Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017350 | sp|Q9T0H8|DIR18_ARATH | 68.182 | 242 | 75 | 1 | 211 | 452 | 5 | 244 | 9.37e-110 | 327 |
| Msa0017350 | sp|Q9T0H8|DIR18_ARATH | 58.874 | 231 | 62 | 4 | 1 | 205 | 19 | 242 | 1.41e-75 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017350 | A0A6N2M652 | 68.277 | 476 | 117 | 9 | 5 | 452 | 25 | 494 | 0.0 | 594 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017350 | Msa0065590 | 0.822002 | 2.989933e-53 | -8.615850e-47 |
| Msa0017350 | Msa0072030 | 0.806632 | 7.485619e-50 | -8.615850e-47 |
| Msa0017350 | Msa0087900 | 0.809125 | 2.208859e-50 | -8.615850e-47 |
| Msa0017350 | Msa0111040 | 0.815369 | 9.575174e-52 | -8.615850e-47 |
| Msa0017350 | Msa0120450 | 0.803088 | 4.118675e-49 | -8.615850e-47 |
| Msa0017350 | Msa0140270 | 0.800296 | 1.540695e-48 | -8.615850e-47 |
| Msa0017350 | Msa0150910 | 0.814994 | 1.160238e-51 | -8.615850e-47 |
| Msa0017350 | Msa0154960 | 0.804457 | 2.140137e-49 | -8.615850e-47 |
| Msa0017350 | Msa0163370 | 0.819403 | 1.183239e-52 | -8.615850e-47 |
| Msa0017350 | Msa0163690 | 0.811653 | 6.286997e-51 | -8.615850e-47 |
| Msa0017350 | Msa0248320 | 0.801006 | 1.103709e-48 | -8.615850e-47 |
| Msa0017350 | Msa0333770 | 0.804230 | 2.386824e-49 | -8.615850e-47 |
| Msa0017350 | Msa0356240 | 0.800089 | 1.697418e-48 | -8.615850e-47 |
| Msa0017350 | Msa0380110 | 0.809537 | 1.802132e-50 | -8.615850e-47 |
| Msa0017350 | Msa0396790 | 0.800238 | 1.582901e-48 | -8.615850e-47 |
| Msa0017350 | Msa0414480 | 0.808825 | 2.559842e-50 | -8.615850e-47 |
| Msa0017350 | Msa0425950 | 0.809164 | 2.166158e-50 | -8.615850e-47 |
| Msa0017350 | Msa0426030 | 0.805251 | 1.461189e-49 | -8.615850e-47 |
| Msa0017350 | Msa0444400 | 0.818317 | 2.087672e-52 | -8.615850e-47 |
| Msa0017350 | Msa0472390 | 0.815719 | 8.004881e-52 | -8.615850e-47 |
| Msa0017350 | Msa0487110 | 0.800244 | 1.578491e-48 | -8.615850e-47 |
| Msa0017350 | Msa0532660 | 0.819136 | 1.360801e-52 | -8.615850e-47 |
| Msa0017350 | Msa0538440 | 0.802498 | 5.453590e-49 | -8.615850e-47 |
| Msa0017350 | Msa0548790 | 0.814644 | 1.387315e-51 | -8.615850e-47 |
| Msa0017350 | Msa0591490 | 0.801575 | 8.440595e-49 | -8.615850e-47 |
| Msa0017350 | Msa0594330 | 0.804670 | 1.932841e-49 | -8.615850e-47 |
| Msa0017350 | Msa0678620 | 0.800816 | 1.207076e-48 | -8.615850e-47 |
| Msa0017350 | Msa0727480 | 0.803351 | 3.633728e-49 | -8.615850e-47 |
| Msa0017350 | Msa0798840 | 0.807031 | 6.165217e-50 | -8.615850e-47 |
| Msa0017350 | Msa0896920 | 0.841556 | 4.422606e-58 | -8.615850e-47 |
| Msa0017350 | Msa0896950 | 0.833515 | 5.101809e-56 | -8.615850e-47 |
| Msa0017350 | Msa0913550 | 0.813725 | 2.213698e-51 | -8.615850e-47 |
