Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111040 | KAF9688951.1 | 68.143 | 474 | 118 | 7 | 5 | 452 | 25 | 491 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111040 | sp|Q9T0H8|DIR18_ARATH | 67.480 | 246 | 78 | 1 | 207 | 452 | 1 | 244 | 1.96e-110 | 328 |
| Msa0111040 | sp|Q9T0H8|DIR18_ARATH | 58.621 | 232 | 63 | 4 | 1 | 206 | 19 | 243 | 3.59e-76 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111040 | A0A6N2M652 | 68.000 | 475 | 120 | 7 | 5 | 452 | 25 | 494 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017350 | Msa0111040 | 0.815369 | 9.575174e-52 | -8.615850e-47 |
| Msa0059880 | Msa0111040 | 0.813777 | 2.155591e-51 | -8.615850e-47 |
| Msa0065590 | Msa0111040 | 0.989553 | 1.284236e-178 | -8.615850e-47 |
| Msa0111040 | Msa0150910 | 0.804436 | 2.162499e-49 | -8.615850e-47 |
| Msa0111040 | Msa0154960 | 0.805415 | 1.349958e-49 | -8.615850e-47 |
| Msa0111040 | Msa0212550 | 0.809210 | 2.117924e-50 | -8.615850e-47 |
| Msa0111040 | Msa0252930 | 0.802501 | 5.445849e-49 | -8.615850e-47 |
| Msa0111040 | Msa0274260 | 0.811490 | 6.819975e-51 | -8.615850e-47 |
| Msa0111040 | Msa0587870 | 0.800345 | 1.505567e-48 | -8.615850e-47 |
| Msa0111040 | Msa0591490 | 0.810599 | 1.064052e-50 | -8.615850e-47 |
| Msa0111040 | Msa0665830 | 0.807422 | 5.094582e-50 | -8.615850e-47 |
| Msa0111040 | Msa0761420 | 0.804480 | 2.117086e-49 | -8.615850e-47 |
| Msa0111040 | Msa0896920 | 0.807006 | 6.240078e-50 | -8.615850e-47 |
| Msa0111040 | Msa0913550 | 0.806602 | 7.594391e-50 | -8.615850e-47 |
| Msa0111040 | Msa0951150 | 0.802592 | 5.214496e-49 | -8.615850e-47 |
| Msa0111040 | Msa1055710 | -0.803731 | 3.030849e-49 | -8.615850e-47 |
| Msa0111040 | Msa1087380 | 0.800122 | 1.671170e-48 | -8.615850e-47 |
| Msa0111040 | Msa1445900 | 0.803290 | 3.740527e-49 | -8.615850e-47 |
| Msa0111040 | Msa1459610 | 0.800208 | 1.605290e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111040 | MtrunA17_Chr1g0169291 | 98.000 | 250 | 5 | 0 | 203 | 452 | 1 | 250 | 1.35e-172 | 484 |
| Msa0111040 | MtrunA17_Chr1g0169291 | 76.419 | 229 | 26 | 3 | 4 | 206 | 23 | 249 | 9.87e-107 | 316 |
| Msa0111040 | MtrunA17_Chr1g0169511 | 98.000 | 250 | 5 | 0 | 203 | 452 | 1 | 250 | 6.94e-172 | 482 |
| Msa0111040 | MtrunA17_Chr1g0169511 | 76.419 | 229 | 26 | 3 | 4 | 206 | 23 | 249 | 2.45e-112 | 330 |
| Msa0111040 | MtrunA17_Chr1g0169281 | 84.739 | 249 | 36 | 1 | 206 | 452 | 8 | 256 | 7.99e-142 | 406 |
| Msa0111040 | MtrunA17_Chr1g0169281 | 84.483 | 232 | 10 | 2 | 1 | 206 | 24 | 255 | 2.24e-120 | 351 |
| Msa0111040 | MtrunA17_Chr1g0212861 | 40.426 | 235 | 121 | 5 | 237 | 452 | 119 | 353 | 1.36e-39 | 145 |
| Msa0111040 | MtrunA17_Chr1g0212861 | 34.322 | 236 | 106 | 6 | 16 | 205 | 119 | 351 | 1.06e-24 | 104 |
| Msa0111040 | MtrunA17_Chr4g0030681 | 44.053 | 227 | 114 | 5 | 237 | 452 | 80 | 304 | 2.09e-39 | 144 |
| Msa0111040 | MtrunA17_Chr4g0030681 | 36.283 | 226 | 99 | 5 | 16 | 202 | 80 | 299 | 7.43e-25 | 103 |
| Msa0111040 | MtrunA17_Chr4g0030731 | 42.478 | 226 | 120 | 4 | 237 | 452 | 78 | 303 | 2.31e-39 | 144 |
| Msa0111040 | MtrunA17_Chr4g0030731 | 36.283 | 226 | 100 | 5 | 16 | 202 | 78 | 298 | 8.79e-25 | 103 |
| Msa0111040 | MtrunA17_Chr7g0221601 | 39.754 | 244 | 114 | 8 | 231 | 450 | 153 | 387 | 3.39e-39 | 145 |
| Msa0111040 | MtrunA17_Chr7g0221601 | 33.594 | 256 | 104 | 8 | 2 | 205 | 146 | 387 | 5.67e-25 | 105 |
| Msa0111040 | MtrunA17_Chr4g0030671 | 32.979 | 282 | 170 | 8 | 184 | 450 | 3 | 280 | 2.63e-35 | 132 |
| Msa0111040 | MtrunA17_Chr4g0030671 | 33.333 | 225 | 110 | 7 | 18 | 205 | 59 | 280 | 1.61e-21 | 94.4 |
| Msa0111040 | MtrunA17_Chr1g0212871 | 32.367 | 207 | 110 | 5 | 241 | 442 | 51 | 232 | 5.83e-21 | 91.7 |
| Msa0111040 | MtrunA17_Chr1g0175911 | 40.000 | 90 | 53 | 1 | 337 | 425 | 81 | 170 | 9.73e-14 | 69.7 |
| Msa0111040 | MtrunA17_Chr4g0024951 | 35.345 | 116 | 66 | 3 | 338 | 450 | 66 | 175 | 2.33e-13 | 68.2 |
| Msa0111040 | MtrunA17_Chr7g0259071 | 42.553 | 94 | 52 | 2 | 336 | 427 | 76 | 169 | 3.34e-13 | 68.2 |
| Msa0111040 | MtrunA17_Chr4g0068381 | 35.955 | 89 | 56 | 1 | 336 | 423 | 66 | 154 | 6.84e-13 | 67.0 |
| Msa0111040 | MtrunA17_Chr4g0005111 | 41.111 | 90 | 52 | 1 | 338 | 426 | 78 | 167 | 9.84e-13 | 66.6 |
| Msa0111040 | MtrunA17_Chr7g0259091 | 40.000 | 95 | 55 | 2 | 335 | 427 | 78 | 172 | 1.18e-12 | 66.6 |
| Msa0111040 | MtrunA17_Chr3g0085321 | 37.963 | 108 | 64 | 2 | 320 | 424 | 57 | 164 | 1.23e-12 | 66.6 |
| Msa0111040 | MtrunA17_Chr4g0068391 | 38.000 | 100 | 59 | 3 | 330 | 427 | 60 | 158 | 1.57e-12 | 65.9 |
| Msa0111040 | MtrunA17_Chr4g0005011 | 31.624 | 117 | 73 | 2 | 337 | 452 | 86 | 196 | 3.13e-12 | 65.5 |
| Msa0111040 | MtrunA17_Chr4g0024961 | 40.909 | 88 | 51 | 1 | 338 | 424 | 66 | 153 | 4.10e-12 | 64.7 |
| Msa0111040 | MtrunA17_Chr3g0085301 | 34.579 | 107 | 67 | 2 | 321 | 424 | 63 | 169 | 6.12e-12 | 64.7 |
| Msa0111040 | MtrunA17_Chr7g0259101 | 40.000 | 95 | 55 | 2 | 335 | 427 | 78 | 172 | 1.18e-11 | 66.2 |
| Msa0111040 | MtrunA17_Chr7g0259101 | 40.000 | 95 | 55 | 2 | 335 | 427 | 277 | 371 | 1.31e-11 | 66.2 |
| Msa0111040 | MtrunA17_Chr3g0085311 | 39.362 | 94 | 56 | 1 | 337 | 429 | 76 | 169 | 1.26e-11 | 63.5 |
| Msa0111040 | MtrunA17_Chr4g0005131 | 39.362 | 94 | 56 | 1 | 337 | 429 | 78 | 171 | 2.56e-11 | 62.8 |
| Msa0111040 | MtrunA17_Chr7g0259121 | 39.175 | 97 | 53 | 2 | 336 | 427 | 76 | 171 | 4.44e-11 | 62.4 |
