AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065590 MtrunA17_Chr1g0169291 98.000 250 5 0 203 452 1 250 1.35e-172 484
Msa0065590 MtrunA17_Chr1g0169291 76.419 229 26 3 4 206 23 249 9.87e-107 316
Msa0065590 MtrunA17_Chr1g0169511 98.000 250 5 0 203 452 1 250 6.94e-172 482
Msa0065590 MtrunA17_Chr1g0169511 76.419 229 26 3 4 206 23 249 2.45e-112 330
Msa0065590 MtrunA17_Chr1g0169281 84.739 249 36 1 206 452 8 256 7.99e-142 406
Msa0065590 MtrunA17_Chr1g0169281 84.483 232 10 2 1 206 24 255 2.24e-120 351
Msa0065590 MtrunA17_Chr1g0212861 40.426 235 121 5 237 452 119 353 1.36e-39 145
Msa0065590 MtrunA17_Chr1g0212861 34.322 236 106 6 16 205 119 351 1.06e-24 104
Msa0065590 MtrunA17_Chr4g0030681 44.053 227 114 5 237 452 80 304 2.09e-39 144
Msa0065590 MtrunA17_Chr4g0030681 36.283 226 99 5 16 202 80 299 7.43e-25 103
Msa0065590 MtrunA17_Chr4g0030731 42.478 226 120 4 237 452 78 303 2.31e-39 144
Msa0065590 MtrunA17_Chr4g0030731 36.283 226 100 5 16 202 78 298 8.79e-25 103
Msa0065590 MtrunA17_Chr7g0221601 39.754 244 114 8 231 450 153 387 3.39e-39 145
Msa0065590 MtrunA17_Chr7g0221601 33.594 256 104 8 2 205 146 387 5.67e-25 105
Msa0065590 MtrunA17_Chr4g0030671 32.979 282 170 8 184 450 3 280 2.63e-35 132
Msa0065590 MtrunA17_Chr4g0030671 33.333 225 110 7 18 205 59 280 1.61e-21 94.4
Msa0065590 MtrunA17_Chr1g0212871 32.367 207 110 5 241 442 51 232 5.83e-21 91.7
Msa0065590 MtrunA17_Chr1g0175911 40.000 90 53 1 337 425 81 170 9.73e-14 69.7
Msa0065590 MtrunA17_Chr4g0024951 35.345 116 66 3 338 450 66 175 2.33e-13 68.2
Msa0065590 MtrunA17_Chr7g0259071 42.553 94 52 2 336 427 76 169 3.34e-13 68.2
Msa0065590 MtrunA17_Chr4g0068381 35.955 89 56 1 336 423 66 154 6.84e-13 67.0
Msa0065590 MtrunA17_Chr4g0005111 41.111 90 52 1 338 426 78 167 9.84e-13 66.6
Msa0065590 MtrunA17_Chr7g0259091 40.000 95 55 2 335 427 78 172 1.18e-12 66.6
Msa0065590 MtrunA17_Chr3g0085321 37.963 108 64 2 320 424 57 164 1.23e-12 66.6
Msa0065590 MtrunA17_Chr4g0068391 38.000 100 59 3 330 427 60 158 1.57e-12 65.9
Msa0065590 MtrunA17_Chr4g0005011 31.624 117 73 2 337 452 86 196 3.13e-12 65.5
Msa0065590 MtrunA17_Chr4g0024961 40.909 88 51 1 338 424 66 153 4.10e-12 64.7
Msa0065590 MtrunA17_Chr3g0085301 34.579 107 67 2 321 424 63 169 6.12e-12 64.7
Msa0065590 MtrunA17_Chr7g0259101 40.000 95 55 2 335 427 78 172 1.18e-11 66.2
Msa0065590 MtrunA17_Chr7g0259101 40.000 95 55 2 335 427 277 371 1.31e-11 66.2
Msa0065590 MtrunA17_Chr3g0085311 39.362 94 56 1 337 429 76 169 1.26e-11 63.5
Msa0065590 MtrunA17_Chr4g0005131 39.362 94 56 1 337 429 78 171 2.56e-11 62.8
Msa0065590 MtrunA17_Chr7g0259121 39.175 97 53 2 336 427 76 171 4.44e-11 62.4
Msa0065590 MtrunA17_Chr3g0090231 32.110 109 73 1 317 424 52 160 8.41e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065590 AT4G13580.1 67.480 246 78 1 207 452 1 244 1.99e-111 328
Msa0065590 AT4G13580.1 58.621 232 63 4 1 206 19 243 3.65e-77 241
Msa0065590 AT3G24020.1 66.802 247 76 3 207 452 2 243 2.17e-110 326
Msa0065590 AT3G24020.1 57.759 232 65 4 1 206 18 242 2.22e-77 241
Msa0065590 AT1G07730.2 43.913 230 105 6 243 452 164 389 1.56e-43 157
Msa0065590 AT1G07730.2 39.381 226 95 7 22 206 164 388 2.32e-23 101
Msa0065590 AT2G28670.2 44.348 230 102 6 245 452 1 226 6.61e-42 148
Msa0065590 AT2G28670.2 39.111 225 93 7 24 205 1 224 2.06e-23 98.6
Msa0065590 AT2G28670.1 44.397 232 103 6 243 452 209 436 4.35e-41 152
Msa0065590 AT2G28670.1 39.207 227 94 7 22 205 209 434 4.90e-23 101
Msa0065590 AT2G39430.1 38.843 242 124 6 234 452 80 320 4.72e-38 141
Msa0065590 AT2G39430.1 34.979 243 112 6 13 209 80 322 7.73e-28 113
Msa0065590 AT3G55230.1 37.860 243 127 6 233 452 62 303 1.74e-37 139
Msa0065590 AT3G55230.1 36.667 240 106 7 12 205 62 301 1.93e-31 122
Msa0065590 AT1G65870.1 36.364 110 67 2 324 430 62 171 4.95e-14 70.9
Msa0065590 AT5G42510.1 41.304 92 53 1 334 424 69 160 2.35e-13 68.9
Msa0065590 AT3G13650.1 37.634 93 57 1 338 429 74 166 7.59e-13 67.4
Msa0065590 AT5G42500.1 38.710 93 56 1 336 427 74 166 1.69e-12 66.2
Msa0065590 AT3G58090.1 37.500 88 54 1 341 427 163 250 6.38e-12 66.2
Msa0065590 AT1G22900.1 39.773 88 52 1 338 424 84 171 6.24e-11 62.0

Find 154 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCCCTGTGGCTGCAAT+AGG 0.227062 1_2:-28095121 None:intergenic
TTGTTTGAAGGAGGGGAATA+TGG 0.272005 1_2:+28095577 Msa0065590:CDS
ACTAACATCTCAACCTGAAT+TGG 0.273439 1_2:+28095471 Msa0065590:CDS
TCCTTTCCTGTGGCTGCAAT+TGG 0.276263 1_2:-28092580 None:intergenic
CCTACTGTTAATGGTGTTAC+TGG 0.279068 1_2:+28092775 Msa0065590:CDS
