Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125200 | XP_013468709.1 | 89.037 | 675 | 69 | 4 | 1 | 674 | 1 | 671 | 0.0 | 1230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125200 | sp|Q9SS87|SEOB_ARATH | 25.316 | 632 | 398 | 22 | 92 | 665 | 113 | 728 | 4.80e-44 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125200 | E2FKJ3 | 89.037 | 675 | 69 | 4 | 1 | 674 | 1 | 671 | 0.0 | 1230 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0125200 | 0.911025 | 9.689816e-83 | -8.615850e-47 |
| Msa0029960 | Msa0125200 | 0.893143 | 8.267562e-75 | -8.615850e-47 |
| Msa0029970 | Msa0125200 | 0.877760 | 4.850295e-69 | -8.615850e-47 |
| Msa0029990 | Msa0125200 | 0.848298 | 6.702631e-60 | -8.615850e-47 |
| Msa0034210 | Msa0125200 | 0.815675 | 8.188668e-52 | -8.615850e-47 |
| Msa0050660 | Msa0125200 | 0.835240 | 1.882458e-56 | -8.615850e-47 |
| Msa0050700 | Msa0125200 | 0.834239 | 3.362952e-56 | -8.615850e-47 |
| Msa0050790 | Msa0125200 | 0.825930 | 3.583444e-54 | -8.615850e-47 |
| Msa0061350 | Msa0125200 | 0.891876 | 2.661393e-74 | -8.615850e-47 |
| Msa0064120 | Msa0125200 | 0.889510 | 2.271616e-73 | -8.615850e-47 |
| Msa0071840 | Msa0125200 | 0.853020 | 3.149430e-61 | -8.615850e-47 |
| Msa0071850 | Msa0125200 | 0.901599 | 2.276491e-78 | -8.615850e-47 |
| Msa0071860 | Msa0125200 | 0.896674 | 2.939981e-76 | -8.615850e-47 |
| Msa0071880 | Msa0125200 | 0.861023 | 1.372835e-63 | -8.615850e-47 |
| Msa0108880 | Msa0125200 | 0.885568 | 7.271560e-72 | -8.615850e-47 |
| Msa0125200 | Msa0125210 | 0.890220 | 1.199167e-73 | -8.615850e-47 |
| Msa0125200 | Msa0128310 | 0.822967 | 1.783817e-53 | -8.615850e-47 |
| Msa0125200 | Msa0155180 | 0.878792 | 2.107239e-69 | -8.615850e-47 |
| Msa0125200 | Msa0174440 | 0.818039 | 2.412574e-52 | -8.615850e-47 |
| Msa0125200 | Msa0213030 | 0.823086 | 1.673651e-53 | -8.615850e-47 |
| Msa0125200 | Msa0230870 | 0.818026 | 2.430125e-52 | -8.615850e-47 |
| Msa0125200 | Msa0232760 | 0.810219 | 1.285038e-50 | -8.615850e-47 |
| Msa0125200 | Msa0382530 | 0.809745 | 1.625193e-50 | -8.615850e-47 |
| Msa0125200 | Msa0418970 | 0.847896 | 8.652333e-60 | -8.615850e-47 |
| Msa0125200 | Msa0432320 | 0.837549 | 4.867304e-57 | -8.615850e-47 |
| Msa0125200 | Msa0460550 | 0.861150 | 1.255620e-63 | -8.615850e-47 |
| Msa0125200 | Msa0460630 | 0.825909 | 3.624573e-54 | -8.615850e-47 |
| Msa0125200 | Msa0525210 | 0.812273 | 4.607027e-51 | -8.615850e-47 |
| Msa0125200 | Msa0528570 | 0.819171 | 1.336334e-52 | -8.615850e-47 |
| Msa0125200 | Msa0531960 | 0.806681 | 7.309416e-50 | -8.615850e-47 |
| Msa0125200 | Msa0562620 | 0.813171 | 2.928928e-51 | -8.615850e-47 |
| Msa0125200 | Msa0588920 | 0.806031 | 1.002042e-49 | -8.615850e-47 |
| Msa0125200 | Msa0621710 | 0.810020 | 1.418428e-50 | -8.615850e-47 |
| Msa0125200 | Msa0666700 | 0.810564 | 1.082588e-50 | -8.615850e-47 |
| Msa0125200 | Msa0699840 | 0.808781 | 2.616904e-50 | -8.615850e-47 |
| Msa0125200 | Msa0713960 | 0.810718 | 1.002563e-50 | -8.615850e-47 |
| Msa0125200 | Msa0738700 | 0.838631 | 2.563752e-57 | -8.615850e-47 |
| Msa0125200 | Msa0740090 | 0.810207 | 1.293007e-50 | -8.615850e-47 |
| Msa0125200 | Msa0743440 | 0.804982 | 1.663493e-49 | -8.615850e-47 |
| Msa0125200 | Msa0782750 | 0.826301 | 2.924513e-54 | -8.615850e-47 |
| Msa0125200 | Msa0820380 | 0.815948 | 7.114645e-52 | -8.615850e-47 |
| Msa0125200 | Msa0835350 | 0.804867 | 1.757937e-49 | -8.615850e-47 |
| Msa0125200 | Msa0859290 | 0.809958 | 1.462468e-50 | -8.615850e-47 |
| Msa0125200 | Msa0931590 | 0.804388 | 2.213053e-49 | -8.615850e-47 |
| Msa0125200 | Msa1014320 | 0.853421 | 2.416291e-61 | -8.615850e-47 |
| Msa0125200 | Msa1042160 | 0.813014 | 3.171675e-51 | -8.615850e-47 |
| Msa0125200 | Msa1042190 | 0.816059 | 6.721619e-52 | -8.615850e-47 |
| Msa0125200 | Msa1055310 | 0.843298 | 1.527183e-58 | -8.615850e-47 |
| Msa0125200 | Msa1078880 | 0.826385 | 2.792042e-54 | -8.615850e-47 |
| Msa0125200 | Msa1078970 | 0.817254 | 3.626801e-52 | -8.615850e-47 |
| Msa0125200 | Msa1081690 | 0.807873 | 4.085908e-50 | -8.615850e-47 |
| Msa0125200 | Msa1167470 | 0.810658 | 1.032913e-50 | -8.615850e-47 |
| Msa0125200 | Msa1169190 | 0.822931 | 1.818493e-53 | -8.615850e-47 |
| Msa0125200 | Msa1187760 | 0.810297 | 1.236182e-50 | -8.615850e-47 |
| Msa0125200 | Msa1268630 | 0.820080 | 8.284636e-53 | -8.615850e-47 |
| Msa0125200 | Msa1303650 | 0.801134 | 1.039106e-48 | -8.615850e-47 |
| Msa0125200 | Msa1380120 | 0.806666 | 7.361704e-50 | -8.615850e-47 |
| Msa0125200 | Msa1400010 | 0.807978 | 3.880792e-50 | -8.615850e-47 |
| Msa0125200 | Msa1415540 | 0.819727 | 9.980061e-53 | -8.615850e-47 |
| Msa0125200 | Msa1429860 | 0.813062 | 3.095900e-51 | -8.615850e-47 |
| Msa0125200 | Msa1435630 | 0.810486 | 1.125337e-50 | -8.615850e-47 |
| Msa0125200 | Msa1440630 | 0.827632 | 1.405099e-54 | -8.615850e-47 |
| Msa0125200 | Msa1452140 | 0.816570 | 5.167428e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125200 | MtrunA17_Chr1g0186981 | 89.037 | 675 | 69 | 4 | 1 | 674 | 1 | 671 | 0.0 | 1230 |
| Msa0125200 | MtrunA17_Chr1g0187001 | 59.282 | 641 | 247 | 10 | 31 | 668 | 9 | 638 | 0.0 | 770 |
