AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154960 MtrunA17_Chr1g0169291 98.000 250 5 0 203 452 1 250 3.47e-173 485
Msa0154960 MtrunA17_Chr1g0169291 76.754 228 25 3 4 205 23 248 4.10e-106 315
Msa0154960 MtrunA17_Chr1g0169511 98.000 250 5 0 203 452 1 250 2.08e-172 483
Msa0154960 MtrunA17_Chr1g0169511 76.754 228 25 3 4 205 23 248 7.19e-112 329
Msa0154960 MtrunA17_Chr1g0169281 84.677 248 36 1 207 452 9 256 6.64e-141 404
Msa0154960 MtrunA17_Chr1g0169281 84.848 231 9 2 1 205 24 254 6.09e-120 350
Msa0154960 MtrunA17_Chr1g0212861 40.426 235 121 5 237 452 119 353 2.18e-39 145
Msa0154960 MtrunA17_Chr1g0212861 34.322 236 106 6 16 205 119 351 1.48e-24 104
Msa0154960 MtrunA17_Chr4g0030731 42.478 226 120 4 237 452 78 303 2.53e-39 144
Msa0154960 MtrunA17_Chr4g0030731 36.283 226 100 5 16 202 78 298 9.60e-25 103
Msa0154960 MtrunA17_Chr4g0030681 44.053 227 114 5 237 452 80 304 2.93e-39 143
Msa0154960 MtrunA17_Chr4g0030681 36.283 226 99 5 16 202 80 299 1.06e-24 103
Msa0154960 MtrunA17_Chr7g0221601 39.754 244 114 8 231 450 153 387 4.33e-39 145
Msa0154960 MtrunA17_Chr7g0221601 33.594 256 104 8 2 205 146 387 6.88e-25 105
Msa0154960 MtrunA17_Chr4g0030671 32.979 282 170 8 184 450 3 280 1.14e-35 133
Msa0154960 MtrunA17_Chr4g0030671 33.333 225 110 7 18 205 59 280 1.53e-21 94.4
Msa0154960 MtrunA17_Chr1g0212871 32.367 207 110 5 241 442 51 232 6.37e-21 91.7
Msa0154960 MtrunA17_Chr1g0175911 36.697 109 66 2 320 425 62 170 9.01e-14 69.7
Msa0154960 MtrunA17_Chr4g0024951 35.345 116 66 3 338 450 66 175 2.36e-13 68.2
Msa0154960 MtrunA17_Chr7g0259071 42.553 94 52 2 336 427 76 169 3.51e-13 68.2
Msa0154960 MtrunA17_Chr4g0068381 35.955 89 56 1 336 423 66 154 7.75e-13 67.0
Msa0154960 MtrunA17_Chr4g0005111 41.111 90 52 1 338 426 78 167 9.75e-13 66.6
Msa0154960 MtrunA17_Chr7g0259091 40.000 95 55 2 335 427 78 172 1.25e-12 66.6
Msa0154960 MtrunA17_Chr3g0085321 37.963 108 64 2 320 424 57 164 1.34e-12 66.2
Msa0154960 MtrunA17_Chr4g0068391 38.000 100 59 3 330 427 60 158 1.64e-12 65.9
Msa0154960 MtrunA17_Chr4g0005011 31.624 117 73 2 337 452 86 196 2.93e-12 65.5
Msa0154960 MtrunA17_Chr4g0024961 40.909 88 51 1 338 424 66 153 4.64e-12 64.7
Msa0154960 MtrunA17_Chr3g0085301 34.579 107 67 2 321 424 63 169 5.57e-12 64.7
Msa0154960 MtrunA17_Chr7g0259101 40.000 95 55 2 335 427 78 172 1.19e-11 66.2
Msa0154960 MtrunA17_Chr7g0259101 40.000 95 55 2 335 427 277 371 1.35e-11 65.9
Msa0154960 MtrunA17_Chr3g0085311 39.362 94 56 1 337 429 76 169 1.33e-11 63.5
Msa0154960 MtrunA17_Chr4g0005131 39.362 94 56 1 337 429 78 171 2.46e-11 62.8
Msa0154960 MtrunA17_Chr7g0259121 39.175 97 53 2 336 427 76 171 4.08e-11 62.8
Msa0154960 MtrunA17_Chr3g0090231 32.110 109 73 1 317 424 52 160 7.57e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154960 AT4G13580.1 69.136 243 70 2 210 452 7 244 7.75e-111 327
Msa0154960 AT4G13580.1 58.874 231 62 4 1 205 19 242 9.83e-77 239
Msa0154960 AT3G24020.1 66.802 247 76 3 207 452 2 243 8.62e-111 327
Msa0154960 AT3G24020.1 58.009 231 64 4 1 205 18 241 6.82e-77 240
Msa0154960 AT1G07730.2 43.913 230 105 6 243 452 164 389 1.50e-43 157
Msa0154960 AT1G07730.2 39.556 225 94 7 22 205 164 387 2.48e-23 101
Msa0154960 AT2G28670.2 44.348 230 102 6 245 452 1 226 9.24e-42 148
Msa0154960 AT2G28670.2 39.111 225 93 7 24 205 1 224 2.61e-23 98.2
Msa0154960 AT2G28670.1 44.397 232 103 6 243 452 209 436 4.35e-41 152
Msa0154960 AT2G28670.1 39.207 227 94 7 22 205 209 434 4.81e-23 101
Msa0154960 AT2G39430.1 38.843 242 124 6 234 452 80 320 5.28e-38 141
Msa0154960 AT2G39430.1 35.146 239 109 6 13 205 80 318 9.06e-28 113
Msa0154960 AT3G55230.1 37.860 243 127 6 233 452 62 303 2.33e-37 139
Msa0154960 AT3G55230.1 36.667 240 106 7 12 205 62 301 2.44e-31 122
Msa0154960 AT1G65870.1 36.364 110 67 2 324 430 62 171 4.37e-14 71.2
Msa0154960 AT5G42510.1 41.304 92 53 1 334 424 69 160 2.42e-13 68.6
Msa0154960 AT3G13650.1 37.634 93 57 1 338 429 74 166 7.73e-13 67.4
Msa0154960 AT5G42500.1 38.710 93 56 1 336 427 74 166 1.74e-12 66.2
Msa0154960 AT3G58090.1 37.500 88 54 1 341 427 163 250 6.56e-12 66.2
Msa0154960 AT1G22900.1 39.773 88 52 1 338 424 84 171 6.01e-11 62.0

Find 154 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTGAAGGAGGGGAATA+TGG 0.272005 1_4:-19823064 Msa0154960:CDS
ACTAACATCTCAACCTGAAT+TGG 0.273439 1_4:-19823170 Msa0154960:CDS
TCCTTTCCTGTGGCTGCAAT+TGG 0.276263 1_4:+19826743 None:intergenic
CCTACTGTTAATGGTGTTAC+TGG 0.279068 1_4:-19826548 Msa0154960:intron
ACCATTTGAGAACCCAATTC+AGG 0.294933 1_4:+19823157 None:intergenic
TCTTTCCCTGTGGCTGCAAT+AGG 0.295887 1_4:+19823520 None:intergenic
GGATTAACACCATTTGCATT+AGG 0.297019 1_4:+19826569 None:intergenic
TCTGCTCCCATCTGCTGAAC+TGG 0.314904 1_4:+19823108 None:intergenic
AAGTACTATGTCGCGATTAT+CGG 0.316886 1_4:-19826222 Msa0154960:CDS
GGACCTGATGGACTTGGATT+AGG 0.319881 1_4:-19826440 Msa0154960:CDS