| Msa0111040 | MtrunA17_Chr3g0090231 | 32.110 | 109 | 73 | 1 | 317 | 424 | 52 | 160 | 8.41e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111040 | AT4G13580.1 | 67.480 | 246 | 78 | 1 | 207 | 452 | 1 | 244 | 1.99e-111 | 328 |
| Msa0111040 | AT4G13580.1 | 58.621 | 232 | 63 | 4 | 1 | 206 | 19 | 243 | 3.65e-77 | 241 |
| Msa0111040 | AT3G24020.1 | 66.802 | 247 | 76 | 3 | 207 | 452 | 2 | 243 | 2.17e-110 | 326 |
| Msa0111040 | AT3G24020.1 | 57.759 | 232 | 65 | 4 | 1 | 206 | 18 | 242 | 2.22e-77 | 241 |
| Msa0111040 | AT1G07730.2 | 43.913 | 230 | 105 | 6 | 243 | 452 | 164 | 389 | 1.56e-43 | 157 |
| Msa0111040 | AT1G07730.2 | 39.381 | 226 | 95 | 7 | 22 | 206 | 164 | 388 | 2.32e-23 | 101 |
| Msa0111040 | AT2G28670.2 | 44.348 | 230 | 102 | 6 | 245 | 452 | 1 | 226 | 6.61e-42 | 148 |
| Msa0111040 | AT2G28670.2 | 39.111 | 225 | 93 | 7 | 24 | 205 | 1 | 224 | 2.06e-23 | 98.6 |
| Msa0111040 | AT2G28670.1 | 44.397 | 232 | 103 | 6 | 243 | 452 | 209 | 436 | 4.35e-41 | 152 |
| Msa0111040 | AT2G28670.1 | 39.207 | 227 | 94 | 7 | 22 | 205 | 209 | 434 | 4.90e-23 | 101 |
| Msa0111040 | AT2G39430.1 | 38.843 | 242 | 124 | 6 | 234 | 452 | 80 | 320 | 4.72e-38 | 141 |
| Msa0111040 | AT2G39430.1 | 34.979 | 243 | 112 | 6 | 13 | 209 | 80 | 322 | 7.73e-28 | 113 |
| Msa0111040 | AT3G55230.1 | 37.860 | 243 | 127 | 6 | 233 | 452 | 62 | 303 | 1.74e-37 | 139 |
| Msa0111040 | AT3G55230.1 | 36.667 | 240 | 106 | 7 | 12 | 205 | 62 | 301 | 1.93e-31 | 122 |
| Msa0111040 | AT1G65870.1 | 36.364 | 110 | 67 | 2 | 324 | 430 | 62 | 171 | 4.95e-14 | 70.9 |
| Msa0111040 | AT5G42510.1 | 41.304 | 92 | 53 | 1 | 334 | 424 | 69 | 160 | 2.35e-13 | 68.9 |
| Msa0111040 | AT3G13650.1 | 37.634 | 93 | 57 | 1 | 338 | 429 | 74 | 166 | 7.59e-13 | 67.4 |
| Msa0111040 | AT5G42500.1 | 38.710 | 93 | 56 | 1 | 336 | 427 | 74 | 166 | 1.69e-12 | 66.2 |
| Msa0111040 | AT3G58090.1 | 37.500 | 88 | 54 | 1 | 341 | 427 | 163 | 250 | 6.38e-12 | 66.2 |
| Msa0111040 | AT1G22900.1 | 39.773 | 88 | 52 | 1 | 338 | 424 | 84 | 171 | 6.24e-11 | 62.0 |
Find 154 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCCCTGTGGCTGCAAT+AGG | 0.227062 | 1_3:-24477605 | None:intergenic |
| TTGTTTGAAGGAGGGGAATA+TGG | 0.272005 | 1_3:+24478061 | Msa0111040:CDS |
| ACTAACATCTCAACCTGAAT+TGG | 0.273439 | 1_3:+24477955 | Msa0111040:CDS |
| TCCTTTCCTGTGGCTGCAAT+TGG | 0.276263 | 1_3:-24475064 | None:intergenic |
| CCTACTGTTAATGGTGTTAC+TGG | 0.279068 | 1_3:+24475259 | Msa0111040:CDS |
| CCCACTGTCAATGGCGTTAC+CGG | 0.292317 | 1_3:+24477800 | Msa0111040:CDS |
| ACCATTTGAGAACCCAATTC+AGG | 0.294933 | 1_3:-24477968 | None:intergenic |
| GGATTAACACCATTTGCATT+AGG | 0.297019 | 1_3:-24475238 | None:intergenic |
| ATGTCGCGATTATCAGTAAT+AGG | 0.309916 | 1_3:+24478127 | Msa0111040:CDS |
| AAGTACTATGTCGCGATTAT+CGG | 0.316886 | 1_3:+24475585 | Msa0111040:CDS |
| GGACCTGATGGACTTGGATT+AGG | 0.319881 | 1_3:+24475367 | Msa0111040:CDS |
| GGAATGGCACCATTTGCATT+AGG | 0.340305 | 1_3:-24477779 | None:intergenic |
| GATGGACTTGGATTAGGATT+TGG | 0.351208 | 1_3:+24475373 | Msa0111040:CDS |
| GATTAACACCATTTGCATTA+GGG | 0.356622 | 1_3:-24475237 | None:intergenic |
| GGTGTTAATCCTACTGTTAA+TGG | 0.373730 | 1_3:+24475250 | Msa0111040:CDS |
| GAATGGCACCATTTGCATTA+GGG | 0.374121 | 1_3:-24477778 | None:intergenic |
| CCAACGGCTCGACCGGTAAC+TGG | 0.374627 | 1_3:+24477674 | Msa0111040:CDS |
| TTAACATCTCAACCAGAGTT+AGG | 0.377354 | 1_3:+24475421 | Msa0111040:CDS |
| TCGACCGGTAACTGGTTTGT+TGG | 0.377440 | 1_3:+24477682 | Msa0111040:CDS |
| GATGGACTTGGACTAGGATT+TGG | 0.379130 | 1_3:+24477908 | Msa0111040:CDS |
| ATTACTAGCTATATCTCCTT+TGG | 0.380043 | 1_3:+24477532 | Msa0111040:CDS |
| GTGCCCTTTGCTACACCAAT+AGG | 0.386638 | 1_3:+24477725 | Msa0111040:CDS |
| CTTTCCCTGTGGCTGCAATA+GGG | 0.392550 | 1_3:-24477604 | None:intergenic |
| CCAGCCAAGCCAGTTCCTAA+TGG | 0.392918 | 1_3:-24477827 | None:intergenic |
| TGTCGCGATTATCAGTAATA+GGG | 0.400451 | 1_3:+24478128 | Msa0111040:CDS |
| TGATTGTTATTGTTATTGTT+TGG | 0.402312 | 1_3:-24475322 | None:intergenic |
| CTGTTCATGCATGACATTCT+TGG | 0.409600 | 1_3:+24477641 | Msa0111040:CDS |
| ACCTGAATTGGGTTCTCAAA+TGG | 0.412760 | 1_3:+24477967 | Msa0111040:CDS |
| CTTGGAATGTTGAATCCAAC+TGG | 0.413683 | 1_3:-24475199 | None:intergenic |
| ACAAATTGTTGGAAAGGGTC+AGG | 0.415848 | 1_3:+24475447 | Msa0111040:CDS |
| ACCTGTCCAGGTGGAATAAG+AGG | 0.418722 | 1_3:-24475661 | None:intergenic |
| TATATCTCCTTTGGCAATGT+TGG | 0.426857 | 1_3:+24477541 | Msa0111040:CDS |
| TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1_3:+24475100 | Msa0111040:CDS |
| CCTTTAGGAACTGGTTTAGC+TGG | 0.430422 | 1_3:+24475286 | Msa0111040:intron |
| CGACCGGTAACTGGTTTGTT+GGG | 0.438212 | 1_3:+24477683 | Msa0111040:CDS |
| GCACCATTTGCATTAGGGAT+TGG | 0.438940 | 1_3:-24477773 | None:intergenic |
| TTGCCCAACAAACCAGTTAC+CGG | 0.439077 | 1_3:-24477686 | None:intergenic |
| TTATCGGTTGTAGGAGGGAC+GGG | 0.439221 | 1_3:+24475601 | Msa0111040:CDS |
| CACAGCCTTGTTTGAAGGAG+GGG | 0.440382 | 1_3:+24478054 | Msa0111040:CDS |
| CCATTAGGAACTGGCTTGGC+TGG | 0.442150 | 1_3:+24477827 | Msa0111040:CDS |
| CAGCCAAGCCAGTTCCTAAT+GGG | 0.442709 | 1_3:-24477826 | None:intergenic |
| CCGGTCACTGGTCGAGCCGT+TGG | 0.445896 | 1_3:-24475133 | None:intergenic |
| TGTGGAGTGTTAAATCCTAT+TGG | 0.447348 | 1_3:-24477740 | None:intergenic |
| ACACCATTTGCATTAGGGAT+TGG | 0.448404 | 1_3:-24475232 | None:intergenic |