| Msa0125200 | MtrunA17_Chr1g0186991 | 52.530 | 672 | 294 | 10 | 16 | 674 | 16 | 675 | 0.0 | 704 |
| Msa0125200 | MtrunA17_Chr1g0165791 | 42.693 | 698 | 359 | 12 | 6 | 674 | 1 | 686 | 0.0 | 552 |
| Msa0125200 | MtrunA17_Chr1g0186841 | 33.047 | 699 | 387 | 21 | 18 | 671 | 6 | 668 | 2.71e-97 | 313 |
| Msa0125200 | MtrunA17_Chr1g0186851 | 29.619 | 682 | 402 | 18 | 33 | 671 | 20 | 666 | 4.46e-87 | 286 |
| Msa0125200 | MtrunA17_Chr1g0186861 | 29.499 | 678 | 398 | 17 | 33 | 665 | 20 | 662 | 8.80e-83 | 275 |
| Msa0125200 | MtrunA17_Chr1g0187041 | 28.277 | 679 | 411 | 16 | 33 | 668 | 20 | 665 | 4.38e-80 | 268 |
| Msa0125200 | MtrunA17_Chr1g0186911 | 30.822 | 584 | 344 | 16 | 107 | 665 | 12 | 560 | 7.28e-76 | 253 |
| Msa0125200 | MtrunA17_Chr3g0116601 | 25.137 | 732 | 444 | 27 | 8 | 664 | 2 | 704 | 2.32e-46 | 175 |
| Msa0125200 | MtrunA17_Chr7g0226571 | 27.962 | 633 | 375 | 27 | 92 | 667 | 104 | 712 | 7.16e-45 | 171 |
| Msa0125200 | MtrunA17_Chr8g0381301 | 25.837 | 627 | 388 | 24 | 92 | 665 | 101 | 703 | 4.37e-39 | 154 |
| Msa0125200 | MtrunA17_Chr8g0364451 | 43.885 | 139 | 73 | 3 | 52 | 186 | 3 | 140 | 3.35e-23 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125200 | AT3G01680.1 | 25.316 | 632 | 398 | 22 | 92 | 665 | 113 | 728 | 4.88e-45 | 172 |
| Msa0125200 | AT3G01670.2 | 23.056 | 733 | 415 | 25 | 35 | 664 | 158 | 844 | 1.38e-31 | 132 |
| Msa0125200 | AT3G01670.1 | 23.056 | 733 | 415 | 25 | 35 | 664 | 134 | 820 | 1.58e-31 | 131 |
Find 153 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCCTGTCTTTGTTTAT+TGG | 0.122437 | 1_3:+53610549 | Msa0125200:CDS |
| GCTTATAGAGAGAGGCTTTC+TGG | 0.142359 | 1_3:+53610915 | Msa0125200:CDS |
| ATCACACACTACATATTATT+TGG | 0.156672 | 1_3:-53613025 | None:intergenic |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1_3:+53610311 | Msa0125200:CDS |
| CAAACGATCAACAATATCTT+TGG | 0.212916 | 1_3:-53611126 | None:intergenic |
| CTAACCGTGTTCCAAGTTTC+TGG | 0.231135 | 1_3:+53612478 | Msa0125200:CDS |
| TTATGTAATAGCCCTTTAAA+TGG | 0.231499 | 1_3:+53613050 | Msa0125200:three_prime_UTR |
| TGTGTCCAGTGTTGTAATTC+AGG | 0.237904 | 1_3:+53609820 | Msa0125200:CDS |
| GCATAGAAGCATTCCCATTT+AGG | 0.255874 | 1_3:+53611793 | Msa0125200:CDS |
| CCAACTCAAGTGTGAAATCT+TGG | 0.257534 | 1_3:-53612380 | None:intergenic |
| TAAAGAGTATTATGAGATTA+AGG | 0.261690 | 1_3:+53612737 | Msa0125200:CDS |
| GGGTTGAACACTGGGATTAT+AGG | 0.268887 | 1_3:-53611720 | None:intergenic |
| AGCTTCAGTGTAGGAAATTC+TGG | 0.283336 | 1_3:-53610081 | None:intergenic |
| ACGAATAAGAAGAACATAAC+TGG | 0.286128 | 1_3:-53613187 | None:intergenic |
| GGACATAACATTAAACTTCT+TGG | 0.288405 | 1_3:+53612627 | Msa0125200:CDS |
| GTGAATTTGTGGCATTCTTT+TGG | 0.296256 | 1_3:-53609673 | None:intergenic |
| AGTTGAAGTGGAGCTGGCTT+TGG | 0.302256 | 1_3:+53611838 | Msa0125200:CDS |
| CCGTTGTTGCGACGCGATTA+AGG | 0.303282 | 1_3:-53610346 | None:intergenic |
| TCAATGTAGCCTATTAATTC+TGG | 0.303319 | 1_3:-53611690 | None:intergenic |
| TCTTTCTGACCCACAGATCT+TGG | 0.328673 | 1_3:+53609733 | Msa0125200:CDS |
| ACACGTCCACACATAGGATT+TGG | 0.331012 | 1_3:-53612843 | None:intergenic |
| AAACTGGTTACAGAAATCTT+TGG | 0.333186 | 1_3:-53610054 | None:intergenic |
| AATCCGAAAGAACCAATAAA+AGG | 0.336470 | 1_3:+53611513 | Msa0125200:CDS |
| AATCAAACACCAAGGTTGTT+TGG | 0.339626 | 1_3:-53612912 | None:intergenic |
| CAGAAACTTGGAACACGGTT+AGG | 0.346769 | 1_3:-53612477 | None:intergenic |
| ATAAAAGATCCAGAATTAAT+AGG | 0.348273 | 1_3:+53611681 | Msa0125200:CDS |
| GACAGATACATCTTTATCTA+TGG | 0.353153 | 1_3:+53612330 | Msa0125200:CDS |
| TTCAGATGATGTATCTGAAT+TGG | 0.354961 | 1_3:+53610421 | Msa0125200:CDS |
| TGAGAAGTTGGTTGCGCAAC+TGG | 0.359692 | 1_3:+53610944 | Msa0125200:CDS |
| GTTACAGAAATCTTTGGAAT+AGG | 0.361025 | 1_3:-53610048 | None:intergenic |
| TTAAATATACAAACCTTAAG+AGG | 0.361830 | 1_3:+53609576 | Msa0125200:five_prime_UTR |
| AGGAAATTCTGGTTTGAAAC+TGG | 0.363197 | 1_3:-53610070 | None:intergenic |
| TCATGTCCCTTTCCAACTTA+GGG | 0.363443 | 1_3:+53609624 | Msa0125200:exon |
| CAAAACTAACCGATTTAACT+TGG | 0.368115 | 1_3:-53611205 | None:intergenic |
| TTGGCTCAAATTGCTATTAG+TGG | 0.371938 | 1_3:-53609654 | None:intergenic |
| TTAAGGTTTGTATATTTAAG+AGG | 0.376562 | 1_3:-53609572 | None:intergenic |
| AGAGGAAATGAATGATGGTT+TGG | 0.377654 | 1_3:-53609554 | None:intergenic |
| TTTATTCTCACCCATTTAAA+GGG | 0.378977 | 1_3:-53613061 | None:intergenic |
| AAACGATCAACAATATCTTT+GGG | 0.385496 | 1_3:-53611125 | None:intergenic |
| GATTGTCCACAAATCTTTGA+AGG | 0.387124 | 1_3:+53611176 | Msa0125200:CDS |
| AGAGGAGTAGTAACCTCTTA+AGG | 0.389066 | 1_3:-53609589 | None:intergenic |
| CAAGTCCATAGCATCTTCAT+TGG | 0.391630 | 1_3:-53611757 | None:intergenic |
| GCTTCAATTGTTGCTTCTAC+TGG | 0.392927 | 1_3:+53610578 | Msa0125200:CDS |
| ATCATGTCCCTTTCCAACTT+AGG | 0.393230 | 1_3:+53609623 | Msa0125200:exon |
| CTTTGGTTGAGTTTCAGTAT+TGG | 0.406676 | 1_3:+53612673 | Msa0125200:CDS |
| CCAAGATTTCACACTTGAGT+TGG | 0.414566 | 1_3:+53612380 | Msa0125200:CDS |
| GTCAAAGCAGGAACATCAAC+TGG | 0.416094 | 1_3:-53610512 | None:intergenic |
| ACTGAAGCTGATTTCTTGTC+AGG | 0.416605 | 1_3:+53610095 | Msa0125200:CDS |
| AAGAGCAACTCCTGGTATAC+AGG | 0.418681 | 1_3:+53611872 | Msa0125200:CDS |