GGGATAGCACCATTTGCATT+AGG 0.322975 1_4:+19823346 None:intergenic
GATGGACTTGGATTAGGATT+TGG 0.351208 1_4:-19826434 Msa0154960:CDS
GATTAACACCATTTGCATTA+GGG 0.356622 1_4:+19826570 None:intergenic
GGTGTTAATCCTACTGTTAA+TGG 0.373730 1_4:-19826557 Msa0154960:CDS
GTGCCCTTTGCTACGCCAAT+AGG 0.374086 1_4:-19823400 Msa0154960:CDS
TTAACATCTCAACCAGAGTT+AGG 0.377354 1_4:-19826386 Msa0154960:CDS
GATGGACTTGGACTAGGATT+TGG 0.379130 1_4:-19823217 Msa0154960:CDS
GGATAGCACCATTTGCATTA+GGG 0.380996 1_4:+19823347 None:intergenic
TTGCCCAACAAACCAGTTAC+AGG 0.383511 1_4:+19823439 None:intergenic
CCAACGGCTCGACCTGTAAC+TGG 0.386025 1_4:-19823451 Msa0154960:CDS
TGATTGTTATTGTTATTGTT+TGG 0.402312 1_4:+19826485 None:intergenic
CCCACCGTCAATGGTGTTAC+CGG 0.405737 1_4:-19823325 Msa0154960:CDS
TCGACCTGTAACTGGTTTGT+TGG 0.407309 1_4:-19823443 Msa0154960:CDS
ATGTCGCGATTATCTGTAAT+AGG 0.409553 1_4:-19822998 Msa0154960:CDS
ACCTGAATTGGGTTCTCAAA+TGG 0.412760 1_4:-19823158 Msa0154960:CDS
CTTGGAATGTTGAATCCAAC+TGG 0.413683 1_4:+19826608 None:intergenic
ACAAATTGTTGGAAAGGGTC+AGG 0.415848 1_4:-19826360 Msa0154960:CDS
ACCTGTCCAGGTGGAATAAG+AGG 0.418722 1_4:+19826146 None:intergenic
ATCTGTCCTGGTGGGATAAG+AGG 0.419373 1_4:+19822929 None:intergenic
CCGGCCAAGCCAGTTCCTAA+TGG 0.422044 1_4:+19823298 None:intergenic
GGTGTTACCGGTATCCCATT+AGG 0.429831 1_4:-19823313 Msa0154960:CDS
TTGTTCATGCATGACATTCT+TGG 0.430091 1_4:-19823484 Msa0154960:CDS
TTGTTCATGCATGACATTCT+TGG 0.430091 1_4:-19826707 Msa0154960:CDS
CCTTTAGGAACTGGTTTAGC+TGG 0.430422 1_4:-19826521 Msa0154960:intron
CGACCTGTAACTGGTTTGTT+GGG 0.436040 1_4:-19823442 Msa0154960:CDS
TTATCGGTTGTAGGAGGGAC+GGG 0.439221 1_4:-19826206 Msa0154960:CDS
CACAGCCTTGTTTGAAGGAG+GGG 0.440382 1_4:-19823071 Msa0154960:CDS
CGGCCAAGCCAGTTCCTAAT+GGG 0.445570 1_4:+19823299 None:intergenic
CCGGTCACTGGTCGAGCCGT+TGG 0.445896 1_4:+19826674 None:intergenic
ACACCATTTGCATTAGGGAT+TGG 0.448404 1_4:+19826575 None:intergenic
ACCGGTATCCCATTAGGAAC+TGG 0.448563 1_4:-19823307 Msa0154960:CDS
ACCTCTTATTCCACCTGGAC+AGG 0.449379 1_4:-19826147 Msa0154960:CDS
AATTGGGTTCTCAAATGGTT+GGG 0.455097 1_4:-19823153 Msa0154960:CDS
CTAACATCTCAACCTGAATT+GGG 0.457016 1_4:-19823169 Msa0154960:CDS
GGAAGTTTAAGTATGCTAAA+GGG 0.460142 1_4:-19826184 Msa0154960:CDS
GGGAAGTTTAAGTATGCTAA+AGG 0.463071 1_4:-19826185 Msa0154960:CDS
GGTGCTATCCCCACCGTCAA+TGG 0.466899 1_4:-19823334 Msa0154960:CDS
CACGGTACTAGTATTTCAAA+TGG 0.467016 1_4:+19822867 None:intergenic
TGTGGAGTGTTGAATCCTAT+TGG 0.468305 1_4:+19823385 None:intergenic
CCATCGGTGGCAATCTGTCC+TGG 0.470378 1_4:+19822917 None:intergenic
AACAATGTTCAGTTAACGTT+AGG 0.471550 1_4:-19826461 Msa0154960:CDS
GTATTCACAGCCTTGTTTGA+AGG 0.475516 1_4:-19823076 Msa0154960:CDS
TATATCTCCCTTGGTAATGT+TGG 0.476134 1_4:-19823584 Msa0154960:CDS
GGTTCACAAATTGTTGGAAA+GGG 0.477487 1_4:-19826365 Msa0154960:CDS
TGCATGAACAACTCAATGAT+TGG 0.478315 1_4:+19823496 None:intergenic
TGCATGAACAACTCAATGAT+TGG 0.478315 1_4:+19826719 None:intergenic
CAGTTACAGGTCGAGCCGTT+GGG 0.481365 1_4:+19823452 None:intergenic
GAATTGGGTTCTCAAATGGT+TGG 0.482363 1_4:-19823154 Msa0154960:CDS
AACAATGCTCAGGTGCAGTT+AGG 0.485687 1_4:-19823244 Msa0154960:CDS
ATGCCAATCCCTAATGCAAA+TGG 0.485841 1_4:-19826578 Msa0154960:CDS
CGGTCACTGGTCGAGCCGTT+GGG 0.485879 1_4:+19826675 None:intergenic
CAAATTGTTGGAAAGGGTCA+GGG 0.488459 1_4:-19826359 Msa0154960:CDS
CCATTAGGAACTGGCTTGGC+CGG 0.489357 1_4:-19823298 Msa0154960:CDS
CCAGTTACAGGTCGAGCCGT+TGG 0.504256 1_4:+19823451 None:intergenic
AATCCTAATCCAAGTCCATC+AGG 0.506312 1_4:+19826437 None:intergenic
AATCCTAGTCCAAGTCCATC+AGG 0.508608 1_4:+19823220 None:intergenic
ATTCCCATCCCTAATGCAAA+TGG 0.509041 1_4:-19823355 Msa0154960:CDS
GAGTTAGGTTCACAAATTGT+TGG 0.509703 1_4:-19826371 Msa0154960:CDS
CGACCAGTGACCGGTTTGCT+CGG 0.510231 1_4:-19826665 Msa0154960:CDS
GGACCTGATGGACTTGGACT+AGG 0.513199 1_4:-19823223 Msa0154960:CDS
CCTGGACAGGTTGCTACTGA+TGG 0.513998 1_4:-19826134 Msa0154960:CDS
ATGTAGCAAGTTCGGCTGAC+GGG 0.514478 1_4:-19826331 Msa0154960:CDS
AGGTTCACAAATTGTTGGAA+AGG 0.517920 1_4:-19826366 Msa0154960:CDS
AGCACCATTTGCATTAGGGA+TGG 0.519741 1_4:+19823351 None:intergenic
ACGTTAGGACCTGATGGACT+TGG 0.520993 1_4:-19826446 Msa0154960:CDS
GCCAGTTCCTAATGGGATAC+CGG 0.525881 1_4:+19823306 None:intergenic
CCATCAGTAGCAACCTGTCC+AGG 0.527354 1_4:+19826134 None:intergenic
AATCCTATTGGCGTAGCAAA+GGG 0.527683 1_4:+19823397 None:intergenic
ATTACTAACTATATCTCCCT+TGG 0.528125 1_4:-19823593 Msa0154960:CDS
TCGCGATTATCGGTTGTAGG+AGG 0.528452 1_4:-19826212 Msa0154960:CDS
TTATCTGTAATAGGAGGTAC+AGG 0.528693 1_4:-19822989 Msa0154960:CDS
GAATCCAACTGGGGTTGCAA+AGG 0.532298 1_4:+19826619 None:intergenic
AGATGGGAGCAGACAGATGA+TGG 0.537603 1_4:-19823098 Msa0154960:CDS
GAATCCTATTGGCGTAGCAA+AGG 0.538440 1_4:+19823396 None:intergenic
CAGTTAGGACCTGATGGACT+TGG 0.539311 1_4:-19823229 Msa0154960:CDS