| ACCGGTATCCCATTAGGAAC+TGG | 0.448563 | 1_3:+24477818 | Msa0111040:CDS |
| ACCTCTTATTCCACCTGGAC+AGG | 0.449379 | 1_3:+24475660 | Msa0111040:CDS |
| AATTGGGTTCTCAAATGGTT+GGG | 0.455097 | 1_3:+24477972 | Msa0111040:CDS |
| CTAACATCTCAACCTGAATT+GGG | 0.457016 | 1_3:+24477956 | Msa0111040:CDS |
| GGAAGTTTAAGTATGCTAAA+GGG | 0.460142 | 1_3:+24475623 | Msa0111040:CDS |
| GGCGTTACCGGTATCCCATT+AGG | 0.460896 | 1_3:+24477812 | Msa0111040:CDS |
| ATTTGTCCTGGTGGGATAAG+AGG | 0.461816 | 1_3:-24478196 | None:intergenic |
| GGGAAGTTTAAGTATGCTAA+AGG | 0.463071 | 1_3:+24475622 | Msa0111040:CDS |
| CACAGTACTAGTATTTCAAA+TGG | 0.467016 | 1_3:-24478258 | None:intergenic |
| AACAATGTTCAGTTAACGTT+AGG | 0.471550 | 1_3:+24475346 | Msa0111040:CDS |
| GTATTCACAGCCTTGTTTGA+AGG | 0.475516 | 1_3:+24478049 | Msa0111040:CDS |
| GGTTCACAAATTGTTGGAAA+GGG | 0.477487 | 1_3:+24475442 | Msa0111040:CDS |
| TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1_3:-24475088 | None:intergenic |
| CAGTTACCGGTCGAGCCGTT+GGG | 0.479271 | 1_3:-24477673 | None:intergenic |
| GAATTGGGTTCTCAAATGGT+TGG | 0.482363 | 1_3:+24477971 | Msa0111040:CDS |
| GGTGCCATTCCCACTGTCAA+TGG | 0.483229 | 1_3:+24477791 | Msa0111040:CDS |
| CCAGTTACCGGTCGAGCCGT+TGG | 0.485169 | 1_3:-24477674 | None:intergenic |
| AACAATGCTCAGGTGCAGTT+AGG | 0.485687 | 1_3:+24477881 | Msa0111040:CDS |
| ATGCCAATCCCTAATGCAAA+TGG | 0.485841 | 1_3:+24475229 | Msa0111040:CDS |
| CGGTCACTGGTCGAGCCGTT+GGG | 0.485879 | 1_3:-24475132 | None:intergenic |
| CAAATTGTTGGAAAGGGTCA+GGG | 0.488459 | 1_3:+24475448 | Msa0111040:CDS |
| TGCATGAACAGCTCAATGAT+TGG | 0.499700 | 1_3:-24477629 | None:intergenic |
| AATCCTAATCCAAGTCCATC+AGG | 0.506312 | 1_3:-24475370 | None:intergenic |
| AATCCTAGTCCAAGTCCATC+AGG | 0.508608 | 1_3:-24477905 | None:intergenic |
| ATTCCAATCCCTAATGCAAA+TGG | 0.509041 | 1_3:+24477770 | Msa0111040:CDS |
| GAGTTAGGTTCACAAATTGT+TGG | 0.509703 | 1_3:+24475436 | Msa0111040:CDS |
| CGACCAGTGACCGGTTTGCT+CGG | 0.510231 | 1_3:+24475142 | Msa0111040:CDS |
| GGACCTGATGGACTTGGACT+AGG | 0.513199 | 1_3:+24477902 | Msa0111040:CDS |
| CCTGGACAGGTTGCTACTGA+TGG | 0.513998 | 1_3:+24475673 | Msa0111040:CDS |
| ATGTAGCAAGTTCGGCTGAC+GGG | 0.514478 | 1_3:+24475476 | Msa0111040:CDS |
| CCATCGGTGGCAATTTGTCC+TGG | 0.516349 | 1_3:-24478208 | None:intergenic |
| AGGTTCACAAATTGTTGGAA+AGG | 0.517920 | 1_3:+24475441 | Msa0111040:CDS |
| AATCCTATTGGTGTAGCAAA+GGG | 0.519077 | 1_3:-24477728 | None:intergenic |
| ACGTTAGGACCTGATGGACT+TGG | 0.520993 | 1_3:+24475361 | Msa0111040:CDS |
| AAGTAACCCAACGGCTCGAC+CGG | 0.524249 | 1_3:+24477667 | Msa0111040:CDS |
| GCCAGTTCCTAATGGGATAC+CGG | 0.525881 | 1_3:-24477819 | None:intergenic |
| ATTGTTGCTGTTTGGTGCAA+AGG | 0.526412 | 1_3:-24477855 | None:intergenic |
| CCATCAGTAGCAACCTGTCC+AGG | 0.527354 | 1_3:-24475673 | None:intergenic |
| TCGCGATTATCGGTTGTAGG+AGG | 0.528452 | 1_3:+24475595 | Msa0111040:CDS |
| GAATCCAACTGGGGTTGCAA+AGG | 0.532298 | 1_3:-24475188 | None:intergenic |
| AGATGGCAGCAGACAGATGA+TGG | 0.537603 | 1_3:+24478027 | Msa0111040:CDS |
| CAGTTAGGACCTGATGGACT+TGG | 0.539311 | 1_3:+24477896 | Msa0111040:CDS |
| ACAATTTGTGAACCTAACTC+TGG | 0.539499 | 1_3:-24475433 | None:intergenic |
| ATGTCGCGATTATCGGTTGT+AGG | 0.540679 | 1_3:+24475592 | Msa0111040:CDS |
| GTATATGTTGCCGAGCAAAC+CGG | 0.541501 | 1_3:-24475152 | None:intergenic |
| TTCATGCATGACATTCTTGG+TGG | 0.543393 | 1_3:+24475103 | Msa0111040:CDS |
| CTGAGACCTCTTATTCCACC+TGG | 0.543896 | 1_3:+24475655 | Msa0111040:CDS |
| CAGGTGCAGTTAGGACCTGA+TGG | 0.543932 | 1_3:+24477890 | Msa0111040:CDS |
| AATCCAACTGGGGTTGCAAA+GGG | 0.544346 | 1_3:-24475187 | None:intergenic |
| AATGATTGGTTCCTTTCCTG+TGG | 0.544898 | 1_3:-24475074 | None:intergenic |
| GGGATTGGCATACTATCACT+TGG | 0.545050 | 1_3:-24475217 | None:intergenic |
| TTGCCGAGCAAACCGGTCAC+TGG | 0.546279 | 1_3:-24475145 | None:intergenic |
| GGAAAGTTCAAGAATGCAAG+GGG | 0.548640 | 1_3:+24478157 | Msa0111040:CDS |
| CGCGATTATCGGTTGTAGGA+GGG | 0.549189 | 1_3:+24475596 | Msa0111040:CDS |
| GTACCCTTTGCAACCCCAGT+TGG | 0.549320 | 1_3:+24475184 | Msa0111040:CDS |
| TTGGTGTAGCAAAGGGCACT+TGG | 0.549569 | 1_3:-24477721 | None:intergenic |
| TTCATGCATGACATTCTTGG+TGG | 0.552092 | 1_3:+24477644 | Msa0111040:CDS |
| TTCACAGCCTTGTTTGAAGG+AGG | 0.552103 | 1_3:+24478052 | Msa0111040:CDS |
| GTTGACCCTATTGCAGCCAC+AGG | 0.552753 | 1_3:+24477599 | Msa0111040:CDS |
| AACGCCATTGACAGTGGGAA+TGG | 0.553395 | 1_3:-24477795 | None:intergenic |
| GAAAGCTCAAGGTGTTTATG+TGG | 0.553581 | 1_3:+24477994 | Msa0111040:CDS |
| AAATCCTATTGGTGTAGCAA+AGG | 0.554896 | 1_3:-24477729 | None:intergenic |
| CAACAATCAAAACAATGCTC+AGG | 0.557905 | 1_3:+24477871 | Msa0111040:CDS |
| CAGCAATGTCTCCGCACCAT+CGG | 0.561377 | 1_3:-24478224 | None:intergenic |
| TCCAATTGCAGCCACAGGAA+AGG | 0.562874 | 1_3:+24475063 | Msa0111040:CDS |
| TGACGGGAGTAGACAGATGA+TGG | 0.563922 | 1_3:+24475492 | Msa0111040:CDS |
| CAGGAAAGTTCAAGAATGCA+AGG | 0.567749 | 1_3:+24478155 | Msa0111040:CDS |
| ATTGATCCAATTGCAGCCAC+AGG | 0.569919 | 1_3:+24475058 | Msa0111040:CDS |
| CGGTGGCAATTTGTCCTGGT+GGG | 0.571743 | 1_3:-24478204 | None:intergenic |
| TCGGTGGCAATTTGTCCTGG+TGG | 0.573742 | 1_3:-24478205 | None:intergenic |
| TCACAGCCTTGTTTGAAGGA+GGG | 0.575570 | 1_3:+24478053 | Msa0111040:CDS |
| CAAATGGTTGGGAAAGCTCA+AGG | 0.578447 | 1_3:+24477983 | Msa0111040:CDS |
