Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0154960 | KAF9688951.1 | 68.134 | 477 | 113 | 9 | 5 | 452 | 25 | 491 | 0.0 | 592 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0154960 | sp|Q9T0H8|DIR18_ARATH | 69.136 | 243 | 70 | 2 | 210 | 452 | 7 | 244 | 7.62e-110 | 327 |
Msa0154960 | sp|Q9T0H8|DIR18_ARATH | 58.874 | 231 | 62 | 4 | 1 | 205 | 19 | 242 | 9.67e-76 | 239 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0154960 | A0A6N2M652 | 67.992 | 478 | 115 | 9 | 5 | 452 | 25 | 494 | 0.0 | 594 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017350 | Msa0154960 | 0.804457 | 2.140137e-49 | -8.615850e-47 |
Msa0024650 | Msa0154960 | 0.802818 | 4.684448e-49 | -8.615850e-47 |
Msa0065590 | Msa0154960 | 0.802205 | 6.265649e-49 | -8.615850e-47 |
Msa0111040 | Msa0154960 | 0.805415 | 1.349958e-49 | -8.615850e-47 |
Msa0150910 | Msa0154960 | 0.803778 | 2.964066e-49 | -8.615850e-47 |
Msa0154960 | Msa0163340 | 0.807069 | 6.051865e-50 | -8.615850e-47 |
Msa0154960 | Msa0163690 | 0.803073 | 4.148858e-49 | -8.615850e-47 |
Msa0154960 | Msa0896920 | 0.833004 | 6.840565e-56 | -8.615850e-47 |
Msa0154960 | Msa0913550 | 0.802067 | 6.689211e-49 | -8.615850e-47 |
Msa0154960 | Msa0932930 | 0.809217 | 2.110761e-50 | -8.615850e-47 |
Msa0154960 | Msa1323120 | 0.816638 | 4.988575e-52 | -8.615850e-47 |
Msa0154960 | Msa1445900 | 0.809718 | 1.647737e-50 | -8.615850e-47 |
Msa0154960 | Msa1459610 | 0.801848 | 7.418176e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0154960 | MtrunA17_Chr1g0169291 | 98.000 | 250 | 5 | 0 | 203 | 452 | 1 | 250 | 3.47e-173 | 485 |
Msa0154960 | MtrunA17_Chr1g0169291 | 76.754 | 228 | 25 | 3 | 4 | 205 | 23 | 248 | 4.10e-106 | 315 |
Msa0154960 | MtrunA17_Chr1g0169511 | 98.000 | 250 | 5 | 0 | 203 | 452 | 1 | 250 | 2.08e-172 | 483 |
Msa0154960 | MtrunA17_Chr1g0169511 | 76.754 | 228 | 25 | 3 | 4 | 205 | 23 | 248 | 7.19e-112 | 329 |
Msa0154960 | MtrunA17_Chr1g0169281 | 84.677 | 248 | 36 | 1 | 207 | 452 | 9 | 256 | 6.64e-141 | 404 |
Msa0154960 | MtrunA17_Chr1g0169281 | 84.848 | 231 | 9 | 2 | 1 | 205 | 24 | 254 | 6.09e-120 | 350 |
Msa0154960 | MtrunA17_Chr1g0212861 | 40.426 | 235 | 121 | 5 | 237 | 452 | 119 | 353 | 2.18e-39 | 145 |
Msa0154960 | MtrunA17_Chr1g0212861 | 34.322 | 236 | 106 | 6 | 16 | 205 | 119 | 351 | 1.48e-24 | 104 |
Msa0154960 | MtrunA17_Chr4g0030731 | 42.478 | 226 | 120 | 4 | 237 | 452 | 78 | 303 | 2.53e-39 | 144 |
Msa0154960 | MtrunA17_Chr4g0030731 | 36.283 | 226 | 100 | 5 | 16 | 202 | 78 | 298 | 9.60e-25 | 103 |
Msa0154960 | MtrunA17_Chr4g0030681 | 44.053 | 227 | 114 | 5 | 237 | 452 | 80 | 304 | 2.93e-39 | 143 |
Msa0154960 | MtrunA17_Chr4g0030681 | 36.283 | 226 | 99 | 5 | 16 | 202 | 80 | 299 | 1.06e-24 | 103 |
Msa0154960 | MtrunA17_Chr7g0221601 | 39.754 | 244 | 114 | 8 | 231 | 450 | 153 | 387 | 4.33e-39 | 145 |
Msa0154960 | MtrunA17_Chr7g0221601 | 33.594 | 256 | 104 | 8 | 2 | 205 | 146 | 387 | 6.88e-25 | 105 |
Msa0154960 | MtrunA17_Chr4g0030671 | 32.979 | 282 | 170 | 8 | 184 | 450 | 3 | 280 | 1.14e-35 | 133 |
Msa0154960 | MtrunA17_Chr4g0030671 | 33.333 | 225 | 110 | 7 | 18 | 205 | 59 | 280 | 1.53e-21 | 94.4 |
Msa0154960 | MtrunA17_Chr1g0212871 | 32.367 | 207 | 110 | 5 | 241 | 442 | 51 | 232 | 6.37e-21 | 91.7 |
Msa0154960 | MtrunA17_Chr1g0175911 | 36.697 | 109 | 66 | 2 | 320 | 425 | 62 | 170 | 9.01e-14 | 69.7 |
Msa0154960 | MtrunA17_Chr4g0024951 | 35.345 | 116 | 66 | 3 | 338 | 450 | 66 | 175 | 2.36e-13 | 68.2 |
Msa0154960 | MtrunA17_Chr7g0259071 | 42.553 | 94 | 52 | 2 | 336 | 427 | 76 | 169 | 3.51e-13 | 68.2 |
Msa0154960 | MtrunA17_Chr4g0068381 | 35.955 | 89 | 56 | 1 | 336 | 423 | 66 | 154 | 7.75e-13 | 67.0 |
Msa0154960 | MtrunA17_Chr4g0005111 | 41.111 | 90 | 52 | 1 | 338 | 426 | 78 | 167 | 9.75e-13 | 66.6 |
Msa0154960 | MtrunA17_Chr7g0259091 | 40.000 | 95 | 55 | 2 | 335 | 427 | 78 | 172 | 1.25e-12 | 66.6 |
Msa0154960 | MtrunA17_Chr3g0085321 | 37.963 | 108 | 64 | 2 | 320 | 424 | 57 | 164 | 1.34e-12 | 66.2 |
Msa0154960 | MtrunA17_Chr4g0068391 | 38.000 | 100 | 59 | 3 | 330 | 427 | 60 | 158 | 1.64e-12 | 65.9 |
Msa0154960 | MtrunA17_Chr4g0005011 | 31.624 | 117 | 73 | 2 | 337 | 452 | 86 | 196 | 2.93e-12 | 65.5 |
Msa0154960 | MtrunA17_Chr4g0024961 | 40.909 | 88 | 51 | 1 | 338 | 424 | 66 | 153 | 4.64e-12 | 64.7 |
Msa0154960 | MtrunA17_Chr3g0085301 | 34.579 | 107 | 67 | 2 | 321 | 424 | 63 | 169 | 5.57e-12 | 64.7 |
Msa0154960 | MtrunA17_Chr7g0259101 | 40.000 | 95 | 55 | 2 | 335 | 427 | 78 | 172 | 1.19e-11 | 66.2 |
Msa0154960 | MtrunA17_Chr7g0259101 | 40.000 | 95 | 55 | 2 | 335 | 427 | 277 | 371 | 1.35e-11 | 65.9 |
Msa0154960 | MtrunA17_Chr3g0085311 | 39.362 | 94 | 56 | 1 | 337 | 429 | 76 | 169 | 1.33e-11 | 63.5 |
Msa0154960 | MtrunA17_Chr4g0005131 | 39.362 | 94 | 56 | 1 | 337 | 429 | 78 | 171 | 2.46e-11 | 62.8 |
Msa0154960 | MtrunA17_Chr7g0259121 | 39.175 | 97 | 53 | 2 | 336 | 427 | 76 | 171 | 4.08e-11 | 62.8 |
Msa0154960 | MtrunA17_Chr3g0090231 | 32.110 | 109 | 73 | 1 | 317 | 424 | 52 | 160 | 7.57e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0154960 | AT4G13580.1 | 69.136 | 243 | 70 | 2 | 210 | 452 | 7 | 244 | 7.75e-111 | 327 |
Msa0154960 | AT4G13580.1 | 58.874 | 231 | 62 | 4 | 1 | 205 | 19 | 242 | 9.83e-77 | 239 |
Msa0154960 | AT3G24020.1 | 66.802 | 247 | 76 | 3 | 207 | 452 | 2 | 243 | 8.62e-111 | 327 |
Msa0154960 | AT3G24020.1 | 58.009 | 231 | 64 | 4 | 1 | 205 | 18 | 241 | 6.82e-77 | 240 |
Msa0154960 | AT1G07730.2 | 43.913 | 230 | 105 | 6 | 243 | 452 | 164 | 389 | 1.50e-43 | 157 |
