220 | Msa1075220 | -0.806829 | 6.800736e-50 | -8.615850e-47 |
| Msa0918220 | Msa1082500 | 0.845213 | 4.671121e-59 | -8.615850e-47 |
| Msa0918220 | Msa1116130 | -0.800356 | 1.497898e-48 | -8.615850e-47 |
| Msa0918220 | Msa1131220 | 0.813247 | 2.819650e-51 | -8.615850e-47 |
| Msa0918220 | Msa1139000 | -0.810922 | 9.057958e-51 | -8.615850e-47 |
| Msa0918220 | Msa1160670 | 0.814152 | 1.782217e-51 | -8.615850e-47 |
| Msa0918220 | Msa1162550 | -0.810271 | 1.252447e-50 | -8.615850e-47 |
| Msa0918220 | Msa1242220 | 0.809091 | 2.245921e-50 | -8.615850e-47 |
| Msa0918220 | Msa1244250 | 0.817456 | 3.267562e-52 | -8.615850e-47 |
| Msa0918220 | Msa1249490 | 0.825110 | 5.603960e-54 | -8.615850e-47 |
| Msa0918220 | Msa1283860 | 0.823032 | 1.722862e-53 | -8.615850e-47 |
| Msa0918220 | Msa1284680 | 0.818586 | 1.814613e-52 | -8.615850e-47 |
| Msa0918220 | Msa1291660 | 0.805663 | 1.197426e-49 | -8.615850e-47 |
| Msa0918220 | Msa1308620 | 0.804208 | 2.411992e-49 | -8.615850e-47 |
| Msa0918220 | Msa1322890 | 0.818609 | 1.793066e-52 | -8.615850e-47 |
| Msa0918220 | Msa1324780 | 0.825088 | 5.670326e-54 | -8.615850e-47 |
| Msa0918220 | Msa1342840 | 0.800909 | 1.155386e-48 | -8.615850e-47 |
| Msa0918220 | Msa1384350 | 0.800123 | 1.670108e-48 | -8.615850e-47 |
| Msa0918220 | Msa1392260 | 0.811086 | 8.348605e-51 | -8.615850e-47 |
| Msa0918220 | Msa1411020 | 0.813108 | 3.024478e-51 | -8.615850e-47 |
| Msa0918220 | Msa1424290 | 0.813041 | 3.129070e-51 | -8.615850e-47 |
| Msa0918220 | Msa1429900 | 0.807669 | 4.515431e-50 | -8.615850e-47 |
| Msa0918220 | Msa1434350 | 0.808615 | 2.838466e-50 | -8.615850e-47 |
| Msa0918220 | Msa1435650 | 0.808555 | 2.924642e-50 | -8.615850e-47 |
| Msa0918220 | Msa1438250 | 0.823110 | 1.652388e-53 | -8.615850e-47 |
| Msa0918220 | Msa1439320 | 0.809889 | 1.513713e-50 | -8.615850e-47 |
| Msa0918220 | Msa1460240 | 0.805408 | 1.354183e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 12 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTTTATGCATATTCT+TGG | 0.250199 | 6_2:+45443935 | None:intergenic |
| AGACAAGAAAGTACACTTTA+TGG | 0.268266 | 6_2:-45443891 | Msa0918220:CDS |
| TTGTAATTTGTTTCAACTAA+TGG | 0.274387 | 6_2:-45446801 | Msa0918220:five_prime_UTR |
| AAGAATATGCATAAAGGAAT+TGG | 0.305271 | 6_2:-45443933 | Msa0918220:CDS |
| CACTTTATGGCATATGTTGA+TGG | 0.413051 | 6_2:-45443878 | Msa0918220:CDS |
| ACAACCAAGAATATGCATAA+AGG | 0.458992 | 6_2:-45443939 | Msa0918220:CDS |