| Msa0017350 | Msa0996980 | 0.832349 | 9.947466e-56 | -8.615850e-47 |
| Msa0017350 | Msa1006170 | 0.805925 | 1.054757e-49 | -8.615850e-47 |
| Msa0017350 | Msa1024480 | 0.803254 | 3.804996e-49 | -8.615850e-47 |
| Msa0017350 | Msa1049400 | 0.816464 | 5.457085e-52 | -8.615850e-47 |
| Msa0017350 | Msa1063210 | 0.815605 | 8.485139e-52 | -8.615850e-47 |
| Msa0017350 | Msa1064940 | 0.813343 | 2.685112e-51 | -8.615850e-47 |
| Msa0017350 | Msa1108610 | 0.818781 | 1.638802e-52 | -8.615850e-47 |
| Msa0017350 | Msa1138110 | 0.809861 | 1.535170e-50 | -8.615850e-47 |
| Msa0017350 | Msa1143250 | 0.811156 | 8.058758e-51 | -8.615850e-47 |
| Msa0017350 | Msa1263120 | 0.803727 | 3.036129e-49 | -8.615850e-47 |
| Msa0017350 | Msa1267990 | 0.802971 | 4.353891e-49 | -8.615850e-47 |
| Msa0017350 | Msa1269500 | 0.805962 | 1.035959e-49 | -8.615850e-47 |
| Msa0017350 | Msa1321970 | 0.805370 | 1.379281e-49 | -8.615850e-47 |
| Msa0017350 | Msa1445900 | 0.801972 | 6.994624e-49 | -8.615850e-47 |
| Msa0017350 | Msa1458270 | 0.807708 | 4.429944e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017350 | MtrunA17_Chr1g0169291 | 98.000 | 250 | 5 | 0 | 203 | 452 | 1 | 250 | 1.32e-172 | 484 |
| Msa0017350 | MtrunA17_Chr1g0169291 | 76.754 | 228 | 25 | 3 | 4 | 205 | 23 | 248 | 4.01e-106 | 315 |
| Msa0017350 | MtrunA17_Chr1g0169511 | 98.000 | 250 | 5 | 0 | 203 | 452 | 1 | 250 | 3.19e-172 | 483 |
| Msa0017350 | MtrunA17_Chr1g0169511 | 76.754 | 228 | 25 | 3 | 4 | 205 | 23 | 248 | 7.51e-112 | 329 |
| Msa0017350 | MtrunA17_Chr1g0169281 | 86.364 | 242 | 31 | 1 | 213 | 452 | 15 | 256 | 7.74e-141 | 403 |
| Msa0017350 | MtrunA17_Chr1g0169281 | 84.848 | 231 | 9 | 2 | 1 | 205 | 24 | 254 | 1.04e-119 | 350 |
| Msa0017350 | MtrunA17_Chr1g0212861 | 40.426 | 235 | 121 | 5 | 237 | 452 | 119 | 353 | 1.54e-39 | 145 |
| Msa0017350 | MtrunA17_Chr1g0212861 | 34.322 | 236 | 106 | 6 | 16 | 205 | 119 | 351 | 1.20e-24 | 104 |
| Msa0017350 | MtrunA17_Chr4g0030681 | 44.053 | 227 | 114 | 5 | 237 | 452 | 80 | 304 | 2.09e-39 | 144 |
| Msa0017350 | MtrunA17_Chr4g0030681 | 36.283 | 226 | 99 | 5 | 16 | 202 | 80 | 299 | 7.80e-25 | 103 |
| Msa0017350 | MtrunA17_Chr4g0030731 | 42.478 | 226 | 120 | 4 | 237 | 452 | 78 | 303 | 2.45e-39 | 144 |
| Msa0017350 | MtrunA17_Chr4g0030731 | 36.283 | 226 | 100 | 5 | 16 | 202 | 78 | 298 | 8.96e-25 | 103 |
| Msa0017350 | MtrunA17_Chr7g0221601 | 39.754 | 244 | 114 | 8 | 231 | 450 | 153 | 387 | 3.29e-39 | 145 |
| Msa0017350 | MtrunA17_Chr7g0221601 | 33.594 | 256 | 104 | 8 | 2 | 205 | 146 | 387 | 5.95e-25 | 105 |
| Msa0017350 | MtrunA17_Chr4g0030671 | 33.798 | 287 | 161 | 10 | 184 | 450 | 3 | 280 | 2.40e-35 | 132 |