CCCACTGTCAATGGCGTTAC+CGG 0.292317 1_2:+28095316 Msa0065590:CDS
ACCATTTGAGAACCCAATTC+AGG 0.294933 1_2:-28095484 None:intergenic
GGATTAACACCATTTGCATT+AGG 0.297019 1_2:-28092754 None:intergenic
ATGTCGCGATTATCAGTAAT+AGG 0.309916 1_2:+28095643 Msa0065590:CDS
AAGTACTATGTCGCGATTAT+CGG 0.316886 1_2:+28093101 Msa0065590:CDS
GGACCTGATGGACTTGGATT+AGG 0.319881 1_2:+28092883 Msa0065590:CDS
GGAATGGCACCATTTGCATT+AGG 0.340305 1_2:-28095295 None:intergenic
GATGGACTTGGATTAGGATT+TGG 0.351208 1_2:+28092889 Msa0065590:CDS
GATTAACACCATTTGCATTA+GGG 0.356622 1_2:-28092753 None:intergenic
GGTGTTAATCCTACTGTTAA+TGG 0.373730 1_2:+28092766 Msa0065590:CDS
GAATGGCACCATTTGCATTA+GGG 0.374121 1_2:-28095294 None:intergenic
CCAACGGCTCGACCGGTAAC+TGG 0.374627 1_2:+28095190 Msa0065590:CDS
TTAACATCTCAACCAGAGTT+AGG 0.377354 1_2:+28092937 Msa0065590:CDS
TCGACCGGTAACTGGTTTGT+TGG 0.377440 1_2:+28095198 Msa0065590:CDS
GATGGACTTGGACTAGGATT+TGG 0.379130 1_2:+28095424 Msa0065590:CDS
ATTACTAGCTATATCTCCTT+TGG 0.380043 1_2:+28095048 Msa0065590:CDS
GTGCCCTTTGCTACACCAAT+AGG 0.386638 1_2:+28095241 Msa0065590:CDS
CTTTCCCTGTGGCTGCAATA+GGG 0.392550 1_2:-28095120 None:intergenic
CCAGCCAAGCCAGTTCCTAA+TGG 0.392918 1_2:-28095343 None:intergenic
TGTCGCGATTATCAGTAATA+GGG 0.400451 1_2:+28095644 Msa0065590:CDS
TGATTGTTATTGTTATTGTT+TGG 0.402312 1_2:-28092838 None:intergenic
CTGTTCATGCATGACATTCT+TGG 0.409600 1_2:+28095157 Msa0065590:CDS
ACCTGAATTGGGTTCTCAAA+TGG 0.412760 1_2:+28095483 Msa0065590:CDS
CTTGGAATGTTGAATCCAAC+TGG 0.413683 1_2:-28092715 None:intergenic
ACAAATTGTTGGAAAGGGTC+AGG 0.415848 1_2:+28092963 Msa0065590:CDS
ACCTGTCCAGGTGGAATAAG+AGG 0.418722 1_2:-28093177 None:intergenic
TATATCTCCTTTGGCAATGT+TGG 0.426857 1_2:+28095057 Msa0065590:CDS
TTGTTCATGCATGACATTCT+TGG 0.430091 1_2:+28092616 Msa0065590:CDS
CCTTTAGGAACTGGTTTAGC+TGG 0.430422 1_2:+28092802 Msa0065590:intron
CGACCGGTAACTGGTTTGTT+GGG 0.438212 1_2:+28095199 Msa0065590:CDS
GCACCATTTGCATTAGGGAT+TGG 0.438940 1_2:-28095289 None:intergenic
TTGCCCAACAAACCAGTTAC+CGG 0.439077 1_2:-28095202 None:intergenic
TTATCGGTTGTAGGAGGGAC+GGG 0.439221 1_2:+28093117 Msa0065590:CDS
CACAGCCTTGTTTGAAGGAG+GGG 0.440382 1_2:+28095570 Msa0065590:CDS
CCATTAGGAACTGGCTTGGC+TGG 0.442150 1_2:+28095343 Msa0065590:CDS
CAGCCAAGCCAGTTCCTAAT+GGG 0.442709 1_2:-28095342 None:intergenic
CCGGTCACTGGTCGAGCCGT+TGG 0.445896 1_2:-28092649 None:intergenic
TGTGGAGTGTTAAATCCTAT+TGG 0.447348 1_2:-28095256 None:intergenic
ACACCATTTGCATTAGGGAT+TGG 0.448404 1_2:-28092748 None:intergenic
ACCGGTATCCCATTAGGAAC+TGG 0.448563 1_2:+28095334 Msa0065590:CDS
ACCTCTTATTCCACCTGGAC+AGG 0.449379 1_2:+28093176 Msa0065590:CDS
AATTGGGTTCTCAAATGGTT+GGG 0.455097 1_2:+28095488 Msa0065590:CDS
CTAACATCTCAACCTGAATT+GGG 0.457016 1_2:+28095472 Msa0065590:CDS
GGAAGTTTAAGTATGCTAAA+GGG 0.460142 1_2:+28093139 Msa0065590:CDS
GGCGTTACCGGTATCCCATT+AGG 0.460896 1_2:+28095328 Msa0065590:CDS
ATTTGTCCTGGTGGGATAAG+AGG 0.461816 1_2:-28095712 None:intergenic
GGGAAGTTTAAGTATGCTAA+AGG 0.463071 1_2:+28093138 Msa0065590:CDS
CACAGTACTAGTATTTCAAA+TGG 0.467016 1_2:-28095774 None:intergenic
AACAATGTTCAGTTAACGTT+AGG 0.471550 1_2:+28092862 Msa0065590:CDS
GTATTCACAGCCTTGTTTGA+AGG 0.475516 1_2:+28095565 Msa0065590:CDS
GGTTCACAAATTGTTGGAAA+GGG 0.477487 1_2:+28092958 Msa0065590:CDS
TGCATGAACAACTCAATGAT+TGG 0.478315 1_2:-28092604 None:intergenic
CAGTTACCGGTCGAGCCGTT+GGG 0.479271 1_2:-28095189 None:intergenic
GAATTGGGTTCTCAAATGGT+TGG 0.482363 1_2:+28095487 Msa0065590:CDS
GGTGCCATTCCCACTGTCAA+TGG 0.483229 1_2:+28095307 Msa0065590:CDS
CCAGTTACCGGTCGAGCCGT+TGG 0.485169 1_2:-28095190 None:intergenic
AACAATGCTCAGGTGCAGTT+AGG 0.485687 1_2:+28095397 Msa0065590:CDS
ATGCCAATCCCTAATGCAAA+TGG 0.485841 1_2:+28092745 Msa0065590:CDS
CGGTCACTGGTCGAGCCGTT+GGG 0.485879 1_2:-28092648 None:intergenic
CAAATTGTTGGAAAGGGTCA+GGG 0.488459 1_2:+28092964 Msa0065590:CDS
TGCATGAACAGCTCAATGAT+TGG 0.499700 1_2:-28095145 None:intergenic
AATCCTAATCCAAGTCCATC+AGG 0.506312 1_2:-28092886 None:intergenic
AATCCTAGTCCAAGTCCATC+AGG 0.508608 1_2:-28095421 None:intergenic
ATTCCAATCCCTAATGCAAA+TGG 0.509041 1_2:+28095286 Msa0065590:CDS
GAGTTAGGTTCACAAATTGT+TGG 0.509703 1_2:+28092952 Msa0065590:CDS
CGACCAGTGACCGGTTTGCT+CGG 0.510231 1_2:+28092658 Msa0065590:CDS
GGACCTGATGGACTTGGACT+AGG 0.513199 1_2:+28095418 Msa0065590:CDS
CCTGGACAGGTTGCTACTGA+TGG 0.513998 1_2:+28093189 Msa0065590:CDS
ATGTAGCAAGTTCGGCTGAC+GGG 0.514478 1_2:+28092992 Msa0065590:CDS
CCATCGGTGGCAATTTGTCC+TGG 0.516349 1_2:-28095724 None:intergenic
AGGTTCACAAATTGTTGGAA+AGG 0.517920 1_2:+28092957 Msa0065590:CDS