| ATGGCATATGTTGATGGAAG+TGG | 0.511028 | 6_2:-45443872 | Msa0918220:CDS |
| TCGAGGACTGCATTATATGA+TGG | 0.521822 | 6_2:-45446701 | Msa0918220:exon |
| TCTTACGAAGGGATGATGGA+AGG | 0.572073 | 6_2:-45446747 | Msa0918220:five_prime_UTR |
| GACTGCATTATATGATGGAT+AGG | 0.594900 | 6_2:-45446696 | Msa0918220:exon |
| TTATATGATGGATAGGCCCA+AGG | 0.631018 | 6_2:-45446689 | Msa0918220:intron |
| TCTATAATAGCGACAACTCG+AGG | 0.645172 | 6_2:-45446718 | Msa0918220:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTATATCATATATTTT+AGG | - | chr6_2:45444966-45444985 | Msa0918220:intron | 10.0% |
| !!! | ATATTTTTTCTTTGTTATAA+AGG | - | chr6_2:45446008-45446027 | Msa0918220:intron | 10.0% |
| !!! | AGTGACAAATTTTTATTTTA+TGG | - | chr6_2:45444099-45444118 | Msa0918220:intron | 15.0% |
| !!! | ATAATTTAGAGTTGTTATTT+TGG | - | chr6_2:45444251-45444270 | Msa0918220:intron | 15.0% |
| !!! | AAACTTTACATAAAATTTTG+CGG | + | chr6_2:45445026-45445045 | None:intergenic | 15.0% |
| !!! | AAAATTATTGTCTTTTTAAC+TGG | - | chr6_2:45445543-45445562 | Msa0918220:intron | 15.0% |
| !!! | GTTTTTAACTTATTTTTGTA+AGG | + | chr6_2:45445789-45445808 | None:intergenic | 15.0% |
| !! | GTTGAAACAAATTACAAAAA+AGG | + | chr6_2:45443851-45443870 | None:intergenic | 20.0% |
| !!! | TTGTAATTTGTTTCAACTAA+TGG | - | chr6_2:45443854-45443873 | Msa0918220:CDS | 20.0% |
| !! | ATTGAAGACATAATTAAGAA+TGG | + | chr6_2:45444010-45444029 | None:intergenic | 20.0% |
| !! | TTCTTAATTATGTCTTCAAT+TGG | - | chr6_2:45444010-45444029 | Msa0918220:intron | 20.0% |
| !!! | CAATCTAATAGACATTATTT+TGG | - | chr6_2:45444159-45444178 | Msa0918220:intron | 20.0% |
| !!! | AGATGAGTTTATATTTTTCT+TGG | - | chr6_2:45444345-45444364 | Msa0918220:intron | 20.0% |
| !!! | GATGAGTTTATATTTTTCTT+GGG | - | chr6_2:45444346-45444365 | Msa0918220:intron | 20.0% |
| !!! | TATTGAATTATCTTGCTTTT+TGG | - | chr6_2:45444492-45444511 | Msa0918220:intron | 20.0% |
| !!! | AAAATCAAGTTTTGTTTGAT+GGG | - | chr6_2:45444586-45444605 | Msa0918220:intron | 20.0% |
| !!! | TATTTTTTCCCCTTATTTTA+TGG | - | chr6_2:45444657-45444676 | Msa0918220:intron | 20.0% |
| !! | TAACAACAAAAATAAATACG+TGG | + | chr6_2:45444777-45444796 | None:intergenic | 20.0% |
| !! | TGAAAGAAAAAAGATACAAT+TGG | - | chr6_2:45444932-45444951 | Msa0918220:intron | 20.0% |
| !! | ATGCATAATTCAACAAAAAT+AGG | + | chr6_2:45445191-45445210 | None:intergenic | 20.0% |
| !! | AAATAAGTTAAAAACCTTAG+TGG | - | chr6_2:45445794-45445813 | Msa0918220:intron | 20.0% |
