Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061350 | XP_013468709.1 | 75.405 | 309 | 42 | 3 | 1 | 275 | 1 | 309 | 7.22e-153 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061350 | E2FKJ3 | 75.405 | 309 | 42 | 3 | 1 | 275 | 1 | 309 | 3.45e-153 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0061350 | 0.867660 | 1.161521e-65 | -8.615850e-47 |
| Msa0029960 | Msa0061350 | 0.832067 | 1.167544e-55 | -8.615850e-47 |
| Msa0029970 | Msa0061350 | 0.886099 | 4.591866e-72 | -8.615850e-47 |
| Msa0061350 | Msa0064120 | 0.848032 | 7.933845e-60 | -8.615850e-47 |
| Msa0061350 | Msa0071850 | 0.906720 | 1.096798e-80 | -8.615850e-47 |
| Msa0061350 | Msa0071860 | 0.899317 | 2.233097e-77 | -8.615850e-47 |
| Msa0061350 | Msa0071880 | 0.857371 | 1.708049e-62 | -8.615850e-47 |
| Msa0061350 | Msa0108880 | 0.841269 | 5.263533e-58 | -8.615850e-47 |
| Msa0061350 | Msa0125200 | 0.891876 | 2.661393e-74 | -8.615850e-47 |
| Msa0061350 | Msa0125210 | 0.861531 | 9.607950e-64 | -8.615850e-47 |
| Msa0061350 | Msa0155180 | 0.821939 | 3.091878e-53 | -8.615850e-47 |
| Msa0061350 | Msa0193850 | 0.806300 | 8.794550e-50 | -8.615850e-47 |
| Msa0061350 | Msa0230800 | 0.803465 | 3.441937e-49 | -8.615850e-47 |
| Msa0061350 | Msa0230870 | 0.810511 | 1.111697e-50 | -8.615850e-47 |
| Msa0061350 | Msa0314170 | 0.818911 | 1.531123e-52 | -8.615850e-47 |
| Msa0061350 | Msa0418970 | 0.830978 | 2.166099e-55 | -8.615850e-47 |
| Msa0061350 | Msa0460550 | 0.837662 | 4.554429e-57 | -8.615850e-47 |
| Msa0061350 | Msa0528570 | 0.806736 | 7.116922e-50 | -8.615850e-47 |
| Msa0061350 | Msa0738700 | 0.808910 | 2.455613e-50 | -8.615850e-47 |
| Msa0061350 | Msa1415540 | 0.803212 | 3.882406e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061350 | MtrunA17_Chr1g0186981 | 75.405 | 309 | 42 | 3 | 1 | 275 | 1 | 309 | 6.64e-157 | 452 |
| Msa0061350 | MtrunA17_Chr1g0187001 | 46.595 | 279 | 114 | 4 | 31 | 275 | 9 | 286 | 2.76e-72 | 233 |
| Msa0061350 | MtrunA17_Chr1g0186991 | 44.850 | 301 | 123 | 5 | 16 | 275 | 16 | 314 | 1.14e-70 | 230 |
| Msa0061350 | MtrunA17_Chr1g0165791 | 29.819 | 332 | 169 | 5 | 6 | 276 | 1 | 329 | 1.46e-39 | 146 |
| Msa0061350 | MtrunA17_Chr8g0364451 | 50.962 | 104 | 45 | 2 | 83 | 180 | 36 | 139 | 1.58e-21 | 89.0 |
| Msa0061350 | MtrunA17_Chr1g0186851 | 26.214 | 309 | 155 | 9 | 33 | 272 | 20 | 324 | 4.79e-21 | 92.8 |
| Msa0061350 | MtrunA17_Chr1g0187041 | 25.649 | 308 | 158 | 7 | 33 | 272 | 20 | 324 | 1.15e-18 | 85.9 |
| Msa0061350 | MtrunA17_Chr1g0186861 | 24.839 | 310 | 160 | 7 | 33 | 272 | 20 | 326 | 1.64e-18 | 85.1 |
| Msa0061350 | MtrunA17_Chr1g0186841 | 31.250 | 224 | 120 | 4 | 18 | 208 | 6 | 228 | 2.27e-18 | 84.7 |
| Msa0061350 | MtrunA17_Chr1g0186911 | 25.926 | 216 | 107 | 5 | 107 | 272 | 12 | 224 | 3.89e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATATTGCCCACTCTTTC+AGG | 0.142806 | 1_2:-19424637 | None:intergenic |
| TCTTTCTGACCCACAGATTT+TGG | 0.161264 | 1_2:+19423899 | Msa0061350:CDS |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1_2:+19424476 | Msa0061350:CDS |
| CAAACGATCAACAATATCTT+TGG | 0.212916 | 1_2:-19425361 | None:intergenic |
| AGCTTCAGTGTAGGAAATTC+TGG | 0.283336 | 1_2:-19424246 | None:intergenic |
| GTGAATTTGTGGCATTCTTT+TGG | 0.296256 | 1_2:-19423839 | None:intergenic |
| TGTGTCCAGTGTTGTACTTC+AGG | 0.307656 | 1_2:+19423986 | Msa0061350:CDS |
| AAACTGGTTACAGAAATCTT+TGG | 0.333186 | 1_2:-19424219 | None:intergenic |
| TTCAGATGATGTAACTGAAT+TGG | 0.354961 | 1_2:+19424586 | Msa0061350:CDS |