| TTCCTTTAGGGTTGAACACT+GGG | 0.420420 | 1_3:-53611728 | None:intergenic |
| ACCTATAGTTCAAATGTTAT+AGG | 0.425924 | 1_3:+53612807 | Msa0125200:CDS |
| TCATCCCACTTGTTCACAAT+GGG | 0.429462 | 1_3:-53611570 | None:intergenic |
| AACTCTAGCTGCTTTCACTT+TGG | 0.432516 | 1_3:+53610304 | Msa0125200:CDS |
| ATCTTGGATCCATTTCTTGT+TGG | 0.434085 | 1_3:-53612364 | None:intergenic |
| GAAGAATCCATAGTGTTGTT+TGG | 0.438259 | 1_3:-53610241 | None:intergenic |
| TTCTGGCATTGTTGAGAAGT+TGG | 0.438330 | 1_3:+53610932 | Msa0125200:CDS |
| AGGCAATGTCCAAGTTAAAT+CGG | 0.441074 | 1_3:+53611196 | Msa0125200:CDS |
| ACTTCTTGGTCATGGCGAAC+CGG | 0.441169 | 1_3:+53612641 | Msa0125200:CDS |
| GTTGAAGTGGAGCTGGCTTT+GGG | 0.443006 | 1_3:+53611839 | Msa0125200:CDS |
| TGTGGGTCAGAAAGATCAAA+TGG | 0.446611 | 1_3:-53609725 | None:intergenic |
| TCTATACCCATCCAGAAACT+TGG | 0.447489 | 1_3:-53612489 | None:intergenic |
| ACCTATAACATTTGAACTAT+AGG | 0.448924 | 1_3:-53612808 | None:intergenic |
| TCAGAAAGATCAAATGGGTT+TGG | 0.449551 | 1_3:-53609719 | None:intergenic |
| TATTATAACGTCTGCACGCT+TGG | 0.452880 | 1_3:-53612427 | None:intergenic |
| ACCTGAATGTGTGGGCAAAA+TGG | 0.453372 | 1_3:+53610471 | Msa0125200:CDS |
| GCTTCTACTGGCAACCTTGT+CGG | 0.456049 | 1_3:+53610590 | Msa0125200:CDS |
| TATGTAATAGCCCTTTAAAT+GGG | 0.459129 | 1_3:+53613051 | Msa0125200:three_prime_UTR |
| TCATAAACTTCAATATCTTA+CGG | 0.460267 | 1_3:-53613155 | None:intergenic |
| TGAATTGGTCAAAGATATAG+TGG | 0.460524 | 1_3:+53610436 | Msa0125200:CDS |
| GCGTACACCAAACAACACTA+TGG | 0.462411 | 1_3:+53610234 | Msa0125200:CDS |
| TTTCACACTTGAGTTGGAAA+AGG | 0.472700 | 1_3:+53612386 | Msa0125200:CDS |
| ATCTTTATCTATGGAGGTAC+GGG | 0.477674 | 1_3:+53612339 | Msa0125200:CDS |
| CAAAGATATAGTGGATATGC+TGG | 0.480312 | 1_3:+53610445 | Msa0125200:CDS |
| GACAAAGTGTTGGAGAAAGC+AGG | 0.481405 | 1_3:+53612699 | Msa0125200:CDS |
| CATCCCATGAGTAAGATCTC+AGG | 0.482917 | 1_3:-53610268 | None:intergenic |
| CACGTCCACACATAGGATTT+GGG | 0.484874 | 1_3:-53612842 | None:intergenic |
| ATTTAAGAGGAAATGAATGA+TGG | 0.491046 | 1_3:-53609559 | None:intergenic |
| ACCTCAAGTTGAAGTGGAGC+TGG | 0.493519 | 1_3:+53611832 | Msa0125200:CDS |
| CAAAACCAATGAAGATGCTA+TGG | 0.494017 | 1_3:+53611752 | Msa0125200:CDS |
| ATCCCAGTGTTCAACCCTAA+AGG | 0.494042 | 1_3:+53611726 | Msa0125200:CDS |
| GTACGGGTACCAACAAGAAA+TGG | 0.495057 | 1_3:+53612355 | Msa0125200:CDS |
| TCTCATCTTGAATGCTATCA+AGG | 0.496200 | 1_3:-53611452 | None:intergenic |
| ATTCCTTTAGGGTTGAACAC+TGG | 0.496497 | 1_3:-53611729 | None:intergenic |
| TCAACCAAAGTTTGATGAGC+CGG | 0.500300 | 1_3:-53612660 | None:intergenic |
| CGAACCGGCTCATCAAACTT+TGG | 0.501643 | 1_3:+53612656 | Msa0125200:CDS |
| CATCTTTATCTATGGAGGTA+CGG | 0.504061 | 1_3:+53612338 | Msa0125200:CDS |
| ATTGTCCAATAAACAAAGAC+AGG | 0.505333 | 1_3:-53610554 | None:intergenic |
| AACATTAAACTTCTTGGTCA+TGG | 0.506435 | 1_3:+53612633 | Msa0125200:CDS |
| ACATTGCCTTCAAAGATTTG+TGG | 0.506858 | 1_3:-53611182 | None:intergenic |
| TGCAAGGCGTCTGTCAAAGC+AGG | 0.508357 | 1_3:-53610524 | None:intergenic |
| TTGAGTTGGAAAAGGTCAAA+AGG | 0.509353 | 1_3:+53612394 | Msa0125200:CDS |
| CCGTGTTCCAAGTTTCTGGA+TGG | 0.510982 | 1_3:+53612482 | Msa0125200:CDS |
| TCCTATGTGTGGACGTGTGA+TGG | 0.515222 | 1_3:+53612848 | Msa0125200:CDS |
| TATAATAGAGAATTATCAAG+TGG | 0.519025 | 1_3:+53612443 | Msa0125200:CDS |
| ACAACAAAAGCAAGTTAACT+TGG | 0.522931 | 1_3:-53612954 | None:intergenic |
| AGAAACTTGGAACACGGTTA+GGG | 0.531778 | 1_3:-53612476 | None:intergenic |
| AAAACCTGAGATCTTACTCA+TGG | 0.549235 | 1_3:+53610264 | Msa0125200:CDS |
| TGCTGGATCACCTGAATGTG+TGG | 0.556986 | 1_3:+53610462 | Msa0125200:CDS |
| CGTGTTCCAAGTTTCTGGAT+GGG | 0.560177 | 1_3:+53612483 | Msa0125200:CDS |
| AGACTCTTTCCAAGATCTGT+GGG | 0.560401 | 1_3:-53609742 | None:intergenic |
| TGATGTGATTCAGGTGAAAG+TGG | 0.562041 | 1_3:+53612308 | Msa0125200:intron |
| GACAATCAGTTCCATTGCGG+TGG | 0.564546 | 1_3:-53611160 | None:intergenic |
| CGTGATGAGCCAAACAACCT+TGG | 0.570697 | 1_3:+53612903 | Msa0125200:CDS |
| ACAAAGTGTTGGAGAAAGCA+GGG | 0.576612 | 1_3:+53612700 | Msa0125200:CDS |
| AAGAAGACTTCAAGATTCTG+TGG | 0.578055 | 1_3:+53611544 | Msa0125200:CDS |
| GCCAGCTCCACTTCAACTTG+AGG | 0.578077 | 1_3:-53611833 | None:intergenic |
| GTACTAACCTCAAGTTGAAG+TGG | 0.578286 | 1_3:+53611826 | Msa0125200:CDS |
| AAAGCTTTGATCCACCGCAA+TGG | 0.579125 | 1_3:+53611149 | Msa0125200:CDS |
| GTCGCAACAACGGACACACT+TGG | 0.580000 | 1_3:+53610356 | Msa0125200:CDS |
| ATCATCCCACTTGTTCACAA+TGG | 0.581732 | 1_3:-53611571 | None:intergenic |
| AATGGGTGAGAATAAAAGAG+TGG | 0.583399 | 1_3:+53613068 | Msa0125200:three_prime_UTR |
| CTTAGAATAATCCATCCTTG+TGG | 0.583984 | 1_3:-53612600 | None:intergenic |
| CATGTCCCTTTCCAACTTAG+GGG | 0.585673 | 1_3:+53609625 | Msa0125200:exon |
| CGAATAAGAAGAACATAACT+GGG | 0.589294 | 1_3:-53613186 | None:intergenic |
| TAGACTCTTTCCAAGATCTG+TGG | 0.589841 | 1_3:-53609743 | None:intergenic |
| GTCATCAAAAGAGCAACTCC+TGG | 0.591771 | 1_3:+53611864 | Msa0125200:CDS |
| GTGGGTCAGAAAGATCAAAT+GGG | 0.593934 | 1_3:-53609724 | None:intergenic |