| CCAGTAACACCATTAACAGT+AGG | 0.579036 | 1_3:-24475259 | None:intergenic |
| CAGTTAACGTTAGGACCTGA+TGG | 0.580607 | 1_3:+24475355 | Msa0111040:CDS |
| AAATTGTTGGAAAGGGTCAG+GGG | 0.581072 | 1_3:+24475449 | Msa0111040:CDS |
| TATCCCATTAGGAACTGGCT+TGG | 0.584448 | 1_3:+24477823 | Msa0111040:CDS |
| GTCGCGATTATCAGTAATAG+GGG | 0.586398 | 1_3:+24478129 | Msa0111040:CDS |
| GATTTAACACTCCACAAGGT+GGG | 0.587292 | 1_3:+24477747 | Msa0111040:CDS |
| AATGATTGGTTCTTTCCCTG+TGG | 0.589744 | 1_3:-24477615 | None:intergenic |
| TATGTAGCAAGTTCGGCTGA+CGG | 0.590795 | 1_3:+24475475 | Msa0111040:CDS |
| CTGAGACCTCTTATCCCACC+AGG | 0.596655 | 1_3:+24478190 | Msa0111040:CDS |
| TATCGGTTGTAGGAGGGACG+GGG | 0.603964 | 1_3:+24475602 | Msa0111040:CDS |
| CCAACGGCTCGACCAGTGAC+CGG | 0.606503 | 1_3:+24475133 | Msa0111040:CDS |
| ATATTCCCCTCCTTCAAACA+AGG | 0.608813 | 1_3:-24478059 | None:intergenic |
| CCGGTAACGCCATTGACAGT+GGG | 0.609739 | 1_3:-24477800 | None:intergenic |
| CAATGTCTCCGCACCATCGG+TGG | 0.611187 | 1_3:-24478221 | None:intergenic |
| TATGTGGCAAGTTCAGCAGA+TGG | 0.613929 | 1_3:+24478010 | Msa0111040:CDS |
| CCAGGACAAATTGCCACCGA+TGG | 0.614361 | 1_3:+24478208 | Msa0111040:CDS |
| ACCGGTAACGCCATTGACAG+TGG | 0.618135 | 1_3:-24477801 | None:intergenic |
| TTGGAATGTTGAATCCAACT+GGG | 0.618283 | 1_3:-24475198 | None:intergenic |
| ACAAATTGCCACCGATGGTG+CGG | 0.619112 | 1_3:+24478213 | Msa0111040:CDS |
| ATTATCGGTTGTAGGAGGGA+CGG | 0.632538 | 1_3:+24475600 | Msa0111040:CDS |
| AAAGCAACCAACATTGCCAA+AGG | 0.640776 | 1_3:-24477548 | None:intergenic |
| AGGAAAGTTCAAGAATGCAA+GGG | 0.644422 | 1_3:+24478156 | Msa0111040:CDS |
| GGGATTGGAATCCCACCTTG+TGG | 0.644979 | 1_3:-24477758 | None:intergenic |
| TCTTGGTGGCAGTAACCCAA+CGG | 0.656099 | 1_3:+24475117 | Msa0111040:CDS |
| TCAGTAGCAACCTGTCCAGG+TGG | 0.657359 | 1_3:-24475670 | None:intergenic |
| AATTGTTGGAAAGGGTCAGG+GGG | 0.661911 | 1_3:+24475450 | Msa0111040:CDS |
| GGATTTAACACTCCACAAGG+TGG | 0.665641 | 1_3:+24477746 | Msa0111040:CDS |
| TTGACCCTATTGCAGCCACA+GGG | 0.674527 | 1_3:+24477600 | Msa0111040:CDS |
| TTGTTGGGCAACATATACAG+TGG | 0.686502 | 1_3:+24477698 | Msa0111040:CDS |
| ATGGTGCTGAGACTTTGTTG+AGG | 0.693982 | 1_3:+24475692 | Msa0111040:CDS |
| TATTACTGATAATCGCGACA+TGG | 0.699334 | 1_3:-24478125 | None:intergenic |
| ATAGGATTTAACACTCCACA+AGG | 0.710387 | 1_3:+24477743 | Msa0111040:CDS |
| TCTTGGTGGAAGTAACCCAA+CGG | 0.712556 | 1_3:+24477658 | Msa0111040:CDS |
| TCGCGATTATCAGTAATAGG+GGG | 0.718514 | 1_3:+24478130 | Msa0111040:CDS |
| TTGCTCGGCAACATATACAG+TGG | 0.727097 | 1_3:+24475157 | Msa0111040:CDS |
| TGGAATGTTGAATCCAACTG+GGG | 0.746650 | 1_3:-24475197 | None:intergenic |
| ATGGTGCGGAGACATTGCTG+AGG | 0.778387 | 1_3:+24478227 | Msa0111040:CDS |
| GAAAGTTCAAGAATGCAAGG+GGG | 0.779865 | 1_3:+24478158 | Msa0111040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGCAATAAATATTTAAT+TGG | - | chr1_3:24476126-24476145 | None:intergenic | 10.0% |
| !! | TTCTATTAATAGTTTAAATT+TGG | + | chr1_3:24476575-24476594 | Msa0111040:intron | 10.0% |
| !! | TCTATTAATAGTTTAAATTT+GGG | + | chr1_3:24476576-24476595 | Msa0111040:intron | 10.0% |
| !! | TTAAAATTACAAAAAATAAC+TGG | + | chr1_3:24476613-24476632 | Msa0111040:intron | 10.0% |
| !! | AAAATTAACAACTAAATACA+AGG | - | chr1_3:24475888-24475907 | None:intergenic | 15.0% |
| !! | AAATGGATAAATGAATAAAA+TGG | + | chr1_3:24476003-24476022 | Msa0111040:intron | 15.0% |
| !!! | AAGATAAAATACTTTTTCTT+TGG | + | chr1_3:24476277-24476296 | Msa0111040:intron | 15.0% |
| !!! | AGATAAAATACTTTTTCTTT+GGG | + | chr1_3:24476278-24476297 | Msa0111040:intron | 15.0% |
| !!! | ATTTTTCTATTCCTTTTAAA+TGG | - | chr1_3:24476824-24476843 | None:intergenic | 15.0% |
| !! | AAATAAGTAAGAAAACATAA+AGG | + | chr1_3:24476840-24476859 | Msa0111040:intron | 15.0% |
| !!! | TGATTGTTATTGTTATTGTT+TGG | - | chr1_3:24475325-24475344 | None:intergenic | 20.0% |
| !!! | TTTTATGGTTTGTATAAGAT+TGG | + | chr1_3:24475562-24475581 | Msa0111040:intron | 20.0% |
| !! | GATGATTATTATTATCAGTT+TGG | + | chr1_3:24475801-24475820 | Msa0111040:intron | 20.0% |
| !!! | TAGTTGTTAATTTTGCAATA+TGG | + | chr1_3:24475894-24475913 | Msa0111040:intron | 20.0% |
| !!! | AGTTGTTAATTTTGCAATAT+GGG | + | chr1_3:24475895-24475914 | Msa0111040:intron | 20.0% |
| !! | ACAAAATTATTCTTCAATAC+AGG | + | chr1_3:24476217-24476236 | Msa0111040:intron | 20.0% |
| !! | TTAAAATTTCGTGACATATT+TGG | + | chr1_3:24476646-24476665 | Msa0111040:intron | 20.0% |
| !! | TAGAATTTGATCCATTTAAA+AGG | + | chr1_3:24476810-24476829 | Msa0111040:intron | 20.0% |
| !!! | AAGTAATTTTACAGAGAATT+TGG | + | chr1_3:24476890-24476909 | Msa0111040:intron | 20.0% |
| !!! | TGGTTGAGTTTTTTTTTTTT+AGG | + | chr1_3:24476910-24476929 | Msa0111040:intron | 20.0% |
| !!! | GGTTGAGTTTTTTTTTTTTA+GGG | + | chr1_3:24476911-24476930 | Msa0111040:intron | 20.0% |
| !! | GATAAACAATTAATGATGTT+TGG | + | chr1_3:24476987-24477006 | Msa0111040:intron | 20.0% |
| !! | ATTACGAAATCATTTAGAAA+AGG | + | chr1_3:24477102-24477121 | Msa0111040:intron | 20.0% |
| !! | TTACGAAATCATTTAGAAAA+GGG | + | chr1_3:24477103-24477122 | Msa0111040:intron | 20.0% |
| !! | GAATATTATATAACTCAATG+AGG | - | chr1_3:24477188-24477207 | None:intergenic | 20.0% |
| !!! | AGAAATATTGACTACAATTT+TGG | + | chr1_3:24477310-24477329 | Msa0111040:intron | 20.0% |