AATCCTATTGGTGTAGCAAA+GGG 0.519077 1_2:-28095244 None:intergenic
ACGTTAGGACCTGATGGACT+TGG 0.520993 1_2:+28092877 Msa0065590:CDS
AAGTAACCCAACGGCTCGAC+CGG 0.524249 1_2:+28095183 Msa0065590:CDS
GCCAGTTCCTAATGGGATAC+CGG 0.525881 1_2:-28095335 None:intergenic
ATTGTTGCTGTTTGGTGCAA+AGG 0.526412 1_2:-28095371 None:intergenic
CCATCAGTAGCAACCTGTCC+AGG 0.527354 1_2:-28093189 None:intergenic
TCGCGATTATCGGTTGTAGG+AGG 0.528452 1_2:+28093111 Msa0065590:CDS
GAATCCAACTGGGGTTGCAA+AGG 0.532298 1_2:-28092704 None:intergenic
AGATGGCAGCAGACAGATGA+TGG 0.537603 1_2:+28095543 Msa0065590:CDS
CAGTTAGGACCTGATGGACT+TGG 0.539311 1_2:+28095412 Msa0065590:CDS
ACAATTTGTGAACCTAACTC+TGG 0.539499 1_2:-28092949 None:intergenic
ATGTCGCGATTATCGGTTGT+AGG 0.540679 1_2:+28093108 Msa0065590:CDS
GTATATGTTGCCGAGCAAAC+CGG 0.541501 1_2:-28092668 None:intergenic
TTCATGCATGACATTCTTGG+TGG 0.543393 1_2:+28092619 Msa0065590:CDS
CTGAGACCTCTTATTCCACC+TGG 0.543896 1_2:+28093171 Msa0065590:CDS
CAGGTGCAGTTAGGACCTGA+TGG 0.543932 1_2:+28095406 Msa0065590:CDS
AATCCAACTGGGGTTGCAAA+GGG 0.544346 1_2:-28092703 None:intergenic
AATGATTGGTTCCTTTCCTG+TGG 0.544898 1_2:-28092590 None:intergenic
GGGATTGGCATACTATCACT+TGG 0.545050 1_2:-28092733 None:intergenic
TTGCCGAGCAAACCGGTCAC+TGG 0.546279 1_2:-28092661 None:intergenic
GGAAAGTTCAAGAATGCAAG+GGG 0.548640 1_2:+28095673 Msa0065590:CDS
CGCGATTATCGGTTGTAGGA+GGG 0.549189 1_2:+28093112 Msa0065590:CDS
GTACCCTTTGCAACCCCAGT+TGG 0.549320 1_2:+28092700 Msa0065590:CDS
TTGGTGTAGCAAAGGGCACT+TGG 0.549569 1_2:-28095237 None:intergenic
TTCATGCATGACATTCTTGG+TGG 0.552092 1_2:+28095160 Msa0065590:CDS
TTCACAGCCTTGTTTGAAGG+AGG 0.552103 1_2:+28095568 Msa0065590:CDS
GTTGACCCTATTGCAGCCAC+AGG 0.552753 1_2:+28095115 Msa0065590:CDS
AACGCCATTGACAGTGGGAA+TGG 0.553395 1_2:-28095311 None:intergenic
GAAAGCTCAAGGTGTTTATG+TGG 0.553581 1_2:+28095510 Msa0065590:CDS
AAATCCTATTGGTGTAGCAA+AGG 0.554896 1_2:-28095245 None:intergenic
CAACAATCAAAACAATGCTC+AGG 0.557905 1_2:+28095387 Msa0065590:CDS
CAGCAATGTCTCCGCACCAT+CGG 0.561377 1_2:-28095740 None:intergenic
TCCAATTGCAGCCACAGGAA+AGG 0.562874 1_2:+28092579 Msa0065590:CDS
TGACGGGAGTAGACAGATGA+TGG 0.563922 1_2:+28093008 Msa0065590:CDS
CAGGAAAGTTCAAGAATGCA+AGG 0.567749 1_2:+28095671 Msa0065590:CDS
ATTGATCCAATTGCAGCCAC+AGG 0.569919 1_2:+28092574 Msa0065590:CDS
CGGTGGCAATTTGTCCTGGT+GGG 0.571743 1_2:-28095720 None:intergenic
TCGGTGGCAATTTGTCCTGG+TGG 0.573742 1_2:-28095721 None:intergenic
TCACAGCCTTGTTTGAAGGA+GGG 0.575570 1_2:+28095569 Msa0065590:CDS
CAAATGGTTGGGAAAGCTCA+AGG 0.578447 1_2:+28095499 Msa0065590:CDS
CCAGTAACACCATTAACAGT+AGG 0.579036 1_2:-28092775 None:intergenic
CAGTTAACGTTAGGACCTGA+TGG 0.580607 1_2:+28092871 Msa0065590:CDS
AAATTGTTGGAAAGGGTCAG+GGG 0.581072 1_2:+28092965 Msa0065590:CDS
TATCCCATTAGGAACTGGCT+TGG 0.584448 1_2:+28095339 Msa0065590:CDS
GTCGCGATTATCAGTAATAG+GGG 0.586398 1_2:+28095645 Msa0065590:CDS
GATTTAACACTCCACAAGGT+GGG 0.587292 1_2:+28095263 Msa0065590:CDS
AATGATTGGTTCTTTCCCTG+TGG 0.589744 1_2:-28095131 None:intergenic
TATGTAGCAAGTTCGGCTGA+CGG 0.590795 1_2:+28092991 Msa0065590:CDS
CTGAGACCTCTTATCCCACC+AGG 0.596655 1_2:+28095706 Msa0065590:CDS
TATCGGTTGTAGGAGGGACG+GGG 0.603964 1_2:+28093118 Msa0065590:CDS
CCAACGGCTCGACCAGTGAC+CGG 0.606503 1_2:+28092649 Msa0065590:CDS
ATATTCCCCTCCTTCAAACA+AGG 0.608813 1_2:-28095575 None:intergenic
CCGGTAACGCCATTGACAGT+GGG 0.609739 1_2:-28095316 None:intergenic
CAATGTCTCCGCACCATCGG+TGG 0.611187 1_2:-28095737 None:intergenic
TATGTGGCAAGTTCAGCAGA+TGG 0.613929 1_2:+28095526 Msa0065590:CDS
CCAGGACAAATTGCCACCGA+TGG 0.614361 1_2:+28095724 Msa0065590:CDS
ACCGGTAACGCCATTGACAG+TGG 0.618135 1_2:-28095317 None:intergenic
TTGGAATGTTGAATCCAACT+GGG 0.618283 1_2:-28092714 None:intergenic
ACAAATTGCCACCGATGGTG+CGG 0.619112 1_2:+28095729 Msa0065590:CDS
ATTATCGGTTGTAGGAGGGA+CGG 0.632538 1_2:+28093116 Msa0065590:CDS
AAAGCAACCAACATTGCCAA+AGG 0.640776 1_2:-28095064 None:intergenic
AGGAAAGTTCAAGAATGCAA+GGG 0.644422 1_2:+28095672 Msa0065590:CDS
GGGATTGGAATCCCACCTTG+TGG 0.644979 1_2:-28095274 None:intergenic
TCTTGGTGGCAGTAACCCAA+CGG 0.656099 1_2:+28092633 Msa0065590:CDS
TCAGTAGCAACCTGTCCAGG+TGG 0.657359 1_2:-28093186 None:intergenic
AATTGTTGGAAAGGGTCAGG+GGG 0.661911 1_2:+28092966 Msa0065590:CDS
GGATTTAACACTCCACAAGG+TGG 0.665641 1_2:+28095262 Msa0065590:CDS
TTGACCCTATTGCAGCCACA+GGG 0.674527 1_2:+28095116 Msa0065590:CDS
TTGTTGGGCAACATATACAG+TGG 0.686502 1_2:+28095214 Msa0065590:CDS
ATGGTGCTGAGACTTTGTTG+AGG 0.693982 1_2:+28093208 Msa0065590:CDS