| AATTATCAGCTTATAGAGAG+AGG | 0.595338 | 1_3:+53610907 | Msa0125200:CDS |
| ATCCTTGTGGATCACGTCTG+AGG | 0.598062 | 1_3:-53612587 | None:intergenic |
| TTCCCATTTAGGAAAAGTGA+TGG | 0.598584 | 1_3:+53611804 | Msa0125200:CDS |
| CCTTAATCGCGTCGCAACAA+CGG | 0.601752 | 1_3:+53610346 | Msa0125200:CDS |
| CAAGAAATCAGCTTCAGTGT+AGG | 0.603259 | 1_3:-53610090 | None:intergenic |
| TATAACCTGAATTACAACAC+TGG | 0.604733 | 1_3:-53609825 | None:intergenic |
| GTATTGGAAAGACAAAGTGT+TGG | 0.608082 | 1_3:+53612689 | Msa0125200:CDS |
| AAAGACAGGAATTTCTTGCA+AGG | 0.611562 | 1_3:-53610540 | None:intergenic |
| GGATGGATTATTCTAAGCAA+AGG | 0.614321 | 1_3:+53612606 | Msa0125200:CDS |
| AAACCTGAGATCTTACTCAT+GGG | 0.614423 | 1_3:+53610265 | Msa0125200:CDS |
| CAAGAAGCATCAAGAGACTG+TGG | 0.617134 | 1_3:+53612527 | Msa0125200:CDS |
| GGAATGCTTCTATGCCCCAT+TGG | 0.617439 | 1_3:-53611785 | None:intergenic |
| TCAGACGTGATCCACAAGGA+TGG | 0.618814 | 1_3:+53612589 | Msa0125200:CDS |
| ATAATAGAGAATTATCAAGT+GGG | 0.621818 | 1_3:+53612444 | Msa0125200:CDS |
| TCATGCCCAAATCCTATGTG+TGG | 0.622369 | 1_3:+53612837 | Msa0125200:CDS |
| ATGTCCCTTTCCAACTTAGG+GGG | 0.623414 | 1_3:+53609626 | Msa0125200:CDS |
| AATTTCAAAACATTGAAGAG+TGG | 0.627666 | 1_3:+53611606 | Msa0125200:CDS |
| TGCCTCAGACGTGATCCACA+AGG | 0.631014 | 1_3:+53612585 | Msa0125200:CDS |
| ACATGATGACTCAATATGAG+AGG | 0.635696 | 1_3:-53609607 | None:intergenic |
| GACTCTTAAAGTTATTCGTG+CGG | 0.635928 | 1_3:-53611103 | None:intergenic |
| GAGAAGTTGGTTGCGCAACT+GGG | 0.641871 | 1_3:+53610945 | Msa0125200:CDS |
| TGGGCAAAATGGTCTGCTGA+AGG | 0.644541 | 1_3:+53610482 | Msa0125200:CDS |
| CTCACTTGAATCAAACACCA+AGG | 0.644971 | 1_3:-53612920 | None:intergenic |
| CCATCCAGAAACTTGGAACA+CGG | 0.647174 | 1_3:-53612482 | None:intergenic |
| GGATCCCCATTGTGAACAAG+TGG | 0.649592 | 1_3:+53611565 | Msa0125200:CDS |
| AGATACATCTTTATCTATGG+AGG | 0.650594 | 1_3:+53612333 | Msa0125200:CDS |
| TCCATCACACGTCCACACAT+AGG | 0.651294 | 1_3:-53612849 | None:intergenic |
| GTGGACAATCAGTTCCATTG+CGG | 0.652857 | 1_3:-53611163 | None:intergenic |
| GGTTGTTTGGCTCATCACGA+TGG | 0.661653 | 1_3:-53612899 | None:intergenic |
| AAACTTACGAAACACCGACA+AGG | 0.675763 | 1_3:-53610604 | None:intergenic |
| TATGTGTGGACGTGTGATGG+AGG | 0.691965 | 1_3:+53612851 | Msa0125200:CDS |
| GCAATGAGCATCATTACGTG+TGG | 0.696376 | 1_3:-53610213 | None:intergenic |
| GCTGGATCACCTGAATGTGT+GGG | 0.704983 | 1_3:+53610463 | Msa0125200:CDS |
| TCAACATTAAGAACTTCACA+TGG | 0.707918 | 1_3:-53612783 | None:intergenic |
| CATCCCACTTGTTCACAATG+GGG | 0.719744 | 1_3:-53611569 | None:intergenic |
| GATCCCCATTGTGAACAAGT+GGG | 0.735559 | 1_3:+53611566 | Msa0125200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGAATAATTTTGATATA+TGG | + | chr1_3:53611908-53611927 | Msa0125200:intron | 10.0% |
| !! | TATAAAAATTATAAACAATG+TGG | + | chr1_3:53611947-53611966 | Msa0125200:intron | 10.0% |
| !! | AAAATATATACATTAGATCA+TGG | + | chr1_3:53609915-53609934 | Msa0125200:intron | 15.0% |
| !! | TGATGATAAAATAATAACAT+TGG | + | chr1_3:53609942-53609961 | Msa0125200:intron | 15.0% |
| !!! | TCTAACAATAATATTTTTTG+TGG | - | chr1_3:53610737-53610756 | None:intergenic | 15.0% |
| !!! | TCATTTTACTTCTTTTTAAT+TGG | - | chr1_3:53611975-53611994 | None:intergenic | 15.0% |
| !! | TTAAGGTTTGTATATTTAAG+AGG | - | chr1_3:53609575-53609594 | None:intergenic | 20.0% |
| !! | TTAAATATACAAACCTTAAG+AGG | + | chr1_3:53609576-53609595 | Msa0125200:five_prime_UTR | 20.0% |
| !! | TTTAAAGACTTCAATTGATA+TGG | - | chr1_3:53609898-53609917 | None:intergenic | 20.0% |
| !! | TAAAGAACTAATGCATAAAA+GGG | - | chr1_3:53609993-53610012 | None:intergenic | 20.0% |
| !! | TTAAAGAACTAATGCATAAA+AGG | - | chr1_3:53609994-53610013 | None:intergenic | 20.0% |
| !!! | ATTACTTATCTTTGTTTTCT+AGG | + | chr1_3:53610877-53610896 | Msa0125200:intron | 20.0% |
| !!! | TTACTTATCTTTGTTTTCTA+GGG | + | chr1_3:53610878-53610897 | Msa0125200:intron | 20.0% |
| !! | TTCATTTATGTAATATTGCA+GGG | + | chr1_3:53611384-53611403 | Msa0125200:intron | 20.0% |
| !! | ATAAAAGATCCAGAATTAAT+AGG | + | chr1_3:53611681-53611700 | Msa0125200:CDS | 20.0% |
| !! | TCAAAATTATTCAAATTGTG+AGG | - | chr1_3:53611904-53611923 | None:intergenic | 20.0% |
| !!! | ATGATTATTTTCTGATCAAT+TGG | + | chr1_3:53611991-53612010 | Msa0125200:intron | 20.0% |
| !! | AGACATTATAACCAATTAAA+GGG | - | chr1_3:53612242-53612261 | None:intergenic | 20.0% |
| !! | TATAATAGAGAATTATCAAG+TGG | + | chr1_3:53612443-53612462 | Msa0125200:CDS | 20.0% |
| !! | ATAATAGAGAATTATCAAGT+GGG | + | chr1_3:53612444-53612463 | Msa0125200:CDS | 20.0% |
| !!! | TAAAGAGTATTATGAGATTA+AGG | + | chr1_3:53612737-53612756 | Msa0125200:CDS | 20.0% |
| !! | TCATAAACTTCAATATCTTA+CGG | - | chr1_3:53613158-53613177 | None:intergenic | 20.0% |
| ! | ATTTAAGAGGAAATGAATGA+TGG | - | chr1_3:53609562-53609581 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTAGTGAATTTG+TGG | - | chr1_3:53609687-53609706 | None:intergenic | 25.0% |
| ! | TGTGTTATCTTAGTAGATTA+AGG | + | chr1_3:53610136-53610155 | Msa0125200:intron | 25.0% |
| !! | AAATTCCTGTCTTTGTTTAT+TGG | + | chr1_3:53610549-53610568 | Msa0125200:CDS | 25.0% |