| !! | AATAAGTTAAAAACCTTAGT+GGG | - | chr6_2:45445795-45445814 | Msa0918220:intron | 20.0% |
| !!! | TTAATTTGTGAGTATAAGTT+TGG | - | chr6_2:45445907-45445926 | Msa0918220:intron | 20.0% |
| !!! | ATTTAAAATAACTACCAACA+GGG | + | chr6_2:45446176-45446195 | None:intergenic | 20.0% |
| !! | TTAAAGTCTTTGTAAAATCA+AGG | - | chr6_2:45446248-45446267 | Msa0918220:intron | 20.0% |
| !! | TGTAAGTAGAAAGTAAATAT+TGG | - | chr6_2:45446342-45446361 | Msa0918220:intron | 20.0% |
| !! | GTAAGTAGAAAGTAAATATT+GGG | - | chr6_2:45446343-45446362 | Msa0918220:intron | 20.0% |
| !!! | NNNGGTTTTTTGATTTTTCA+AGG | - | chr6_2:45446537-45446556 | Msa0918220:intron | 20.0% |
| !!! | CAAAATCAAGTTTTGTTTGA+TGG | - | chr6_2:45444585-45444604 | Msa0918220:intron | 25.0% |
| ! | ATAAGGGGAAAAAATAACAT+AGG | + | chr6_2:45444653-45444672 | None:intergenic | 25.0% |
| ! | TTTGATGAGAAGATGAAATT+TGG | - | chr6_2:45444734-45444753 | Msa0918220:intron | 25.0% |
| ! | AACAAAAATAAATACGTGGA+GGG | + | chr6_2:45444773-45444792 | None:intergenic | 25.0% |
| !!! | TTTTGTTGTGAGTTTATGTT+AGG | - | chr6_2:45444827-45444846 | Msa0918220:intron | 25.0% |
| !! | ATTTTGTCTCATTCTGTTTT+TGG | - | chr6_2:45444856-45444875 | Msa0918220:intron | 25.0% |
| ! | ACATAATGATTAAAGAGCAA+AGG | + | chr6_2:45445054-45445073 | None:intergenic | 25.0% |
| !! | CATTCCATAAGCATATATTT+TGG | + | chr6_2:45445234-45445253 | None:intergenic | 25.0% |
| !! | AGGTAATTTTCTGCATAATT+TGG | - | chr6_2:45445307-45445326 | Msa0918220:intron | 25.0% |
| ! | AGAAGAAAATAAAACCGATA+CGG | + | chr6_2:45445484-45445503 | None:intergenic | 25.0% |
| !!! | TGATTTTGCTTTGTTTTCTT+TGG | - | chr6_2:45445633-45445652 | Msa0918220:intron | 25.0% |
| !!! | GATTTTGCTTTGTTTTCTTT+GGG | - | chr6_2:45445634-45445653 | Msa0918220:intron | 25.0% |
| !! | TTTTATGTAGTGTCAACTAT+AGG | - | chr6_2:45445759-45445778 | Msa0918220:intron | 25.0% |
| ! | TTATCAAAGATCATATGCTA+TGG | - | chr6_2:45446051-45446070 | Msa0918220:intron | 25.0% |
| !! | TTTAAAATAACTACCAACAG+GGG | + | chr6_2:45446175-45446194 | None:intergenic | 25.0% |
| !! | CATTTAAAATAACTACCAAC+AGG | + | chr6_2:45446177-45446196 | None:intergenic | 25.0% |
| !!! | TTGGGATTTTGAGTATATTT+TGG | - | chr6_2:45446361-45446380 | Msa0918220:intron | 25.0% |
| ! | ACCTTACAAATTGATCAAAA+TGG | + | chr6_2:45446387-45446406 | None:intergenic | 25.0% |
| ! | GTGTATTTATATATACGTTC+CGG | - | chr6_2:45446653-45446672 | Msa0918220:intron | 25.0% |