TATTACTGATAATCGCGACA+TGG 0.699334 1_2:-28095641 None:intergenic
ATAGGATTTAACACTCCACA+AGG 0.710387 1_2:+28095259 Msa0065590:CDS
TCTTGGTGGAAGTAACCCAA+CGG 0.712556 1_2:+28095174 Msa0065590:CDS
TCGCGATTATCAGTAATAGG+GGG 0.718514 1_2:+28095646 Msa0065590:CDS
TTGCTCGGCAACATATACAG+TGG 0.727097 1_2:+28092673 Msa0065590:CDS
TGGAATGTTGAATCCAACTG+GGG 0.746650 1_2:-28092713 None:intergenic
ATGGTGCGGAGACATTGCTG+AGG 0.778387 1_2:+28095743 Msa0065590:CDS
GAAAGTTCAAGAATGCAAGG+GGG 0.779865 1_2:+28095674 Msa0065590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGCAATAAATATTTAAT+TGG - chr1_2:28093642-28093661 None:intergenic 10.0%
!! TTCTATTAATAGTTTAAATT+TGG + chr1_2:28094091-28094110 Msa0065590:intron 10.0%
!! TCTATTAATAGTTTAAATTT+GGG + chr1_2:28094092-28094111 Msa0065590:intron 10.0%
!! TTAAAATTACAAAAAATAAC+TGG + chr1_2:28094129-28094148 Msa0065590:intron 10.0%
!! AAAATTAACAACTAAATACA+AGG - chr1_2:28093404-28093423 None:intergenic 15.0%
!! AAATGGATAAATGAATAAAA+TGG + chr1_2:28093519-28093538 Msa0065590:intron 15.0%
!!! AAGATAAAATACTTTTTCTT+TGG + chr1_2:28093793-28093812 Msa0065590:intron 15.0%
!!! AGATAAAATACTTTTTCTTT+GGG + chr1_2:28093794-28093813 Msa0065590:intron 15.0%
!!! ATTTTTCTATTCCTTTTAAA+TGG - chr1_2:28094340-28094359 None:intergenic 15.0%
!! AAATAAGTAAGAAAACATAA+AGG + chr1_2:28094356-28094375 Msa0065590:intron 15.0%
!!! TGATTGTTATTGTTATTGTT+TGG - chr1_2:28092841-28092860 None:intergenic 20.0%
!!! TTTTATGGTTTGTATAAGAT+TGG + chr1_2:28093078-28093097 Msa0065590:intron 20.0%
!! GATGATTATTATTATCAGTT+TGG + chr1_2:28093317-28093336 Msa0065590:intron 20.0%
!!! TAGTTGTTAATTTTGCAATA+TGG + chr1_2:28093410-28093429 Msa0065590:intron 20.0%
!!! AGTTGTTAATTTTGCAATAT+GGG + chr1_2:28093411-28093430 Msa0065590:intron 20.0%
!! ACAAAATTATTCTTCAATAC+AGG + chr1_2:28093733-28093752 Msa0065590:intron 20.0%
!! TTAAAATTTCGTGACATATT+TGG + chr1_2:28094162-28094181 Msa0065590:intron 20.0%
!! TAGAATTTGATCCATTTAAA+AGG + chr1_2:28094326-28094345 Msa0065590:intron 20.0%
!!! AAGTAATTTTACAGAGAATT+TGG + chr1_2:28094406-28094425 Msa0065590:intron 20.0%
!!! TGGTTGAGTTTTTTTTTTTT+AGG + chr1_2:28094426-28094445 Msa0065590:intron 20.0%
!!! GGTTGAGTTTTTTTTTTTTA+GGG + chr1_2:28094427-28094446 Msa0065590:intron 20.0%
!! GATAAACAATTAATGATGTT+TGG + chr1_2:28094503-28094522 Msa0065590:intron 20.0%
!! ATTACGAAATCATTTAGAAA+AGG + chr1_2:28094618-28094637 Msa0065590:intron 20.0%
!! TTACGAAATCATTTAGAAAA+GGG + chr1_2:28094619-28094638 Msa0065590:intron 20.0%
!! GAATATTATATAACTCAATG+AGG - chr1_2:28094704-28094723 None:intergenic 20.0%
!!! AGAAATATTGACTACAATTT+TGG + chr1_2:28094826-28094845 Msa0065590:intron 20.0%
!!! TTTTATGGTTTGTATAAGAT+AGG + chr1_2:28093078-28093097 Msa0065590:intron 20.0%
!! GGTGATAGTTTGAATTTTTA+TGG + chr1_2:28093063-28093082 Msa0065590:intron 25.0%
!!! TTAGTTTGTTTGCATGTATT+TGG + chr1_2:28093352-28093371 Msa0065590:intron 25.0%
!! TGATGTATAAAGCACTAATA+CGG + chr1_2:28093484-28093503 Msa0065590:intron 25.0%
!! ATGTTTTCAATTTCTTGAAC+TGG - chr1_2:28093765-28093784 None:intergenic 25.0%
!!! AAGTATGCACTTTTTAACTT+AGG - chr1_2:28093995-28094014 None:intergenic 25.0%
!!! TTTTTTTAGGGAAGAGAATT+TGG + chr1_2:28094439-28094458 Msa0065590:intron 25.0%
! AATTGTTTATCGTTGTCTTT+AGG - chr1_2:28094494-28094513 None:intergenic 25.0%
! TACGAAATCATTTAGAAAAG+GGG + chr1_2:28094620-28094639 Msa0065590:intron 25.0%
!! TAGTCAATATTTCTGATTAG+TGG - chr1_2:28094820-28094839 None:intergenic 25.0%
! AGTCATGGTATTATATAAGA+GGG - chr1_2:28094934-28094953 None:intergenic 25.0%
! AAGTCATGGTATTATATAAG+AGG - chr1_2:28094935-28094954 None:intergenic 25.0%
!! TGTGGTAATGAATATTTGTT+TGG - chr1_2:28094976-28094995 None:intergenic 25.0%
! TAGATACTAGTATTTCTTTG+TGG - chr1_2:28094994-28095013 None:intergenic 25.0%
! GTATCTATATCTGAAAAACT+TGG + chr1_2:28095007-28095026 Msa0065590:intron 25.0%
GATTAACACCATTTGCATTA+GGG - chr1_2:28092756-28092775 None:intergenic 30.0%
AACAATGTTCAGTTAACGTT+AGG + chr1_2:28092862-28092881 Msa0065590:CDS 30.0%
!! GTTTTTACAGCACTTTTTGA+AGG + chr1_2:28093030-28093049 Msa0065590:intron 30.0%
GGAAGTTTAAGTATGCTAAA+GGG + chr1_2:28093139-28093158 Msa0065590:CDS 30.0%
! AATTTTGCAATATGGGAACT+TGG + chr1_2:28093418-28093437 Msa0065590:intron 30.0%
!! TGATGATTTGTTATGTAGCA+CGG - chr1_2:28093610-28093629 None:intergenic 30.0%
TCGTTAAACTACATCACTTT+AGG + chr1_2:28093871-28093890 Msa0065590:intron 30.0%
ACTTAGGTGAAAATGACATT+GGG - chr1_2:28093979-28093998 None:intergenic 30.0%
AACTTAGGTGAAAATGACAT+TGG - chr1_2:28093980-28093999 None:intergenic 30.0%
!! AATAGTTTGTTTGATCTTCC+TGG + chr1_2:28094048-28094067 Msa0065590:intron 30.0%