| ! | TTGATATTACGGAAAAATGT+GGG | + | chr1_3:53610653-53610672 | Msa0125200:intron | 25.0% |
| ! | AAACGATCAACAATATCTTT+GGG | - | chr1_3:53611128-53611147 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGAAACATGTAGT+AGG | + | chr1_3:53611219-53611238 | Msa0125200:intron | 25.0% |
| ! | GTTCATTTATGTAATATTGC+AGG | + | chr1_3:53611383-53611402 | Msa0125200:intron | 25.0% |
| !!! | AAACCTTTTATTGGTTCTTT+CGG | - | chr1_3:53611519-53611538 | None:intergenic | 25.0% |
| !! | TCTTTCTTGAAACCTTTTAT+TGG | - | chr1_3:53611528-53611547 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAATTTTCTCTC+TGG | - | chr1_3:53611599-53611618 | None:intergenic | 25.0% |
| ! | AATTTCAAAACATTGAAGAG+TGG | + | chr1_3:53611606-53611625 | Msa0125200:CDS | 25.0% |
| ! | ATCAATTGGTTATACTATCT+TGG | + | chr1_3:53612005-53612024 | Msa0125200:intron | 25.0% |
| ! | CAGACATTATAACCAATTAA+AGG | - | chr1_3:53612243-53612262 | None:intergenic | 25.0% |
| ! | ACCTATAGTTCAAATGTTAT+AGG | + | chr1_3:53612807-53612826 | Msa0125200:CDS | 25.0% |
| ! | ACCTATAACATTTGAACTAT+AGG | - | chr1_3:53612811-53612830 | None:intergenic | 25.0% |
| ! | ATCACACACTACATATTATT+TGG | - | chr1_3:53613028-53613047 | None:intergenic | 25.0% |
| ! | TTATGTAATAGCCCTTTAAA+TGG | + | chr1_3:53613050-53613069 | Msa0125200:three_prime_UTR | 25.0% |
| ! | TATGTAATAGCCCTTTAAAT+GGG | + | chr1_3:53613051-53613070 | Msa0125200:three_prime_UTR | 25.0% |
| ! | TTTATTCTCACCCATTTAAA+GGG | - | chr1_3:53613064-53613083 | None:intergenic | 25.0% |
| !! | TTTTATTCTCACCCATTTAA+AGG | - | chr1_3:53613065-53613084 | None:intergenic | 25.0% |
| TATAACCTGAATTACAACAC+TGG | - | chr1_3:53609828-53609847 | None:intergenic | 30.0% | |
| !! | GTTACAGAAATCTTTGGAAT+AGG | - | chr1_3:53610051-53610070 | None:intergenic | 30.0% |
| AAACTGGTTACAGAAATCTT+TGG | - | chr1_3:53610057-53610076 | None:intergenic | 30.0% | |
| TTCAGATGATGTATCTGAAT+TGG | + | chr1_3:53610421-53610440 | Msa0125200:CDS | 30.0% | |
| TGAATTGGTCAAAGATATAG+TGG | + | chr1_3:53610436-53610455 | Msa0125200:CDS | 30.0% | |
| ATTGTCCAATAAACAAAGAC+AGG | - | chr1_3:53610557-53610576 | None:intergenic | 30.0% | |
| CTATGCAAACCTTGATATTA+CGG | + | chr1_3:53610642-53610661 | Msa0125200:intron | 30.0% | |
| ! | CACATTTTTCCGTAATATCA+AGG | - | chr1_3:53610654-53610673 | None:intergenic | 30.0% |
| CTTGATATTACGGAAAAATG+TGG | + | chr1_3:53610652-53610671 | Msa0125200:intron | 30.0% | |
| AATTATCAGCTTATAGAGAG+AGG | + | chr1_3:53610907-53610926 | Msa0125200:CDS | 30.0% | |
| TTTGTGATCAAAATCTCAGA+GGG | - | chr1_3:53611024-53611043 | None:intergenic | 30.0% | |
| ATTTGTGATCAAAATCTCAG+AGG | - | chr1_3:53611025-53611044 | None:intergenic | 30.0% | |
| ! | AGCTTATATCTATTTGTTGC+AGG | + | chr1_3:53611059-53611078 | Msa0125200:intron | 30.0% |
| CAAACGATCAACAATATCTT+TGG | - | chr1_3:53611129-53611148 | None:intergenic | 30.0% | |
| ! | CAAAACTAACCGATTTAACT+TGG | - | chr1_3:53611208-53611227 | None:intergenic | 30.0% |
| AATCCGAAAGAACCAATAAA+AGG | + | chr1_3:53611513-53611532 | Msa0125200:CDS | 30.0% | |
| ! | TGGCATCAAATTTTATGTAG+TGG | + | chr1_3:53611626-53611645 | Msa0125200:CDS | 30.0% |
| ! | CTGGATCTTTTATTATCTTG+AGG | - | chr1_3:53611674-53611693 | None:intergenic | 30.0% |
| TCAATGTAGCCTATTAATTC+TGG | - | chr1_3:53611693-53611712 | None:intergenic | 30.0% | |
| !!! | CATTGGTTTTGATTCCTTTA+GGG | - | chr1_3:53611743-53611762 | None:intergenic | 30.0% |
| !!! | TCATTGGTTTTGATTCCTTT+AGG | - | chr1_3:53611744-53611763 | None:intergenic | 30.0% |
| ! | TATGGACTTGATTTTCCAAT+GGG | + | chr1_3:53611770-53611789 | Msa0125200:CDS | 30.0% |
| !! | TACCATCACTTTTCCTAAAT+GGG | - | chr1_3:53611809-53611828 | None:intergenic | 30.0% |
| CTCATTTAATGATGTGATTC+AGG | + | chr1_3:53612299-53612318 | Msa0125200:intron | 30.0% | |
| GACAGATACATCTTTATCTA+TGG | + | chr1_3:53612330-53612349 | Msa0125200:CDS | 30.0% | |
| AGATACATCTTTATCTATGG+AGG | + | chr1_3:53612333-53612352 | Msa0125200:CDS | 30.0% | |
| GGACATAACATTAAACTTCT+TGG | + | chr1_3:53612627-53612646 | Msa0125200:CDS | 30.0% | |
| AACATTAAACTTCTTGGTCA+TGG | + | chr1_3:53612633-53612652 | Msa0125200:CDS | 30.0% | |
| TCAACATTAAGAACTTCACA+TGG | - | chr1_3:53612786-53612805 | None:intergenic | 30.0% | |
| ACAACAAAAGCAAGTTAACT+TGG | - | chr1_3:53612957-53612976 | None:intergenic | 30.0% | |
| CGAATAAGAAGAACATAACT+GGG | - | chr1_3:53613189-53613208 | None:intergenic | 30.0% | |
| ACGAATAAGAAGAACATAAC+TGG | - | chr1_3:53613190-53613209 | None:intergenic | 30.0% | |
| AGAGGAAATGAATGATGGTT+TGG | - | chr1_3:53609557-53609576 | None:intergenic | 35.0% | |
| ACATGATGACTCAATATGAG+AGG | - | chr1_3:53609610-53609629 | None:intergenic | 35.0% | |
| ! | TTGGCTCAAATTGCTATTAG+TGG | - | chr1_3:53609657-53609676 | None:intergenic | 35.0% |
| ! | GTGAATTTGTGGCATTCTTT+TGG | - | chr1_3:53609676-53609695 | None:intergenic | 35.0% |
| ! | TCAGAAAGATCAAATGGGTT+TGG | - | chr1_3:53609722-53609741 | None:intergenic | 35.0% |
| !! | AGGAAATTCTGGTTTGAAAC+TGG | - | chr1_3:53610073-53610092 | None:intergenic | 35.0% |
| ! | GAAGAATCCATAGTGTTGTT+TGG | - | chr1_3:53610244-53610263 | None:intergenic | 35.0% |
| AAAACCTGAGATCTTACTCA+TGG | + | chr1_3:53610264-53610283 | Msa0125200:CDS | 35.0% | |