| TTAAATATACAAACCTTAAG+AGG | 0.361830 | 1_2:+19423742 | Msa0061350:five_prime_UTR |
| AGGAAATTCTGGTTTGAAAC+TGG | 0.363197 | 1_2:-19424235 | None:intergenic |
| AGAGGCTTTCTCGCATTGTT+GGG | 0.367824 | 1_2:+19425158 | Msa0061350:intron |
| CAAAACTAACCGATTTAACT+TGG | 0.368115 | 1_2:-19425440 | None:intergenic |
| TTGGCTCAAATTGCTATTAG+TGG | 0.371938 | 1_2:-19423820 | None:intergenic |
| TTAAGGTTTGTATATTTAAG+AGG | 0.376562 | 1_2:-19423738 | None:intergenic |
| GGAAACTATTTGCACCTTAA+CGG | 0.379564 | 1_2:+19424497 | Msa0061350:CDS |
| AAACGATCAACAATATCTTT+GGG | 0.385496 | 1_2:-19425360 | None:intergenic |
| AGAGGAGTAGTAACCTCTTA+AGG | 0.389066 | 1_2:-19423755 | None:intergenic |
| ACTGAAGCTGATTTCTTGTC+AGG | 0.416605 | 1_2:+19424260 | Msa0061350:CDS |
| GATAGTCCACAAATCTTTGA+AGG | 0.421398 | 1_2:+19425411 | Msa0061350:CDS |
| GAGAGGCTTTCTCGCATTGT+TGG | 0.425424 | 1_2:+19425157 | Msa0061350:intron |
| GAAGAATCCATAGTGTTGTT+TGG | 0.438259 | 1_2:-19424406 | None:intergenic |
| TGTGGGTCAGAAAGATCAAA+TGG | 0.439791 | 1_2:-19423891 | None:intergenic |
| AACTCTAGCTGCTTTCACTT+TGG | 0.440676 | 1_2:+19424469 | Msa0061350:CDS |
| AGGCAATGTCCAAGTTAAAT+CGG | 0.441074 | 1_2:+19425431 | Msa0061350:CDS |
| AGAGGAAATGAATGATGGAT+TGG | 0.442024 | 1_2:-19423720 | None:intergenic |
| TGAATTGGTCAAACATATAG+TGG | 0.443756 | 1_2:+19424601 | Msa0061350:CDS |
| TGGGGAGTTGTATAAGCATC+TGG | 0.443781 | 1_2:+19425177 | Msa0061350:CDS |
| TCAGAAAGATCAAATGGGTT+TGG | 0.449551 | 1_2:-19423885 | None:intergenic |
| ACATTGCCTTCAAAGATTTG+TGG | 0.449946 | 1_2:-19425417 | None:intergenic |
| ATCATGTCCCTTTCCAACTT+AGG | 0.457041 | 1_2:+19423789 | Msa0061350:exon |
| GTCAAAGCAGGAACATCAAC+CGG | 0.457526 | 1_2:-19424677 | None:intergenic |
| ACCTGAAAGAGTGGGCAATA+TGG | 0.460958 | 1_2:+19424636 | Msa0061350:CDS |
| GCGTACACCAAACAACACTA+TGG | 0.462411 | 1_2:+19424399 | Msa0061350:CDS |
| CCGTTGTTGCGACACCGTTA+AGG | 0.465134 | 1_2:-19424511 | None:intergenic |
| AGTGGCACTTCCACCTAAGT+TGG | 0.470174 | 1_2:-19423802 | None:intergenic |
| CATCCCATGAGTAAGATCTC+AGG | 0.482917 | 1_2:-19424433 | None:intergenic |
| ATTTAAGAGGAAATGAATGA+TGG | 0.483557 | 1_2:-19423725 | None:intergenic |
| CAAACATATAGTGGAGATGT+TGG | 0.501391 | 1_2:+19424610 | Msa0061350:CDS |
| ATTGTCCAATAAACAAAGAC+AGG | 0.505333 | 1_2:-19424719 | None:intergenic |
| TGCAAGGCGTCTGTCAAAGC+AGG | 0.508357 | 1_2:-19424689 | None:intergenic |
| GTCGCAACAACGGACACACT+TGG | 0.525682 | 1_2:+19424521 | Msa0061350:CDS |
| AAAACCTGAGATCTTACTCA+TGG | 0.549235 | 1_2:+19424429 | Msa0061350:CDS |
| TGTTGGATCACCTGAAAGAG+TGG | 0.559929 | 1_2:+19424627 | Msa0061350:CDS |
| CACTTCCACCTAAGTTGGAA+AGG | 0.561679 | 1_2:-19423797 | None:intergenic |
| GTCTGCTGAAGGCTATGATC+CGG | 0.567475 | 1_2:+19424658 | Msa0061350:CDS |
| TAAACTCTGTCCAAAATCTG+TGG | 0.567872 | 1_2:-19423909 | None:intergenic |
| GAGGCTTTCTCGCATTGTTG+GGG | 0.567953 | 1_2:+19425159 | Msa0061350:intron |
| AAACTCTGTCCAAAATCTGT+GGG | 0.571497 | 1_2:-19423908 | None:intergenic |
| ACTTCCACCTAAGTTGGAAA+GGG | 0.571991 | 1_2:-19423796 | None:intergenic |
| ATGTCCCTTTCCAACTTAGG+TGG | 0.574423 | 1_2:+19423792 | Msa0061350:CDS |
| AAATATCATCATCAGTGACA+TGG | 0.581832 | 1_2:-19423938 | None:intergenic |
| AAAGCTTTGATCCACCGCGA+TGG | 0.584481 | 1_2:+19425384 | Msa0061350:CDS |
| GACTATCAGTTCCATCGCGG+TGG | 0.591611 | 1_2:-19425395 | None:intergenic |
| GTGGGTCAGAAAGATCAAAT+GGG | 0.593934 | 1_2:-19423890 | None:intergenic |