| !!! | TTTTATGGTTTGTATAAGAT+AGG | + | chr1_3:24475562-24475581 | Msa0111040:intron | 20.0% |
| !! | GGTGATAGTTTGAATTTTTA+TGG | + | chr1_3:24475547-24475566 | Msa0111040:intron | 25.0% |
| !!! | TTAGTTTGTTTGCATGTATT+TGG | + | chr1_3:24475836-24475855 | Msa0111040:intron | 25.0% |
| !! | TGATGTATAAAGCACTAATA+CGG | + | chr1_3:24475968-24475987 | Msa0111040:intron | 25.0% |
| !! | ATGTTTTCAATTTCTTGAAC+TGG | - | chr1_3:24476249-24476268 | None:intergenic | 25.0% |
| !!! | AAGTATGCACTTTTTAACTT+AGG | - | chr1_3:24476479-24476498 | None:intergenic | 25.0% |
| !!! | TTTTTTTAGGGAAGAGAATT+TGG | + | chr1_3:24476923-24476942 | Msa0111040:intron | 25.0% |
| ! | AATTGTTTATCGTTGTCTTT+AGG | - | chr1_3:24476978-24476997 | None:intergenic | 25.0% |
| ! | TACGAAATCATTTAGAAAAG+GGG | + | chr1_3:24477104-24477123 | Msa0111040:intron | 25.0% |
| !! | TAGTCAATATTTCTGATTAG+TGG | - | chr1_3:24477304-24477323 | None:intergenic | 25.0% |
| ! | AGTCATGGTATTATATAAGA+GGG | - | chr1_3:24477418-24477437 | None:intergenic | 25.0% |
| ! | AAGTCATGGTATTATATAAG+AGG | - | chr1_3:24477419-24477438 | None:intergenic | 25.0% |
| !! | TGTGGTAATGAATATTTGTT+TGG | - | chr1_3:24477460-24477479 | None:intergenic | 25.0% |
| ! | TAGATACTAGTATTTCTTTG+TGG | - | chr1_3:24477478-24477497 | None:intergenic | 25.0% |
| ! | GTATCTATATCTGAAAAACT+TGG | + | chr1_3:24477491-24477510 | Msa0111040:intron | 25.0% |
| GATTAACACCATTTGCATTA+GGG | - | chr1_3:24475240-24475259 | None:intergenic | 30.0% | |
| AACAATGTTCAGTTAACGTT+AGG | + | chr1_3:24475346-24475365 | Msa0111040:CDS | 30.0% | |
| !! | GTTTTTACAGCACTTTTTGA+AGG | + | chr1_3:24475514-24475533 | Msa0111040:intron | 30.0% |
| GGAAGTTTAAGTATGCTAAA+GGG | + | chr1_3:24475623-24475642 | Msa0111040:CDS | 30.0% | |
| ! | AATTTTGCAATATGGGAACT+TGG | + | chr1_3:24475902-24475921 | Msa0111040:intron | 30.0% |
| !! | TGATGATTTGTTATGTAGCA+CGG | - | chr1_3:24476094-24476113 | None:intergenic | 30.0% |
| TCGTTAAACTACATCACTTT+AGG | + | chr1_3:24476355-24476374 | Msa0111040:intron | 30.0% | |
| ACTTAGGTGAAAATGACATT+GGG | - | chr1_3:24476463-24476482 | None:intergenic | 30.0% | |
| AACTTAGGTGAAAATGACAT+TGG | - | chr1_3:24476464-24476483 | None:intergenic | 30.0% | |
| !! | AATAGTTTGTTTGATCTTCC+TGG | + | chr1_3:24476532-24476551 | Msa0111040:intron | 30.0% |
| !! | AGTTTAAATTTGGGTTTTCG+TGG | + | chr1_3:24476585-24476604 | Msa0111040:intron | 30.0% |
| ATTGATGCATATAGTAGAGT+GGG | + | chr1_3:24476710-24476729 | Msa0111040:intron | 30.0% | |
| GAGTTATGACTACAGATAAA+TGG | + | chr1_3:24476948-24476967 | Msa0111040:intron | 30.0% | |
| !!! | TAGCTATTGACTTGAGATTT+TGG | + | chr1_3:24477038-24477057 | Msa0111040:intron | 30.0% |
| CTGAAGTTGTTGAAATTAAC+AGG | - | chr1_3:24477354-24477373 | None:intergenic | 30.0% | |
| TGAATATTTGTTTGGATGAG+TGG | - | chr1_3:24477452-24477471 | None:intergenic | 30.0% | |
| TGAAAAACTTGGAAACAAGA+TGG | + | chr1_3:24477502-24477521 | Msa0111040:intron | 30.0% | |
| ATTACTAGCTATATCTCCTT+TGG | + | chr1_3:24477532-24477551 | Msa0111040:CDS | 30.0% | |
| !!! | TTGTTTTGATTGTTGCTGTT+TGG | - | chr1_3:24477866-24477885 | None:intergenic | 30.0% |
| TGCATGAACAACTCAATGAT+TGG | - | chr1_3:24475091-24475110 | None:intergenic | 35.0% | |
| TTGTTCATGCATGACATTCT+TGG | + | chr1_3:24475100-24475119 | Msa0111040:CDS | 35.0% | |
| TTGGAATGTTGAATCCAACT+GGG | - | chr1_3:24475201-24475220 | None:intergenic | 35.0% | |
| GGATTAACACCATTTGCATT+AGG | - | chr1_3:24475241-24475260 | None:intergenic | 35.0% | |
| GGTGTTAATCCTACTGTTAA+TGG | + | chr1_3:24475250-24475269 | Msa0111040:CDS | 35.0% | |
| TTAACATCTCAACCAGAGTT+AGG | + | chr1_3:24475421-24475440 | Msa0111040:CDS | 35.0% | |
| ACAATTTGTGAACCTAACTC+TGG | - | chr1_3:24475436-24475455 | None:intergenic | 35.0% | |
| GAGTTAGGTTCACAAATTGT+TGG | + | chr1_3:24475436-24475455 | Msa0111040:CDS | 35.0% | |
| AGGTTCACAAATTGTTGGAA+AGG | + | chr1_3:24475441-24475460 | Msa0111040:CDS | 35.0% | |
| GGTTCACAAATTGTTGGAAA+GGG | + | chr1_3:24475442-24475461 | Msa0111040:CDS | 35.0% | |
| !! | TTTACAGCACTTTTTGAAGG+AGG | + | chr1_3:24475517-24475536 | Msa0111040:intron | 35.0% |
| !! | TTACAGCACTTTTTGAAGGA+GGG | + | chr1_3:24475518-24475537 | Msa0111040:intron | 35.0% |
| AAGTACTATGTCGCGATTAT+CGG | + | chr1_3:24475585-24475604 | Msa0111040:CDS | 35.0% | |
| GGGAAGTTTAAGTATGCTAA+AGG | + | chr1_3:24475622-24475641 | Msa0111040:CDS | 35.0% | |
| !! | GAAGTACTGATGAGTATTGT+TGG | + | chr1_3:24475729-24475748 | Msa0111040:intron | 35.0% |
| GTATTGTTGGTGTATTGTGA+AGG | + | chr1_3:24475742-24475761 | Msa0111040:intron | 35.0% | |
| ! | TACGGACTTCACTTTGAAAA+TGG | + | chr1_3:24475986-24476005 | Msa0111040:intron | 35.0% |
| ! | CTTTTTCTTTGGGTGAAAGA+TGG | + | chr1_3:24476288-24476307 | Msa0111040:intron | 35.0% |
| ! | ATGCTACTTGCATTGAATAG+TGG | - | chr1_3:24476325-24476344 | None:intergenic | 35.0% |
| CTTAGGTGAAAATGACATTG+GGG | - | chr1_3:24476462-24476481 | None:intergenic | 35.0% | |
| CATTGATGCATATAGTAGAG+TGG | + | chr1_3:24476709-24476728 | Msa0111040:intron | 35.0% | |
| TTGATGCATATAGTAGAGTG+GGG | + | chr1_3:24476711-24476730 | Msa0111040:intron | 35.0% | |
| AATCTCAAGTCAATAGCTAG+TGG | - | chr1_3:24477037-24477056 | None:intergenic | 35.0% | |
| TATATCTCCTTTGGCAATGT+TGG | + | chr1_3:24477541-24477560 | Msa0111040:CDS | 35.0% | |
| AATCCTATTGGTGTAGCAAA+GGG | - | chr1_3:24477731-24477750 | None:intergenic | 35.0% | |