Msa0154960 | AT1G07730.2 | 39.556 | 225 | 94 | 7 | 22 | 205 | 164 | 387 | 2.48e-23 | 101 |
Msa0154960 | AT2G28670.2 | 44.348 | 230 | 102 | 6 | 245 | 452 | 1 | 226 | 9.24e-42 | 148 |
Msa0154960 | AT2G28670.2 | 39.111 | 225 | 93 | 7 | 24 | 205 | 1 | 224 | 2.61e-23 | 98.2 |
Msa0154960 | AT2G28670.1 | 44.397 | 232 | 103 | 6 | 243 | 452 | 209 | 436 | 4.35e-41 | 152 |
Msa0154960 | AT2G28670.1 | 39.207 | 227 | 94 | 7 | 22 | 205 | 209 | 434 | 4.81e-23 | 101 |
Msa0154960 | AT2G39430.1 | 38.843 | 242 | 124 | 6 | 234 | 452 | 80 | 320 | 5.28e-38 | 141 |
Msa0154960 | AT2G39430.1 | 35.146 | 239 | 109 | 6 | 13 | 205 | 80 | 318 | 9.06e-28 | 113 |
Msa0154960 | AT3G55230.1 | 37.860 | 243 | 127 | 6 | 233 | 452 | 62 | 303 | 2.33e-37 | 139 |
Msa0154960 | AT3G55230.1 | 36.667 | 240 | 106 | 7 | 12 | 205 | 62 | 301 | 2.44e-31 | 122 |
Msa0154960 | AT1G65870.1 | 36.364 | 110 | 67 | 2 | 324 | 430 | 62 | 171 | 4.37e-14 | 71.2 |
Msa0154960 | AT5G42510.1 | 41.304 | 92 | 53 | 1 | 334 | 424 | 69 | 160 | 2.42e-13 | 68.6 |
Msa0154960 | AT3G13650.1 | 37.634 | 93 | 57 | 1 | 338 | 429 | 74 | 166 | 7.73e-13 | 67.4 |
Msa0154960 | AT5G42500.1 | 38.710 | 93 | 56 | 1 | 336 | 427 | 74 | 166 | 1.74e-12 | 66.2 |
Msa0154960 | AT3G58090.1 | 37.500 | 88 | 54 | 1 | 341 | 427 | 163 | 250 | 6.56e-12 | 66.2 |
Msa0154960 | AT1G22900.1 | 39.773 | 88 | 52 | 1 | 338 | 424 | 84 | 171 | 6.01e-11 | 62.0 |
Find 154 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTTGAAGGAGGGGAATA+TGG | 0.272005 | 1_4:-19823064 | Msa0154960:CDS |
ACTAACATCTCAACCTGAAT+TGG | 0.273439 | 1_4:-19823170 | Msa0154960:CDS |
TCCTTTCCTGTGGCTGCAAT+TGG | 0.276263 | 1_4:+19826743 | None:intergenic |
CCTACTGTTAATGGTGTTAC+TGG | 0.279068 | 1_4:-19826548 | Msa0154960:intron |
ACCATTTGAGAACCCAATTC+AGG | 0.294933 | 1_4:+19823157 | None:intergenic |
TCTTTCCCTGTGGCTGCAAT+AGG | 0.295887 | 1_4:+19823520 | None:intergenic |
GGATTAACACCATTTGCATT+AGG | 0.297019 | 1_4:+19826569 | None:intergenic |
TCTGCTCCCATCTGCTGAAC+TGG | 0.314904 | 1_4:+19823108 | None:intergenic |
AAGTACTATGTCGCGATTAT+CGG | 0.316886 | 1_4:-19826222 | Msa0154960:CDS |
GGACCTGATGGACTTGGATT+AGG | 0.319881 | 1_4:-19826440 | Msa0154960:CDS |
GGGATAGCACCATTTGCATT+AGG | 0.322975 | 1_4:+19823346 | None:intergenic |
GATGGACTTGGATTAGGATT+TGG | 0.351208 | 1_4:-19826434 | Msa0154960:CDS |
GATTAACACCATTTGCATTA+GGG | 0.356622 | 1_4:+19826570 | None:intergenic |
GGTGTTAATCCTACTGTTAA+TGG | 0.373730 | 1_4:-19826557 | Msa0154960:CDS |
GTGCCCTTTGCTACGCCAAT+AGG | 0.374086 | 1_4:-19823400 | Msa0154960:CDS |
TTAACATCTCAACCAGAGTT+AGG | 0.377354 | 1_4:-19826386 | Msa0154960:CDS |
GATGGACTTGGACTAGGATT+TGG | 0.379130 | 1_4:-19823217 | Msa0154960:CDS |
GGATAGCACCATTTGCATTA+GGG | 0.380996 | 1_4:+19823347 | None:intergenic |
TTGCCCAACAAACCAGTTAC+AGG | 0.383511 | 1_4:+19823439 | None:intergenic |
CCAACGGCTCGACCTGTAAC+TGG | 0.386025 | 1_4:-19823451 | Msa0154960:CDS |
TGATTGTTATTGTTATTGTT+TGG | 0.402312 | 1_4:+19826485 | None:intergenic |
CCCACCGTCAATGGTGTTAC+CGG | 0.405737 | 1_4:-19823325 | Msa0154960:CDS |
TCGACCTGTAACTGGTTTGT+TGG | 0.407309 | 1_4:-19823443 | Msa0154960:CDS |
ATGTCGCGATTATCTGTAAT+AGG | 0.409553 | 1_4:-19822998 | Msa0154960:CDS |
ACCTGAATTGGGTTCTCAAA+TGG | 0.412760 | 1_4:-19823158 | Msa0154960:CDS |
CTTGGAATGTTGAATCCAAC+TGG | 0.413683 | 1_4:+19826608 | None:intergenic |
ACAAATTGTTGGAAAGGGTC+AGG | 0.415848 | 1_4:-19826360 | Msa0154960:CDS |
ACCTGTCCAGGTGGAATAAG+AGG | 0.418722 | 1_4:+19826146 | None:intergenic |
ATCTGTCCTGGTGGGATAAG+AGG | 0.419373 | 1_4:+19822929 | None:intergenic |
CCGGCCAAGCCAGTTCCTAA+TGG | 0.422044 | 1_4:+19823298 | None:intergenic |
GGTGTTACCGGTATCCCATT+AGG | 0.429831 | 1_4:-19823313 | Msa0154960:CDS |
TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1_4:-19823484 | Msa0154960:CDS |
TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1_4:-19826707 | Msa0154960:CDS |
CCTTTAGGAACTGGTTTAGC+TGG | 0.430422 | 1_4:-19826521 | Msa0154960:intron |
CGACCTGTAACTGGTTTGTT+GGG | 0.436040 | 1_4:-19823442 | Msa0154960:CDS |
TTATCGGTTGTAGGAGGGAC+GGG | 0.439221 | 1_4:-19826206 | Msa0154960:CDS |
CACAGCCTTGTTTGAAGGAG+GGG | 0.440382 | 1_4:-19823071 | Msa0154960:CDS |
CGGCCAAGCCAGTTCCTAAT+GGG | 0.445570 | 1_4:+19823299 | None:intergenic |
CCGGTCACTGGTCGAGCCGT+TGG | 0.445896 | 1_4:+19826674 | None:intergenic |
ACACCATTTGCATTAGGGAT+TGG | 0.448404 | 1_4:+19826575 | None:intergenic |
ACCGGTATCCCATTAGGAAC+TGG | 0.448563 | 1_4:-19823307 | Msa0154960:CDS |
ACCTCTTATTCCACCTGGAC+AGG | 0.449379 | 1_4:-19826147 | Msa0154960:CDS |
AATTGGGTTCTCAAATGGTT+GGG | 0.455097 | 1_4:-19823153 | Msa0154960:CDS |
CTAACATCTCAACCTGAATT+GGG | 0.457016 | 1_4:-19823169 | Msa0154960:CDS |
GGAAGTTTAAGTATGCTAAA+GGG | 0.460142 | 1_4:-19826184 | Msa0154960:CDS |
GGGAAGTTTAAGTATGCTAA+AGG | 0.463071 | 1_4:-19826185 | Msa0154960:CDS |
GGTGCTATCCCCACCGTCAA+TGG | 0.466899 | 1_4:-19823334 | Msa0154960:CDS |
CACGGTACTAGTATTTCAAA+TGG | 0.467016 | 1_4:+19822867 | None:intergenic |
TGTGGAGTGTTGAATCCTAT+TGG | 0.468305 | 1_4:+19823385 | None:intergenic |
CCATCGGTGGCAATCTGTCC+TGG | 0.470378 | 1_4:+19822917 | None:intergenic |
AACAATGTTCAGTTAACGTT+AGG | 0.471550 | 1_4:-19826461 | Msa0154960:CDS |
GTATTCACAGCCTTGTTTGA+AGG | 0.475516 | 1_4:-19823076 | Msa0154960:CDS |
TATATCTCCCTTGGTAATGT+TGG | 0.476134 | 1_4:-19823584 | Msa0154960:CDS |
GGTTCACAAATTGTTGGAAA+GGG | 0.477487 | 1_4:-19826365 | Msa0154960:CDS |
TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1_4:+19823496 | None:intergenic |
TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1_4:+19826719 | None:intergenic |