| CCTTAACGGTGTCGCAACAA+CGG | 0.599300 | 1_2:+19424511 | Msa0061350:CDS |
| CAAGAAATCAGCTTCAGTGT+AGG | 0.603259 | 1_2:-19424255 | None:intergenic |
| AAAGACAGGAATTTCTTGCA+AGG | 0.611562 | 1_2:-19424705 | None:intergenic |
| AAACCTGAGATCTTACTCAT+GGG | 0.614423 | 1_2:+19424430 | Msa0061350:CDS |
| AATATCATCATCAGTGACAT+GGG | 0.619157 | 1_2:-19423937 | None:intergenic |
| GACTCTTAAAGTTCTTCGTG+CGG | 0.625165 | 1_2:-19425338 | None:intergenic |
| TGGGCAATATGGTCTGCTGA+AGG | 0.631214 | 1_2:+19424647 | Msa0061350:CDS |
| ACATGATGACTCAATATGAG+AGG | 0.635696 | 1_2:-19423773 | None:intergenic |
| GTTGGATCACCTGAAAGAGT+GGG | 0.643180 | 1_2:+19424628 | Msa0061350:CDS |
| TATAACCTGAAGTACAACAC+TGG | 0.646933 | 1_2:-19423991 | None:intergenic |
| GCAATGAGCATCATTACGTG+TGG | 0.696376 | 1_2:-19424378 | None:intergenic |
| GTGGACTATCAGTTCCATCG+CGG | 0.725930 | 1_2:-19425398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATACATTAGATCA+TGG | + | chr1_2:19424080-19424099 | Msa0061350:intron | 15.0% |
| !! | TGATGATAAAATAATAACAT+TGG | + | chr1_2:19424107-19424126 | Msa0061350:intron | 15.0% |
| !!! | TCTAACAATAATATTTTTTG+TGG | - | chr1_2:19424902-19424921 | None:intergenic | 15.0% |
| !! | TTATTGTTAGATATGATATA+AGG | + | chr1_2:19424911-19424930 | Msa0061350:intron | 15.0% |
| !! | AAATTTCTAACTATATGTAA+CGG | + | chr1_2:19425017-19425036 | Msa0061350:intron | 15.0% |
| !!! | ATTATTTATCCTCATTTTTT+AGG | + | chr1_2:19425110-19425129 | Msa0061350:intron | 15.0% |
| !!! | TTATTTATCCTCATTTTTTA+GGG | + | chr1_2:19425111-19425130 | Msa0061350:intron | 15.0% |
| !! | AAAATATATACATTAGATCA+TGG | + | chr1_2:19424080-19424099 | Msa0061350:intron | 15.0% |
| !! | TGATGATAAAATAATAACAT+TGG | + | chr1_2:19424107-19424126 | Msa0061350:intron | 15.0% |
| !!! | TCTAACAATAATATTTTTTG+TGG | - | chr1_2:19424902-19424921 | None:intergenic | 15.0% |
| !! | TTATTGTTAGATATGATATA+AGG | + | chr1_2:19424911-19424930 | Msa0061350:intron | 15.0% |
| !! | AAATTTCTAACTATATGTAA+CGG | + | chr1_2:19425017-19425036 | Msa0061350:intron | 15.0% |
| !!! | ATTATTTATCCTCATTTTTT+AGG | + | chr1_2:19425110-19425129 | Msa0061350:intron | 15.0% |
| !!! | TTATTTATCCTCATTTTTTA+GGG | + | chr1_2:19425111-19425130 | Msa0061350:intron | 15.0% |
| !! | TTAAGGTTTGTATATTTAAG+AGG | - | chr1_2:19423741-19423760 | None:intergenic | 20.0% |
| !! | TTAAATATACAAACCTTAAG+AGG | + | chr1_2:19423742-19423761 | Msa0061350:five_prime_UTR | 20.0% |
| !! | TTTAAAGACTTCAATTGATA+TGG | - | chr1_2:19424063-19424082 | None:intergenic | 20.0% |
| !! | TAAAGAACTAATGCATAAAA+GGG | - | chr1_2:19424158-19424177 | None:intergenic | 20.0% |
| !! | TTAAAGAACTAATGCATAAA+AGG | - | chr1_2:19424159-19424178 | None:intergenic | 20.0% |
| !! | TTAAGGTTTGTATATTTAAG+AGG | - | chr1_2:19423741-19423760 | None:intergenic | 20.0% |
| !! | TTAAATATACAAACCTTAAG+AGG | + | chr1_2:19423742-19423761 | Msa0061350:five_prime_UTR | 20.0% |
| !! | TTTAAAGACTTCAATTGATA+TGG | - | chr1_2:19424063-19424082 | None:intergenic | 20.0% |
| !! | TAAAGAACTAATGCATAAAA+GGG | - | chr1_2:19424158-19424177 | None:intergenic | 20.0% |
| !! | TTAAAGAACTAATGCATAAA+AGG | - | chr1_2:19424159-19424178 | None:intergenic | 20.0% |
| ! | ATTTAAGAGGAAATGAATGA+TGG | - | chr1_2:19423728-19423747 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTAGTGAATTTG+TGG | - | chr1_2:19423853-19423872 | None:intergenic | 25.0% |
| ! | TGTGTTATCTTAGTAGATTA+AGG | + | chr1_2:19424301-19424320 | Msa0061350:intron | 25.0% |