ACAATTTGTGAACCTAACTC+TGG 0.539499 1_4:+19826374 None:intergenic
ATGTCGCGATTATCGGTTGT+AGG 0.540679 1_4:-19826215 Msa0154960:CDS
GTATATGTTGCCGAGCAAAC+CGG 0.541501 1_4:+19826655 None:intergenic
TTCATGCATGACATTCTTGG+TGG 0.543393 1_4:-19826704 Msa0154960:CDS
GTTGATCCTATTGCAGCCAC+AGG 0.543729 1_4:-19823526 Msa0154960:CDS
GCACCATTTGCATTAGGGAT+GGG 0.543769 1_4:+19823352 None:intergenic
CTGAGACCTCTTATTCCACC+TGG 0.543896 1_4:-19826152 Msa0154960:CDS
CAGGTGCAGTTAGGACCTGA+TGG 0.543932 1_4:-19823235 Msa0154960:CDS
AATCCAACTGGGGTTGCAAA+GGG 0.544346 1_4:+19826620 None:intergenic
AATGATTGGTTCCTTTCCTG+TGG 0.544898 1_4:+19826733 None:intergenic
GGGATTGGCATACTATCACT+TGG 0.545050 1_4:+19826590 None:intergenic
TTGCCGAGCAAACCGGTCAC+TGG 0.546279 1_4:+19826662 None:intergenic
CAGCAATGTCTCTGCACCAT+CGG 0.547801 1_4:+19822901 None:intergenic
GGAAAGTTCAAGAATGCAAG+GGG 0.548640 1_4:-19822968 Msa0154960:CDS
CCGGTAACACCATTGACGGT+GGG 0.548993 1_4:+19823325 None:intergenic
CGCGATTATCGGTTGTAGGA+GGG 0.549189 1_4:-19826211 Msa0154960:CDS
GTACCCTTTGCAACCCCAGT+TGG 0.549320 1_4:-19826623 Msa0154960:CDS
TTGGCGTAGCAAAGGGCACT+TGG 0.550533 1_4:+19823404 None:intergenic
TTCACAGCCTTGTTTGAAGG+AGG 0.552103 1_4:-19823073 Msa0154960:CDS
GAAAGCTCAAGGTGTTTATG+TGG 0.553581 1_4:-19823131 Msa0154960:CDS
CAACAATCAAAACAATGCTC+AGG 0.557905 1_4:-19823254 Msa0154960:CDS
TTCATGCATGACATTCTTGG+TGG 0.560639 1_4:-19823481 Msa0154960:CDS
TCCAATTGCAGCCACAGGAA+AGG 0.562874 1_4:-19826744 Msa0154960:CDS
ATGTGGCCAGTTCAGCAGAT+GGG 0.562896 1_4:-19823114 Msa0154960:CDS
TATCCCATTAGGAACTGGCT+TGG 0.563120 1_4:-19823302 Msa0154960:CDS
TGACGGGAGTAGACAGATGA+TGG 0.563922 1_4:-19826315 Msa0154960:intron
GTTTGGTGCAAACGAAGTAC+CGG 0.565262 1_4:+19823279 None:intergenic
CAGGAAAGTTCAAGAATGCA+AGG 0.567749 1_4:-19822970 Msa0154960:CDS
ATTGATCCAATTGCAGCCAC+AGG 0.569919 1_4:-19826749 Msa0154960:CDS
GATACCGGTAACACCATTGA+CGG 0.571930 1_4:+19823321 None:intergenic
TCACAGCCTTGTTTGAAGGA+GGG 0.575570 1_4:-19823072 Msa0154960:CDS
CCAGGACAGATTGCCACCGA+TGG 0.577534 1_4:-19822917 Msa0154960:CDS
TATGTGGCCAGTTCAGCAGA+TGG 0.577572 1_4:-19823115 Msa0154960:CDS
CAAATGGTTGGGAAAGCTCA+AGG 0.578447 1_4:-19823142 Msa0154960:CDS
CCAGTAACACCATTAACAGT+AGG 0.579036 1_4:+19826548 None:intergenic
CAGTTAACGTTAGGACCTGA+TGG 0.580607 1_4:-19826452 Msa0154960:CDS
AAATTGTTGGAAAGGGTCAG+GGG 0.581072 1_4:-19826358 Msa0154960:CDS
TATGTAGCAAGTTCGGCTGA+CGG 0.590795 1_4:-19826332 Msa0154960:CDS
CGGTGGCAATCTGTCCTGGT+GGG 0.590855 1_4:+19822921 None:intergenic
CTGAGACCTCTTATCCCACC+AGG 0.596655 1_4:-19822935 Msa0154960:CDS
AATGATTGGTTCTTTCCCTG+TGG 0.602584 1_4:+19823510 None:intergenic
TATCGGTTGTAGGAGGGACG+GGG 0.603964 1_4:-19826205 Msa0154960:CDS
CCAACGGCTCGACCAGTGAC+CGG 0.606503 1_4:-19826674 Msa0154960:CDS
ACCGGTAACACCATTGACGG+TGG 0.606801 1_4:+19823324 None:intergenic
TCGGTGGCAATCTGTCCTGG+TGG 0.607409 1_4:+19822920 None:intergenic
ATATTCCCCTCCTTCAAACA+AGG 0.608813 1_4:+19823066 None:intergenic
TTGGAATGTTGAATCCAACT+GGG 0.618283 1_4:+19826609 None:intergenic
CAATGTCTCTGCACCATCGG+TGG 0.621063 1_4:+19822904 None:intergenic
ATTATCGGTTGTAGGAGGGA+CGG 0.632538 1_4:-19826207 Msa0154960:CDS
CGGTAACACCATTGACGGTG+GGG 0.636153 1_4:+19823326 None:intergenic
TCGCGATTATCTGTAATAGG+AGG 0.640067 1_4:-19822995 Msa0154960:CDS
AGGAAAGTTCAAGAATGCAA+GGG 0.644422 1_4:-19822969 Msa0154960:CDS
ATAGGATTCAACACTCCACA+AGG 0.647615 1_4:-19823382 Msa0154960:CDS
AAAACAACCAACATTACCAA+GGG 0.648351 1_4:+19823577 None:intergenic
GATTCAACACTCCACAAGGT+GGG 0.655383 1_4:-19823378 Msa0154960:CDS
TCTTGGTGGCAGTAACCCAA+CGG 0.656099 1_4:-19826690 Msa0154960:CDS
TCAGTAGCAACCTGTCCAGG+TGG 0.657359 1_4:+19826137 None:intergenic
AATTGTTGGAAAGGGTCAGG+GGG 0.661911 1_4:-19826357 Msa0154960:CDS
TTGATCCTATTGCAGCCACA+GGG 0.667498 1_4:-19823525 Msa0154960:CDS
GGATTCAACACTCCACAAGG+TGG 0.671295 1_4:-19823379 Msa0154960:CDS
GGGATGGGAATCCCACCTTG+TGG 0.684821 1_4:+19823367 None:intergenic
TTGTTGGGCAACATATACAG+TGG 0.686502 1_4:-19823427 Msa0154960:CDS
ATGGTGCTGAGACTTTGTTG+AGG 0.693982 1_4:-19826115 Msa0154960:CDS
TATTACAGATAATCGCGACA+TGG 0.703227 1_4:+19823000 None:intergenic
TCTTGGTGGAAGTAACCCAA+CGG 0.712556 1_4:-19823467 Msa0154960:CDS
TTGCTCGGCAACATATACAG+TGG 0.727097 1_4:-19826650 Msa0154960:CDS
TGGAATGTTGAATCCAACTG+GGG 0.746650 1_4:+19826610 None:intergenic
ATGGTGCAGAGACATTGCTG+AGG 0.778387 1_4:-19822898 Msa0154960:CDS
GAAAGTTCAAGAATGCAAGG+GGG 0.779865 1_4:-19822967 Msa0154960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTTTTATATATAAGATT+TGG - chr1_4:19825294-19825313 Msa0154960:intron 10.0%
!! AAAATTAACAACTAAATACA+AGG + chr1_4:19823725-19823744 None:intergenic 15.0%
!! AAATGGATAAATGAATAAAA+TGG - chr1_4:19823840-19823859 Msa0154960:intron 15.0%
!!! AAGATAAAATACTTTTTCTT+TGG - chr1_4:19824073-19824092 Msa0154960:intron 15.0%