| AAATCCTATTGGTGTAGCAA+AGG | - | chr1_3:24477732-24477751 | None:intergenic | 35.0% | |
| ! | TGTGGAGTGTTAAATCCTAT+TGG | - | chr1_3:24477743-24477762 | None:intergenic | 35.0% |
| ATAGGATTTAACACTCCACA+AGG | + | chr1_3:24477743-24477762 | Msa0111040:CDS | 35.0% | |
| ATTCCAATCCCTAATGCAAA+TGG | + | chr1_3:24477770-24477789 | Msa0111040:CDS | 35.0% | |
| CAACAATCAAAACAATGCTC+AGG | + | chr1_3:24477871-24477890 | Msa0111040:CDS | 35.0% | |
| ACTAACATCTCAACCTGAAT+TGG | + | chr1_3:24477955-24477974 | Msa0111040:CDS | 35.0% | |
| CTAACATCTCAACCTGAATT+GGG | + | chr1_3:24477956-24477975 | Msa0111040:CDS | 35.0% | |
| AATTGGGTTCTCAAATGGTT+GGG | + | chr1_3:24477972-24477991 | Msa0111040:CDS | 35.0% | |
| ! | GGAGATAGCTTGAACTTTTA+TGG | + | chr1_3:24478082-24478101 | Msa0111040:CDS | 35.0% |
| TATTACTGATAATCGCGACA+TGG | - | chr1_3:24478128-24478147 | None:intergenic | 35.0% | |
| ATGTCGCGATTATCAGTAAT+AGG | + | chr1_3:24478127-24478146 | Msa0111040:CDS | 35.0% | |
| TGTCGCGATTATCAGTAATA+GGG | + | chr1_3:24478128-24478147 | Msa0111040:CDS | 35.0% | |
| AGGAAAGTTCAAGAATGCAA+GGG | + | chr1_3:24478156-24478175 | Msa0111040:CDS | 35.0% | |
| ! | AATGATTGGTTCCTTTCCTG+TGG | - | chr1_3:24475077-24475096 | None:intergenic | 40.0% |
| TTCATGCATGACATTCTTGG+TGG | + | chr1_3:24475103-24475122 | Msa0111040:CDS | 40.0% | |
| TGGAATGTTGAATCCAACTG+GGG | - | chr1_3:24475200-24475219 | None:intergenic | 40.0% | |
| CTTGGAATGTTGAATCCAAC+TGG | - | chr1_3:24475202-24475221 | None:intergenic | 40.0% | |
| ATGCCAATCCCTAATGCAAA+TGG | + | chr1_3:24475229-24475248 | Msa0111040:CDS | 40.0% | |
| ACACCATTTGCATTAGGGAT+TGG | - | chr1_3:24475235-24475254 | None:intergenic | 40.0% | |
| CCAGTAACACCATTAACAGT+AGG | - | chr1_3:24475262-24475281 | None:intergenic | 40.0% | |
| !! | CCTACTGTTAATGGTGTTAC+TGG | + | chr1_3:24475259-24475278 | Msa0111040:CDS | 40.0% |
| CAGCTAAACCAGTTCCTAAA+GGG | - | chr1_3:24475288-24475307 | None:intergenic | 40.0% | |
| AATCCTAATCCAAGTCCATC+AGG | - | chr1_3:24475373-24475392 | None:intergenic | 40.0% | |
| ! | GATGGACTTGGATTAGGATT+TGG | + | chr1_3:24475373-24475392 | Msa0111040:CDS | 40.0% |
| ACAAATTGTTGGAAAGGGTC+AGG | + | chr1_3:24475447-24475466 | Msa0111040:CDS | 40.0% | |
| CAAATTGTTGGAAAGGGTCA+GGG | + | chr1_3:24475448-24475467 | Msa0111040:CDS | 40.0% | |
| AAATTGTTGGAAAGGGTCAG+GGG | + | chr1_3:24475449-24475468 | Msa0111040:CDS | 40.0% | |
| !! | TACAGCACTTTTTGAAGGAG+GGG | + | chr1_3:24475519-24475538 | Msa0111040:intron | 40.0% |
| TCAGCAGTCGAAGAGATAAA+GGG | - | chr1_3:24476187-24476206 | None:intergenic | 40.0% | |
| TTCAGCAGTCGAAGAGATAA+AGG | - | chr1_3:24476188-24476207 | None:intergenic | 40.0% | |
| TTCTTTGGGTGAAAGATGGT+TGG | + | chr1_3:24476292-24476311 | Msa0111040:intron | 40.0% | |
| CTACTTGCATTGAATAGTGG+AGG | - | chr1_3:24476322-24476341 | None:intergenic | 40.0% | |
| !! | ACTTTAGGACAATTCAGCCA+AGG | + | chr1_3:24476370-24476389 | Msa0111040:intron | 40.0% |
| TTTGATCTTCCTGGCAAGTA+TGG | + | chr1_3:24476541-24476560 | Msa0111040:intron | 40.0% | |
| TAGAAACTTCCATACTTGCC+AGG | - | chr1_3:24476553-24476572 | None:intergenic | 40.0% | |
| ! | GTGGATTGAAATGCAAGTCA+TGG | - | chr1_3:24477433-24477452 | None:intergenic | 40.0% |
| AAAGCAACCAACATTGCCAA+AGG | - | chr1_3:24477551-24477570 | None:intergenic | 40.0% | |
| ! | AATGATTGGTTCTTTCCCTG+TGG | - | chr1_3:24477618-24477637 | None:intergenic | 40.0% |
| TGCATGAACAGCTCAATGAT+TGG | - | chr1_3:24477632-24477651 | None:intergenic | 40.0% | |
| CTGTTCATGCATGACATTCT+TGG | + | chr1_3:24477641-24477660 | Msa0111040:CDS | 40.0% | |
| TTCATGCATGACATTCTTGG+TGG | + | chr1_3:24475103-24475122 | Msa0111040:CDS | 40.0% | |
| TTGTTGGGCAACATATACAG+TGG | + | chr1_3:24477698-24477717 | Msa0111040:CDS | 40.0% | |
| GATTTAACACTCCACAAGGT+GGG | + | chr1_3:24477747-24477766 | Msa0111040:CDS | 40.0% | |
| GAATGGCACCATTTGCATTA+GGG | - | chr1_3:24477781-24477800 | None:intergenic | 40.0% | |
| !! | ATTGTTGCTGTTTGGTGCAA+AGG | - | chr1_3:24477858-24477877 | None:intergenic | 40.0% |
| ACCTGAATTGGGTTCTCAAA+TGG | + | chr1_3:24477967-24477986 | Msa0111040:CDS | 40.0% | |
| ACCATTTGAGAACCCAATTC+AGG | - | chr1_3:24477971-24477990 | None:intergenic | 40.0% | |
| GAATTGGGTTCTCAAATGGT+TGG | + | chr1_3:24477971-24477990 | Msa0111040:CDS | 40.0% | |
| ! | GAAAGCTCAAGGTGTTTATG+TGG | + | chr1_3:24477994-24478013 | Msa0111040:CDS | 40.0% |
| !! | GTATTCACAGCCTTGTTTGA+AGG | + | chr1_3:24478049-24478068 | Msa0111040:CDS | 40.0% |
| ATATTCCCCTCCTTCAAACA+AGG | - | chr1_3:24478062-24478081 | None:intergenic | 40.0% | |
| TTGTTTGAAGGAGGGGAATA+TGG | + | chr1_3:24478061-24478080 | Msa0111040:CDS | 40.0% | |
| GTCGCGATTATCAGTAATAG+GGG | + | chr1_3:24478129-24478148 | Msa0111040:CDS | 40.0% | |
| TCGCGATTATCAGTAATAGG+GGG | + | chr1_3:24478130-24478149 | Msa0111040:CDS | 40.0% | |
| ! | TTATCAGTAATAGGGGGTAC+AGG | + | chr1_3:24478136-24478155 | Msa0111040:CDS | 40.0% |
| CAGGAAAGTTCAAGAATGCA+AGG | + | chr1_3:24478155-24478174 | Msa0111040:CDS | 40.0% | |
| GGAAAGTTCAAGAATGCAAG+GGG | + | chr1_3:24478157-24478176 | Msa0111040:CDS | 40.0% | |
| GAAAGTTCAAGAATGCAAGG+GGG | + | chr1_3:24478158-24478177 | Msa0111040:CDS | 40.0% | |
| ATTGATCCAATTGCAGCCAC+AGG | + | chr1_3:24475058-24475077 | Msa0111040:CDS | 45.0% | |
| GTATATGTTGCCGAGCAAAC+CGG | - | chr1_3:24475155-24475174 | None:intergenic | 45.0% | |