| !! | AAATTCCTGTCTTTGTTTAT+TGG | + | chr1_2:19424714-19424733 | Msa0061350:intron | 25.0% |
| ! | TTGATATTACGGAAAAATGT+GGG | + | chr1_2:19424818-19424837 | Msa0061350:intron | 25.0% |
| ! | AAACGATCAACAATATCTTT+GGG | - | chr1_2:19425363-19425382 | None:intergenic | 25.0% |
| ! | ATTTAAGAGGAAATGAATGA+TGG | - | chr1_2:19423728-19423747 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTAGTGAATTTG+TGG | - | chr1_2:19423853-19423872 | None:intergenic | 25.0% |
| ! | TGTGTTATCTTAGTAGATTA+AGG | + | chr1_2:19424301-19424320 | Msa0061350:intron | 25.0% |
| !! | AAATTCCTGTCTTTGTTTAT+TGG | + | chr1_2:19424714-19424733 | Msa0061350:intron | 25.0% |
| ! | TTGATATTACGGAAAAATGT+GGG | + | chr1_2:19424818-19424837 | Msa0061350:intron | 25.0% |
| ! | AAACGATCAACAATATCTTT+GGG | - | chr1_2:19425363-19425382 | None:intergenic | 25.0% |
| AATATCATCATCAGTGACAT+GGG | - | chr1_2:19423940-19423959 | None:intergenic | 30.0% | |
| AAATATCATCATCAGTGACA+TGG | - | chr1_2:19423941-19423960 | None:intergenic | 30.0% | |
| AAACTGGTTACAGAAATCTT+TGG | - | chr1_2:19424222-19424241 | None:intergenic | 30.0% | |
| ! | TACATCATCTGAAATCTTTC+TGG | - | chr1_2:19424579-19424598 | None:intergenic | 30.0% |
| TTCAGATGATGTAACTGAAT+TGG | + | chr1_2:19424586-19424605 | Msa0061350:CDS | 30.0% | |
| TGAATTGGTCAAACATATAG+TGG | + | chr1_2:19424601-19424620 | Msa0061350:CDS | 30.0% | |
| ATTGTCCAATAAACAAAGAC+AGG | - | chr1_2:19424722-19424741 | None:intergenic | 30.0% | |
| CTATGCAAACCTTGATATTA+CGG | + | chr1_2:19424807-19424826 | Msa0061350:intron | 30.0% | |
| ! | CACATTTTTCCGTAATATCA+AGG | - | chr1_2:19424819-19424838 | None:intergenic | 30.0% |
| CTTGATATTACGGAAAAATG+TGG | + | chr1_2:19424817-19424836 | Msa0061350:intron | 30.0% | |
| TTCTAACTATATGTAACGGT+TGG | + | chr1_2:19425021-19425040 | Msa0061350:intron | 30.0% | |
| GTTATAGTCCCTAAAAAATG+AGG | - | chr1_2:19425122-19425141 | None:intergenic | 30.0% | |
| ACTTATCAGCTTATAAAGAG+AGG | + | chr1_2:19425140-19425159 | Msa0061350:intron | 30.0% | |
| TTTGTGATCAAAATCTCAGA+GGG | - | chr1_2:19425259-19425278 | None:intergenic | 30.0% | |
| ATTTGTGATCAAAATCTCAG+AGG | - | chr1_2:19425260-19425279 | None:intergenic | 30.0% | |
| ! | AGCTTATATCTATTTGTTGC+AGG | + | chr1_2:19425294-19425313 | Msa0061350:intron | 30.0% |
| CAAACGATCAACAATATCTT+TGG | - | chr1_2:19425364-19425383 | None:intergenic | 30.0% | |
| ! | CAAAACTAACCGATTTAACT+TGG | - | chr1_2:19425443-19425462 | None:intergenic | 30.0% |
| AATATCATCATCAGTGACAT+GGG | - | chr1_2:19423940-19423959 | None:intergenic | 30.0% | |
| AAATATCATCATCAGTGACA+TGG | - | chr1_2:19423941-19423960 | None:intergenic | 30.0% | |
| AAACTGGTTACAGAAATCTT+TGG | - | chr1_2:19424222-19424241 | None:intergenic | 30.0% | |
| ! | TACATCATCTGAAATCTTTC+TGG | - | chr1_2:19424579-19424598 | None:intergenic | 30.0% |
| TTCAGATGATGTAACTGAAT+TGG | + | chr1_2:19424586-19424605 | Msa0061350:CDS | 30.0% | |
| TGAATTGGTCAAACATATAG+TGG | + | chr1_2:19424601-19424620 | Msa0061350:CDS | 30.0% | |
| ATTGTCCAATAAACAAAGAC+AGG | - | chr1_2:19424722-19424741 | None:intergenic | 30.0% | |
| CTATGCAAACCTTGATATTA+CGG | + | chr1_2:19424807-19424826 | Msa0061350:intron | 30.0% | |
| ! | CACATTTTTCCGTAATATCA+AGG | - | chr1_2:19424819-19424838 | None:intergenic | 30.0% |
| CTTGATATTACGGAAAAATG+TGG | + | chr1_2:19424817-19424836 | Msa0061350:intron | 30.0% | |
| TTCTAACTATATGTAACGGT+TGG | + | chr1_2:19425021-19425040 | Msa0061350:intron | 30.0% | |