!!! AGATAAAATACTTTTTCTTT+GGG - chr1_4:19824074-19824093 Msa0154960:intron 15.0%
!!! TATTAACAGAAGTTTTTTTA+GGG + chr1_4:19824395-19824414 None:intergenic 15.0%
!! TTCTGTTAATAGTTTAAATT+TGG - chr1_4:19824404-19824423 Msa0154960:intron 15.0%
!! TCTGTTAATAGTTTAAATTT+GGG - chr1_4:19824405-19824424 Msa0154960:intron 15.0%
!!! TCTAAGTAATTTTAAGAATT+TGG - chr1_4:19825459-19825478 Msa0154960:intron 15.0%
!!! ATAACAAAAGTATTTAGAAA+AGG - chr1_4:19825621-19825640 Msa0154960:intron 15.0%
!!! TGATTGTTATTGTTATTGTT+TGG + chr1_4:19823162-19823181 None:intergenic 20.0%
!!! TTTTATGGTTTGTATAAGAT+TGG - chr1_4:19823399-19823418 Msa0154960:CDS 20.0%
!! GATGATTATTATTATCAGTT+TGG - chr1_4:19823638-19823657 Msa0154960:intron 20.0%
!!! TAGTTGTTAATTTTGCAATA+TGG - chr1_4:19823731-19823750 Msa0154960:intron 20.0%
!!! AGTTGTTAATTTTGCAATAT+GGG - chr1_4:19823732-19823751 Msa0154960:intron 20.0%
!! GATTGCAGTAAATATTTAAT+TGG + chr1_4:19823963-19823982 None:intergenic 20.0%
!!! CTATTAACAGAAGTTTTTTT+AGG + chr1_4:19824396-19824415 None:intergenic 20.0%
!!! ATCTCATTGACTAATAAATT+TGG - chr1_4:19824528-19824547 Msa0154960:intron 20.0%
!! AAAACTATAAGAGAAACTAT+AGG + chr1_4:19824748-19824767 None:intergenic 20.0%
!! GTATAAATATTGTGGAAAAT+AGG + chr1_4:19824876-19824895 None:intergenic 20.0%
!! TTCCACAATATTTATACTAT+AGG - chr1_4:19824879-19824898 Msa0154960:intron 20.0%
!! GAATATTATATAACTCAATG+AGG + chr1_4:19825707-19825726 None:intergenic 20.0%
!!! AGAAATATTGACTACAATTT+TGG - chr1_4:19825829-19825848 Msa0154960:intron 20.0%
!!! TTTTATGGTTTGTATAAGAT+AGG - chr1_4:19823399-19823418 Msa0154960:CDS 20.0%
!! GGTGATAGTTTGAATTTTTA+TGG - chr1_4:19823384-19823403 Msa0154960:CDS 25.0%
!!! TTAGTTTGTTTGCATGTATT+TGG - chr1_4:19823673-19823692 Msa0154960:intron 25.0%
!! TGATGTATAAAGCACTAATA+CGG - chr1_4:19823805-19823824 Msa0154960:intron 25.0%
! ACAAAGTTATTCTTCAATAC+AGG - chr1_4:19824007-19824026 Msa0154960:intron 25.0%
!! ATGTTTTCAATTTCTTGAAC+TGG + chr1_4:19824039-19824058 None:intergenic 25.0%
! ATAGTTAAACTACATCACTT+TGG - chr1_4:19824150-19824169 Msa0154960:intron 25.0%
! TAGTTAAACTACATCACTTT+GGG - chr1_4:19824151-19824170 Msa0154960:intron 25.0%
!!! AAGTATGCACTTTTTAACTT+AGG + chr1_4:19824275-19824294 None:intergenic 25.0%
!!! AATAGTTTGTTTGATGTTAC+CGG - chr1_4:19824328-19824347 Msa0154960:intron 25.0%
!!! TAGTTTAAATTTGGGTTTTG+TGG - chr1_4:19824413-19824432 Msa0154960:intron 25.0%
! TAGAACAAAATGACGTATTT+CGG + chr1_4:19824681-19824700 None:intergenic 25.0%
!! TAATGAGTTGGATCTAAATA+TGG + chr1_4:19824711-19824730 None:intergenic 25.0%
! AGATTTATAGACTAATGAGT+TGG + chr1_4:19824723-19824742 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr1_4:19824751-19824770 Msa0154960:intron 25.0%
! AAGATGAATAGATCAAATAG+AGG + chr1_4:19824806-19824825 None:intergenic 25.0%
! CATCTTACTATAGAATCTAT+AGG - chr1_4:19824820-19824839 Msa0154960:intron 25.0%
! CACCTATAGTATAAATATTG+TGG + chr1_4:19824884-19824903 None:intergenic 25.0%
! ACAACATTGTAGATATAGTT+GGG + chr1_4:19824911-19824930 None:intergenic 25.0%
!!! GTTTTATGGAAAAGAGTATT+GGG + chr1_4:19825029-19825048 None:intergenic 25.0%
!!! TGTTTTATGGAAAAGAGTAT+TGG + chr1_4:19825030-19825049 None:intergenic 25.0%
!!! TTTTTTCACTTCAACTTAAG+TGG - chr1_4:19825075-19825094 Msa0154960:intron 25.0%
! GTAAATCATCTTATTCAAGT+TGG + chr1_4:19825151-19825170 None:intergenic 25.0%
!! TAGTCAATATTTCTGATAAG+TGG + chr1_4:19825823-19825842 None:intergenic 25.0%
! ATTATATAAGAGGGAATGAA+GGG + chr1_4:19825928-19825947 None:intergenic 25.0%
! TATTATATAAGAGGGAATGA+AGG + chr1_4:19825929-19825948 None:intergenic 25.0%
! AGTCTTGGTATTATATAAGA+GGG + chr1_4:19825937-19825956 None:intergenic 25.0%
! AAGTCTTGGTATTATATAAG+AGG + chr1_4:19825938-19825957 None:intergenic 25.0%
! TAGATACTAGTATTTCTTTG+TGG + chr1_4:19825997-19826016 None:intergenic 25.0%
! GTATCTATATCTGAAAAACT+TGG - chr1_4:19826010-19826029 Msa0154960:intron 25.0%
! TGAAAAACTTGGAAAAAAGA+TGG - chr1_4:19826021-19826040 Msa0154960:intron 25.0%
GATTAACACCATTTGCATTA+GGG + chr1_4:19823077-19823096 None:intergenic 30.0%
AACAATGTTCAGTTAACGTT+AGG - chr1_4:19823183-19823202 Msa0154960:CDS 30.0%
!! GTTTTTACAGCACTTTTTGA+AGG - chr1_4:19823351-19823370 Msa0154960:CDS 30.0%
GGAAGTTTAAGTATGCTAAA+GGG - chr1_4:19823460-19823479 Msa0154960:CDS 30.0%
! AATTTTGCAATATGGGAACT+TGG - chr1_4:19823739-19823758 Msa0154960:intron 30.0%
ACTTAGGTGAAAATGACATT+GGG + chr1_4:19824259-19824278 None:intergenic 30.0%
AACTTAGGTGAAAATGACAT+TGG + chr1_4:19824260-19824279 None:intergenic 30.0%
GTTAGAAACTTAATACTTGC+CGG + chr1_4:19824350-19824369 None:intergenic 30.0%
! TTTTATGACATGCTAGTACT+TGG - chr1_4:19824478-19824497 Msa0154960:intron 30.0%
CAAACATTATCTCACTTAGT+GGG - chr1_4:19824642-19824661 Msa0154960:intron 30.0%
AAACATTATCTCACTTAGTG+GGG - chr1_4:19824643-19824662 Msa0154960:intron 30.0%