CAGTTACAGGTCGAGCCGTT+GGG | 0.481365 | 1_4:+19823452 | None:intergenic |
GAATTGGGTTCTCAAATGGT+TGG | 0.482363 | 1_4:-19823154 | Msa0154960:CDS |
AACAATGCTCAGGTGCAGTT+AGG | 0.485687 | 1_4:-19823244 | Msa0154960:CDS |
ATGCCAATCCCTAATGCAAA+TGG | 0.485841 | 1_4:-19826578 | Msa0154960:CDS |
CGGTCACTGGTCGAGCCGTT+GGG | 0.485879 | 1_4:+19826675 | None:intergenic |
CAAATTGTTGGAAAGGGTCA+GGG | 0.488459 | 1_4:-19826359 | Msa0154960:CDS |
CCATTAGGAACTGGCTTGGC+CGG | 0.489357 | 1_4:-19823298 | Msa0154960:CDS |
CCAGTTACAGGTCGAGCCGT+TGG | 0.504256 | 1_4:+19823451 | None:intergenic |
AATCCTAATCCAAGTCCATC+AGG | 0.506312 | 1_4:+19826437 | None:intergenic |
AATCCTAGTCCAAGTCCATC+AGG | 0.508608 | 1_4:+19823220 | None:intergenic |
ATTCCCATCCCTAATGCAAA+TGG | 0.509041 | 1_4:-19823355 | Msa0154960:CDS |
GAGTTAGGTTCACAAATTGT+TGG | 0.509703 | 1_4:-19826371 | Msa0154960:CDS |
CGACCAGTGACCGGTTTGCT+CGG | 0.510231 | 1_4:-19826665 | Msa0154960:CDS |
GGACCTGATGGACTTGGACT+AGG | 0.513199 | 1_4:-19823223 | Msa0154960:CDS |
CCTGGACAGGTTGCTACTGA+TGG | 0.513998 | 1_4:-19826134 | Msa0154960:CDS |
ATGTAGCAAGTTCGGCTGAC+GGG | 0.514478 | 1_4:-19826331 | Msa0154960:CDS |
AGGTTCACAAATTGTTGGAA+AGG | 0.517920 | 1_4:-19826366 | Msa0154960:CDS |
AGCACCATTTGCATTAGGGA+TGG | 0.519741 | 1_4:+19823351 | None:intergenic |
ACGTTAGGACCTGATGGACT+TGG | 0.520993 | 1_4:-19826446 | Msa0154960:CDS |
GCCAGTTCCTAATGGGATAC+CGG | 0.525881 | 1_4:+19823306 | None:intergenic |
CCATCAGTAGCAACCTGTCC+AGG | 0.527354 | 1_4:+19826134 | None:intergenic |
AATCCTATTGGCGTAGCAAA+GGG | 0.527683 | 1_4:+19823397 | None:intergenic |
ATTACTAACTATATCTCCCT+TGG | 0.528125 | 1_4:-19823593 | Msa0154960:CDS |
TCGCGATTATCGGTTGTAGG+AGG | 0.528452 | 1_4:-19826212 | Msa0154960:CDS |
TTATCTGTAATAGGAGGTAC+AGG | 0.528693 | 1_4:-19822989 | Msa0154960:CDS |
GAATCCAACTGGGGTTGCAA+AGG | 0.532298 | 1_4:+19826619 | None:intergenic |
AGATGGGAGCAGACAGATGA+TGG | 0.537603 | 1_4:-19823098 | Msa0154960:CDS |
GAATCCTATTGGCGTAGCAA+AGG | 0.538440 | 1_4:+19823396 | None:intergenic |
CAGTTAGGACCTGATGGACT+TGG | 0.539311 | 1_4:-19823229 | Msa0154960:CDS |
ACAATTTGTGAACCTAACTC+TGG | 0.539499 | 1_4:+19826374 | None:intergenic |
ATGTCGCGATTATCGGTTGT+AGG | 0.540679 | 1_4:-19826215 | Msa0154960:CDS |
GTATATGTTGCCGAGCAAAC+CGG | 0.541501 | 1_4:+19826655 | None:intergenic |
TTCATGCATGACATTCTTGG+TGG | 0.543393 | 1_4:-19826704 | Msa0154960:CDS |
GTTGATCCTATTGCAGCCAC+AGG | 0.543729 | 1_4:-19823526 | Msa0154960:CDS |
GCACCATTTGCATTAGGGAT+GGG | 0.543769 | 1_4:+19823352 | None:intergenic |
CTGAGACCTCTTATTCCACC+TGG | 0.543896 | 1_4:-19826152 | Msa0154960:CDS |
CAGGTGCAGTTAGGACCTGA+TGG | 0.543932 | 1_4:-19823235 | Msa0154960:CDS |
AATCCAACTGGGGTTGCAAA+GGG | 0.544346 | 1_4:+19826620 | None:intergenic |
AATGATTGGTTCCTTTCCTG+TGG | 0.544898 | 1_4:+19826733 | None:intergenic |
GGGATTGGCATACTATCACT+TGG | 0.545050 | 1_4:+19826590 | None:intergenic |
TTGCCGAGCAAACCGGTCAC+TGG | 0.546279 | 1_4:+19826662 | None:intergenic |
CAGCAATGTCTCTGCACCAT+CGG | 0.547801 | 1_4:+19822901 | None:intergenic |
GGAAAGTTCAAGAATGCAAG+GGG | 0.548640 | 1_4:-19822968 | Msa0154960:CDS |
CCGGTAACACCATTGACGGT+GGG | 0.548993 | 1_4:+19823325 | None:intergenic |
CGCGATTATCGGTTGTAGGA+GGG | 0.549189 | 1_4:-19826211 | Msa0154960:CDS |
GTACCCTTTGCAACCCCAGT+TGG | 0.549320 | 1_4:-19826623 | Msa0154960:CDS |
TTGGCGTAGCAAAGGGCACT+TGG | 0.550533 | 1_4:+19823404 | None:intergenic |
TTCACAGCCTTGTTTGAAGG+AGG | 0.552103 | 1_4:-19823073 | Msa0154960:CDS |
GAAAGCTCAAGGTGTTTATG+TGG | 0.553581 | 1_4:-19823131 | Msa0154960:CDS |
CAACAATCAAAACAATGCTC+AGG | 0.557905 | 1_4:-19823254 | Msa0154960:CDS |
TTCATGCATGACATTCTTGG+TGG | 0.560639 | 1_4:-19823481 | Msa0154960:CDS |
TCCAATTGCAGCCACAGGAA+AGG | 0.562874 | 1_4:-19826744 | Msa0154960:CDS |
ATGTGGCCAGTTCAGCAGAT+GGG | 0.562896 | 1_4:-19823114 | Msa0154960:CDS |
TATCCCATTAGGAACTGGCT+TGG | 0.563120 | 1_4:-19823302 | Msa0154960:CDS |
TGACGGGAGTAGACAGATGA+TGG | 0.563922 | 1_4:-19826315 | Msa0154960:intron |
GTTTGGTGCAAACGAAGTAC+CGG | 0.565262 | 1_4:+19823279 | None:intergenic |
CAGGAAAGTTCAAGAATGCA+AGG | 0.567749 | 1_4:-19822970 | Msa0154960:CDS |
ATTGATCCAATTGCAGCCAC+AGG | 0.569919 | 1_4:-19826749 | Msa0154960:CDS |
GATACCGGTAACACCATTGA+CGG | 0.571930 | 1_4:+19823321 | None:intergenic |
TCACAGCCTTGTTTGAAGGA+GGG | 0.575570 | 1_4:-19823072 | Msa0154960:CDS |
CCAGGACAGATTGCCACCGA+TGG | 0.577534 | 1_4:-19822917 | Msa0154960:CDS |
TATGTGGCCAGTTCAGCAGA+TGG | 0.577572 | 1_4:-19823115 | Msa0154960:CDS |
CAAATGGTTGGGAAAGCTCA+AGG | 0.578447 | 1_4:-19823142 | Msa0154960:CDS |
CCAGTAACACCATTAACAGT+AGG | 0.579036 | 1_4:+19826548 | None:intergenic |
CAGTTAACGTTAGGACCTGA+TGG | 0.580607 | 1_4:-19826452 | Msa0154960:CDS |
AAATTGTTGGAAAGGGTCAG+GGG | 0.581072 | 1_4:-19826358 | Msa0154960:CDS |
TATGTAGCAAGTTCGGCTGA+CGG | 0.590795 | 1_4:-19826332 | Msa0154960:CDS |
CGGTGGCAATCTGTCCTGGT+GGG | 0.590855 | 1_4:+19822921 | None:intergenic |
CTGAGACCTCTTATCCCACC+AGG | 0.596655 | 1_4:-19822935 | Msa0154960:CDS |
AATGATTGGTTCTTTCCCTG+TGG | 0.602584 | 1_4:+19823510 | None:intergenic |
TATCGGTTGTAGGAGGGACG+GGG | 0.603964 | 1_4:-19826205 | Msa0154960:CDS |
CCAACGGCTCGACCAGTGAC+CGG | 0.606503 | 1_4:-19826674 | Msa0154960:CDS |
ACCGGTAACACCATTGACGG+TGG | 0.606801 | 1_4:+19823324 | None:intergenic |
TCGGTGGCAATCTGTCCTGG+TGG | 0.607409 | 1_4:+19822920 | None:intergenic |
ATATTCCCCTCCTTCAAACA+AGG | 0.608813 | 1_4:+19823066 | None:intergenic |
TTGGAATGTTGAATCCAACT+GGG | 0.618283 | 1_4:+19826609 | None:intergenic |