!! AGTTTAAATTTGGGTTTTCG+TGG + chr1_2:28094101-28094120 Msa0065590:intron 30.0%
ATTGATGCATATAGTAGAGT+GGG + chr1_2:28094226-28094245 Msa0065590:intron 30.0%
GAGTTATGACTACAGATAAA+TGG + chr1_2:28094464-28094483 Msa0065590:intron 30.0%
!!! TAGCTATTGACTTGAGATTT+TGG + chr1_2:28094554-28094573 Msa0065590:intron 30.0%
CTGAAGTTGTTGAAATTAAC+AGG - chr1_2:28094870-28094889 None:intergenic 30.0%
TGAATATTTGTTTGGATGAG+TGG - chr1_2:28094968-28094987 None:intergenic 30.0%
TGAAAAACTTGGAAACAAGA+TGG + chr1_2:28095018-28095037 Msa0065590:intron 30.0%
ATTACTAGCTATATCTCCTT+TGG + chr1_2:28095048-28095067 Msa0065590:CDS 30.0%
!!! TTGTTTTGATTGTTGCTGTT+TGG - chr1_2:28095382-28095401 None:intergenic 30.0%
TGCATGAACAACTCAATGAT+TGG - chr1_2:28092607-28092626 None:intergenic 35.0%
TTGTTCATGCATGACATTCT+TGG + chr1_2:28092616-28092635 Msa0065590:CDS 35.0%
TTGGAATGTTGAATCCAACT+GGG - chr1_2:28092717-28092736 None:intergenic 35.0%
GGATTAACACCATTTGCATT+AGG - chr1_2:28092757-28092776 None:intergenic 35.0%
GGTGTTAATCCTACTGTTAA+TGG + chr1_2:28092766-28092785 Msa0065590:CDS 35.0%
TTAACATCTCAACCAGAGTT+AGG + chr1_2:28092937-28092956 Msa0065590:CDS 35.0%
ACAATTTGTGAACCTAACTC+TGG - chr1_2:28092952-28092971 None:intergenic 35.0%
GAGTTAGGTTCACAAATTGT+TGG + chr1_2:28092952-28092971 Msa0065590:CDS 35.0%
AGGTTCACAAATTGTTGGAA+AGG + chr1_2:28092957-28092976 Msa0065590:CDS 35.0%
GGTTCACAAATTGTTGGAAA+GGG + chr1_2:28092958-28092977 Msa0065590:CDS 35.0%
!! TTTACAGCACTTTTTGAAGG+AGG + chr1_2:28093033-28093052 Msa0065590:intron 35.0%
!! TTACAGCACTTTTTGAAGGA+GGG + chr1_2:28093034-28093053 Msa0065590:intron 35.0%
AAGTACTATGTCGCGATTAT+CGG + chr1_2:28093101-28093120 Msa0065590:CDS 35.0%
GGGAAGTTTAAGTATGCTAA+AGG + chr1_2:28093138-28093157 Msa0065590:CDS 35.0%
!! GAAGTACTGATGAGTATTGT+TGG + chr1_2:28093245-28093264 Msa0065590:intron 35.0%
GTATTGTTGGTGTATTGTGA+AGG + chr1_2:28093258-28093277 Msa0065590:intron 35.0%
! TACGGACTTCACTTTGAAAA+TGG + chr1_2:28093502-28093521 Msa0065590:intron 35.0%
! CTTTTTCTTTGGGTGAAAGA+TGG + chr1_2:28093804-28093823 Msa0065590:intron 35.0%
! ATGCTACTTGCATTGAATAG+TGG - chr1_2:28093841-28093860 None:intergenic 35.0%
CTTAGGTGAAAATGACATTG+GGG - chr1_2:28093978-28093997 None:intergenic 35.0%
CATTGATGCATATAGTAGAG+TGG + chr1_2:28094225-28094244 Msa0065590:intron 35.0%
TTGATGCATATAGTAGAGTG+GGG + chr1_2:28094227-28094246 Msa0065590:intron 35.0%
AATCTCAAGTCAATAGCTAG+TGG - chr1_2:28094553-28094572 None:intergenic 35.0%
TATATCTCCTTTGGCAATGT+TGG + chr1_2:28095057-28095076 Msa0065590:CDS 35.0%
AATCCTATTGGTGTAGCAAA+GGG - chr1_2:28095247-28095266 None:intergenic 35.0%
AAATCCTATTGGTGTAGCAA+AGG - chr1_2:28095248-28095267 None:intergenic 35.0%
! TGTGGAGTGTTAAATCCTAT+TGG - chr1_2:28095259-28095278 None:intergenic 35.0%
ATAGGATTTAACACTCCACA+AGG + chr1_2:28095259-28095278 Msa0065590:CDS 35.0%
ATTCCAATCCCTAATGCAAA+TGG + chr1_2:28095286-28095305 Msa0065590:CDS 35.0%
CAACAATCAAAACAATGCTC+AGG + chr1_2:28095387-28095406 Msa0065590:CDS 35.0%
ACTAACATCTCAACCTGAAT+TGG + chr1_2:28095471-28095490 Msa0065590:CDS 35.0%
CTAACATCTCAACCTGAATT+GGG + chr1_2:28095472-28095491 Msa0065590:CDS 35.0%
AATTGGGTTCTCAAATGGTT+GGG + chr1_2:28095488-28095507 Msa0065590:CDS 35.0%
! GGAGATAGCTTGAACTTTTA+TGG + chr1_2:28095598-28095617 Msa0065590:CDS 35.0%
TATTACTGATAATCGCGACA+TGG - chr1_2:28095644-28095663 None:intergenic 35.0%
ATGTCGCGATTATCAGTAAT+AGG + chr1_2:28095643-28095662 Msa0065590:CDS 35.0%
TGTCGCGATTATCAGTAATA+GGG + chr1_2:28095644-28095663 Msa0065590:CDS 35.0%
AGGAAAGTTCAAGAATGCAA+GGG + chr1_2:28095672-28095691 Msa0065590:CDS 35.0%
! AATGATTGGTTCCTTTCCTG+TGG - chr1_2:28092593-28092612 None:intergenic 40.0%
TTCATGCATGACATTCTTGG+TGG + chr1_2:28092619-28092638 Msa0065590:CDS 40.0%
TGGAATGTTGAATCCAACTG+GGG - chr1_2:28092716-28092735 None:intergenic 40.0%
CTTGGAATGTTGAATCCAAC+TGG - chr1_2:28092718-28092737 None:intergenic 40.0%
ATGCCAATCCCTAATGCAAA+TGG + chr1_2:28092745-28092764 Msa0065590:CDS 40.0%
ACACCATTTGCATTAGGGAT+TGG - chr1_2:28092751-28092770 None:intergenic 40.0%
CCAGTAACACCATTAACAGT+AGG - chr1_2:28092778-28092797 None:intergenic 40.0%
!! CCTACTGTTAATGGTGTTAC+TGG + chr1_2:28092775-28092794 Msa0065590:CDS 40.0%
CAGCTAAACCAGTTCCTAAA+GGG - chr1_2:28092804-28092823 None:intergenic 40.0%
AATCCTAATCCAAGTCCATC+AGG - chr1_2:28092889-28092908 None:intergenic 40.0%
! GATGGACTTGGATTAGGATT+TGG + chr1_2:28092889-28092908 Msa0065590:CDS 40.0%
ACAAATTGTTGGAAAGGGTC+AGG + chr1_2:28092963-28092982 Msa0065590:CDS 40.0%