GAAAATAGGATTAAGTGGTT+TGG + chr1_4:19824862-19824881 None:intergenic 30.0%
TTGTGGAAAATAGGATTAAG+TGG + chr1_4:19824867-19824886 None:intergenic 30.0%
CAACATTGTAGATATAGTTG+GGG + chr1_4:19824910-19824929 None:intergenic 30.0%
GACAACATTGTAGATATAGT+TGG + chr1_4:19824912-19824931 None:intergenic 30.0%
! GTCAGAAAAACGATGTTTTA+TGG + chr1_4:19825043-19825062 None:intergenic 30.0%
!! ATCATCTTATTCAAGTTGGA+TGG + chr1_4:19825147-19825166 None:intergenic 30.0%
AGCAAGACGAAAAATAACTT+GGG + chr1_4:19825210-19825229 None:intergenic 30.0%
AAGCAAGACGAAAAATAACT+TGG + chr1_4:19825211-19825230 None:intergenic 30.0%
GAGTTATGACTACAGATAAA+TGG - chr1_4:19825484-19825503 Msa0154960:intron 30.0%
!!! TAGCTATTGACTTGAGATTT+TGG - chr1_4:19825557-19825576 Msa0154960:intron 30.0%
CTGAAGTTGTTGAAATTTAC+AGG + chr1_4:19825873-19825892 None:intergenic 30.0%
! TGTGGTAATGAATCTTTGTT+TGG + chr1_4:19825979-19825998 None:intergenic 30.0%
ATTACTAACTATATCTCCCT+TGG - chr1_4:19826051-19826070 Msa0154960:intron 30.0%
AAAACAACCAACATTACCAA+GGG + chr1_4:19826070-19826089 None:intergenic 30.0%
AAAAACAACCAACATTACCA+AGG + chr1_4:19826071-19826090 None:intergenic 30.0%
!!! TTGTTTTGATTGTTGCTGTT+TGG + chr1_4:19826385-19826404 None:intergenic 30.0%
TGCATGAACAACTCAATGAT+TGG + chr1_4:19822928-19822947 None:intergenic 35.0%
TTGTTCATGCATGACATTCT+TGG - chr1_4:19822937-19822956 Msa0154960:CDS 35.0%
TTGGAATGTTGAATCCAACT+GGG + chr1_4:19823038-19823057 None:intergenic 35.0%
GGATTAACACCATTTGCATT+AGG + chr1_4:19823078-19823097 None:intergenic 35.0%
GGTGTTAATCCTACTGTTAA+TGG - chr1_4:19823087-19823106 Msa0154960:CDS 35.0%
TTAACATCTCAACCAGAGTT+AGG - chr1_4:19823258-19823277 Msa0154960:CDS 35.0%
ACAATTTGTGAACCTAACTC+TGG + chr1_4:19823273-19823292 None:intergenic 35.0%
GAGTTAGGTTCACAAATTGT+TGG - chr1_4:19823273-19823292 Msa0154960:CDS 35.0%
AGGTTCACAAATTGTTGGAA+AGG - chr1_4:19823278-19823297 Msa0154960:CDS 35.0%
GGTTCACAAATTGTTGGAAA+GGG - chr1_4:19823279-19823298 Msa0154960:CDS 35.0%
!! TTTACAGCACTTTTTGAAGG+AGG - chr1_4:19823354-19823373 Msa0154960:CDS 35.0%
!! TTACAGCACTTTTTGAAGGA+GGG - chr1_4:19823355-19823374 Msa0154960:CDS 35.0%
AAGTACTATGTCGCGATTAT+CGG - chr1_4:19823422-19823441 Msa0154960:CDS 35.0%
GGGAAGTTTAAGTATGCTAA+AGG - chr1_4:19823459-19823478 Msa0154960:CDS 35.0%
!! GAAGTACTGATGAGTATTGT+TGG - chr1_4:19823566-19823585 Msa0154960:CDS 35.0%
GTATTGTTGGTGTATTGTGA+AGG - chr1_4:19823579-19823598 Msa0154960:CDS 35.0%
! TACGGACTTCACTTTGAAAA+TGG - chr1_4:19823823-19823842 Msa0154960:intron 35.0%
TTCTTTGGGTGAAAGATGTT+TGG - chr1_4:19824088-19824107 Msa0154960:intron 35.0%
! ATGCTACTTGCATTGAATAG+TGG + chr1_4:19824121-19824140 None:intergenic 35.0%
CTTAGGTGAAAATGACATTG+GGG + chr1_4:19824258-19824277 None:intergenic 35.0%
CCACTAAGTGAGATAATGTT+TGG + chr1_4:19824644-19824663 None:intergenic 35.0%
CCAAACATTATCTCACTTAG+TGG - chr1_4:19824641-19824660 Msa0154960:intron 35.0%
ACGAGAATAAAGTAAGTGTG+CGG + chr1_4:19824991-19825010 None:intergenic 35.0%
CACTTACTTTATTCTCGTGT+TGG - chr1_4:19824993-19825012 Msa0154960:intron 35.0%
!! TTATGGAAAAGAGTATTGGG+CGG + chr1_4:19825026-19825045 None:intergenic 35.0%
!! TTCAAGTTGGATGGTTGAAA+TGG + chr1_4:19825138-19825157 None:intergenic 35.0%
GGTTCTGTGTAGAAATTCAT+TGG + chr1_4:19825686-19825705 None:intergenic 35.0%
! TGAATCTTTGTTTGGATGAG+TGG + chr1_4:19825971-19825990 None:intergenic 35.0%
ACTTGGAAAAAAGATGGCTA+TGG - chr1_4:19826027-19826046 Msa0154960:intron 35.0%
CTTGGAAAAAAGATGGCTAT+GGG - chr1_4:19826028-19826047 Msa0154960:intron 35.0%
!! TATATCTCCCTTGGTAATGT+TGG - chr1_4:19826060-19826079 Msa0154960:intron 35.0%
TGCATGAACAACTCAATGAT+TGG + chr1_4:19822928-19822947 None:intergenic 35.0%
TTGTTCATGCATGACATTCT+TGG - chr1_4:19822937-19822956 Msa0154960:CDS 35.0%
CAACAATCAAAACAATGCTC+AGG - chr1_4:19826390-19826409 Msa0154960:CDS 35.0%
ACTAACATCTCAACCTGAAT+TGG - chr1_4:19826474-19826493 Msa0154960:CDS 35.0%
CTAACATCTCAACCTGAATT+GGG - chr1_4:19826475-19826494 Msa0154960:CDS 35.0%
AATTGGGTTCTCAAATGGTT+GGG - chr1_4:19826491-19826510 Msa0154960:CDS 35.0%
! GGAGATAGCTTGAACTTTTA+TGG - chr1_4:19826601-19826620 Msa0154960:CDS 35.0%
TATTACAGATAATCGCGACA+TGG + chr1_4:19826647-19826666 None:intergenic 35.0%
ATGTCGCGATTATCTGTAAT+AGG - chr1_4:19826646-19826665 Msa0154960:CDS 35.0%
! TTATCTGTAATAGGAGGTAC+AGG - chr1_4:19826655-19826674 Msa0154960:CDS 35.0%
AGGAAAGTTCAAGAATGCAA+GGG - chr1_4:19826675-19826694 Msa0154960:CDS 35.0%
! AATGATTGGTTCCTTTCCTG+TGG + chr1_4:19822914-19822933 None:intergenic 40.0%
TTCATGCATGACATTCTTGG+TGG - chr1_4:19822940-19822959 Msa0154960:CDS 40.0%
TGGAATGTTGAATCCAACTG+GGG + chr1_4:19823037-19823056 None:intergenic 40.0%
CTTGGAATGTTGAATCCAAC+TGG + chr1_4:19823039-19823058 None:intergenic 40.0%
ATGCCAATCCCTAATGCAAA+TGG - chr1_4:19823066-19823085 Msa0154960:CDS 40.0%
ACACCATTTGCATTAGGGAT+TGG + chr1_4:19823072-19823091 None:intergenic 40.0%