CAATGTCTCTGCACCATCGG+TGG | 0.621063 | 1_4:+19822904 | None:intergenic |
ATTATCGGTTGTAGGAGGGA+CGG | 0.632538 | 1_4:-19826207 | Msa0154960:CDS |
CGGTAACACCATTGACGGTG+GGG | 0.636153 | 1_4:+19823326 | None:intergenic |
TCGCGATTATCTGTAATAGG+AGG | 0.640067 | 1_4:-19822995 | Msa0154960:CDS |
AGGAAAGTTCAAGAATGCAA+GGG | 0.644422 | 1_4:-19822969 | Msa0154960:CDS |
ATAGGATTCAACACTCCACA+AGG | 0.647615 | 1_4:-19823382 | Msa0154960:CDS |
AAAACAACCAACATTACCAA+GGG | 0.648351 | 1_4:+19823577 | None:intergenic |
GATTCAACACTCCACAAGGT+GGG | 0.655383 | 1_4:-19823378 | Msa0154960:CDS |
TCTTGGTGGCAGTAACCCAA+CGG | 0.656099 | 1_4:-19826690 | Msa0154960:CDS |
TCAGTAGCAACCTGTCCAGG+TGG | 0.657359 | 1_4:+19826137 | None:intergenic |
AATTGTTGGAAAGGGTCAGG+GGG | 0.661911 | 1_4:-19826357 | Msa0154960:CDS |
TTGATCCTATTGCAGCCACA+GGG | 0.667498 | 1_4:-19823525 | Msa0154960:CDS |
GGATTCAACACTCCACAAGG+TGG | 0.671295 | 1_4:-19823379 | Msa0154960:CDS |
GGGATGGGAATCCCACCTTG+TGG | 0.684821 | 1_4:+19823367 | None:intergenic |
TTGTTGGGCAACATATACAG+TGG | 0.686502 | 1_4:-19823427 | Msa0154960:CDS |
ATGGTGCTGAGACTTTGTTG+AGG | 0.693982 | 1_4:-19826115 | Msa0154960:CDS |
TATTACAGATAATCGCGACA+TGG | 0.703227 | 1_4:+19823000 | None:intergenic |
TCTTGGTGGAAGTAACCCAA+CGG | 0.712556 | 1_4:-19823467 | Msa0154960:CDS |
TTGCTCGGCAACATATACAG+TGG | 0.727097 | 1_4:-19826650 | Msa0154960:CDS |
TGGAATGTTGAATCCAACTG+GGG | 0.746650 | 1_4:+19826610 | None:intergenic |
ATGGTGCAGAGACATTGCTG+AGG | 0.778387 | 1_4:-19822898 | Msa0154960:CDS |
GAAAGTTCAAGAATGCAAGG+GGG | 0.779865 | 1_4:-19822967 | Msa0154960:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAACTTTTATATATAAGATT+TGG | - | chr1_4:19825294-19825313 | Msa0154960:intron | 10.0% |
!! | AAAATTAACAACTAAATACA+AGG | + | chr1_4:19823725-19823744 | None:intergenic | 15.0% |
!! | AAATGGATAAATGAATAAAA+TGG | - | chr1_4:19823840-19823859 | Msa0154960:intron | 15.0% |
!!! | AAGATAAAATACTTTTTCTT+TGG | - | chr1_4:19824073-19824092 | Msa0154960:intron | 15.0% |
!!! | AGATAAAATACTTTTTCTTT+GGG | - | chr1_4:19824074-19824093 | Msa0154960:intron | 15.0% |
!!! | TATTAACAGAAGTTTTTTTA+GGG | + | chr1_4:19824395-19824414 | None:intergenic | 15.0% |
!! | TTCTGTTAATAGTTTAAATT+TGG | - | chr1_4:19824404-19824423 | Msa0154960:intron | 15.0% |
!! | TCTGTTAATAGTTTAAATTT+GGG | - | chr1_4:19824405-19824424 | Msa0154960:intron | 15.0% |
!!! | TCTAAGTAATTTTAAGAATT+TGG | - | chr1_4:19825459-19825478 | Msa0154960:intron | 15.0% |
!!! | ATAACAAAAGTATTTAGAAA+AGG | - | chr1_4:19825621-19825640 | Msa0154960:intron | 15.0% |
!!! | TGATTGTTATTGTTATTGTT+TGG | + | chr1_4:19823162-19823181 | None:intergenic | 20.0% |
!!! | TTTTATGGTTTGTATAAGAT+TGG | - | chr1_4:19823399-19823418 | Msa0154960:CDS | 20.0% |
!! | GATGATTATTATTATCAGTT+TGG | - | chr1_4:19823638-19823657 | Msa0154960:intron | 20.0% |
!!! | TAGTTGTTAATTTTGCAATA+TGG | - | chr1_4:19823731-19823750 | Msa0154960:intron | 20.0% |
!!! | AGTTGTTAATTTTGCAATAT+GGG | - | chr1_4:19823732-19823751 | Msa0154960:intron | 20.0% |
!! | GATTGCAGTAAATATTTAAT+TGG | + | chr1_4:19823963-19823982 | None:intergenic | 20.0% |
!!! | CTATTAACAGAAGTTTTTTT+AGG | + | chr1_4:19824396-19824415 | None:intergenic | 20.0% |
!!! | ATCTCATTGACTAATAAATT+TGG | - | chr1_4:19824528-19824547 | Msa0154960:intron | 20.0% |
!! | AAAACTATAAGAGAAACTAT+AGG | + | chr1_4:19824748-19824767 | None:intergenic | 20.0% |
!! | GTATAAATATTGTGGAAAAT+AGG | + | chr1_4:19824876-19824895 | None:intergenic | 20.0% |
!! | TTCCACAATATTTATACTAT+AGG | - | chr1_4:19824879-19824898 | Msa0154960:intron | 20.0% |
!! | GAATATTATATAACTCAATG+AGG | + | chr1_4:19825707-19825726 | None:intergenic | 20.0% |
!!! | AGAAATATTGACTACAATTT+TGG | - | chr1_4:19825829-19825848 | Msa0154960:intron | 20.0% |
!!! | TTTTATGGTTTGTATAAGAT+AGG | - | chr1_4:19823399-19823418 | Msa0154960:CDS | 20.0% |
!! | GGTGATAGTTTGAATTTTTA+TGG | - | chr1_4:19823384-19823403 | Msa0154960:CDS | 25.0% |
!!! | TTAGTTTGTTTGCATGTATT+TGG | - | chr1_4:19823673-19823692 | Msa0154960:intron | 25.0% |
!! | TGATGTATAAAGCACTAATA+CGG | - | chr1_4:19823805-19823824 | Msa0154960:intron | 25.0% |
! | ACAAAGTTATTCTTCAATAC+AGG | - | chr1_4:19824007-19824026 | Msa0154960:intron | 25.0% |
!! | ATGTTTTCAATTTCTTGAAC+TGG | + | chr1_4:19824039-19824058 | None:intergenic | 25.0% |
! | ATAGTTAAACTACATCACTT+TGG | - | chr1_4:19824150-19824169 | Msa0154960:intron | 25.0% |
! | TAGTTAAACTACATCACTTT+GGG | - | chr1_4:19824151-19824170 | Msa0154960:intron | 25.0% |
!!! | AAGTATGCACTTTTTAACTT+AGG | + | chr1_4:19824275-19824294 | None:intergenic | 25.0% |
!!! | AATAGTTTGTTTGATGTTAC+CGG | - | chr1_4:19824328-19824347 | Msa0154960:intron | 25.0% |
!!! | TAGTTTAAATTTGGGTTTTG+TGG | - | chr1_4:19824413-19824432 | Msa0154960:intron | 25.0% |
! | TAGAACAAAATGACGTATTT+CGG | + | chr1_4:19824681-19824700 | None:intergenic | 25.0% |
!! | TAATGAGTTGGATCTAAATA+TGG | + | chr1_4:19824711-19824730 | None:intergenic | 25.0% |
! | AGATTTATAGACTAATGAGT+TGG | + | chr1_4:19824723-19824742 | None:intergenic | 25.0% |
!! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr1_4:19824751-19824770 | Msa0154960:intron | 25.0% |
! | AAGATGAATAGATCAAATAG+AGG | + | chr1_4:19824806-19824825 | None:intergenic | 25.0% |
! | CATCTTACTATAGAATCTAT+AGG | - | chr1_4:19824820-19824839 | Msa0154960:intron | 25.0% |
! | CACCTATAGTATAAATATTG+TGG | + | chr1_4:19824884-19824903 | None:intergenic | 25.0% |
! | ACAACATTGTAGATATAGTT+GGG | + | chr1_4:19824911-19824930 | None:intergenic | 25.0% |
!!! | GTTTTATGGAAAAGAGTATT+GGG | + | chr1_4:19825029-19825048 | None:intergenic | 25.0% |