| !! | TGTGATACCTATAATTTTCA+AGG | + | chr6_2:45446699-45446718 | None:intergenic | 25.0% |
| ! | AATTCCTTTATGCATATTCT+TGG | + | chr6_2:45446723-45446742 | None:intergenic | 25.0% |
| ! | AAGAATATGCATAAAGGAAT+TGG | - | chr6_2:45446722-45446741 | Msa0918220:five_prime_UTR | 25.0% |
| ! | TCAGAATTCTTTTCTTACGA+AGG | - | chr6_2:45443896-45443915 | Msa0918220:CDS | 30.0% |
| ! | CAGAATTCTTTTCTTACGAA+GGG | - | chr6_2:45443897-45443916 | Msa0918220:CDS | 30.0% |
| AAACAACCATTGTTTACCTT+GGG | + | chr6_2:45443985-45444004 | None:intergenic | 30.0% | |
| TAAACAACCATTGTTTACCT+TGG | + | chr6_2:45443986-45444005 | None:intergenic | 30.0% | |
| ! | TTTTATTCTACCATTTGCTC+TGG | - | chr6_2:45444410-45444429 | Msa0918220:intron | 30.0% |
| AAATTTAACACCACCAACAT+AGG | - | chr6_2:45444547-45444566 | Msa0918220:intron | 30.0% | |
| !!! | TTTTCCCCTTATTTTATGGA+TGG | - | chr6_2:45444661-45444680 | Msa0918220:intron | 30.0% |
| CAACAAAAATAAATACGTGG+AGG | + | chr6_2:45444774-45444793 | None:intergenic | 30.0% | |
| ! | ACATAAAATTTTGCGGACAT+TGG | + | chr6_2:45445019-45445038 | None:intergenic | 30.0% |
| AGCTCCAAAATATATGCTTA+TGG | - | chr6_2:45445227-45445246 | Msa0918220:intron | 30.0% | |
| TAAATAGTTAAGCACACATC+TGG | + | chr6_2:45445276-45445295 | None:intergenic | 30.0% | |
| !! | TTTTCTGCATAATTTAGAGC+TGG | - | chr6_2:45445346-45445365 | Msa0918220:intron | 30.0% |
| !!! | CATAATTTAGAGCTGGTTTT+CGG | - | chr6_2:45445353-45445372 | Msa0918220:intron | 30.0% |
| ! | GATTGATTCTTATGTTCTCT+TGG | - | chr6_2:45445656-45445675 | Msa0918220:intron | 30.0% |
| !!! | TCTCTTGGTTCTTATTTTCT+TGG | - | chr6_2:45445671-45445690 | Msa0918220:intron | 30.0% |
| !!! | CTCTTGGTTCTTATTTTCTT+GGG | - | chr6_2:45445672-45445691 | Msa0918220:intron | 30.0% |
| CACATCAAGAAAGCAAATTT+AGG | - | chr6_2:45445835-45445854 | Msa0918220:intron | 30.0% | |
| ! | CTTGTAGTCTTGAATTGATA+TGG | + | chr6_2:45446114-45446133 | None:intergenic | 30.0% |
| !! | GCCATTTTGATCAATTTGTA+AGG | - | chr6_2:45446383-45446402 | Msa0918220:intron | 30.0% |
| AAGAAAGAACTTTCAAACAG+TGG | + | chr6_2:45446415-45446434 | None:intergenic | 30.0% | |
| !! | CTATAATTTTCAAGGCATGT+TGG | + | chr6_2:45446691-45446710 | None:intergenic | 30.0% |
| CAACATGCCTTGAAAATTAT+AGG | - | chr6_2:45446689-45446708 | Msa0918220:intron | 30.0% | |
| ACAACCAAGAATATGCATAA+AGG | - | chr6_2:45446716-45446735 | Msa0918220:five_prime_UTR | 30.0% | |