| AAACCTGAGATCTTACTCAT+GGG | + | chr1_3:53610265-53610284 | Msa0125200:CDS | 35.0% | |
| !! | CAAAGATATAGTGGATATGC+TGG | + | chr1_3:53610445-53610464 | Msa0125200:CDS | 35.0% |
| AAAGACAGGAATTTCTTGCA+AGG | - | chr1_3:53610543-53610562 | None:intergenic | 35.0% | |
| ! | CGGTGTTTCGTAAGTTTTTA+TGG | + | chr1_3:53610610-53610629 | Msa0125200:intron | 35.0% |
| GACTCTTAAAGTTATTCGTG+CGG | - | chr1_3:53611106-53611125 | None:intergenic | 35.0% | |
| GATTGTCCACAAATCTTTGA+AGG | + | chr1_3:53611176-53611195 | Msa0125200:CDS | 35.0% | |
| ACATTGCCTTCAAAGATTTG+TGG | - | chr1_3:53611185-53611204 | None:intergenic | 35.0% | |
| AGGCAATGTCCAAGTTAAAT+CGG | + | chr1_3:53611196-53611215 | Msa0125200:CDS | 35.0% | |
| TCTCATCTTGAATGCTATCA+AGG | - | chr1_3:53611455-53611474 | None:intergenic | 35.0% | |
| AAGAAGACTTCAAGATTCTG+TGG | + | chr1_3:53611544-53611563 | Msa0125200:CDS | 35.0% | |
| ! | TCTTTTATTATCTTGAGGCC+TGG | - | chr1_3:53611669-53611688 | None:intergenic | 35.0% |
| CAAAACCAATGAAGATGCTA+TGG | + | chr1_3:53611752-53611771 | Msa0125200:CDS | 35.0% | |
| ! | CTATGGACTTGATTTTCCAA+TGG | + | chr1_3:53611769-53611788 | Msa0125200:CDS | 35.0% |
| ! | ATGGACTTGATTTTCCAATG+GGG | + | chr1_3:53611771-53611790 | Msa0125200:CDS | 35.0% |
| TTCCCATTTAGGAAAAGTGA+TGG | + | chr1_3:53611804-53611823 | Msa0125200:CDS | 35.0% | |
| !! | GTACCATCACTTTTCCTAAA+TGG | - | chr1_3:53611810-53611829 | None:intergenic | 35.0% |
| TTATACTATCTTGGCGCAAT+TGG | + | chr1_3:53612014-53612033 | Msa0125200:intron | 35.0% | |
| TAACCAATTAAAGGGCAATC+TGG | - | chr1_3:53612234-53612253 | None:intergenic | 35.0% | |
| CATCTTTATCTATGGAGGTA+CGG | + | chr1_3:53612338-53612357 | Msa0125200:CDS | 35.0% | |
| ! | ATCTTTATCTATGGAGGTAC+GGG | + | chr1_3:53612339-53612358 | Msa0125200:CDS | 35.0% |
| ATCTTGGATCCATTTCTTGT+TGG | - | chr1_3:53612367-53612386 | None:intergenic | 35.0% | |
| !! | TTTCACACTTGAGTTGGAAA+AGG | + | chr1_3:53612386-53612405 | Msa0125200:CDS | 35.0% |
| !! | TTGAGTTGGAAAAGGTCAAA+AGG | + | chr1_3:53612394-53612413 | Msa0125200:CDS | 35.0% |
| CTTAGAATAATCCATCCTTG+TGG | - | chr1_3:53612603-53612622 | None:intergenic | 35.0% | |
| !! | GGATGGATTATTCTAAGCAA+AGG | + | chr1_3:53612606-53612625 | Msa0125200:CDS | 35.0% |
| CTTTGGTTGAGTTTCAGTAT+TGG | + | chr1_3:53612673-53612692 | Msa0125200:CDS | 35.0% | |
| GTATTGGAAAGACAAAGTGT+TGG | + | chr1_3:53612689-53612708 | Msa0125200:CDS | 35.0% | |
| AATCAAACACCAAGGTTGTT+TGG | - | chr1_3:53612915-53612934 | None:intergenic | 35.0% | |
| AATGGGTGAGAATAAAAGAG+TGG | + | chr1_3:53613068-53613087 | Msa0125200:three_prime_UTR | 35.0% | |
| AGAGGAGTAGTAACCTCTTA+AGG | - | chr1_3:53609592-53609611 | None:intergenic | 40.0% | |
| ATCATGTCCCTTTCCAACTT+AGG | + | chr1_3:53609623-53609642 | Msa0125200:exon | 40.0% | |
| TCATGTCCCTTTCCAACTTA+GGG | + | chr1_3:53609624-53609643 | Msa0125200:exon | 40.0% | |
| GTGGGTCAGAAAGATCAAAT+GGG | - | chr1_3:53609727-53609746 | None:intergenic | 40.0% | |
| TGTGGGTCAGAAAGATCAAA+TGG | - | chr1_3:53609728-53609747 | None:intergenic | 40.0% | |
| AGACTCTTTCCAAGATCTGT+GGG | - | chr1_3:53609745-53609764 | None:intergenic | 40.0% | |
| TAGACTCTTTCCAAGATCTG+TGG | - | chr1_3:53609746-53609765 | None:intergenic | 40.0% | |
| TGTGTCCAGTGTTGTAATTC+AGG | + | chr1_3:53609820-53609839 | Msa0125200:CDS | 40.0% | |
| AGCTTCAGTGTAGGAAATTC+TGG | - | chr1_3:53610084-53610103 | None:intergenic | 40.0% | |
| CAAGAAATCAGCTTCAGTGT+AGG | - | chr1_3:53610093-53610112 | None:intergenic | 40.0% | |
| ! | ACTGAAGCTGATTTCTTGTC+AGG | + | chr1_3:53610095-53610114 | Msa0125200:CDS | 40.0% |
| ! | AACTCTAGCTGCTTTCACTT+TGG | + | chr1_3:53610304-53610323 | Msa0125200:CDS | 40.0% |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1_3:53610311-53610330 | Msa0125200:CDS | 40.0% |
| ! | GCTTCAATTGTTGCTTCTAC+TGG | + | chr1_3:53610578-53610597 | Msa0125200:CDS | 40.0% |
| AAACTTACGAAACACCGACA+AGG | - | chr1_3:53610607-53610626 | None:intergenic | 40.0% | |
| GTGGGAAACAATGACTAATG+TGG | + | chr1_3:53610671-53610690 | Msa0125200:intron | 40.0% | |
| TTCTGGCATTGTTGAGAAGT+TGG | + | chr1_3:53610932-53610951 | Msa0125200:CDS | 40.0% | |
| ! | TGCGAGTGTTGTAAACTCTA+AGG | - | chr1_3:53611259-53611278 | None:intergenic | 40.0% |
| TCATCCCACTTGTTCACAAT+GGG | - | chr1_3:53611573-53611592 | None:intergenic | 40.0% | |
| ATCATCCCACTTGTTCACAA+TGG | - | chr1_3:53611574-53611593 | None:intergenic | 40.0% | |
| ! | GAGTACTTTTCTGAGTTACC+AGG | + | chr1_3:53611648-53611667 | Msa0125200:CDS | 40.0% |
| !! | TTCCTTTAGGGTTGAACACT+GGG | - | chr1_3:53611731-53611750 | None:intergenic | 40.0% |
| !! | ATTCCTTTAGGGTTGAACAC+TGG | - | chr1_3:53611732-53611751 | None:intergenic | 40.0% |
| CAAGTCCATAGCATCTTCAT+TGG | - | chr1_3:53611760-53611779 | None:intergenic | 40.0% | |
| !! | GCATAGAAGCATTCCCATTT+AGG | + | chr1_3:53611793-53611812 | Msa0125200:CDS | 40.0% |
| !! | GTACTAACCTCAAGTTGAAG+TGG | + | chr1_3:53611826-53611845 | Msa0125200:CDS | 40.0% |
| ! | GAGGTTTTTACCTGTATACC+AGG | - | chr1_3:53611885-53611904 | None:intergenic | 40.0% |
| GTTGATGTCATGTGACTGAA+AGG | + | chr1_3:53612041-53612060 | Msa0125200:intron | 40.0% | |