!!! | TGTTTTATGGAAAAGAGTAT+TGG | + | chr1_4:19825030-19825049 | None:intergenic | 25.0% |
!!! | TTTTTTCACTTCAACTTAAG+TGG | - | chr1_4:19825075-19825094 | Msa0154960:intron | 25.0% |
! | GTAAATCATCTTATTCAAGT+TGG | + | chr1_4:19825151-19825170 | None:intergenic | 25.0% |
!! | TAGTCAATATTTCTGATAAG+TGG | + | chr1_4:19825823-19825842 | None:intergenic | 25.0% |
! | ATTATATAAGAGGGAATGAA+GGG | + | chr1_4:19825928-19825947 | None:intergenic | 25.0% |
! | TATTATATAAGAGGGAATGA+AGG | + | chr1_4:19825929-19825948 | None:intergenic | 25.0% |
! | AGTCTTGGTATTATATAAGA+GGG | + | chr1_4:19825937-19825956 | None:intergenic | 25.0% |
! | AAGTCTTGGTATTATATAAG+AGG | + | chr1_4:19825938-19825957 | None:intergenic | 25.0% |
! | TAGATACTAGTATTTCTTTG+TGG | + | chr1_4:19825997-19826016 | None:intergenic | 25.0% |
! | GTATCTATATCTGAAAAACT+TGG | - | chr1_4:19826010-19826029 | Msa0154960:intron | 25.0% |
! | TGAAAAACTTGGAAAAAAGA+TGG | - | chr1_4:19826021-19826040 | Msa0154960:intron | 25.0% |
GATTAACACCATTTGCATTA+GGG | + | chr1_4:19823077-19823096 | None:intergenic | 30.0% | |
AACAATGTTCAGTTAACGTT+AGG | - | chr1_4:19823183-19823202 | Msa0154960:CDS | 30.0% | |
!! | GTTTTTACAGCACTTTTTGA+AGG | - | chr1_4:19823351-19823370 | Msa0154960:CDS | 30.0% |
GGAAGTTTAAGTATGCTAAA+GGG | - | chr1_4:19823460-19823479 | Msa0154960:CDS | 30.0% | |
! | AATTTTGCAATATGGGAACT+TGG | - | chr1_4:19823739-19823758 | Msa0154960:intron | 30.0% |
ACTTAGGTGAAAATGACATT+GGG | + | chr1_4:19824259-19824278 | None:intergenic | 30.0% | |
AACTTAGGTGAAAATGACAT+TGG | + | chr1_4:19824260-19824279 | None:intergenic | 30.0% | |
GTTAGAAACTTAATACTTGC+CGG | + | chr1_4:19824350-19824369 | None:intergenic | 30.0% | |
! | TTTTATGACATGCTAGTACT+TGG | - | chr1_4:19824478-19824497 | Msa0154960:intron | 30.0% |
CAAACATTATCTCACTTAGT+GGG | - | chr1_4:19824642-19824661 | Msa0154960:intron | 30.0% | |
AAACATTATCTCACTTAGTG+GGG | - | chr1_4:19824643-19824662 | Msa0154960:intron | 30.0% | |
GAAAATAGGATTAAGTGGTT+TGG | + | chr1_4:19824862-19824881 | None:intergenic | 30.0% | |
TTGTGGAAAATAGGATTAAG+TGG | + | chr1_4:19824867-19824886 | None:intergenic | 30.0% | |
CAACATTGTAGATATAGTTG+GGG | + | chr1_4:19824910-19824929 | None:intergenic | 30.0% | |
GACAACATTGTAGATATAGT+TGG | + | chr1_4:19824912-19824931 | None:intergenic | 30.0% | |
! | GTCAGAAAAACGATGTTTTA+TGG | + | chr1_4:19825043-19825062 | None:intergenic | 30.0% |
!! | ATCATCTTATTCAAGTTGGA+TGG | + | chr1_4:19825147-19825166 | None:intergenic | 30.0% |
AGCAAGACGAAAAATAACTT+GGG | + | chr1_4:19825210-19825229 | None:intergenic | 30.0% | |
AAGCAAGACGAAAAATAACT+TGG | + | chr1_4:19825211-19825230 | None:intergenic | 30.0% | |
GAGTTATGACTACAGATAAA+TGG | - | chr1_4:19825484-19825503 | Msa0154960:intron | 30.0% | |
!!! | TAGCTATTGACTTGAGATTT+TGG | - | chr1_4:19825557-19825576 | Msa0154960:intron | 30.0% |
CTGAAGTTGTTGAAATTTAC+AGG | + | chr1_4:19825873-19825892 | None:intergenic | 30.0% | |
! | TGTGGTAATGAATCTTTGTT+TGG | + | chr1_4:19825979-19825998 | None:intergenic | 30.0% |
ATTACTAACTATATCTCCCT+TGG | - | chr1_4:19826051-19826070 | Msa0154960:intron | 30.0% | |
AAAACAACCAACATTACCAA+GGG | + | chr1_4:19826070-19826089 | None:intergenic | 30.0% | |
AAAAACAACCAACATTACCA+AGG | + | chr1_4:19826071-19826090 | None:intergenic | 30.0% | |
!!! | TTGTTTTGATTGTTGCTGTT+TGG | + | chr1_4:19826385-19826404 | None:intergenic | 30.0% |
TGCATGAACAACTCAATGAT+TGG | + | chr1_4:19822928-19822947 | None:intergenic | 35.0% | |
TTGTTCATGCATGACATTCT+TGG | - | chr1_4:19822937-19822956 | Msa0154960:CDS | 35.0% | |
TTGGAATGTTGAATCCAACT+GGG | + | chr1_4:19823038-19823057 | None:intergenic | 35.0% | |
GGATTAACACCATTTGCATT+AGG | + | chr1_4:19823078-19823097 | None:intergenic | 35.0% | |
GGTGTTAATCCTACTGTTAA+TGG | - | chr1_4:19823087-19823106 | Msa0154960:CDS | 35.0% | |
TTAACATCTCAACCAGAGTT+AGG | - | chr1_4:19823258-19823277 | Msa0154960:CDS | 35.0% | |
ACAATTTGTGAACCTAACTC+TGG | + | chr1_4:19823273-19823292 | None:intergenic | 35.0% | |
GAGTTAGGTTCACAAATTGT+TGG | - | chr1_4:19823273-19823292 | Msa0154960:CDS | 35.0% | |
AGGTTCACAAATTGTTGGAA+AGG | - | chr1_4:19823278-19823297 | Msa0154960:CDS | 35.0% | |
GGTTCACAAATTGTTGGAAA+GGG | - | chr1_4:19823279-19823298 | Msa0154960:CDS | 35.0% | |
!! | TTTACAGCACTTTTTGAAGG+AGG | - | chr1_4:19823354-19823373 | Msa0154960:CDS | 35.0% |
!! | TTACAGCACTTTTTGAAGGA+GGG | - | chr1_4:19823355-19823374 | Msa0154960:CDS | 35.0% |
AAGTACTATGTCGCGATTAT+CGG | - | chr1_4:19823422-19823441 | Msa0154960:CDS | 35.0% | |
GGGAAGTTTAAGTATGCTAA+AGG | - | chr1_4:19823459-19823478 | Msa0154960:CDS | 35.0% | |
!! | GAAGTACTGATGAGTATTGT+TGG | - | chr1_4:19823566-19823585 | Msa0154960:CDS | 35.0% |
GTATTGTTGGTGTATTGTGA+AGG | - | chr1_4:19823579-19823598 | Msa0154960:CDS | 35.0% | |
! | TACGGACTTCACTTTGAAAA+TGG | - | chr1_4:19823823-19823842 | Msa0154960:intron | 35.0% |
TTCTTTGGGTGAAAGATGTT+TGG | - | chr1_4:19824088-19824107 | Msa0154960:intron | 35.0% | |
! | ATGCTACTTGCATTGAATAG+TGG | + | chr1_4:19824121-19824140 | None:intergenic | 35.0% |
CTTAGGTGAAAATGACATTG+GGG | + | chr1_4:19824258-19824277 | None:intergenic | 35.0% | |
CCACTAAGTGAGATAATGTT+TGG | + | chr1_4:19824644-19824663 | None:intergenic | 35.0% | |
CCAAACATTATCTCACTTAG+TGG | - | chr1_4:19824641-19824660 | Msa0154960:intron | 35.0% | |
ACGAGAATAAAGTAAGTGTG+CGG | + | chr1_4:19824991-19825010 | None:intergenic | 35.0% | |
CACTTACTTTATTCTCGTGT+TGG | - | chr1_4:19824993-19825012 | Msa0154960:intron | 35.0% | |