| ! | AGACAAGAAAGTACACTTTA+TGG | - | chr6_2:45446764-45446783 | Msa0918220:five_prime_UTR | 30.0% |
| !! | GACTGCATTATATGATGGAT+AGG | - | chr6_2:45443959-45443978 | Msa0918220:intron | 35.0% |
| !!! | AGACATTATTTTGGCTGAGT+AGG | - | chr6_2:45444168-45444187 | Msa0918220:intron | 35.0% |
| ! | GAAATCTATTGTGTTTTCCC+AGG | - | chr6_2:45444273-45444292 | Msa0918220:intron | 35.0% |
| ! | TTGTGTTTTCCCAGGTATTA+TGG | - | chr6_2:45444281-45444300 | Msa0918220:intron | 35.0% |
| GTTGTACAACAACAGTTCAT+AGG | + | chr6_2:45444307-45444326 | None:intergenic | 35.0% | |
| AATCTTACTTGATGTCACTG+TGG | - | chr6_2:45444613-45444632 | Msa0918220:intron | 35.0% | |
| ACCACCATCCATAAAATAAG+GGG | + | chr6_2:45444668-45444687 | None:intergenic | 35.0% | |
| CACCACCATCCATAAAATAA+GGG | + | chr6_2:45444669-45444688 | None:intergenic | 35.0% | |
| ACACCACCATCCATAAAATA+AGG | + | chr6_2:45444670-45444689 | None:intergenic | 35.0% | |
| !! | TTATTTTATGGATGGTGGTG+TGG | - | chr6_2:45444669-45444688 | Msa0918220:intron | 35.0% |
| !!! | TGTCTCATTCTGTTTTTGGT+AGG | - | chr6_2:45444860-45444879 | Msa0918220:intron | 35.0% |
| ! | CAATCAGAAGCATGAAATAG+AGG | + | chr6_2:45445160-45445179 | None:intergenic | 35.0% |
| !!! | TTTTGGAGCTATGCTAACTA+AGG | + | chr6_2:45445217-45445236 | None:intergenic | 35.0% |
| ! | TGTGCTTAACTATTTAGAGC+TGG | - | chr6_2:45445280-45445299 | Msa0918220:intron | 35.0% |
| ! | AACTATTTAGAGCTGGTTGA+AGG | - | chr6_2:45445287-45445306 | Msa0918220:intron | 35.0% |
| CACAGAGAAAAATCAGAACA+CGG | + | chr6_2:45445450-45445469 | None:intergenic | 35.0% | |
| CAAACTACAACAACCTATTC+TGG | + | chr6_2:45445598-45445617 | None:intergenic | 35.0% | |
| CAGAATAGGTTGTTGTAGTT+TGG | - | chr6_2:45445596-45445615 | Msa0918220:intron | 35.0% | |
| TCACAACAATTAACCCACTA+AGG | + | chr6_2:45445811-45445830 | None:intergenic | 35.0% | |
| CAGTGAAAGTCAACTGATAA+AGG | - | chr6_2:45445955-45445974 | Msa0918220:intron | 35.0% | |
| ! | TGGATTTTGAACAACTCAGT+TGG | - | chr6_2:45446071-45446090 | Msa0918220:intron | 35.0% |
| TTCTGTTGTTGCACATGATT+TGG | - | chr6_2:45446620-45446639 | Msa0918220:intron | 35.0% | |
| TTTATATATACGTTCCGGAC+TGG | - | chr6_2:45446658-45446677 | Msa0918220:intron | 35.0% | |
| CACTTTATGGCATATGTTGA+TGG | - | chr6_2:45446777-45446796 | Msa0918220:five_prime_UTR | 35.0% | |
| ! | CTTTTCTTACGAAGGGATGA+TGG | - | chr6_2:45443904-45443923 | Msa0918220:CDS | 40.0% |
| TCTATAATAGCGACAACTCG+AGG | - | chr6_2:45443937-45443956 | Msa0918220:CDS | 40.0% | |