CCAGTAACACCATTAACAGT+AGG + chr1_4:19823099-19823118 None:intergenic 40.0%
!! CCTACTGTTAATGGTGTTAC+TGG - chr1_4:19823096-19823115 Msa0154960:CDS 40.0%
CAGCTAAACCAGTTCCTAAA+GGG + chr1_4:19823125-19823144 None:intergenic 40.0%
AATCCTAATCCAAGTCCATC+AGG + chr1_4:19823210-19823229 None:intergenic 40.0%
! GATGGACTTGGATTAGGATT+TGG - chr1_4:19823210-19823229 Msa0154960:CDS 40.0%
ACAAATTGTTGGAAAGGGTC+AGG - chr1_4:19823284-19823303 Msa0154960:CDS 40.0%
CAAATTGTTGGAAAGGGTCA+GGG - chr1_4:19823285-19823304 Msa0154960:CDS 40.0%
AAATTGTTGGAAAGGGTCAG+GGG - chr1_4:19823286-19823305 Msa0154960:CDS 40.0%
!! TACAGCACTTTTTGAAGGAG+GGG - chr1_4:19823356-19823375 Msa0154960:CDS 40.0%
CTACTTGCATTGAATAGTGG+AGG + chr1_4:19824118-19824137 None:intergenic 40.0%
!! ACTTTGGGACAATTCAGACA+AGG - chr1_4:19824166-19824185 Msa0154960:intron 40.0%
! TTGTTATCGTCGTCGTCTTT+TGG + chr1_4:19824608-19824627 None:intergenic 40.0%
AGTCATCTTACAAGCGATAC+AGG + chr1_4:19824781-19824800 None:intergenic 40.0%
GATGTGTGGTAAGACTAGAT+GGG + chr1_4:19824949-19824968 None:intergenic 40.0%
TAAAGTAAGTGTGCGGAGAT+GGG + chr1_4:19824984-19825003 None:intergenic 40.0%
ATAAAGTAAGTGTGCGGAGA+TGG + chr1_4:19824985-19825004 None:intergenic 40.0%
! AGACAAGTCTTAGAAGCGTA+TGG + chr1_4:19825249-19825268 None:intergenic 40.0%
TCTCAAGTCAATAGCTAGTG+TGG + chr1_4:19825554-19825573 None:intergenic 40.0%
! GTGGATTGAAATGCAAGTCT+TGG + chr1_4:19825952-19825971 None:intergenic 40.0%
! AATGATTGGTTCTTTCCCTG+TGG + chr1_4:19826137-19826156 None:intergenic 40.0%
TTCATGCATGACATTCTTGG+TGG - chr1_4:19822940-19822959 Msa0154960:CDS 40.0%
TTGTTGGGCAACATATACAG+TGG - chr1_4:19826217-19826236 Msa0154960:CDS 40.0%
AATCCTATTGGCGTAGCAAA+GGG + chr1_4:19826250-19826269 None:intergenic 40.0%
!! TGTGGAGTGTTGAATCCTAT+TGG + chr1_4:19826262-19826281 None:intergenic 40.0%
ATAGGATTCAACACTCCACA+AGG - chr1_4:19826262-19826281 Msa0154960:intron 40.0%
ATTCCCATCCCTAATGCAAA+TGG - chr1_4:19826289-19826308 Msa0154960:intron 40.0%
GGATAGCACCATTTGCATTA+GGG + chr1_4:19826300-19826319 None:intergenic 40.0%
ACCTGAATTGGGTTCTCAAA+TGG - chr1_4:19826486-19826505 Msa0154960:CDS 40.0%
ACCATTTGAGAACCCAATTC+AGG + chr1_4:19826490-19826509 None:intergenic 40.0%
GAATTGGGTTCTCAAATGGT+TGG - chr1_4:19826490-19826509 Msa0154960:CDS 40.0%
! GAAAGCTCAAGGTGTTTATG+TGG - chr1_4:19826513-19826532 Msa0154960:CDS 40.0%
!! GTATTCACAGCCTTGTTTGA+AGG - chr1_4:19826568-19826587 Msa0154960:CDS 40.0%
ATATTCCCCTCCTTCAAACA+AGG + chr1_4:19826581-19826600 None:intergenic 40.0%
TTGTTTGAAGGAGGGGAATA+TGG - chr1_4:19826580-19826599 Msa0154960:CDS 40.0%
TCGCGATTATCTGTAATAGG+AGG - chr1_4:19826649-19826668 Msa0154960:CDS 40.0%
CAGGAAAGTTCAAGAATGCA+AGG - chr1_4:19826674-19826693 Msa0154960:CDS 40.0%
GGAAAGTTCAAGAATGCAAG+GGG - chr1_4:19826676-19826695 Msa0154960:CDS 40.0%
GAAAGTTCAAGAATGCAAGG+GGG - chr1_4:19826677-19826696 Msa0154960:CDS 40.0%
ATTGATCCAATTGCAGCCAC+AGG - chr1_4:19822895-19822914 Msa0154960:CDS 45.0%
GTATATGTTGCCGAGCAAAC+CGG + chr1_4:19822992-19823011 None:intergenic 45.0%
TTGCTCGGCAACATATACAG+TGG - chr1_4:19822994-19823013 Msa0154960:CDS 45.0%
AATCCAACTGGGGTTGCAAA+GGG + chr1_4:19823027-19823046 None:intergenic 45.0%
! GGGATTGGCATACTATCACT+TGG + chr1_4:19823057-19823076 None:intergenic 45.0%
!! GGTGTTACTGGTATCCCTTT+AGG - chr1_4:19823108-19823127 Msa0154960:CDS 45.0%
! ACTGGTATCCCTTTAGGAAC+TGG - chr1_4:19823114-19823133 Msa0154960:CDS 45.0%
CCAGCTAAACCAGTTCCTAA+AGG + chr1_4:19823126-19823145 None:intergenic 45.0%
! CCTTTAGGAACTGGTTTAGC+TGG - chr1_4:19823123-19823142 Msa0154960:CDS 45.0%
CAGTTAACGTTAGGACCTGA+TGG - chr1_4:19823192-19823211 Msa0154960:CDS 45.0%
AATTGTTGGAAAGGGTCAGG+GGG - chr1_4:19823287-19823306 Msa0154960:CDS 45.0%
TATGTAGCAAGTTCGGCTGA+CGG - chr1_4:19823312-19823331 Msa0154960:CDS 45.0%
!! CTTTTTGAAGGAGGGGAGTA+TGG - chr1_4:19823363-19823382 Msa0154960:CDS 45.0%
! ATGTCGCGATTATCGGTTGT+AGG - chr1_4:19823429-19823448 Msa0154960:CDS 45.0%
! ATTATCGGTTGTAGGAGGGA+CGG - chr1_4:19823437-19823456 Msa0154960:CDS 45.0%
! ATGGTGCTGAGACTTTGTTG+AGG - chr1_4:19823529-19823548 Msa0154960:CDS 45.0%
! TGAAGGTGTGTGAAAGCATG+TGG - chr1_4:19823596-19823615 Msa0154960:CDS 45.0%
! GAAGGTGTGTGAAAGCATGT+GGG - chr1_4:19823597-19823616 Msa0154960:CDS 45.0%
GCAATATGGGAACTTGGCTT+TGG - chr1_4:19823745-19823764 Msa0154960:intron 45.0%
GGACAATTCAGACAAGGCAT+AGG - chr1_4:19824172-19824191 Msa0154960:intron 45.0%
ATCGCAAGATCTCATGCATG+AGG - chr1_4:19824201-19824220 Msa0154960:intron 45.0%
TCAACTTTCTGTGCATCGCT+AGG + chr1_4:19824506-19824525 None:intergenic 45.0%
GGATGTGTGGTAAGACTAGA+TGG + chr1_4:19824950-19824969 None:intergenic 45.0%
AAAGTAAGTGTGCGGAGATG+GGG + chr1_4:19824983-19825002 None:intergenic 45.0%
TGACAAGTCAGCAACATGAG+AGG + chr1_4:19825602-19825621 None:intergenic 45.0%