!! | TTATGGAAAAGAGTATTGGG+CGG | + | chr1_4:19825026-19825045 | None:intergenic | 35.0% |
!! | TTCAAGTTGGATGGTTGAAA+TGG | + | chr1_4:19825138-19825157 | None:intergenic | 35.0% |
GGTTCTGTGTAGAAATTCAT+TGG | + | chr1_4:19825686-19825705 | None:intergenic | 35.0% | |
! | TGAATCTTTGTTTGGATGAG+TGG | + | chr1_4:19825971-19825990 | None:intergenic | 35.0% |
ACTTGGAAAAAAGATGGCTA+TGG | - | chr1_4:19826027-19826046 | Msa0154960:intron | 35.0% | |
CTTGGAAAAAAGATGGCTAT+GGG | - | chr1_4:19826028-19826047 | Msa0154960:intron | 35.0% | |
!! | TATATCTCCCTTGGTAATGT+TGG | - | chr1_4:19826060-19826079 | Msa0154960:intron | 35.0% |
TGCATGAACAACTCAATGAT+TGG | + | chr1_4:19822928-19822947 | None:intergenic | 35.0% | |
TTGTTCATGCATGACATTCT+TGG | - | chr1_4:19822937-19822956 | Msa0154960:CDS | 35.0% | |
CAACAATCAAAACAATGCTC+AGG | - | chr1_4:19826390-19826409 | Msa0154960:CDS | 35.0% | |
ACTAACATCTCAACCTGAAT+TGG | - | chr1_4:19826474-19826493 | Msa0154960:CDS | 35.0% | |
CTAACATCTCAACCTGAATT+GGG | - | chr1_4:19826475-19826494 | Msa0154960:CDS | 35.0% | |
AATTGGGTTCTCAAATGGTT+GGG | - | chr1_4:19826491-19826510 | Msa0154960:CDS | 35.0% | |
! | GGAGATAGCTTGAACTTTTA+TGG | - | chr1_4:19826601-19826620 | Msa0154960:CDS | 35.0% |
TATTACAGATAATCGCGACA+TGG | + | chr1_4:19826647-19826666 | None:intergenic | 35.0% | |
ATGTCGCGATTATCTGTAAT+AGG | - | chr1_4:19826646-19826665 | Msa0154960:CDS | 35.0% | |
! | TTATCTGTAATAGGAGGTAC+AGG | - | chr1_4:19826655-19826674 | Msa0154960:CDS | 35.0% |
AGGAAAGTTCAAGAATGCAA+GGG | - | chr1_4:19826675-19826694 | Msa0154960:CDS | 35.0% | |
! | AATGATTGGTTCCTTTCCTG+TGG | + | chr1_4:19822914-19822933 | None:intergenic | 40.0% |
TTCATGCATGACATTCTTGG+TGG | - | chr1_4:19822940-19822959 | Msa0154960:CDS | 40.0% | |
TGGAATGTTGAATCCAACTG+GGG | + | chr1_4:19823037-19823056 | None:intergenic | 40.0% | |
CTTGGAATGTTGAATCCAAC+TGG | + | chr1_4:19823039-19823058 | None:intergenic | 40.0% | |
ATGCCAATCCCTAATGCAAA+TGG | - | chr1_4:19823066-19823085 | Msa0154960:CDS | 40.0% | |
ACACCATTTGCATTAGGGAT+TGG | + | chr1_4:19823072-19823091 | None:intergenic | 40.0% | |
CCAGTAACACCATTAACAGT+AGG | + | chr1_4:19823099-19823118 | None:intergenic | 40.0% | |
!! | CCTACTGTTAATGGTGTTAC+TGG | - | chr1_4:19823096-19823115 | Msa0154960:CDS | 40.0% |
CAGCTAAACCAGTTCCTAAA+GGG | + | chr1_4:19823125-19823144 | None:intergenic | 40.0% | |
AATCCTAATCCAAGTCCATC+AGG | + | chr1_4:19823210-19823229 | None:intergenic | 40.0% | |
! | GATGGACTTGGATTAGGATT+TGG | - | chr1_4:19823210-19823229 | Msa0154960:CDS | 40.0% |
ACAAATTGTTGGAAAGGGTC+AGG | - | chr1_4:19823284-19823303 | Msa0154960:CDS | 40.0% | |
CAAATTGTTGGAAAGGGTCA+GGG | - | chr1_4:19823285-19823304 | Msa0154960:CDS | 40.0% | |
AAATTGTTGGAAAGGGTCAG+GGG | - | chr1_4:19823286-19823305 | Msa0154960:CDS | 40.0% | |
!! | TACAGCACTTTTTGAAGGAG+GGG | - | chr1_4:19823356-19823375 | Msa0154960:CDS | 40.0% |
CTACTTGCATTGAATAGTGG+AGG | + | chr1_4:19824118-19824137 | None:intergenic | 40.0% | |
!! | ACTTTGGGACAATTCAGACA+AGG | - | chr1_4:19824166-19824185 | Msa0154960:intron | 40.0% |
! | TTGTTATCGTCGTCGTCTTT+TGG | + | chr1_4:19824608-19824627 | None:intergenic | 40.0% |
AGTCATCTTACAAGCGATAC+AGG | + | chr1_4:19824781-19824800 | None:intergenic | 40.0% | |
GATGTGTGGTAAGACTAGAT+GGG | + | chr1_4:19824949-19824968 | None:intergenic | 40.0% | |
TAAAGTAAGTGTGCGGAGAT+GGG | + | chr1_4:19824984-19825003 | None:intergenic | 40.0% | |
ATAAAGTAAGTGTGCGGAGA+TGG | + | chr1_4:19824985-19825004 | None:intergenic | 40.0% | |
! | AGACAAGTCTTAGAAGCGTA+TGG | + | chr1_4:19825249-19825268 | None:intergenic | 40.0% |
TCTCAAGTCAATAGCTAGTG+TGG | + | chr1_4:19825554-19825573 | None:intergenic | 40.0% | |
! | GTGGATTGAAATGCAAGTCT+TGG | + | chr1_4:19825952-19825971 | None:intergenic | 40.0% |
! | AATGATTGGTTCTTTCCCTG+TGG | + | chr1_4:19826137-19826156 | None:intergenic | 40.0% |
TTCATGCATGACATTCTTGG+TGG | - | chr1_4:19822940-19822959 | Msa0154960:CDS | 40.0% | |
TTGTTGGGCAACATATACAG+TGG | - | chr1_4:19826217-19826236 | Msa0154960:CDS | 40.0% | |
AATCCTATTGGCGTAGCAAA+GGG | + | chr1_4:19826250-19826269 | None:intergenic | 40.0% | |
!! | TGTGGAGTGTTGAATCCTAT+TGG | + | chr1_4:19826262-19826281 | None:intergenic | 40.0% |
ATAGGATTCAACACTCCACA+AGG | - | chr1_4:19826262-19826281 | Msa0154960:intron | 40.0% | |
ATTCCCATCCCTAATGCAAA+TGG | - | chr1_4:19826289-19826308 | Msa0154960:intron | 40.0% | |
GGATAGCACCATTTGCATTA+GGG | + | chr1_4:19826300-19826319 | None:intergenic | 40.0% | |
ACCTGAATTGGGTTCTCAAA+TGG | - | chr1_4:19826486-19826505 | Msa0154960:CDS | 40.0% | |
ACCATTTGAGAACCCAATTC+AGG | + | chr1_4:19826490-19826509 | None:intergenic | 40.0% | |
GAATTGGGTTCTCAAATGGT+TGG | - | chr1_4:19826490-19826509 | Msa0154960:CDS | 40.0% | |
! | GAAAGCTCAAGGTGTTTATG+TGG | - | chr1_4:19826513-19826532 | Msa0154960:CDS | 40.0% |
!! | GTATTCACAGCCTTGTTTGA+AGG | - | chr1_4:19826568-19826587 | Msa0154960:CDS | 40.0% |
ATATTCCCCTCCTTCAAACA+AGG | + | chr1_4:19826581-19826600 | None:intergenic | 40.0% | |
TTGTTTGAAGGAGGGGAATA+TGG | - | chr1_4:19826580-19826599 | Msa0154960:CDS | 40.0% | |
TCGCGATTATCTGTAATAGG+AGG | - | chr1_4:19826649-19826668 | Msa0154960:CDS | 40.0% | |
CAGGAAAGTTCAAGAATGCA+AGG | - | chr1_4:19826674-19826693 | Msa0154960:CDS | 40.0% | |
GGAAAGTTCAAGAATGCAAG+GGG | - | chr1_4:19826676-19826695 | Msa0154960:CDS | 40.0% | |
GAAAGTTCAAGAATGCAAGG+GGG | - | chr1_4:19826677-19826696 | Msa0154960:CDS | 40.0% | |
ATTGATCCAATTGCAGCCAC+AGG | - | chr1_4:19822895-19822914 | Msa0154960:CDS | 45.0% | |