| TCGAGGACTGCATTATATGA+TGG | - | chr6_2:45443954-45443973 | Msa0918220:intron | 40.0% | |
| !! | TTATATGATGGATAGGCCCA+AGG | - | chr6_2:45443966-45443985 | Msa0918220:intron | 40.0% |
| ! | ATATCGAAGTGTTAGCGTGA+CGG | - | chr6_2:45444200-45444219 | Msa0918220:intron | 40.0% |
| GTTCATAGGCCATAATACCT+GGG | + | chr6_2:45444293-45444312 | None:intergenic | 40.0% | |
| AGTTCATAGGCCATAATACC+TGG | + | chr6_2:45444294-45444313 | None:intergenic | 40.0% | |
| !!! | TCCCCTTATTTTATGGATGG+TGG | - | chr6_2:45444664-45444683 | Msa0918220:intron | 40.0% |
| AGAAAAATCAGAACACGGTG+AGG | + | chr6_2:45445445-45445464 | None:intergenic | 40.0% | |
| ! | CCTATTCTGGAAAAAGCAAC+AGG | + | chr6_2:45445585-45445604 | None:intergenic | 40.0% |
| !!! | CCTGTTGCTTTTTCCAGAAT+AGG | - | chr6_2:45445582-45445601 | Msa0918220:intron | 40.0% |
| TGAAATAAATGTGCCCCTGT+TGG | - | chr6_2:45446159-45446178 | Msa0918220:intron | 40.0% | |
| ! | ATGGCATATGTTGATGGAAG+TGG | - | chr6_2:45446783-45446802 | Msa0918220:five_prime_UTR | 40.0% |
| !! | TCTTACGAAGGGATGATGGA+AGG | - | chr6_2:45443908-45443927 | Msa0918220:CDS | 45.0% |
| GATAGGCCCAAGGTAAACAA+TGG | - | chr6_2:45443976-45443995 | Msa0918220:intron | 45.0% | |
| TAAGCTGCAACTGGATCAAG+TGG | + | chr6_2:45444385-45444404 | None:intergenic | 45.0% | |
| TTGATCCAGTTGCAGCTTAG+CGG | - | chr6_2:45444386-45444405 | Msa0918220:intron | 45.0% | |
| AACTTGCAGACCAGAGCAAA+TGG | + | chr6_2:45444423-45444442 | None:intergenic | 45.0% | |
| ACTCCTGCTTCATCCTATGT+TGG | + | chr6_2:45444563-45444582 | None:intergenic | 45.0% | |
| ! | CATAATTTGGAGCGAGATCG+AGG | - | chr6_2:45445320-45445339 | Msa0918220:intron | 45.0% |
| ! | GTAGTGCAGCAGCAATGTTT+TGG | - | chr6_2:45445389-45445408 | Msa0918220:intron | 45.0% |
| ! | GTCCTTGTCTTCATGCGTTT+TGG | - | chr6_2:45445508-45445527 | Msa0918220:intron | 45.0% |
| AGCCAAAACGCATGAAGACA+AGG | + | chr6_2:45445513-45445532 | None:intergenic | 45.0% | |
| ATGCCCATTGAAGAACTGCT+TGG | - | chr6_2:45445867-45445886 | Msa0918220:intron | 45.0% | |
| TGCCCATTGAAGAACTGCTT+GGG | - | chr6_2:45445868-45445887 | Msa0918220:intron | 45.0% | |
| GATATGGAATGAGCCATGCT+TGG | + | chr6_2:45446098-45446117 | None:intergenic | 45.0% | |
| ! | TGCACATGATTTGGCAGATG+TGG | - | chr6_2:45446629-45446648 | Msa0918220:intron | 45.0% |
| !!! | TTTTAAAATTATATTTATGT+TGG | - | chr6_2:45444462-45444481 | Msa0918220:intron | 5.0% |
| GCAACTGGATCAAGTGGAGA+CGG | + | chr6_2:45444379-45444398 | None:intergenic | 50.0% | |