| TTGCTCGGCAACATATACAG+TGG | + | chr1_3:24475157-24475176 | Msa0111040:CDS | 45.0% | |
| AATCCAACTGGGGTTGCAAA+GGG | - | chr1_3:24475190-24475209 | None:intergenic | 45.0% | |
| ! | GGGATTGGCATACTATCACT+TGG | - | chr1_3:24475220-24475239 | None:intergenic | 45.0% |
| !! | GGTGTTACTGGTATCCCTTT+AGG | + | chr1_3:24475271-24475290 | Msa0111040:intron | 45.0% |
| ! | ACTGGTATCCCTTTAGGAAC+TGG | + | chr1_3:24475277-24475296 | Msa0111040:intron | 45.0% |
| CCAGCTAAACCAGTTCCTAA+AGG | - | chr1_3:24475289-24475308 | None:intergenic | 45.0% | |
| ! | CCTTTAGGAACTGGTTTAGC+TGG | + | chr1_3:24475286-24475305 | Msa0111040:intron | 45.0% |
| CAGTTAACGTTAGGACCTGA+TGG | + | chr1_3:24475355-24475374 | Msa0111040:CDS | 45.0% | |
| AATTGTTGGAAAGGGTCAGG+GGG | + | chr1_3:24475450-24475469 | Msa0111040:CDS | 45.0% | |
| TATGTAGCAAGTTCGGCTGA+CGG | + | chr1_3:24475475-24475494 | Msa0111040:CDS | 45.0% | |
| !! | CTTTTTGAAGGAGGGGAGTA+TGG | + | chr1_3:24475526-24475545 | Msa0111040:intron | 45.0% |
| ! | ATGTCGCGATTATCGGTTGT+AGG | + | chr1_3:24475592-24475611 | Msa0111040:CDS | 45.0% |
| ! | ATTATCGGTTGTAGGAGGGA+CGG | + | chr1_3:24475600-24475619 | Msa0111040:CDS | 45.0% |
| ! | ATGGTGCTGAGACTTTGTTG+AGG | + | chr1_3:24475692-24475711 | Msa0111040:CDS | 45.0% |
| ! | TGAAGGTGTGTGAAAGCATG+TGG | + | chr1_3:24475759-24475778 | Msa0111040:intron | 45.0% |
| ! | GAAGGTGTGTGAAAGCATGT+GGG | + | chr1_3:24475760-24475779 | Msa0111040:intron | 45.0% |
| GCAATATGGGAACTTGGCTT+TGG | + | chr1_3:24475908-24475927 | Msa0111040:intron | 45.0% | |
| ATGCATATAGTAGAGTGGGG+TGG | + | chr1_3:24476714-24476733 | Msa0111040:intron | 45.0% | |
| TGCATATAGTAGAGTGGGGT+GGG | + | chr1_3:24476715-24476734 | Msa0111040:intron | 45.0% | |
| TGACAAGTCAGCAACATGAG+AGG | - | chr1_3:24477083-24477102 | None:intergenic | 45.0% | |
| GTGGCGTTGTTGAGATGTAA+TGG | - | chr1_3:24477285-24477304 | None:intergenic | 45.0% | |
| ! | GAATGAAGAGTGTGTTGGAG+TGG | - | chr1_3:24477396-24477415 | None:intergenic | 45.0% |
| ! | AGAGGGAATGAAGAGTGTGT+TGG | - | chr1_3:24477401-24477420 | None:intergenic | 45.0% |
| TCTTGGTGGAAGTAACCCAA+CGG | + | chr1_3:24477658-24477677 | Msa0111040:CDS | 45.0% | |
| TTGCCCAACAAACCAGTTAC+CGG | - | chr1_3:24477689-24477708 | None:intergenic | 45.0% | |
| GGATTTAACACTCCACAAGG+TGG | + | chr1_3:24477746-24477765 | Msa0111040:CDS | 45.0% | |
| GCACCATTTGCATTAGGGAT+TGG | - | chr1_3:24477776-24477795 | None:intergenic | 45.0% | |
| GGAATGGCACCATTTGCATT+AGG | - | chr1_3:24477782-24477801 | None:intergenic | 45.0% | |
| TATCCCATTAGGAACTGGCT+TGG | + | chr1_3:24477823-24477842 | Msa0111040:CDS | 45.0% | |
| AACAATGCTCAGGTGCAGTT+AGG | + | chr1_3:24477881-24477900 | Msa0111040:CDS | 45.0% | |
| AATCCTAGTCCAAGTCCATC+AGG | - | chr1_3:24477908-24477927 | None:intergenic | 45.0% | |
| ! | GATGGACTTGGACTAGGATT+TGG | + | chr1_3:24477908-24477927 | Msa0111040:CDS | 45.0% |
| CAAATGGTTGGGAAAGCTCA+AGG | + | chr1_3:24477983-24478002 | Msa0111040:CDS | 45.0% | |
| TATGTGGCAAGTTCAGCAGA+TGG | + | chr1_3:24478010-24478029 | Msa0111040:CDS | 45.0% | |
| !! | TTCACAGCCTTGTTTGAAGG+AGG | + | chr1_3:24478052-24478071 | Msa0111040:CDS | 45.0% |
| !! | TCACAGCCTTGTTTGAAGGA+GGG | + | chr1_3:24478053-24478072 | Msa0111040:CDS | 45.0% |
| ATTTGTCCTGGTGGGATAAG+AGG | - | chr1_3:24478199-24478218 | None:intergenic | 45.0% | |
| !!! | ATATTTTAAAAAAATAGATT+TGG | + | chr1_3:24477229-24477248 | Msa0111040:intron | 5.0% |
| TCCAATTGCAGCCACAGGAA+AGG | + | chr1_3:24475063-24475082 | Msa0111040:CDS | 50.0% | |
| TCCTTTCCTGTGGCTGCAAT+TGG | - | chr1_3:24475067-24475086 | None:intergenic | 50.0% | |
| ! | TCTTGGTGGCAGTAACCCAA+CGG | + | chr1_3:24475117-24475136 | Msa0111040:CDS | 50.0% |
| GAATCCAACTGGGGTTGCAA+AGG | - | chr1_3:24475191-24475210 | None:intergenic | 50.0% | |
| !! | ACGTTAGGACCTGATGGACT+TGG | + | chr1_3:24475361-24475380 | Msa0111040:CDS | 50.0% |
| !! | GGACCTGATGGACTTGGATT+AGG | + | chr1_3:24475367-24475386 | Msa0111040:CDS | 50.0% |
| ! | GGGGGTGTATGTAGCAAGTT+CGG | + | chr1_3:24475468-24475487 | Msa0111040:CDS | 50.0% |
| ATGTAGCAAGTTCGGCTGAC+GGG | + | chr1_3:24475476-24475495 | Msa0111040:CDS | 50.0% | |
| TGACGGGAGTAGACAGATGA+TGG | + | chr1_3:24475492-24475511 | Msa0111040:CDS | 50.0% | |
| ! | TCGCGATTATCGGTTGTAGG+AGG | + | chr1_3:24475595-24475614 | Msa0111040:CDS | 50.0% |
| ! | CGCGATTATCGGTTGTAGGA+GGG | + | chr1_3:24475596-24475615 | Msa0111040:CDS | 50.0% |
| ! | TTATCGGTTGTAGGAGGGAC+GGG | + | chr1_3:24475601-24475620 | Msa0111040:CDS | 50.0% |
| CTGAGACCTCTTATTCCACC+TGG | + | chr1_3:24475655-24475674 | Msa0111040:CDS | 50.0% | |
| ACCTCTTATTCCACCTGGAC+AGG | + | chr1_3:24475660-24475679 | Msa0111040:CDS | 50.0% | |
| ACCTGTCCAGGTGGAATAAG+AGG | - | chr1_3:24475664-24475683 | None:intergenic | 50.0% | |
| GGACAATTCAGCCAAGGCAT+AGG | + | chr1_3:24476376-24476395 | Msa0111040:intron | 50.0% | |
| GCGATCTTAGTCCTATGCCT+TGG | - | chr1_3:24476390-24476409 | None:intergenic | 50.0% | |
| GCATATAGTAGAGTGGGGTG+GGG | + | chr1_3:24476716-24476735 | Msa0111040:intron | 50.0% | |
| GTTGGAGTGGTTGTGAGACA+TGG | - | chr1_3:24477383-24477402 | None:intergenic | 50.0% | |
| TTGACCCTATTGCAGCCACA+GGG | + | chr1_3:24477600-24477619 | Msa0111040:CDS | 50.0% | |
| CTTTCCCTGTGGCTGCAATA+GGG | - | chr1_3:24477607-24477626 | None:intergenic | 50.0% | |
| TCTTTCCCTGTGGCTGCAAT+AGG | - | chr1_3:24477608-24477627 | None:intergenic | 50.0% | |