GTATATGTTGCCGAGCAAAC+CGG | + | chr1_4:19822992-19823011 | None:intergenic | 45.0% | |
TTGCTCGGCAACATATACAG+TGG | - | chr1_4:19822994-19823013 | Msa0154960:CDS | 45.0% | |
AATCCAACTGGGGTTGCAAA+GGG | + | chr1_4:19823027-19823046 | None:intergenic | 45.0% | |
! | GGGATTGGCATACTATCACT+TGG | + | chr1_4:19823057-19823076 | None:intergenic | 45.0% |
!! | GGTGTTACTGGTATCCCTTT+AGG | - | chr1_4:19823108-19823127 | Msa0154960:CDS | 45.0% |
! | ACTGGTATCCCTTTAGGAAC+TGG | - | chr1_4:19823114-19823133 | Msa0154960:CDS | 45.0% |
CCAGCTAAACCAGTTCCTAA+AGG | + | chr1_4:19823126-19823145 | None:intergenic | 45.0% | |
! | CCTTTAGGAACTGGTTTAGC+TGG | - | chr1_4:19823123-19823142 | Msa0154960:CDS | 45.0% |
CAGTTAACGTTAGGACCTGA+TGG | - | chr1_4:19823192-19823211 | Msa0154960:CDS | 45.0% | |
AATTGTTGGAAAGGGTCAGG+GGG | - | chr1_4:19823287-19823306 | Msa0154960:CDS | 45.0% | |
TATGTAGCAAGTTCGGCTGA+CGG | - | chr1_4:19823312-19823331 | Msa0154960:CDS | 45.0% | |
!! | CTTTTTGAAGGAGGGGAGTA+TGG | - | chr1_4:19823363-19823382 | Msa0154960:CDS | 45.0% |
! | ATGTCGCGATTATCGGTTGT+AGG | - | chr1_4:19823429-19823448 | Msa0154960:CDS | 45.0% |
! | ATTATCGGTTGTAGGAGGGA+CGG | - | chr1_4:19823437-19823456 | Msa0154960:CDS | 45.0% |
! | ATGGTGCTGAGACTTTGTTG+AGG | - | chr1_4:19823529-19823548 | Msa0154960:CDS | 45.0% |
! | TGAAGGTGTGTGAAAGCATG+TGG | - | chr1_4:19823596-19823615 | Msa0154960:CDS | 45.0% |
! | GAAGGTGTGTGAAAGCATGT+GGG | - | chr1_4:19823597-19823616 | Msa0154960:CDS | 45.0% |
GCAATATGGGAACTTGGCTT+TGG | - | chr1_4:19823745-19823764 | Msa0154960:intron | 45.0% | |
GGACAATTCAGACAAGGCAT+AGG | - | chr1_4:19824172-19824191 | Msa0154960:intron | 45.0% | |
ATCGCAAGATCTCATGCATG+AGG | - | chr1_4:19824201-19824220 | Msa0154960:intron | 45.0% | |
TCAACTTTCTGTGCATCGCT+AGG | + | chr1_4:19824506-19824525 | None:intergenic | 45.0% | |
GGATGTGTGGTAAGACTAGA+TGG | + | chr1_4:19824950-19824969 | None:intergenic | 45.0% | |
AAAGTAAGTGTGCGGAGATG+GGG | + | chr1_4:19824983-19825002 | None:intergenic | 45.0% | |
TGACAAGTCAGCAACATGAG+AGG | + | chr1_4:19825602-19825621 | None:intergenic | 45.0% | |
GTGGCGTTGTTGAGATCTAA+TGG | + | chr1_4:19825804-19825823 | None:intergenic | 45.0% | |
TTGATCCTATTGCAGCCACA+GGG | - | chr1_4:19826119-19826138 | Msa0154960:CDS | 45.0% | |
TCTTGGTGGAAGTAACCCAA+CGG | - | chr1_4:19826177-19826196 | Msa0154960:CDS | 45.0% | |
!! | TCGACCTGTAACTGGTTTGT+TGG | - | chr1_4:19826201-19826220 | Msa0154960:CDS | 45.0% |
!! | CGACCTGTAACTGGTTTGTT+GGG | - | chr1_4:19826202-19826221 | Msa0154960:CDS | 45.0% |
TTGCCCAACAAACCAGTTAC+AGG | + | chr1_4:19826208-19826227 | None:intergenic | 45.0% | |
GAATCCTATTGGCGTAGCAA+AGG | + | chr1_4:19826251-19826270 | None:intergenic | 45.0% | |
GATTCAACACTCCACAAGGT+GGG | - | chr1_4:19826266-19826285 | Msa0154960:intron | 45.0% | |
GCACCATTTGCATTAGGGAT+GGG | + | chr1_4:19826295-19826314 | None:intergenic | 45.0% | |
AGCACCATTTGCATTAGGGA+TGG | + | chr1_4:19826296-19826315 | None:intergenic | 45.0% | |
GGGATAGCACCATTTGCATT+AGG | + | chr1_4:19826301-19826320 | None:intergenic | 45.0% | |
GATACCGGTAACACCATTGA+CGG | + | chr1_4:19826326-19826345 | None:intergenic | 45.0% | |
TATCCCATTAGGAACTGGCT+TGG | - | chr1_4:19826342-19826361 | Msa0154960:CDS | 45.0% | |
!! | GTTTGGTGCAAACGAAGTAC+CGG | + | chr1_4:19826368-19826387 | None:intergenic | 45.0% |
AACAATGCTCAGGTGCAGTT+AGG | - | chr1_4:19826400-19826419 | Msa0154960:CDS | 45.0% | |
AATCCTAGTCCAAGTCCATC+AGG | + | chr1_4:19826427-19826446 | None:intergenic | 45.0% | |
! | GATGGACTTGGACTAGGATT+TGG | - | chr1_4:19826427-19826446 | Msa0154960:CDS | 45.0% |
CAAATGGTTGGGAAAGCTCA+AGG | - | chr1_4:19826502-19826521 | Msa0154960:CDS | 45.0% | |
!! | TTCACAGCCTTGTTTGAAGG+AGG | - | chr1_4:19826571-19826590 | Msa0154960:CDS | 45.0% |
!! | TCACAGCCTTGTTTGAAGGA+GGG | - | chr1_4:19826572-19826591 | Msa0154960:CDS | 45.0% |
!!! | ATATTTTTTTAAAATAGAAT+TGG | - | chr1_4:19825748-19825767 | Msa0154960:intron | 5.0% |
TCCAATTGCAGCCACAGGAA+AGG | - | chr1_4:19822900-19822919 | Msa0154960:CDS | 50.0% | |
TCCTTTCCTGTGGCTGCAAT+TGG | + | chr1_4:19822904-19822923 | None:intergenic | 50.0% | |
! | TCTTGGTGGCAGTAACCCAA+CGG | - | chr1_4:19822954-19822973 | Msa0154960:CDS | 50.0% |
GAATCCAACTGGGGTTGCAA+AGG | + | chr1_4:19823028-19823047 | None:intergenic | 50.0% | |
!! | ACGTTAGGACCTGATGGACT+TGG | - | chr1_4:19823198-19823217 | Msa0154960:CDS | 50.0% |
!! | GGACCTGATGGACTTGGATT+AGG | - | chr1_4:19823204-19823223 | Msa0154960:CDS | 50.0% |
! | GGGGGTGTATGTAGCAAGTT+CGG | - | chr1_4:19823305-19823324 | Msa0154960:CDS | 50.0% |
ATGTAGCAAGTTCGGCTGAC+GGG | - | chr1_4:19823313-19823332 | Msa0154960:CDS | 50.0% | |
TGACGGGAGTAGACAGATGA+TGG | - | chr1_4:19823329-19823348 | Msa0154960:CDS | 50.0% | |
! | TCGCGATTATCGGTTGTAGG+AGG | - | chr1_4:19823432-19823451 | Msa0154960:CDS | 50.0% |
! | CGCGATTATCGGTTGTAGGA+GGG | - | chr1_4:19823433-19823452 | Msa0154960:CDS | 50.0% |
! | TTATCGGTTGTAGGAGGGAC+GGG | - | chr1_4:19823438-19823457 | Msa0154960:CDS | 50.0% |
CTGAGACCTCTTATTCCACC+TGG | - | chr1_4:19823492-19823511 | Msa0154960:CDS | 50.0% | |
ACCTCTTATTCCACCTGGAC+AGG | - | chr1_4:19823497-19823516 | Msa0154960:CDS | 50.0% | |
ACCTGTCCAGGTGGAATAAG+AGG | + | chr1_4:19823501-19823520 | None:intergenic | 50.0% | |
CACTTAGTGGGGCAACTACA+TGG | - | chr1_4:19824654-19824673 | Msa0154960:intron | 50.0% | |
GGGATGTTGTGTTGGATGTG+TGG | + | chr1_4:19824963-19824982 | None:intergenic | 50.0% | |
GTTGGAGTGGTTGTGATGCA+TGG | + | chr1_4:19825902-19825921 | None:intergenic | 50.0% | |