| GTTATAGTCCCTAAAAAATG+AGG | - | chr1_2:19425122-19425141 | None:intergenic | 30.0% | |
| ACTTATCAGCTTATAAAGAG+AGG | + | chr1_2:19425140-19425159 | Msa0061350:intron | 30.0% | |
| TTTGTGATCAAAATCTCAGA+GGG | - | chr1_2:19425259-19425278 | None:intergenic | 30.0% | |
| ATTTGTGATCAAAATCTCAG+AGG | - | chr1_2:19425260-19425279 | None:intergenic | 30.0% | |
| ! | AGCTTATATCTATTTGTTGC+AGG | + | chr1_2:19425294-19425313 | Msa0061350:intron | 30.0% |
| CAAACGATCAACAATATCTT+TGG | - | chr1_2:19425364-19425383 | None:intergenic | 30.0% | |
| ! | CAAAACTAACCGATTTAACT+TGG | - | chr1_2:19425443-19425462 | None:intergenic | 30.0% |
| !! | AGAGGAAATGAATGATGGAT+TGG | - | chr1_2:19423723-19423742 | None:intergenic | 35.0% |
| ACATGATGACTCAATATGAG+AGG | - | chr1_2:19423776-19423795 | None:intergenic | 35.0% | |
| ! | TTGGCTCAAATTGCTATTAG+TGG | - | chr1_2:19423823-19423842 | None:intergenic | 35.0% |
| ! | GTGAATTTGTGGCATTCTTT+TGG | - | chr1_2:19423842-19423861 | None:intergenic | 35.0% |
| ! | TCAGAAAGATCAAATGGGTT+TGG | - | chr1_2:19423888-19423907 | None:intergenic | 35.0% |
| AAACTCTGTCCAAAATCTGT+GGG | - | chr1_2:19423911-19423930 | None:intergenic | 35.0% | |
| TAAACTCTGTCCAAAATCTG+TGG | - | chr1_2:19423912-19423931 | None:intergenic | 35.0% | |
| TATAACCTGAAGTACAACAC+TGG | - | chr1_2:19423994-19424013 | None:intergenic | 35.0% | |
| !! | AGGAAATTCTGGTTTGAAAC+TGG | - | chr1_2:19424238-19424257 | None:intergenic | 35.0% |
| ! | GAAGAATCCATAGTGTTGTT+TGG | - | chr1_2:19424409-19424428 | None:intergenic | 35.0% |
| AAAACCTGAGATCTTACTCA+TGG | + | chr1_2:19424429-19424448 | Msa0061350:CDS | 35.0% | |
| AAACCTGAGATCTTACTCAT+GGG | + | chr1_2:19424430-19424449 | Msa0061350:CDS | 35.0% | |
| GGAAACTATTTGCACCTTAA+CGG | + | chr1_2:19424497-19424516 | Msa0061350:CDS | 35.0% | |
| ! | CAAACATATAGTGGAGATGT+TGG | + | chr1_2:19424610-19424629 | Msa0061350:CDS | 35.0% |
| AAAGACAGGAATTTCTTGCA+AGG | - | chr1_2:19424708-19424727 | None:intergenic | 35.0% | |
| ! | CGGTGTTTCGTAAGTTTTTA+TGG | + | chr1_2:19424775-19424794 | Msa0061350:intron | 35.0% |
| GATAGTCCACAAATCTTTGA+AGG | + | chr1_2:19425411-19425430 | Msa0061350:CDS | 35.0% | |
| ACATTGCCTTCAAAGATTTG+TGG | - | chr1_2:19425420-19425439 | None:intergenic | 35.0% | |
| AGGCAATGTCCAAGTTAAAT+CGG | + | chr1_2:19425431-19425450 | Msa0061350:CDS | 35.0% | |
| !! | AGAGGAAATGAATGATGGAT+TGG | - | chr1_2:19423723-19423742 | None:intergenic | 35.0% |
| ACATGATGACTCAATATGAG+AGG | - | chr1_2:19423776-19423795 | None:intergenic | 35.0% | |
| ! | TTGGCTCAAATTGCTATTAG+TGG | - | chr1_2:19423823-19423842 | None:intergenic | 35.0% |
| ! | GTGAATTTGTGGCATTCTTT+TGG | - | chr1_2:19423842-19423861 | None:intergenic | 35.0% |
| ! | TCAGAAAGATCAAATGGGTT+TGG | - | chr1_2:19423888-19423907 | None:intergenic | 35.0% |
| AAACTCTGTCCAAAATCTGT+GGG | - | chr1_2:19423911-19423930 | None:intergenic | 35.0% | |
| TAAACTCTGTCCAAAATCTG+TGG | - | chr1_2:19423912-19423931 | None:intergenic | 35.0% | |
| TATAACCTGAAGTACAACAC+TGG | - | chr1_2:19423994-19424013 | None:intergenic | 35.0% | |
| !! | AGGAAATTCTGGTTTGAAAC+TGG | - | chr1_2:19424238-19424257 | None:intergenic | 35.0% |
| ! | GAAGAATCCATAGTGTTGTT+TGG | - | chr1_2:19424409-19424428 | None:intergenic | 35.0% |
| AAAACCTGAGATCTTACTCA+TGG | + | chr1_2:19424429-19424448 | Msa0061350:CDS | 35.0% | |
| AAACCTGAGATCTTACTCAT+GGG | + | chr1_2:19424430-19424449 | Msa0061350:CDS | 35.0% | |
| GGAAACTATTTGCACCTTAA+CGG | + | chr1_2:19424497-19424516 | Msa0061350:CDS | 35.0% | |