GTGGCGTTGTTGAGATCTAA+TGG + chr1_4:19825804-19825823 None:intergenic 45.0%
TTGATCCTATTGCAGCCACA+GGG - chr1_4:19826119-19826138 Msa0154960:CDS 45.0%
TCTTGGTGGAAGTAACCCAA+CGG - chr1_4:19826177-19826196 Msa0154960:CDS 45.0%
!! TCGACCTGTAACTGGTTTGT+TGG - chr1_4:19826201-19826220 Msa0154960:CDS 45.0%
!! CGACCTGTAACTGGTTTGTT+GGG - chr1_4:19826202-19826221 Msa0154960:CDS 45.0%
TTGCCCAACAAACCAGTTAC+AGG + chr1_4:19826208-19826227 None:intergenic 45.0%
GAATCCTATTGGCGTAGCAA+AGG + chr1_4:19826251-19826270 None:intergenic 45.0%
GATTCAACACTCCACAAGGT+GGG - chr1_4:19826266-19826285 Msa0154960:intron 45.0%
GCACCATTTGCATTAGGGAT+GGG + chr1_4:19826295-19826314 None:intergenic 45.0%
AGCACCATTTGCATTAGGGA+TGG + chr1_4:19826296-19826315 None:intergenic 45.0%
GGGATAGCACCATTTGCATT+AGG + chr1_4:19826301-19826320 None:intergenic 45.0%
GATACCGGTAACACCATTGA+CGG + chr1_4:19826326-19826345 None:intergenic 45.0%
TATCCCATTAGGAACTGGCT+TGG - chr1_4:19826342-19826361 Msa0154960:CDS 45.0%
!! GTTTGGTGCAAACGAAGTAC+CGG + chr1_4:19826368-19826387 None:intergenic 45.0%
AACAATGCTCAGGTGCAGTT+AGG - chr1_4:19826400-19826419 Msa0154960:CDS 45.0%
AATCCTAGTCCAAGTCCATC+AGG + chr1_4:19826427-19826446 None:intergenic 45.0%
! GATGGACTTGGACTAGGATT+TGG - chr1_4:19826427-19826446 Msa0154960:CDS 45.0%
CAAATGGTTGGGAAAGCTCA+AGG - chr1_4:19826502-19826521 Msa0154960:CDS 45.0%
!! TTCACAGCCTTGTTTGAAGG+AGG - chr1_4:19826571-19826590 Msa0154960:CDS 45.0%
!! TCACAGCCTTGTTTGAAGGA+GGG - chr1_4:19826572-19826591 Msa0154960:CDS 45.0%
!!! ATATTTTTTTAAAATAGAAT+TGG - chr1_4:19825748-19825767 Msa0154960:intron 5.0%
TCCAATTGCAGCCACAGGAA+AGG - chr1_4:19822900-19822919 Msa0154960:CDS 50.0%
TCCTTTCCTGTGGCTGCAAT+TGG + chr1_4:19822904-19822923 None:intergenic 50.0%
! TCTTGGTGGCAGTAACCCAA+CGG - chr1_4:19822954-19822973 Msa0154960:CDS 50.0%
GAATCCAACTGGGGTTGCAA+AGG + chr1_4:19823028-19823047 None:intergenic 50.0%
!! ACGTTAGGACCTGATGGACT+TGG - chr1_4:19823198-19823217 Msa0154960:CDS 50.0%
!! GGACCTGATGGACTTGGATT+AGG - chr1_4:19823204-19823223 Msa0154960:CDS 50.0%
! GGGGGTGTATGTAGCAAGTT+CGG - chr1_4:19823305-19823324 Msa0154960:CDS 50.0%
ATGTAGCAAGTTCGGCTGAC+GGG - chr1_4:19823313-19823332 Msa0154960:CDS 50.0%
TGACGGGAGTAGACAGATGA+TGG - chr1_4:19823329-19823348 Msa0154960:CDS 50.0%
! TCGCGATTATCGGTTGTAGG+AGG - chr1_4:19823432-19823451 Msa0154960:CDS 50.0%
! CGCGATTATCGGTTGTAGGA+GGG - chr1_4:19823433-19823452 Msa0154960:CDS 50.0%
! TTATCGGTTGTAGGAGGGAC+GGG - chr1_4:19823438-19823457 Msa0154960:CDS 50.0%
CTGAGACCTCTTATTCCACC+TGG - chr1_4:19823492-19823511 Msa0154960:CDS 50.0%
ACCTCTTATTCCACCTGGAC+AGG - chr1_4:19823497-19823516 Msa0154960:CDS 50.0%
ACCTGTCCAGGTGGAATAAG+AGG + chr1_4:19823501-19823520 None:intergenic 50.0%
CACTTAGTGGGGCAACTACA+TGG - chr1_4:19824654-19824673 Msa0154960:intron 50.0%
GGGATGTTGTGTTGGATGTG+TGG + chr1_4:19824963-19824982 None:intergenic 50.0%
GTTGGAGTGGTTGTGATGCA+TGG + chr1_4:19825902-19825921 None:intergenic 50.0%
GTTGATCCTATTGCAGCCAC+AGG - chr1_4:19826118-19826137 Msa0154960:CDS 50.0%
TCTTTCCCTGTGGCTGCAAT+AGG + chr1_4:19826127-19826146 None:intergenic 50.0%
GGATTCAACACTCCACAAGG+TGG - chr1_4:19826265-19826284 Msa0154960:intron 50.0%
! GGTGTTACCGGTATCCCATT+AGG - chr1_4:19826331-19826350 Msa0154960:CDS 50.0%
ACCGGTATCCCATTAGGAAC+TGG - chr1_4:19826337-19826356 Msa0154960:CDS 50.0%
GCCAGTTCCTAATGGGATAC+CGG + chr1_4:19826341-19826360 None:intergenic 50.0%
!! CAGTTAGGACCTGATGGACT+TGG - chr1_4:19826415-19826434 Msa0154960:CDS 50.0%
TATGTGGCCAGTTCAGCAGA+TGG - chr1_4:19826529-19826548 Msa0154960:intron 50.0%
ATGTGGCCAGTTCAGCAGAT+GGG - chr1_4:19826530-19826549 Msa0154960:intron 50.0%
AGATGGGAGCAGACAGATGA+TGG - chr1_4:19826546-19826565 Msa0154960:intron 50.0%
!! CACAGCCTTGTTTGAAGGAG+GGG - chr1_4:19826573-19826592 Msa0154960:CDS 50.0%
ATCTGTCCTGGTGGGATAAG+AGG + chr1_4:19826718-19826737 None:intergenic 50.0%
CAGCAATGTCTCTGCACCAT+CGG + chr1_4:19826746-19826765 None:intergenic 50.0%
ATGGTGCAGAGACATTGCTG+AGG - chr1_4:19826746-19826765 Msa0154960:CDS 50.0%
GTACCCTTTGCAACCCCAGT+TGG - chr1_4:19823021-19823040 Msa0154960:CDS 55.0%
! TATCGGTTGTAGGAGGGACG+GGG - chr1_4:19823439-19823458 Msa0154960:CDS 55.0%
TCAGTAGCAACCTGTCCAGG+TGG + chr1_4:19823510-19823529 None:intergenic 55.0%
CCATCAGTAGCAACCTGTCC+AGG + chr1_4:19823513-19823532 None:intergenic 55.0%
CCTGGACAGGTTGCTACTGA+TGG - chr1_4:19823510-19823529 Msa0154960:CDS 55.0%
CGGAGATGGGGATGTTGTGT+TGG + chr1_4:19824971-19824990 None:intergenic 55.0%
! GAATGAAGGGCGTGTTGGAG+TGG + chr1_4:19825915-19825934 None:intergenic 55.0%
! AGAGGGAATGAAGGGCGTGT+TGG + chr1_4:19825920-19825939 None:intergenic 55.0%
CAGTTACAGGTCGAGCCGTT+GGG + chr1_4:19826195-19826214 None:intergenic 55.0%
!! TTGGCGTAGCAAAGGGCACT+TGG + chr1_4:19826243-19826262 None:intergenic 55.0%
GTGCCCTTTGCTACGCCAAT+AGG - chr1_4:19826244-19826263 Msa0154960:intron 55.0%