CAAATTGTTGGAAAGGGTCA+GGG + chr1_2:28092964-28092983 Msa0065590:CDS 40.0%
AAATTGTTGGAAAGGGTCAG+GGG + chr1_2:28092965-28092984 Msa0065590:CDS 40.0%
!! TACAGCACTTTTTGAAGGAG+GGG + chr1_2:28093035-28093054 Msa0065590:intron 40.0%
TCAGCAGTCGAAGAGATAAA+GGG - chr1_2:28093703-28093722 None:intergenic 40.0%
TTCAGCAGTCGAAGAGATAA+AGG - chr1_2:28093704-28093723 None:intergenic 40.0%
TTCTTTGGGTGAAAGATGGT+TGG + chr1_2:28093808-28093827 Msa0065590:intron 40.0%
CTACTTGCATTGAATAGTGG+AGG - chr1_2:28093838-28093857 None:intergenic 40.0%
!! ACTTTAGGACAATTCAGCCA+AGG + chr1_2:28093886-28093905 Msa0065590:intron 40.0%
TTTGATCTTCCTGGCAAGTA+TGG + chr1_2:28094057-28094076 Msa0065590:intron 40.0%
TAGAAACTTCCATACTTGCC+AGG - chr1_2:28094069-28094088 None:intergenic 40.0%
! GTGGATTGAAATGCAAGTCA+TGG - chr1_2:28094949-28094968 None:intergenic 40.0%
AAAGCAACCAACATTGCCAA+AGG - chr1_2:28095067-28095086 None:intergenic 40.0%
! AATGATTGGTTCTTTCCCTG+TGG - chr1_2:28095134-28095153 None:intergenic 40.0%
TGCATGAACAGCTCAATGAT+TGG - chr1_2:28095148-28095167 None:intergenic 40.0%
CTGTTCATGCATGACATTCT+TGG + chr1_2:28095157-28095176 Msa0065590:CDS 40.0%
TTCATGCATGACATTCTTGG+TGG + chr1_2:28092619-28092638 Msa0065590:CDS 40.0%
TTGTTGGGCAACATATACAG+TGG + chr1_2:28095214-28095233 Msa0065590:CDS 40.0%
GATTTAACACTCCACAAGGT+GGG + chr1_2:28095263-28095282 Msa0065590:CDS 40.0%
GAATGGCACCATTTGCATTA+GGG - chr1_2:28095297-28095316 None:intergenic 40.0%
!! ATTGTTGCTGTTTGGTGCAA+AGG - chr1_2:28095374-28095393 None:intergenic 40.0%
ACCTGAATTGGGTTCTCAAA+TGG + chr1_2:28095483-28095502 Msa0065590:CDS 40.0%
ACCATTTGAGAACCCAATTC+AGG - chr1_2:28095487-28095506 None:intergenic 40.0%
GAATTGGGTTCTCAAATGGT+TGG + chr1_2:28095487-28095506 Msa0065590:CDS 40.0%
! GAAAGCTCAAGGTGTTTATG+TGG + chr1_2:28095510-28095529 Msa0065590:CDS 40.0%
!! GTATTCACAGCCTTGTTTGA+AGG + chr1_2:28095565-28095584 Msa0065590:CDS 40.0%
ATATTCCCCTCCTTCAAACA+AGG - chr1_2:28095578-28095597 None:intergenic 40.0%
TTGTTTGAAGGAGGGGAATA+TGG + chr1_2:28095577-28095596 Msa0065590:CDS 40.0%
GTCGCGATTATCAGTAATAG+GGG + chr1_2:28095645-28095664 Msa0065590:CDS 40.0%
TCGCGATTATCAGTAATAGG+GGG + chr1_2:28095646-28095665 Msa0065590:CDS 40.0%
! TTATCAGTAATAGGGGGTAC+AGG + chr1_2:28095652-28095671 Msa0065590:CDS 40.0%
CAGGAAAGTTCAAGAATGCA+AGG + chr1_2:28095671-28095690 Msa0065590:CDS 40.0%
GGAAAGTTCAAGAATGCAAG+GGG + chr1_2:28095673-28095692 Msa0065590:CDS 40.0%
GAAAGTTCAAGAATGCAAGG+GGG + chr1_2:28095674-28095693 Msa0065590:CDS 40.0%
ATTGATCCAATTGCAGCCAC+AGG + chr1_2:28092574-28092593 Msa0065590:CDS 45.0%
GTATATGTTGCCGAGCAAAC+CGG - chr1_2:28092671-28092690 None:intergenic 45.0%
TTGCTCGGCAACATATACAG+TGG + chr1_2:28092673-28092692 Msa0065590:CDS 45.0%
AATCCAACTGGGGTTGCAAA+GGG - chr1_2:28092706-28092725 None:intergenic 45.0%
! GGGATTGGCATACTATCACT+TGG - chr1_2:28092736-28092755 None:intergenic 45.0%
!! GGTGTTACTGGTATCCCTTT+AGG + chr1_2:28092787-28092806 Msa0065590:intron 45.0%
! ACTGGTATCCCTTTAGGAAC+TGG + chr1_2:28092793-28092812 Msa0065590:intron 45.0%
CCAGCTAAACCAGTTCCTAA+AGG - chr1_2:28092805-28092824 None:intergenic 45.0%
! CCTTTAGGAACTGGTTTAGC+TGG + chr1_2:28092802-28092821 Msa0065590:intron 45.0%
CAGTTAACGTTAGGACCTGA+TGG + chr1_2:28092871-28092890 Msa0065590:CDS 45.0%
AATTGTTGGAAAGGGTCAGG+GGG + chr1_2:28092966-28092985 Msa0065590:CDS 45.0%
TATGTAGCAAGTTCGGCTGA+CGG + chr1_2:28092991-28093010 Msa0065590:CDS 45.0%
!! CTTTTTGAAGGAGGGGAGTA+TGG + chr1_2:28093042-28093061 Msa0065590:intron 45.0%
! ATGTCGCGATTATCGGTTGT+AGG + chr1_2:28093108-28093127 Msa0065590:CDS 45.0%
! ATTATCGGTTGTAGGAGGGA+CGG + chr1_2:28093116-28093135 Msa0065590:CDS 45.0%
! ATGGTGCTGAGACTTTGTTG+AGG + chr1_2:28093208-28093227 Msa0065590:CDS 45.0%
! TGAAGGTGTGTGAAAGCATG+TGG + chr1_2:28093275-28093294 Msa0065590:intron 45.0%
! GAAGGTGTGTGAAAGCATGT+GGG + chr1_2:28093276-28093295 Msa0065590:intron 45.0%
GCAATATGGGAACTTGGCTT+TGG + chr1_2:28093424-28093443 Msa0065590:intron 45.0%
ATGCATATAGTAGAGTGGGG+TGG + chr1_2:28094230-28094249 Msa0065590:intron 45.0%
TGCATATAGTAGAGTGGGGT+GGG + chr1_2:28094231-28094250 Msa0065590:intron 45.0%
TGACAAGTCAGCAACATGAG+AGG - chr1_2:28094599-28094618 None:intergenic 45.0%
GTGGCGTTGTTGAGATGTAA+TGG - chr1_2:28094801-28094820 None:intergenic 45.0%
! GAATGAAGAGTGTGTTGGAG+TGG - chr1_2:28094912-28094931 None:intergenic 45.0%
! AGAGGGAATGAAGAGTGTGT+TGG - chr1_2:28094917-28094936 None:intergenic 45.0%
TCTTGGTGGAAGTAACCCAA+CGG + chr1_2:28095174-28095193 Msa0065590:CDS 45.0%
TTGCCCAACAAACCAGTTAC+CGG - chr1_2:28095205-28095224 None:intergenic 45.0%