| ! | CAAACATATAGTGGAGATGT+TGG | + | chr1_2:19424610-19424629 | Msa0061350:CDS | 35.0% |
| AAAGACAGGAATTTCTTGCA+AGG | - | chr1_2:19424708-19424727 | None:intergenic | 35.0% | |
| ! | CGGTGTTTCGTAAGTTTTTA+TGG | + | chr1_2:19424775-19424794 | Msa0061350:intron | 35.0% |
| GATAGTCCACAAATCTTTGA+AGG | + | chr1_2:19425411-19425430 | Msa0061350:CDS | 35.0% | |
| ACATTGCCTTCAAAGATTTG+TGG | - | chr1_2:19425420-19425439 | None:intergenic | 35.0% | |
| AGGCAATGTCCAAGTTAAAT+CGG | + | chr1_2:19425431-19425450 | Msa0061350:CDS | 35.0% | |
| AGAGGAGTAGTAACCTCTTA+AGG | - | chr1_2:19423758-19423777 | None:intergenic | 40.0% | |
| ATCATGTCCCTTTCCAACTT+AGG | + | chr1_2:19423789-19423808 | Msa0061350:exon | 40.0% | |
| ! | ACTTCCACCTAAGTTGGAAA+GGG | - | chr1_2:19423799-19423818 | None:intergenic | 40.0% |
| GTGGGTCAGAAAGATCAAAT+GGG | - | chr1_2:19423893-19423912 | None:intergenic | 40.0% | |
| TGTGGGTCAGAAAGATCAAA+TGG | - | chr1_2:19423894-19423913 | None:intergenic | 40.0% | |
| ! | TCTTTCTGACCCACAGATTT+TGG | + | chr1_2:19423899-19423918 | Msa0061350:CDS | 40.0% |
| AGCTTCAGTGTAGGAAATTC+TGG | - | chr1_2:19424249-19424268 | None:intergenic | 40.0% | |
| CAAGAAATCAGCTTCAGTGT+AGG | - | chr1_2:19424258-19424277 | None:intergenic | 40.0% | |
| ! | ACTGAAGCTGATTTCTTGTC+AGG | + | chr1_2:19424260-19424279 | Msa0061350:CDS | 40.0% |
| ! | AACTCTAGCTGCTTTCACTT+TGG | + | chr1_2:19424469-19424488 | Msa0061350:CDS | 40.0% |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1_2:19424476-19424495 | Msa0061350:CDS | 40.0% |
| ! | GCTTCAATTGTTGCTTCTAC+TGG | + | chr1_2:19424743-19424762 | Msa0061350:intron | 40.0% |
| AAACTTACGAAACACCGACA+AGG | - | chr1_2:19424772-19424791 | None:intergenic | 40.0% | |
| GTGGGAAACAATGACTAATG+TGG | + | chr1_2:19424836-19424855 | Msa0061350:intron | 40.0% | |
| GACTCTTAAAGTTCTTCGTG+CGG | - | chr1_2:19425341-19425360 | None:intergenic | 40.0% | |
| AGAGGAGTAGTAACCTCTTA+AGG | - | chr1_2:19423758-19423777 | None:intergenic | 40.0% | |
| ATCATGTCCCTTTCCAACTT+AGG | + | chr1_2:19423789-19423808 | Msa0061350:exon | 40.0% | |
| ! | ACTTCCACCTAAGTTGGAAA+GGG | - | chr1_2:19423799-19423818 | None:intergenic | 40.0% |
| GTGGGTCAGAAAGATCAAAT+GGG | - | chr1_2:19423893-19423912 | None:intergenic | 40.0% | |
| TGTGGGTCAGAAAGATCAAA+TGG | - | chr1_2:19423894-19423913 | None:intergenic | 40.0% | |
| ! | TCTTTCTGACCCACAGATTT+TGG | + | chr1_2:19423899-19423918 | Msa0061350:CDS | 40.0% |
| AGCTTCAGTGTAGGAAATTC+TGG | - | chr1_2:19424249-19424268 | None:intergenic | 40.0% | |
| CAAGAAATCAGCTTCAGTGT+AGG | - | chr1_2:19424258-19424277 | None:intergenic | 40.0% | |
| ! | ACTGAAGCTGATTTCTTGTC+AGG | + | chr1_2:19424260-19424279 | Msa0061350:CDS | 40.0% |
| ! | AACTCTAGCTGCTTTCACTT+TGG | + | chr1_2:19424469-19424488 | Msa0061350:CDS | 40.0% |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1_2:19424476-19424495 | Msa0061350:CDS | 40.0% |
| ! | GCTTCAATTGTTGCTTCTAC+TGG | + | chr1_2:19424743-19424762 | Msa0061350:intron | 40.0% |
| AAACTTACGAAACACCGACA+AGG | - | chr1_2:19424772-19424791 | None:intergenic | 40.0% | |
| GTGGGAAACAATGACTAATG+TGG | + | chr1_2:19424836-19424855 | Msa0061350:intron | 40.0% | |
| GACTCTTAAAGTTCTTCGTG+CGG | - | chr1_2:19425341-19425360 | None:intergenic | 40.0% | |
| ATGTCCCTTTCCAACTTAGG+TGG | + | chr1_2:19423792-19423811 | Msa0061350:CDS | 45.0% | |
| ! | CACTTCCACCTAAGTTGGAA+AGG | - | chr1_2:19423800-19423819 | None:intergenic | 45.0% |