CGGTAACACCATTGACGGTG+GGG + chr1_4:19826321-19826340 None:intergenic 55.0%
CCGGTAACACCATTGACGGT+GGG + chr1_4:19826322-19826341 None:intergenic 55.0%
!! CCCACCGTCAATGGTGTTAC+CGG - chr1_4:19826319-19826338 Msa0154960:CDS 55.0%
ACCGGTAACACCATTGACGG+TGG + chr1_4:19826323-19826342 None:intergenic 55.0%
CGGCCAAGCCAGTTCCTAAT+GGG + chr1_4:19826348-19826367 None:intergenic 55.0%
!! CCATTAGGAACTGGCTTGGC+CGG - chr1_4:19826346-19826365 Msa0154960:CDS 55.0%
CAGGTGCAGTTAGGACCTGA+TGG - chr1_4:19826409-19826428 Msa0154960:CDS 55.0%
!! GGACCTGATGGACTTGGACT+AGG - chr1_4:19826421-19826440 Msa0154960:CDS 55.0%
TCTGCTCCCATCTGCTGAAC+TGG + chr1_4:19826539-19826558 None:intergenic 55.0%
CTGAGACCTCTTATCCCACC+AGG - chr1_4:19826709-19826728 Msa0154960:CDS 55.0%
CAATGTCTCTGCACCATCGG+TGG + chr1_4:19826743-19826762 None:intergenic 55.0%
!! CGACCAGTGACCGGTTTGCT+CGG - chr1_4:19822979-19822998 Msa0154960:CDS 60.0%
TTGCCGAGCAAACCGGTCAC+TGG + chr1_4:19822985-19823004 None:intergenic 60.0%
CCAGTTACAGGTCGAGCCGT+TGG + chr1_4:19826196-19826215 None:intergenic 60.0%
CCAACGGCTCGACCTGTAAC+TGG - chr1_4:19826193-19826212 Msa0154960:CDS 60.0%
GGGATGGGAATCCCACCTTG+TGG + chr1_4:19826280-19826299 None:intergenic 60.0%
! GGTGCTATCCCCACCGTCAA+TGG - chr1_4:19826310-19826329 Msa0154960:intron 60.0%
CCGGCCAAGCCAGTTCCTAA+TGG + chr1_4:19826349-19826368 None:intergenic 60.0%
CGGTGGCAATCTGTCCTGGT+GGG + chr1_4:19826726-19826745 None:intergenic 60.0%
TCGGTGGCAATCTGTCCTGG+TGG + chr1_4:19826727-19826746 None:intergenic 60.0%
CCATCGGTGGCAATCTGTCC+TGG + chr1_4:19826730-19826749 None:intergenic 60.0%
CCAGGACAGATTGCCACCGA+TGG - chr1_4:19826727-19826746 Msa0154960:CDS 60.0%
CGGTCACTGGTCGAGCCGTT+GGG + chr1_4:19822972-19822991 None:intergenic 65.0%
CCAACGGCTCGACCAGTGAC+CGG - chr1_4:19822970-19822989 Msa0154960:CDS 65.0%
CCGGTCACTGGTCGAGCCGT+TGG + chr1_4:19822973-19822992 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19822874 19826792 19822874 ID=Msa0154960;Name=Msa0154960
chr1_4 mRNA 19822874 19826792 19822874 ID=Msa0154960-mRNA-1;Parent=Msa0154960;Name=Msa0154960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0.25|4|0|452
chr1_4 exon 19826549 19826792 19826549 ID=Msa0154960-mRNA-1:exon:7307;Parent=Msa0154960-mRNA-1
chr1_4 exon 19826316 19826536 19826316 ID=Msa0154960-mRNA-1:exon:7306;Parent=Msa0154960-mRNA-1
chr1_4 exon 19826109 19826249 19826109 ID=Msa0154960-mRNA-1:exon:7305;Parent=Msa0154960-mRNA-1
chr1_4 exon 19822874 19823626 19822874 ID=Msa0154960-mRNA-1:exon:7304;Parent=Msa0154960-mRNA-1
chr1_4 CDS 19826549 19826792 19826549 ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1
chr1_4 CDS 19826316 19826536 19826316 ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1
chr1_4 CDS 19826109 19826249 19826109 ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1
chr1_4 CDS 19822874 19823626 19822874 ID=Msa0154960-mRNA-1:cds;Parent=Msa0154960-mRNA-1
Gene Sequence

>Msa0154960

ATGGCAACAAACATAACAGCTATTGATCCAATTGCAGCCACAGGAAAGGAACCAATCATTGAGTTGTTCATGCATGACATTCTTGGTGGCAGTAACCCAACGGCTCGACCAGTGACCGGTTTGCTCGGCAACATATACAGTGGTCAAGTACCCTTTGCAACCCCAGTTGGATTCAACATTCCAAGTGATAGTATGCCAATCCCTAATGCAAATGGTGTTAATCCTACTGTTAATGGTGTTACTGGAACTGGTTTAGCTGGTACTTCTTTTGCACCAAACAATAACAATAACAATCAAAACAATGTTCAGTTAACGTTAGGACCTGATGGACTTGGATTAGGATTTGGTACAATCACTGTTATTGATGATATATTAACATCTCAACCAGAGTTAGGTTCACAAATTGTTGGAAAGGGTCAGGGGGTGTATGTAGCAAGTTCGGCTGACGGGAGTAGACAGATGATGATTGGAAGTACTATGTCGCGATTATCGGTTGTAGGAGGGACGGGGAAGTTTAAGTATGCTAAAGGGTTTGCTGAACTGAGACCTCTTATTCCACCTGGACAGGTTGCTACTGATGGTGCTGAGACTTTGTTGAGGATTACTATGGCTATGGGATTACTAACTATATCTCCCTTGGTAATGTTGGTTGTTTTTTCTTATTTAACAATGTCTATAACAGCAGTTGATCCTATTGCAGCCACAGGGAAAGAACCAATCATTGAGTTGTTCATGCATGACATTCTTGGTGGAAGTAACCCAACGGCTCGACCTGTAACTGGTTTGTTGGGCAACATATACAGTGGCCAAGTGCCCTTTGCTACGCCAATAGGATTCAACACTCCACAAGGTGGGATTCCCATCCCTAATGCAAATGGTGCTATCCCCACCGTCAATGGTGTTACCGGTATCCCATTAGGAACTGGCTTGGCCGGTACTTCGTTTGCACCAAACAGCAACAATCAAAACAATGCTCAGGTGCAGTTAGGACCTGATGGACTTGGACTAGGATTTGGTACAATCACTGTTATTGATGATATACTAACATCTCAACCTGAATTGGGTTCTCAAATGGTTGGGAAAGCTCAAGGTGTTTATGTGGCCAGTTCAGCAGATGGGAGCAGACAGATGATGGTATTCACAGCCTTGTTTGAAGGAGGGGAATATGGAGATAGCTTGAACTTTTATGGTTTGTATAAGATAGGAAGTACCATGTCGCGATTATCTGTAATAGGAGGTACAGGAAAGTTCAAGAATGCAAGGGGGTTTGCAGAACTGAGACCTCTTATCCCACCAGGACAGATTGCCACCGATGGTGCAGAGACATTGCTGAGGATGAGTGTCCATTTGAAATACTAG

Protein sequence

>Msa0154960

MATNITAIDPIAATGKEPIIELFMHDILGGSNPTARPVTGLLGNIYSGQVPFATPVGFNIPSDSMPIPNANGVNPTVNGVTGTGLAGTSFAPNNNNNNQNNVQLTLGPDGLGLGFGTITVIDDILTSQPELGSQIVGKGQGVYVASSADGSRQMMIGSTMSRLSVVGGTGKFKYAKGFAELRPLIPPGQVATDGAETLLRITMAMGLLTISPLVMLVVFSYLTMSITAVDPIAATGKEPIIELFMHDILGGSNPTARPVTGLLGNIYSGQVPFATPIGFNTPQGGIPIPNANGAIPTVNGVTGIPLGTGLAGTSFAPNSNNQNNAQVQLGPDGLGLGFGTITVIDDILTSQPELGSQMVGKAQGVYVASSADGSRQMMVFTALFEGGEYGDSLNFYGLYKIGSTMSRLSVIGGTGKFKNARGFAELRPLIPPGQIATDGAETLLRMSVHLKY*