GGATTTAACACTCCACAAGG+TGG + chr1_2:28095262-28095281 Msa0065590:CDS 45.0%
GCACCATTTGCATTAGGGAT+TGG - chr1_2:28095292-28095311 None:intergenic 45.0%
GGAATGGCACCATTTGCATT+AGG - chr1_2:28095298-28095317 None:intergenic 45.0%
TATCCCATTAGGAACTGGCT+TGG + chr1_2:28095339-28095358 Msa0065590:CDS 45.0%
AACAATGCTCAGGTGCAGTT+AGG + chr1_2:28095397-28095416 Msa0065590:CDS 45.0%
AATCCTAGTCCAAGTCCATC+AGG - chr1_2:28095424-28095443 None:intergenic 45.0%
! GATGGACTTGGACTAGGATT+TGG + chr1_2:28095424-28095443 Msa0065590:CDS 45.0%
CAAATGGTTGGGAAAGCTCA+AGG + chr1_2:28095499-28095518 Msa0065590:CDS 45.0%
TATGTGGCAAGTTCAGCAGA+TGG + chr1_2:28095526-28095545 Msa0065590:CDS 45.0%
!! TTCACAGCCTTGTTTGAAGG+AGG + chr1_2:28095568-28095587 Msa0065590:CDS 45.0%
!! TCACAGCCTTGTTTGAAGGA+GGG + chr1_2:28095569-28095588 Msa0065590:CDS 45.0%
ATTTGTCCTGGTGGGATAAG+AGG - chr1_2:28095715-28095734 None:intergenic 45.0%
!!! ATATTTTAAAAAAATAGATT+TGG + chr1_2:28094745-28094764 Msa0065590:intron 5.0%
TCCAATTGCAGCCACAGGAA+AGG + chr1_2:28092579-28092598 Msa0065590:CDS 50.0%
TCCTTTCCTGTGGCTGCAAT+TGG - chr1_2:28092583-28092602 None:intergenic 50.0%
! TCTTGGTGGCAGTAACCCAA+CGG + chr1_2:28092633-28092652 Msa0065590:CDS 50.0%
GAATCCAACTGGGGTTGCAA+AGG - chr1_2:28092707-28092726 None:intergenic 50.0%
!! ACGTTAGGACCTGATGGACT+TGG + chr1_2:28092877-28092896 Msa0065590:CDS 50.0%
!! GGACCTGATGGACTTGGATT+AGG + chr1_2:28092883-28092902 Msa0065590:CDS 50.0%
! GGGGGTGTATGTAGCAAGTT+CGG + chr1_2:28092984-28093003 Msa0065590:CDS 50.0%
ATGTAGCAAGTTCGGCTGAC+GGG + chr1_2:28092992-28093011 Msa0065590:CDS 50.0%
TGACGGGAGTAGACAGATGA+TGG + chr1_2:28093008-28093027 Msa0065590:CDS 50.0%
! TCGCGATTATCGGTTGTAGG+AGG + chr1_2:28093111-28093130 Msa0065590:CDS 50.0%
! CGCGATTATCGGTTGTAGGA+GGG + chr1_2:28093112-28093131 Msa0065590:CDS 50.0%
! TTATCGGTTGTAGGAGGGAC+GGG + chr1_2:28093117-28093136 Msa0065590:CDS 50.0%
CTGAGACCTCTTATTCCACC+TGG + chr1_2:28093171-28093190 Msa0065590:CDS 50.0%
ACCTCTTATTCCACCTGGAC+AGG + chr1_2:28093176-28093195 Msa0065590:CDS 50.0%
ACCTGTCCAGGTGGAATAAG+AGG - chr1_2:28093180-28093199 None:intergenic 50.0%
GGACAATTCAGCCAAGGCAT+AGG + chr1_2:28093892-28093911 Msa0065590:intron 50.0%
GCGATCTTAGTCCTATGCCT+TGG - chr1_2:28093906-28093925 None:intergenic 50.0%
GCATATAGTAGAGTGGGGTG+GGG + chr1_2:28094232-28094251 Msa0065590:intron 50.0%
GTTGGAGTGGTTGTGAGACA+TGG - chr1_2:28094899-28094918 None:intergenic 50.0%
TTGACCCTATTGCAGCCACA+GGG + chr1_2:28095116-28095135 Msa0065590:CDS 50.0%
CTTTCCCTGTGGCTGCAATA+GGG - chr1_2:28095123-28095142 None:intergenic 50.0%
TCTTTCCCTGTGGCTGCAAT+AGG - chr1_2:28095124-28095143 None:intergenic 50.0%
!! TCGACCGGTAACTGGTTTGT+TGG + chr1_2:28095198-28095217 Msa0065590:CDS 50.0%
!! CGACCGGTAACTGGTTTGTT+GGG + chr1_2:28095199-28095218 Msa0065590:CDS 50.0%
!! TTGGTGTAGCAAAGGGCACT+TGG - chr1_2:28095240-28095259 None:intergenic 50.0%
GTGCCCTTTGCTACACCAAT+AGG + chr1_2:28095241-28095260 Msa0065590:CDS 50.0%
AACGCCATTGACAGTGGGAA+TGG - chr1_2:28095314-28095333 None:intergenic 50.0%
ACCGGTATCCCATTAGGAAC+TGG + chr1_2:28095334-28095353 Msa0065590:CDS 50.0%
GCCAGTTCCTAATGGGATAC+CGG - chr1_2:28095338-28095357 None:intergenic 50.0%
CAGCCAAGCCAGTTCCTAAT+GGG - chr1_2:28095345-28095364 None:intergenic 50.0%
!! CAGTTAGGACCTGATGGACT+TGG + chr1_2:28095412-28095431 Msa0065590:CDS 50.0%
AGATGGCAGCAGACAGATGA+TGG + chr1_2:28095543-28095562 Msa0065590:CDS 50.0%
!! CACAGCCTTGTTTGAAGGAG+GGG + chr1_2:28095570-28095589 Msa0065590:CDS 50.0%
ACAAATTGCCACCGATGGTG+CGG + chr1_2:28095729-28095748 Msa0065590:CDS 50.0%
GTACCCTTTGCAACCCCAGT+TGG + chr1_2:28092700-28092719 Msa0065590:CDS 55.0%
! TATCGGTTGTAGGAGGGACG+GGG + chr1_2:28093118-28093137 Msa0065590:CDS 55.0%
TCAGTAGCAACCTGTCCAGG+TGG - chr1_2:28093189-28093208 None:intergenic 55.0%
CCATCAGTAGCAACCTGTCC+AGG - chr1_2:28093192-28093211 None:intergenic 55.0%
CCTGGACAGGTTGCTACTGA+TGG + chr1_2:28093189-28093208 Msa0065590:CDS 55.0%
TATAGTAGAGTGGGGTGGGG+TGG + chr1_2:28094235-28094254 Msa0065590:intron 55.0%
GTTGACCCTATTGCAGCCAC+AGG + chr1_2:28095115-28095134 Msa0065590:CDS 55.0%
AAGTAACCCAACGGCTCGAC+CGG + chr1_2:28095183-28095202 Msa0065590:CDS 55.0%
GGGATTGGAATCCCACCTTG+TGG - chr1_2:28095277-28095296 None:intergenic 55.0%
!! GGTGCCATTCCCACTGTCAA+TGG + chr1_2:28095307-28095326 Msa0065590:CDS 55.0%
CCGGTAACGCCATTGACAGT+GGG - chr1_2:28095319-28095338 None:intergenic 55.0%
CCCACTGTCAATGGCGTTAC+CGG + chr1_2:28095316-28095335 Msa0065590:CDS 55.0%
ACCGGTAACGCCATTGACAG+TGG - chr1_2:28095320-28095339 None:intergenic 55.0%