| AAAAGCCGCTAAGCTGCAAC+TGG | + | chr6_2:45444394-45444413 | None:intergenic | 50.0% | |
| CCTGCTTCATCCTATGTTGG+TGG | + | chr6_2:45444560-45444579 | None:intergenic | 50.0% | |
| CCACCAACATAGGATGAAGC+AGG | - | chr6_2:45444557-45444576 | Msa0918220:intron | 50.0% | |
| CTTGATGTCACTGTGGTTGC+AGG | - | chr6_2:45444620-45444639 | Msa0918220:intron | 50.0% | |
| ! | TTATGGATGGTGGTGTGGCT+AGG | - | chr6_2:45444674-45444693 | Msa0918220:intron | 50.0% |
| !!! | TAGAGCTGGTTTTCGGCATG+TGG | - | chr6_2:45445360-45445379 | Msa0918220:intron | 50.0% |
| !! | GGTTTTCGGCATGTGGACTA+AGG | - | chr6_2:45445367-45445386 | Msa0918220:intron | 50.0% |
| GTATTGCAGCTGCTACGTAG+TGG | - | chr6_2:45445411-45445430 | Msa0918220:intron | 50.0% | |
| TAAAACCGATACGGTGCAGC+TGG | + | chr6_2:45445475-45445494 | None:intergenic | 50.0% | |
| GCCCATTGAAGAACTGCTTG+GGG | - | chr6_2:45445869-45445888 | Msa0918220:intron | 50.0% | |
| GCCCCAAGCAGTTCTTCAAT+GGG | + | chr6_2:45445873-45445892 | None:intergenic | 50.0% | |
| AGCCCCAAGCAGTTCTTCAA+TGG | + | chr6_2:45445874-45445893 | None:intergenic | 50.0% | |
| CAACTCAGTTGGACCAAGCA+TGG | - | chr6_2:45446082-45446101 | Msa0918220:intron | 50.0% | |
| !! | ATATACGTTCCGGACTGGTG+TGG | - | chr6_2:45446663-45446682 | Msa0918220:intron | 50.0% |
| ! | TCGAAGTGTTAGCGTGACGG+TGG | - | chr6_2:45444203-45444222 | Msa0918220:intron | 55.0% |
| GTGTTCCAGCTGCACCGTAT+CGG | - | chr6_2:45445467-45445486 | Msa0918220:intron | 55.0% | |
| ATGTTGGCGCCACACCAGTC+CGG | + | chr6_2:45446675-45446694 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 45443844 | 45446833 | 45443844 | ID=Msa0918220;Name=Msa0918220 |
| chr6_2 | mRNA | 45443844 | 45446833 | 45443844 | ID=Msa0918220-mRNA-1;Parent=Msa0918220;Name=Msa0918220-mRNA-1;_AED=0.40;_eAED=0.68;_QI=126|0|0.5|1|0|0|2|0|47 |
| chr6_2 | exon | 45443844 | 45443966 | 45443844 | ID=Msa0918220-mRNA-1:exon:7152;Parent=Msa0918220-mRNA-1 |
| chr6_2 | exon | 45446690 | 45446833 | 45446690 | ID=Msa0918220-mRNA-1:exon:7151;Parent=Msa0918220-mRNA-1 |
| chr6_2 | five_prime_UTR | 45446708 | 45446833 | 45446708 | ID=Msa0918220-mRNA-1:five_prime_utr;Parent=Msa0918220-mRNA-1 |
| chr6_2 | CDS | 45446690 | 45446707 | 45446690 | ID=Msa0918220-mRNA-1:cds;Parent=Msa0918220-mRNA-1 |
| chr6_2 | CDS | 45443844 | 45443966 | 45443844 | ID=Msa0918220-mRNA-1:cds;Parent=Msa0918220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