| GTTGATGTCATGTGACTGAA+AGG | + | chr1_3:53612041-53612060 | Msa0125200:intron | 40.0% | |
| !!! | TACCTGTTTTTACACACGAG+AGG | - | chr1_3:53612142-53612161 | None:intergenic | 40.0% |
| CTCGTGTGTAAAAACAGGTA+AGG | + | chr1_3:53612142-53612161 | Msa0125200:intron | 40.0% | |
| GCTGCATACAATACACCAAA+TGG | + | chr1_3:53612164-53612183 | Msa0125200:intron | 40.0% | |
| TGATGTGATTCAGGTGAAAG+TGG | + | chr1_3:53612308-53612327 | Msa0125200:intron | 40.0% | |
| CCAACTCAAGTGTGAAATCT+TGG | - | chr1_3:53612383-53612402 | None:intergenic | 40.0% | |
| CCAAGATTTCACACTTGAGT+TGG | + | chr1_3:53612380-53612399 | Msa0125200:CDS | 40.0% | |
| TATTATAACGTCTGCACGCT+TGG | - | chr1_3:53612430-53612449 | None:intergenic | 40.0% | |
| AGAAACTTGGAACACGGTTA+GGG | - | chr1_3:53612479-53612498 | None:intergenic | 40.0% | |
| TCTATACCCATCCAGAAACT+TGG | - | chr1_3:53612492-53612511 | None:intergenic | 40.0% | |
| TCAACCAAAGTTTGATGAGC+CGG | - | chr1_3:53612663-53612682 | None:intergenic | 40.0% | |
| !! | ACAAAGTGTTGGAGAAAGCA+GGG | + | chr1_3:53612700-53612719 | Msa0125200:CDS | 40.0% |
| CTCACTTGAATCAAACACCA+AGG | - | chr1_3:53612923-53612942 | None:intergenic | 40.0% | |
| CATGTCCCTTTCCAACTTAG+GGG | + | chr1_3:53609625-53609644 | Msa0125200:exon | 45.0% | |
| ATGTCCCTTTCCAACTTAGG+GGG | + | chr1_3:53609626-53609645 | Msa0125200:CDS | 45.0% | |
| ! | ACTTCCCCCTAAGTTGGAAA+GGG | - | chr1_3:53609633-53609652 | None:intergenic | 45.0% |
| TCTTTCTGACCCACAGATCT+TGG | + | chr1_3:53609733-53609752 | Msa0125200:CDS | 45.0% | |
| GCAATGAGCATCATTACGTG+TGG | - | chr1_3:53610216-53610235 | None:intergenic | 45.0% | |
| GCGTACACCAAACAACACTA+TGG | + | chr1_3:53610234-53610253 | Msa0125200:CDS | 45.0% | |
| CATCCCATGAGTAAGATCTC+AGG | - | chr1_3:53610271-53610290 | None:intergenic | 45.0% | |
| ACCTGAATGTGTGGGCAAAA+TGG | + | chr1_3:53610471-53610490 | Msa0125200:CDS | 45.0% | |
| ! | ACCATTTTGCCCACACATTC+AGG | - | chr1_3:53610475-53610494 | None:intergenic | 45.0% |
| GTCAAAGCAGGAACATCAAC+TGG | - | chr1_3:53610515-53610534 | None:intergenic | 45.0% | |
| CAGCATCACAACTGCAATTG+TGG | - | chr1_3:53610697-53610716 | None:intergenic | 45.0% | |
| GCTTATAGAGAGAGGCTTTC+TGG | + | chr1_3:53610915-53610934 | Msa0125200:CDS | 45.0% | |
| ! | AAAGCTTTGATCCACCGCAA+TGG | + | chr1_3:53611149-53611168 | Msa0125200:CDS | 45.0% |
| GTGGACAATCAGTTCCATTG+CGG | - | chr1_3:53611166-53611185 | None:intergenic | 45.0% | |
| CAATCATTTGCGCTAGACCT+CGG | + | chr1_3:53611291-53611310 | Msa0125200:intron | 45.0% | |
| GATCCCCATTGTGAACAAGT+GGG | + | chr1_3:53611566-53611585 | Msa0125200:CDS | 45.0% | |
| CATCCCACTTGTTCACAATG+GGG | - | chr1_3:53611572-53611591 | None:intergenic | 45.0% | |
| GGGTTGAACACTGGGATTAT+AGG | - | chr1_3:53611723-53611742 | None:intergenic | 45.0% | |
| ATCCCAGTGTTCAACCCTAA+AGG | + | chr1_3:53611726-53611745 | Msa0125200:CDS | 45.0% | |
| GTCATCAAAAGAGCAACTCC+TGG | + | chr1_3:53611864-53611883 | Msa0125200:CDS | 45.0% | |
| AAGAGCAACTCCTGGTATAC+AGG | + | chr1_3:53611872-53611891 | Msa0125200:CDS | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr1_3:53612047-53612066 | Msa0125200:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr1_3:53612048-53612067 | Msa0125200:intron | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr1_3:53612047-53612066 | Msa0125200:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr1_3:53612048-53612067 | Msa0125200:intron | 45.0% | |
| AGCCTCTCGTGTGTAAAAAC+AGG | + | chr1_3:53612137-53612156 | Msa0125200:intron | 45.0% | |
| GCACCAGATTGCCCTTTAAT+TGG | + | chr1_3:53612228-53612247 | Msa0125200:intron | 45.0% | |
| GTACGGGTACCAACAAGAAA+TGG | + | chr1_3:53612355-53612374 | Msa0125200:CDS | 45.0% | |
| CAGAAACTTGGAACACGGTT+AGG | - | chr1_3:53612480-53612499 | None:intergenic | 45.0% | |
| CTAACCGTGTTCCAAGTTTC+TGG | + | chr1_3:53612478-53612497 | Msa0125200:CDS | 45.0% | |
| CCATCCAGAAACTTGGAACA+CGG | - | chr1_3:53612485-53612504 | None:intergenic | 45.0% | |
| ! | CGTGTTCCAAGTTTCTGGAT+GGG | + | chr1_3:53612483-53612502 | Msa0125200:CDS | 45.0% |
| !! | CAAGAAGCATCAAGAGACTG+TGG | + | chr1_3:53612527-53612546 | Msa0125200:CDS | 45.0% |
| !! | GACAAAGTGTTGGAGAAAGC+AGG | + | chr1_3:53612699-53612718 | Msa0125200:CDS | 45.0% |
| TCATGCCCAAATCCTATGTG+TGG | + | chr1_3:53612837-53612856 | Msa0125200:CDS | 45.0% | |
| CACGTCCACACATAGGATTT+GGG | - | chr1_3:53612845-53612864 | None:intergenic | 45.0% | |
| ACACGTCCACACATAGGATT+TGG | - | chr1_3:53612846-53612865 | None:intergenic | 45.0% | |
| ! | CACTTCCCCCTAAGTTGGAA+AGG | - | chr1_3:53609634-53609653 | None:intergenic | 50.0% |
| CCTTAATCGCGTCGCAACAA+CGG | + | chr1_3:53610346-53610365 | Msa0125200:CDS | 50.0% | |
| TGCTGGATCACCTGAATGTG+TGG | + | chr1_3:53610462-53610481 | Msa0125200:CDS | 50.0% | |
| GCTGGATCACCTGAATGTGT+GGG | + | chr1_3:53610463-53610482 | Msa0125200:CDS | 50.0% | |
| TGGGCAAAATGGTCTGCTGA+AGG | + | chr1_3:53610482-53610501 | Msa0125200:CDS | 50.0% | |
| GCTTCTACTGGCAACCTTGT+CGG | + | chr1_3:53610590-53610609 | Msa0125200:CDS | 50.0% | |
| TTGCAGTTGTGATGCTGTCG+TGG | + | chr1_3:53610700-53610719 | Msa0125200:intron | 50.0% | |
| ! | TGAGAAGTTGGTTGCGCAAC+TGG | + | chr1_3:53610944-53610963 | Msa0125200:CDS | 50.0% |