| !! | TCGACCGGTAACTGGTTTGT+TGG | + | chr1_3:24477682-24477701 | Msa0111040:CDS | 50.0% |
| !! | CGACCGGTAACTGGTTTGTT+GGG | + | chr1_3:24477683-24477702 | Msa0111040:CDS | 50.0% |
| !! | TTGGTGTAGCAAAGGGCACT+TGG | - | chr1_3:24477724-24477743 | None:intergenic | 50.0% |
| GTGCCCTTTGCTACACCAAT+AGG | + | chr1_3:24477725-24477744 | Msa0111040:CDS | 50.0% | |
| AACGCCATTGACAGTGGGAA+TGG | - | chr1_3:24477798-24477817 | None:intergenic | 50.0% | |
| ACCGGTATCCCATTAGGAAC+TGG | + | chr1_3:24477818-24477837 | Msa0111040:CDS | 50.0% | |
| GCCAGTTCCTAATGGGATAC+CGG | - | chr1_3:24477822-24477841 | None:intergenic | 50.0% | |
| CAGCCAAGCCAGTTCCTAAT+GGG | - | chr1_3:24477829-24477848 | None:intergenic | 50.0% | |
| !! | CAGTTAGGACCTGATGGACT+TGG | + | chr1_3:24477896-24477915 | Msa0111040:CDS | 50.0% |
| AGATGGCAGCAGACAGATGA+TGG | + | chr1_3:24478027-24478046 | Msa0111040:CDS | 50.0% | |
| !! | CACAGCCTTGTTTGAAGGAG+GGG | + | chr1_3:24478054-24478073 | Msa0111040:CDS | 50.0% |
| ACAAATTGCCACCGATGGTG+CGG | + | chr1_3:24478213-24478232 | Msa0111040:CDS | 50.0% | |
| GTACCCTTTGCAACCCCAGT+TGG | + | chr1_3:24475184-24475203 | Msa0111040:CDS | 55.0% | |
| ! | TATCGGTTGTAGGAGGGACG+GGG | + | chr1_3:24475602-24475621 | Msa0111040:CDS | 55.0% |
| TCAGTAGCAACCTGTCCAGG+TGG | - | chr1_3:24475673-24475692 | None:intergenic | 55.0% | |
| CCATCAGTAGCAACCTGTCC+AGG | - | chr1_3:24475676-24475695 | None:intergenic | 55.0% | |
| CCTGGACAGGTTGCTACTGA+TGG | + | chr1_3:24475673-24475692 | Msa0111040:CDS | 55.0% | |
| TATAGTAGAGTGGGGTGGGG+TGG | + | chr1_3:24476719-24476738 | Msa0111040:intron | 55.0% | |
| GTTGACCCTATTGCAGCCAC+AGG | + | chr1_3:24477599-24477618 | Msa0111040:CDS | 55.0% | |
| AAGTAACCCAACGGCTCGAC+CGG | + | chr1_3:24477667-24477686 | Msa0111040:CDS | 55.0% | |
| GGGATTGGAATCCCACCTTG+TGG | - | chr1_3:24477761-24477780 | None:intergenic | 55.0% | |
| !! | GGTGCCATTCCCACTGTCAA+TGG | + | chr1_3:24477791-24477810 | Msa0111040:CDS | 55.0% |
| CCGGTAACGCCATTGACAGT+GGG | - | chr1_3:24477803-24477822 | None:intergenic | 55.0% | |
| CCCACTGTCAATGGCGTTAC+CGG | + | chr1_3:24477800-24477819 | Msa0111040:CDS | 55.0% | |
| ACCGGTAACGCCATTGACAG+TGG | - | chr1_3:24477804-24477823 | None:intergenic | 55.0% | |
| GGCGTTACCGGTATCCCATT+AGG | + | chr1_3:24477812-24477831 | Msa0111040:CDS | 55.0% | |
| CCAGCCAAGCCAGTTCCTAA+TGG | - | chr1_3:24477830-24477849 | None:intergenic | 55.0% | |
| !! | CCATTAGGAACTGGCTTGGC+TGG | + | chr1_3:24477827-24477846 | Msa0111040:CDS | 55.0% |
| CAGGTGCAGTTAGGACCTGA+TGG | + | chr1_3:24477890-24477909 | Msa0111040:CDS | 55.0% | |
| !! | GGACCTGATGGACTTGGACT+AGG | + | chr1_3:24477902-24477921 | Msa0111040:CDS | 55.0% |
| CTGAGACCTCTTATCCCACC+AGG | + | chr1_3:24478190-24478209 | Msa0111040:CDS | 55.0% | |
| CGGTGGCAATTTGTCCTGGT+GGG | - | chr1_3:24478207-24478226 | None:intergenic | 55.0% | |
| TCGGTGGCAATTTGTCCTGG+TGG | - | chr1_3:24478208-24478227 | None:intergenic | 55.0% | |
| CCATCGGTGGCAATTTGTCC+TGG | - | chr1_3:24478211-24478230 | None:intergenic | 55.0% | |
| CCAGGACAAATTGCCACCGA+TGG | + | chr1_3:24478208-24478227 | Msa0111040:CDS | 55.0% | |
| CAGCAATGTCTCCGCACCAT+CGG | - | chr1_3:24478227-24478246 | None:intergenic | 55.0% | |
| ATGGTGCGGAGACATTGCTG+AGG | + | chr1_3:24478227-24478246 | Msa0111040:CDS | 55.0% | |
| !! | CGACCAGTGACCGGTTTGCT+CGG | + | chr1_3:24475142-24475161 | Msa0111040:CDS | 60.0% |
| TTGCCGAGCAAACCGGTCAC+TGG | - | chr1_3:24475148-24475167 | None:intergenic | 60.0% | |
| GAGTGGGGTGGGGTGGAAAT+AGG | + | chr1_3:24476726-24476745 | Msa0111040:intron | 60.0% | |
| CAGTTACCGGTCGAGCCGTT+GGG | - | chr1_3:24477676-24477695 | None:intergenic | 60.0% | |
| CAATGTCTCCGCACCATCGG+TGG | - | chr1_3:24478224-24478243 | None:intergenic | 60.0% | |
| CGGTCACTGGTCGAGCCGTT+GGG | - | chr1_3:24475135-24475154 | None:intergenic | 65.0% | |
| CCAACGGCTCGACCAGTGAC+CGG | + | chr1_3:24475133-24475152 | Msa0111040:CDS | 65.0% | |
| CCAGTTACCGGTCGAGCCGT+TGG | - | chr1_3:24477677-24477696 | None:intergenic | 65.0% | |
| CCAACGGCTCGACCGGTAAC+TGG | + | chr1_3:24477674-24477693 | Msa0111040:CDS | 65.0% | |
| CCGGTCACTGGTCGAGCCGT+TGG | - | chr1_3:24475136-24475155 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 24475037 | 24478273 | 24475037 | ID=Msa0111040;Name=Msa0111040 |
| chr1_3 | mRNA | 24475037 | 24478273 | 24475037 | ID=Msa0111040-mRNA-1;Parent=Msa0111040;Name=Msa0111040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0.25|4|0|452 |
| chr1_3 | exon | 24475037 | 24475280 | 24475037 | ID=Msa0111040-mRNA-1:exon:8434;Parent=Msa0111040-mRNA-1 |
| chr1_3 | exon | 24475293 | 24475513 | 24475293 | ID=Msa0111040-mRNA-1:exon:8435;Parent=Msa0111040-mRNA-1 |
| chr1_3 | exon | 24475580 | 24475720 | 24475580 | ID=Msa0111040-mRNA-1:exon:8436;Parent=Msa0111040-mRNA-1 |
| chr1_3 | exon | 24477521 | 24478273 | 24477521 | ID=Msa0111040-mRNA-1:exon:8437;Parent=Msa0111040-mRNA-1 |
| chr1_3 | CDS | 24475037 | 24475280 | 24475037 | ID=Msa0111040-mRNA-1:cds;Parent=Msa0111040-mRNA-1 |
| chr1_3 | CDS | 24475293 | 24475513 | 24475293 | ID=Msa0111040-mRNA-1:cds;Parent=Msa0111040-mRNA-1 |
| chr1_3 | CDS | 24475580 | 24475720 | 24475580 | ID=Msa0111040-mRNA-1:cds;Parent=Msa0111040-mRNA-1 |
| chr1_3 | CDS | 24477521 | 24478273 | 24477521 | ID=Msa0111040-mRNA-1:cds;Parent=Msa0111040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