GTTGATCCTATTGCAGCCAC+AGG | - | chr1_4:19826118-19826137 | Msa0154960:CDS | 50.0% | |
TCTTTCCCTGTGGCTGCAAT+AGG | + | chr1_4:19826127-19826146 | None:intergenic | 50.0% | |
GGATTCAACACTCCACAAGG+TGG | - | chr1_4:19826265-19826284 | Msa0154960:intron | 50.0% | |
! | GGTGTTACCGGTATCCCATT+AGG | - | chr1_4:19826331-19826350 | Msa0154960:CDS | 50.0% |
ACCGGTATCCCATTAGGAAC+TGG | - | chr1_4:19826337-19826356 | Msa0154960:CDS | 50.0% | |
GCCAGTTCCTAATGGGATAC+CGG | + | chr1_4:19826341-19826360 | None:intergenic | 50.0% | |
!! | CAGTTAGGACCTGATGGACT+TGG | - | chr1_4:19826415-19826434 | Msa0154960:CDS | 50.0% |
TATGTGGCCAGTTCAGCAGA+TGG | - | chr1_4:19826529-19826548 | Msa0154960:intron | 50.0% | |
ATGTGGCCAGTTCAGCAGAT+GGG | - | chr1_4:19826530-19826549 | Msa0154960:intron | 50.0% | |
AGATGGGAGCAGACAGATGA+TGG | - | chr1_4:19826546-19826565 | Msa0154960:intron | 50.0% | |
!! | CACAGCCTTGTTTGAAGGAG+GGG | - | chr1_4:19826573-19826592 | Msa0154960:CDS | 50.0% |
ATCTGTCCTGGTGGGATAAG+AGG | + | chr1_4:19826718-19826737 | None:intergenic | 50.0% | |
CAGCAATGTCTCTGCACCAT+CGG | + | chr1_4:19826746-19826765 | None:intergenic | 50.0% | |
ATGGTGCAGAGACATTGCTG+AGG | - | chr1_4:19826746-19826765 | Msa0154960:CDS | 50.0% | |
GTACCCTTTGCAACCCCAGT+TGG | - | chr1_4:19823021-19823040 | Msa0154960:CDS | 55.0% | |
! | TATCGGTTGTAGGAGGGACG+GGG | - | chr1_4:19823439-19823458 | Msa0154960:CDS | 55.0% |
TCAGTAGCAACCTGTCCAGG+TGG | + | chr1_4:19823510-19823529 | None:intergenic | 55.0% | |
CCATCAGTAGCAACCTGTCC+AGG | + | chr1_4:19823513-19823532 | None:intergenic | 55.0% | |
CCTGGACAGGTTGCTACTGA+TGG | - | chr1_4:19823510-19823529 | Msa0154960:CDS | 55.0% | |
CGGAGATGGGGATGTTGTGT+TGG | + | chr1_4:19824971-19824990 | None:intergenic | 55.0% | |
! | GAATGAAGGGCGTGTTGGAG+TGG | + | chr1_4:19825915-19825934 | None:intergenic | 55.0% |
! | AGAGGGAATGAAGGGCGTGT+TGG | + | chr1_4:19825920-19825939 | None:intergenic | 55.0% |
CAGTTACAGGTCGAGCCGTT+GGG | + | chr1_4:19826195-19826214 | None:intergenic | 55.0% | |
!! | TTGGCGTAGCAAAGGGCACT+TGG | + | chr1_4:19826243-19826262 | None:intergenic | 55.0% |
GTGCCCTTTGCTACGCCAAT+AGG | - | chr1_4:19826244-19826263 | Msa0154960:intron | 55.0% | |
CGGTAACACCATTGACGGTG+GGG | + | chr1_4:19826321-19826340 | None:intergenic | 55.0% | |
CCGGTAACACCATTGACGGT+GGG | + | chr1_4:19826322-19826341 | None:intergenic | 55.0% | |
!! | CCCACCGTCAATGGTGTTAC+CGG | - | chr1_4:19826319-19826338 | Msa0154960:CDS | 55.0% |
ACCGGTAACACCATTGACGG+TGG | + | chr1_4:19826323-19826342 | None:intergenic | 55.0% | |
CGGCCAAGCCAGTTCCTAAT+GGG | + | chr1_4:19826348-19826367 | None:intergenic | 55.0% | |
!! | CCATTAGGAACTGGCTTGGC+CGG | - | chr1_4:19826346-19826365 | Msa0154960:CDS | 55.0% |
CAGGTGCAGTTAGGACCTGA+TGG | - | chr1_4:19826409-19826428 | Msa0154960:CDS | 55.0% | |
!! | GGACCTGATGGACTTGGACT+AGG | - | chr1_4:19826421-19826440 | Msa0154960:CDS | 55.0% |
TCTGCTCCCATCTGCTGAAC+TGG | + | chr1_4:19826539-19826558 | None:intergenic | 55.0% | |
CTGAGACCTCTTATCCCACC+AGG | - | chr1_4:19826709-19826728 | Msa0154960:CDS | 55.0% | |
CAATGTCTCTGCACCATCGG+TGG | + | chr1_4:19826743-19826762 | None:intergenic | 55.0% | |
!! | CGACCAGTGACCGGTTTGCT+CGG | - | chr1_4:19822979-19822998 | Msa0154960:CDS | 60.0% |
TTGCCGAGCAAACCGGTCAC+TGG | + | chr1_4:19822985-19823004 | None:intergenic | 60.0% | |
CCAGTTACAGGTCGAGCCGT+TGG | + | chr1_4:19826196-19826215 | None:intergenic | 60.0% | |
CCAACGGCTCGACCTGTAAC+TGG | - | chr1_4:19826193-19826212 | Msa0154960:CDS | 60.0% | |
GGGATGGGAATCCCACCTTG+TGG | + | chr1_4:19826280-19826299 | None:intergenic | 60.0% | |
! | GGTGCTATCCCCACCGTCAA+TGG | - | chr1_4:19826310-19826329 | Msa0154960:intron | 60.0% |
CCGGCCAAGCCAGTTCCTAA+TGG | + | chr1_4:19826349-19826368 | None:intergenic | 60.0% | |
CGGTGGCAATCTGTCCTGGT+GGG | + | chr1_4:19826726-19826745 | None:intergenic | 60.0% | |
TCGGTGGCAATCTGTCCTGG+TGG | + | chr1_4:19826727-19826746 | None:intergenic | 60.0% | |
CCATCGGTGGCAATCTGTCC+TGG | + | chr1_4:19826730-19826749 | None:intergenic | 60.0% | |
CCAGGACAGATTGCCACCGA+TGG | - | chr1_4:19826727-19826746 | Msa0154960:CDS | 60.0% | |
CGGTCACTGGTCGAGCCGTT+GGG | + | chr1_4:19822972-19822991 | None:intergenic | 65.0% | |
CCAACGGCTCGACCAGTGAC+CGG | - | chr1_4:19822970-19822989 | Msa0154960:CDS | 65.0% | |
CCGGTCACTGGTCGAGCCGT+TGG | + | chr1_4:19822973-19822992 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 19822874 | 19826792 | 19822874 | ID=Msa0154960;Name=Msa0154960 |
chr1_4 | mRNA | 19822874 | 19826792 | 19822874 | ID=Msa0154960-mRNA-1;Parent=Msa0154960;Name=Msa0154960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0.25|4|0|452 |
chr1_4 | exon | 19826549 | 19826792 | 19826549 | ID=Msa0154960-mRNA-1:exon:7307;Parent=Msa0154960-mRNA-1 |
chr1_4 | exon | 19826316 | 19826536 | 19826316 | ID=Msa0154960-mRNA-1:exon:7306;Parent=Msa0154960-mRNA-1 |
chr1_4 | exon | 19826109 | 19826249 | 19826109 | ID=Msa0154960-mRNA-1:exon:7305;Parent=Msa0154960-mRNA-1 |
chr1_4 | exon | 19822874 | 19823626 | 19822874 | ID=Msa0154960-mRNA-1:exon:7304;Parent=Msa0154960-mRNA-1 |
chr1_4 | CDS | 19826549 | 19826792 | 19826549 | ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1 |
chr1_4 | CDS | 19826316 | 19826536 | 19826316 | ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1 |
chr1_4 | CDS | 19826109 | 19826249 | 19826109 | ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1 |
chr1_4 | CDS | 19822874 | 19823626 | 19822874 | ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1 |
Gene Sequence |
Protein sequence |