| ! | GAGAAGTTGGTTGCGCAACT+GGG | + | chr1_3:53610945-53610964 | Msa0125200:CDS | 50.0% |
| GACAATCAGTTCCATTGCGG+TGG | - | chr1_3:53611163-53611182 | None:intergenic | 50.0% | |
| CGAGGTCTAGCGCAAATGAT+TGG | - | chr1_3:53611293-53611312 | None:intergenic | 50.0% | |
| TAATGCATGTTGCACCACCG+AGG | - | chr1_3:53611311-53611330 | None:intergenic | 50.0% | |
| GGATCCCCATTGTGAACAAG+TGG | + | chr1_3:53611565-53611584 | Msa0125200:CDS | 50.0% | |
| GGAATGCTTCTATGCCCCAT+TGG | - | chr1_3:53611788-53611807 | None:intergenic | 50.0% | |
| !! | ACCTCAAGTTGAAGTGGAGC+TGG | + | chr1_3:53611832-53611851 | Msa0125200:CDS | 50.0% |
| ! | AGTTGAAGTGGAGCTGGCTT+TGG | + | chr1_3:53611838-53611857 | Msa0125200:CDS | 50.0% |
| !! | GTTGAAGTGGAGCTGGCTTT+GGG | + | chr1_3:53611839-53611858 | Msa0125200:CDS | 50.0% |
| ACTGAAAGGTCACGGGTTCA+TGG | + | chr1_3:53612055-53612074 | Msa0125200:intron | 50.0% | |
| GGATAAGGGGTCTCACCATT+TGG | - | chr1_3:53612182-53612201 | None:intergenic | 50.0% | |
| ! | CATACGCAGTGTCGGATAAG+GGG | - | chr1_3:53612195-53612214 | None:intergenic | 50.0% |
| ! | GCATACGCAGTGTCGGATAA+GGG | - | chr1_3:53612196-53612215 | None:intergenic | 50.0% |
| ! | AGCATACGCAGTGTCGGATA+AGG | - | chr1_3:53612197-53612216 | None:intergenic | 50.0% |
| TTATCCGACACTGCGTATGC+TGG | + | chr1_3:53612196-53612215 | Msa0125200:intron | 50.0% | |
| AACTCCAGCATACGCAGTGT+CGG | - | chr1_3:53612203-53612222 | None:intergenic | 50.0% | |
| ! | CCGTGTTCCAAGTTTCTGGA+TGG | + | chr1_3:53612482-53612501 | Msa0125200:CDS | 50.0% |
| ATCCTTGTGGATCACGTCTG+AGG | - | chr1_3:53612590-53612609 | None:intergenic | 50.0% | |
| TCAGACGTGATCCACAAGGA+TGG | + | chr1_3:53612589-53612608 | Msa0125200:CDS | 50.0% | |
| ACTTCTTGGTCATGGCGAAC+CGG | + | chr1_3:53612641-53612660 | Msa0125200:CDS | 50.0% | |
| ! | CGAACCGGCTCATCAAACTT+TGG | + | chr1_3:53612656-53612675 | Msa0125200:CDS | 50.0% |
| TCCTATGTGTGGACGTGTGA+TGG | + | chr1_3:53612848-53612867 | Msa0125200:CDS | 50.0% | |
| TCCATCACACGTCCACACAT+AGG | - | chr1_3:53612852-53612871 | None:intergenic | 50.0% | |
| TATGTGTGGACGTGTGATGG+AGG | + | chr1_3:53612851-53612870 | Msa0125200:CDS | 50.0% | |
| ! | GGTTGTTTGGCTCATCACGA+TGG | - | chr1_3:53612902-53612921 | None:intergenic | 50.0% |
| CGTGATGAGCCAAACAACCT+TGG | + | chr1_3:53612903-53612922 | Msa0125200:CDS | 50.0% | |
| AGTGGCACTTCCCCCTAAGT+TGG | - | chr1_3:53609639-53609658 | None:intergenic | 55.0% | |
| CCGTTGTTGCGACGCGATTA+AGG | - | chr1_3:53610349-53610368 | None:intergenic | 55.0% | |
| GTCGCAACAACGGACACACT+TGG | + | chr1_3:53610356-53610375 | Msa0125200:CDS | 55.0% | |
| ! | TGCAAGGCGTCTGTCAAAGC+AGG | - | chr1_3:53610527-53610546 | None:intergenic | 55.0% |
| ! | GTGATGCTGTCGTGGTCTTG+TGG | + | chr1_3:53610708-53610727 | Msa0125200:intron | 55.0% |
| TCATTTGCGCTAGACCTCGG+TGG | + | chr1_3:53611294-53611313 | Msa0125200:intron | 55.0% | |
| GCCAGCTCCACTTCAACTTG+AGG | - | chr1_3:53611836-53611855 | None:intergenic | 55.0% | |
| TCACGGGTTCATGGCGCAAT+TGG | + | chr1_3:53612064-53612083 | Msa0125200:intron | 55.0% | |
| TGCCTCAGACGTGATCCACA+AGG | + | chr1_3:53612585-53612604 | Msa0125200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53609540 | 53613210 | 53609540 | ID=Msa0125200;Name=Msa0125200 |
| chr1_3 | mRNA | 53609540 | 53613210 | 53609540 | ID=Msa0125200-mRNA-1;Parent=Msa0125200;Name=Msa0125200-mRNA-1;_AED=0.28;_eAED=0.28;_QI=86|1|1|1|1|1|7|278|674 |
| chr1_3 | exon | 53609540 | 53609841 | 53609540 | ID=Msa0125200-mRNA-1:exon:16413;Parent=Msa0125200-mRNA-1 |
| chr1_3 | exon | 53610048 | 53610116 | 53610048 | ID=Msa0125200-mRNA-1:exon:16414;Parent=Msa0125200-mRNA-1 |
| chr1_3 | exon | 53610206 | 53610618 | 53610206 | ID=Msa0125200-mRNA-1:exon:16415;Parent=Msa0125200-mRNA-1 |
| chr1_3 | exon | 53610899 | 53610987 | 53610899 | ID=Msa0125200-mRNA-1:exon:16416;Parent=Msa0125200-mRNA-1 |
| chr1_3 | exon | 53611081 | 53611217 | 53611081 | ID=Msa0125200-mRNA-1:exon:16417;Parent=Msa0125200-mRNA-1 |
| chr1_3 | exon | 53611405 | 53611893 | 53611405 | ID=Msa0125200-mRNA-1:exon:16418;Parent=Msa0125200-mRNA-1 |
| chr1_3 | exon | 53612321 | 53613210 | 53612321 | ID=Msa0125200-mRNA-1:exon:16419;Parent=Msa0125200-mRNA-1 |
| chr1_3 | five_prime_UTR | 53609540 | 53609625 | 53609540 | ID=Msa0125200-mRNA-1:five_prime_utr;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53609626 | 53609841 | 53609626 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53610048 | 53610116 | 53610048 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53610206 | 53610618 | 53610206 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53610899 | 53610987 | 53610899 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53611081 | 53611217 | 53611081 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53611405 | 53611893 | 53611405 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | CDS | 53612321 | 53612932 | 53612321 | ID=Msa0125200-mRNA-1:cds;Parent=Msa0125200-mRNA-1 |
| chr1_3 | three_prime_UTR | 53612933 | 53613210 | 53612933 | ID=Msa0125200-mRNA-1:three_prime_utr;Parent=Msa0125200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