| TGTGTCCAGTGTTGTACTTC+AGG | + | chr1_2:19423986-19424005 | Msa0061350:CDS | 45.0% | |
| GCAATGAGCATCATTACGTG+TGG | - | chr1_2:19424381-19424400 | None:intergenic | 45.0% | |
| GCGTACACCAAACAACACTA+TGG | + | chr1_2:19424399-19424418 | Msa0061350:CDS | 45.0% | |
| CATCCCATGAGTAAGATCTC+AGG | - | chr1_2:19424436-19424455 | None:intergenic | 45.0% | |
| TGTTGGATCACCTGAAAGAG+TGG | + | chr1_2:19424627-19424646 | Msa0061350:CDS | 45.0% | |
| GTTGGATCACCTGAAAGAGT+GGG | + | chr1_2:19424628-19424647 | Msa0061350:CDS | 45.0% | |
| ACCTGAAAGAGTGGGCAATA+TGG | + | chr1_2:19424636-19424655 | Msa0061350:CDS | 45.0% | |
| ACCATATTGCCCACTCTTTC+AGG | - | chr1_2:19424640-19424659 | None:intergenic | 45.0% | |
| GTCAAAGCAGGAACATCAAC+CGG | - | chr1_2:19424680-19424699 | None:intergenic | 45.0% | |
| GACTAATGTGGCCACAATTG+CGG | + | chr1_2:19424848-19424867 | Msa0061350:intron | 45.0% | |
| AGAGGCTTTCTCGCATTGTT+GGG | + | chr1_2:19425158-19425177 | Msa0061350:intron | 45.0% | |
| TGGGGAGTTGTATAAGCATC+TGG | + | chr1_2:19425177-19425196 | Msa0061350:CDS | 45.0% | |
| ATGTCCCTTTCCAACTTAGG+TGG | + | chr1_2:19423792-19423811 | Msa0061350:CDS | 45.0% | |
| ! | CACTTCCACCTAAGTTGGAA+AGG | - | chr1_2:19423800-19423819 | None:intergenic | 45.0% |
| TGTGTCCAGTGTTGTACTTC+AGG | + | chr1_2:19423986-19424005 | Msa0061350:CDS | 45.0% | |
| GCAATGAGCATCATTACGTG+TGG | - | chr1_2:19424381-19424400 | None:intergenic | 45.0% | |
| GCGTACACCAAACAACACTA+TGG | + | chr1_2:19424399-19424418 | Msa0061350:CDS | 45.0% | |
| CATCCCATGAGTAAGATCTC+AGG | - | chr1_2:19424436-19424455 | None:intergenic | 45.0% | |
| TGTTGGATCACCTGAAAGAG+TGG | + | chr1_2:19424627-19424646 | Msa0061350:CDS | 45.0% | |
| GTTGGATCACCTGAAAGAGT+GGG | + | chr1_2:19424628-19424647 | Msa0061350:CDS | 45.0% | |
| ACCTGAAAGAGTGGGCAATA+TGG | + | chr1_2:19424636-19424655 | Msa0061350:CDS | 45.0% | |
| ACCATATTGCCCACTCTTTC+AGG | - | chr1_2:19424640-19424659 | None:intergenic | 45.0% | |
| GTCAAAGCAGGAACATCAAC+CGG | - | chr1_2:19424680-19424699 | None:intergenic | 45.0% | |
| GACTAATGTGGCCACAATTG+CGG | + | chr1_2:19424848-19424867 | Msa0061350:intron | 45.0% | |
| AGAGGCTTTCTCGCATTGTT+GGG | + | chr1_2:19425158-19425177 | Msa0061350:intron | 45.0% | |
| TGGGGAGTTGTATAAGCATC+TGG | + | chr1_2:19425177-19425196 | Msa0061350:CDS | 45.0% | |
| AGTGGCACTTCCACCTAAGT+TGG | - | chr1_2:19423805-19423824 | None:intergenic | 50.0% | |
| !! | CCTTAACGGTGTCGCAACAA+CGG | + | chr1_2:19424511-19424530 | Msa0061350:CDS | 50.0% |
| TGGGCAATATGGTCTGCTGA+AGG | + | chr1_2:19424647-19424666 | Msa0061350:CDS | 50.0% | |
| GTCTGCTGAAGGCTATGATC+CGG | + | chr1_2:19424658-19424677 | Msa0061350:CDS | 50.0% | |
| GCTTCTACTGGCAACCTTGT+CGG | + | chr1_2:19424755-19424774 | Msa0061350:intron | 50.0% | |
| CAGCATCACAACCGCAATTG+TGG | - | chr1_2:19424862-19424881 | None:intergenic | 50.0% | |
| TTGCGGTTGTGATGCTGTTG+TGG | + | chr1_2:19424865-19424884 | Msa0061350:intron | 50.0% | |
| ! | GTGATGCTGTTGTGGTCTTG+TGG | + | chr1_2:19424873-19424892 | Msa0061350:intron | 50.0% |
| GAGAGGCTTTCTCGCATTGT+TGG | + | chr1_2:19425157-19425176 | Msa0061350:intron | 50.0% | |
| GAGGCTTTCTCGCATTGTTG+GGG | + | chr1_2:19425159-19425178 | Msa0061350:intron | 50.0% | |
| ! | AAAGCTTTGATCCACCGCGA+TGG | + | chr1_2:19425384-19425403 | Msa0061350:CDS | 50.0% |
| ! | GTGGACTATCAGTTCCATCG+CGG | - | chr1_2:19425401-19425420 | None:intergenic | 50.0% |
| AGTGGCACTTCCACCTAAGT+TGG | - | chr1_2:19423805-19423824 | None:intergenic | 50.0% | |