GGCGTTACCGGTATCCCATT+AGG + chr1_2:28095328-28095347 Msa0065590:CDS 55.0%
CCAGCCAAGCCAGTTCCTAA+TGG - chr1_2:28095346-28095365 None:intergenic 55.0%
!! CCATTAGGAACTGGCTTGGC+TGG + chr1_2:28095343-28095362 Msa0065590:CDS 55.0%
CAGGTGCAGTTAGGACCTGA+TGG + chr1_2:28095406-28095425 Msa0065590:CDS 55.0%
!! GGACCTGATGGACTTGGACT+AGG + chr1_2:28095418-28095437 Msa0065590:CDS 55.0%
CTGAGACCTCTTATCCCACC+AGG + chr1_2:28095706-28095725 Msa0065590:CDS 55.0%
CGGTGGCAATTTGTCCTGGT+GGG - chr1_2:28095723-28095742 None:intergenic 55.0%
TCGGTGGCAATTTGTCCTGG+TGG - chr1_2:28095724-28095743 None:intergenic 55.0%
CCATCGGTGGCAATTTGTCC+TGG - chr1_2:28095727-28095746 None:intergenic 55.0%
CCAGGACAAATTGCCACCGA+TGG + chr1_2:28095724-28095743 Msa0065590:CDS 55.0%
CAGCAATGTCTCCGCACCAT+CGG - chr1_2:28095743-28095762 None:intergenic 55.0%
ATGGTGCGGAGACATTGCTG+AGG + chr1_2:28095743-28095762 Msa0065590:CDS 55.0%
!! CGACCAGTGACCGGTTTGCT+CGG + chr1_2:28092658-28092677 Msa0065590:CDS 60.0%
TTGCCGAGCAAACCGGTCAC+TGG - chr1_2:28092664-28092683 None:intergenic 60.0%
GAGTGGGGTGGGGTGGAAAT+AGG + chr1_2:28094242-28094261 Msa0065590:intron 60.0%
CAGTTACCGGTCGAGCCGTT+GGG - chr1_2:28095192-28095211 None:intergenic 60.0%
CAATGTCTCCGCACCATCGG+TGG - chr1_2:28095740-28095759 None:intergenic 60.0%
CGGTCACTGGTCGAGCCGTT+GGG - chr1_2:28092651-28092670 None:intergenic 65.0%
CCAACGGCTCGACCAGTGAC+CGG + chr1_2:28092649-28092668 Msa0065590:CDS 65.0%
CCAGTTACCGGTCGAGCCGT+TGG - chr1_2:28095193-28095212 None:intergenic 65.0%
CCAACGGCTCGACCGGTAAC+TGG + chr1_2:28095190-28095209 Msa0065590:CDS 65.0%
CCGGTCACTGGTCGAGCCGT+TGG - chr1_2:28092652-28092671 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 28092553 28095789 28092553 ID=Msa0065590;Name=Msa0065590
chr1_2 mRNA 28092553 28095789 28092553 ID=Msa0065590-mRNA-1;Parent=Msa0065590;Name=Msa0065590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0.25|4|0|452
chr1_2 exon 28092553 28092796 28092553 ID=Msa0065590-mRNA-1:exon:9667;Parent=Msa0065590-mRNA-1
chr1_2 exon 28092809 28093029 28092809 ID=Msa0065590-mRNA-1:exon:9668;Parent=Msa0065590-mRNA-1
chr1_2 exon 28093096 28093236 28093096 ID=Msa0065590-mRNA-1:exon:9669;Parent=Msa0065590-mRNA-1
chr1_2 exon 28095037 28095789 28095037 ID=Msa0065590-mRNA-1:exon:9670;Parent=Msa0065590-mRNA-1
chr1_2 CDS 28092553 28092796 28092553 ID=Msa0065590-mRNA-1:cds;Parent=Msa0065590-mRNA-1
chr1_2 CDS 28092809 28093029 28092809 ID=Msa0065590-mRNA-1:cds;Parent=Msa0065590-mRNA-1
chr1_2 CDS 28093096 28093236 28093096 ID=Msa0065590-mRNA-1:cds;Parent=Msa0065590-mRNA-1
chr1_2 CDS 28095037 28095789 28095037 ID=Msa0065590-mRNA-1:cds;Parent=Msa0065590-mRNA-1
Gene Sequence

>Msa0065590

ATGGCAACAAACATAACAGCTATTGATCCAATTGCAGCCACAGGAAAGGAACCAATCATTGAGTTGTTCATGCATGACATTCTTGGTGGCAGTAACCCAACGGCTCGACCAGTGACCGGTTTGCTCGGCAACATATACAGTGGTCAAGTACCCTTTGCAACCCCAGTTGGATTCAACATTCCAAGTGATAGTATGCCAATCCCTAATGCAAATGGTGTTAATCCTACTGTTAATGGTGTTACTGGAACTGGTTTAGCTGGTACTTCTTTTGCACCAAACAATAACAATAACAATCAAAACAATGTTCAGTTAACGTTAGGACCTGATGGACTTGGATTAGGATTTGGTACAATCACTGTTATTGATGATATATTAACATCTCAACCAGAGTTAGGTTCACAAATTGTTGGAAAGGGTCAGGGGGTGTATGTAGCAAGTTCGGCTGACGGGAGTAGACAGATGATGATTGGAAGTACTATGTCGCGATTATCGGTTGTAGGAGGGACGGGGAAGTTTAAGTATGCTAAAGGGTTTGCTGAACTGAGACCTCTTATTCCACCTGGACAGGTTGCTACTGATGGTGCTGAGACTTTGTTGAGGATTACTATGGCTATGCGATTACTAGCTATATCTCCTTTGGCAATGTTGGTTGCTTTTTCTTATTTAACAATGTCTATAACAGCAGTTGACCCTATTGCAGCCACAGGGAAAGAACCAATCATTGAGCTGTTCATGCATGACATTCTTGGTGGAAGTAACCCAACGGCTCGACCGGTAACTGGTTTGTTGGGCAACATATACAGTGGCCAAGTGCCCTTTGCTACACCAATAGGATTTAACACTCCACAAGGTGGGATTCCAATCCCTAATGCAAATGGTGCCATTCCCACTGTCAATGGCGTTACCGGTATCCCATTAGGAACTGGCTTGGCTGGTACTTCCTTTGCACCAAACAGCAACAATCAAAACAATGCTCAGGTGCAGTTAGGACCTGATGGACTTGGACTAGGATTTGGTACAATCACTGTTATTGATGATATACTAACATCTCAACCTGAATTGGGTTCTCAAATGGTTGGGAAAGCTCAAGGTGTTTATGTGGCAAGTTCAGCAGATGGCAGCAGACAGATGATGGTATTCACAGCCTTGTTTGAAGGAGGGGAATATGGAGATAGCTTGAACTTTTATGGTTTGTATAAGATAGGAAGTACCATGTCGCGATTATCAGTAATAGGGGGTACAGGAAAGTTCAAGAATGCAAGGGGGTTTGCAGAACTGAGACCTCTTATCCCACCAGGACAAATTGCCACCGATGGTGCGGAGACATTGCTGAGGATGAGTGTCCATTTGAAATACTAG
Protein sequence

>Msa0065590

MATNITAIDPIAATGKEPIIELFMHDILGGSNPTARPVTGLLGNIYSGQVPFATPVGFNIPSDSMPIPNANGVNPTVNGVTGTGLAGTSFAPNNNNNNQNNVQLTLGPDGLGLGFGTITVIDDILTSQPELGSQIVGKGQGVYVASSADGSRQMMIGSTMSRLSVVGGTGKFKYAKGFAELRPLIPPGQVATDGAETLLRITMAMRLLAISPLAMLVAFSYLTMSITAVDPIAATGKEPIIELFMHDILGGSNPTARPVTGLLGNIYSGQVPFATPIGFNTPQGGIPIPNANGAIPTVNGVTGIPLGTGLAGTSFAPNSNNQNNAQVQLGPDGLGLGFGTITVIDDILTSQPELGSQMVGKAQGVYVASSADGSRQMMVFTALFEGGEYGDSLNFYGLYKIGSTMSRLSVIGGTGKFKNARGFAELRPLIPPGQIATDGAETLLRMSVHLKY*