| !! | CCTTAACGGTGTCGCAACAA+CGG | + | chr1_2:19424511-19424530 | Msa0061350:CDS | 50.0% |
| TGGGCAATATGGTCTGCTGA+AGG | + | chr1_2:19424647-19424666 | Msa0061350:CDS | 50.0% | |
| GTCTGCTGAAGGCTATGATC+CGG | + | chr1_2:19424658-19424677 | Msa0061350:CDS | 50.0% | |
| GCTTCTACTGGCAACCTTGT+CGG | + | chr1_2:19424755-19424774 | Msa0061350:intron | 50.0% | |
| CAGCATCACAACCGCAATTG+TGG | - | chr1_2:19424862-19424881 | None:intergenic | 50.0% | |
| TTGCGGTTGTGATGCTGTTG+TGG | + | chr1_2:19424865-19424884 | Msa0061350:intron | 50.0% | |
| ! | GTGATGCTGTTGTGGTCTTG+TGG | + | chr1_2:19424873-19424892 | Msa0061350:intron | 50.0% |
| GAGAGGCTTTCTCGCATTGT+TGG | + | chr1_2:19425157-19425176 | Msa0061350:intron | 50.0% | |
| GAGGCTTTCTCGCATTGTTG+GGG | + | chr1_2:19425159-19425178 | Msa0061350:intron | 50.0% | |
| ! | AAAGCTTTGATCCACCGCGA+TGG | + | chr1_2:19425384-19425403 | Msa0061350:CDS | 50.0% |
| ! | GTGGACTATCAGTTCCATCG+CGG | - | chr1_2:19425401-19425420 | None:intergenic | 50.0% |
| CCGTTGTTGCGACACCGTTA+AGG | - | chr1_2:19424514-19424533 | None:intergenic | 55.0% | |
| GTCGCAACAACGGACACACT+TGG | + | chr1_2:19424521-19424540 | Msa0061350:CDS | 55.0% | |
| ! | TGCAAGGCGTCTGTCAAAGC+AGG | - | chr1_2:19424692-19424711 | None:intergenic | 55.0% |
| GACTATCAGTTCCATCGCGG+TGG | - | chr1_2:19425398-19425417 | None:intergenic | 55.0% | |
| CCGTTGTTGCGACACCGTTA+AGG | - | chr1_2:19424514-19424533 | None:intergenic | 55.0% | |
| GTCGCAACAACGGACACACT+TGG | + | chr1_2:19424521-19424540 | Msa0061350:CDS | 55.0% | |
| ! | TGCAAGGCGTCTGTCAAAGC+AGG | - | chr1_2:19424692-19424711 | None:intergenic | 55.0% |
| GACTATCAGTTCCATCGCGG+TGG | - | chr1_2:19425398-19425417 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 19423717 | 19425470 | 19423717 | ID=Msa0061350;Name=Msa0061350 |
| chr1_2 | mRNA | 19423717 | 19425470 | 19423717 | ID=Msa0061350-mRNA-1;Parent=Msa0061350;Name=Msa0061350-mRNA-1;_AED=0.16;_eAED=0.16;_QI=75|0.6|0.33|1|0.6|0.5|6|0|281 |
| chr1_2 | exon | 19423717 | 19424007 | 19423717 | ID=Msa0061350-mRNA-1:exon:7529;Parent=Msa0061350-mRNA-1 |
| chr1_2 | exon | 19424213 | 19424281 | 19424213 | ID=Msa0061350-mRNA-1:exon:7530;Parent=Msa0061350-mRNA-1 |
| chr1_2 | exon | 19424371 | 19424568 | 19424371 | ID=Msa0061350-mRNA-1:exon:7531;Parent=Msa0061350-mRNA-1 |
| chr1_2 | exon | 19424584 | 19424727 | 19424584 | ID=Msa0061350-mRNA-1:exon:7532;Parent=Msa0061350-mRNA-1 |
| chr1_2 | exon | 19425160 | 19425220 | 19425160 | ID=Msa0061350-mRNA-1:exon:7533;Parent=Msa0061350-mRNA-1 |
| chr1_2 | exon | 19425316 | 19425470 | 19425316 | ID=Msa0061350-mRNA-1:exon:7534;Parent=Msa0061350-mRNA-1 |
| chr1_2 | five_prime_UTR | 19423717 | 19423791 | 19423717 | ID=Msa0061350-mRNA-1:five_prime_utr;Parent=Msa0061350-mRNA-1 |
| chr1_2 | CDS | 19423792 | 19424007 | 19423792 | ID=Msa0061350-mRNA-1:cds;Parent=Msa0061350-mRNA-1 |
| chr1_2 | CDS | 19424213 | 19424281 | 19424213 | ID=Msa0061350-mRNA-1:cds;Parent=Msa0061350-mRNA-1 |
| chr1_2 | CDS | 19424371 | 19424568 | 19424371 | ID=Msa0061350-mRNA-1:cds;Parent=Msa0061350-mRNA-1 |
| chr1_2 | CDS | 19424584 | 19424727 | 19424584 | ID=Msa0061350-mRNA-1:cds;Parent=Msa0061350-mRNA-1 |
| chr1_2 | CDS | 19425160 | 19425220 | 19425160 | ID=Msa0061350-mRNA-1:cds;Parent=Msa0061350-mRNA-1 |
| chr1_2 | CDS | 19425316 | 19425470 | 19425316 | ID=Msa0061350-mRNA-1:cds;Parent=Msa0061350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