| Msa0017350 | MtrunA17_Chr4g0030671 | 33.333 | 225 | 110 | 7 | 18 | 205 | 59 | 280 | 1.47e-21 | 94.4 |
| Msa0017350 | MtrunA17_Chr1g0212871 | 32.367 | 207 | 110 | 5 | 241 | 442 | 51 | 232 | 5.40e-21 | 91.7 |
| Msa0017350 | MtrunA17_Chr1g0175911 | 40.000 | 90 | 53 | 1 | 337 | 425 | 81 | 170 | 1.00e-13 | 69.7 |
| Msa0017350 | MtrunA17_Chr4g0024951 | 35.345 | 116 | 66 | 3 | 338 | 450 | 66 | 175 | 2.55e-13 | 68.2 |
| Msa0017350 | MtrunA17_Chr7g0259071 | 42.553 | 94 | 52 | 2 | 336 | 427 | 76 | 169 | 3.47e-13 | 68.2 |
| Msa0017350 | MtrunA17_Chr4g0068381 | 35.955 | 89 | 56 | 1 | 336 | 423 | 66 | 154 | 7.18e-13 | 67.0 |
| Msa0017350 | MtrunA17_Chr4g0005111 | 41.111 | 90 | 52 | 1 | 338 | 426 | 78 | 167 | 1.12e-12 | 66.6 |
| Msa0017350 | MtrunA17_Chr7g0259091 | 40.000 | 95 | 55 | 2 | 335 | 427 | 78 | 172 | 1.36e-12 | 66.6 |
| Msa0017350 | MtrunA17_Chr3g0085321 | 37.963 | 108 | 64 | 2 | 320 | 424 | 57 | 164 | 1.51e-12 | 66.2 |
| Msa0017350 | MtrunA17_Chr4g0068391 | 38.000 | 100 | 59 | 3 | 330 | 427 | 60 | 158 | 1.68e-12 | 65.9 |
| Msa0017350 | MtrunA17_Chr4g0005011 | 31.624 | 117 | 73 | 2 | 337 | 452 | 86 | 196 | 3.35e-12 | 65.5 |
| Msa0017350 | MtrunA17_Chr4g0024961 | 40.909 | 88 | 51 | 1 | 338 | 424 | 66 | 153 | 4.42e-12 | 64.7 |
| Msa0017350 | MtrunA17_Chr3g0085301 | 34.579 | 107 | 67 | 2 | 321 | 424 | 63 | 169 | 6.48e-12 | 64.3 |
| Msa0017350 | MtrunA17_Chr7g0259101 | 40.000 | 95 | 55 | 2 | 335 | 427 | 78 | 172 | 1.22e-11 | 66.2 |
| Msa0017350 | MtrunA17_Chr7g0259101 | 40.000 | 95 | 55 | 2 | 335 | 427 | 277 | 371 | 1.36e-11 | 65.9 |
| Msa0017350 | MtrunA17_Chr3g0085311 | 39.362 | 94 | 56 | 1 | 337 | 429 | 76 | 169 | 1.41e-11 | 63.5 |
| Msa0017350 | MtrunA17_Chr4g0005131 | 39.362 | 94 | 56 | 1 | 337 | 429 | 78 | 171 | 2.51e-11 | 62.8 |
| Msa0017350 | MtrunA17_Chr7g0259121 | 39.175 | 97 | 53 | 2 | 336 | 427 | 76 | 171 | 4.08e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017350 | AT4G13580.1 | 68.182 | 242 | 75 | 1 | 211 | 452 | 5 | 244 | 9.53e-111 | 327 |
| Msa0017350 | AT4G13580.1 | 58.874 | 231 | 62 | 4 | 1 | 205 | 19 | 242 | 1.43e-76 | 239 |
| Msa0017350 | AT3G24020.1 | 67.490 | 243 | 73 | 3 | 211 | 452 | 6 | 243 | 9.13e-110 | 324 |
| Msa0017350 | AT3G24020.1 | 58.009 | 231 | 64 | 4 | 1 | 205 | 18 | 241 | 9.52e-77 | 239 |
| Msa0017350 | AT1G07730.2 | 43.913 | 230 | 105 | 6 | 243 | 452 | 164 | 389 | 1.65e-43 | 157 |
| Msa0017350 | AT1G07730.2 | 39.556 | 225 | 94 | 7 | 22 | 205 | 164 | 387 | 2.63e-23 | 101 |
| Msa0017350 | AT2G28670.2 | 44.348 | 230 | 102 | 6 | 245 | 452 | 1 | 226 | 7.65e-42 | 148 |
| Msa0017350 | AT2G28670.2 | 39.111 | 225 | 93 | 7 | 24 | 205 | 1 | 224 | 2.25e-23 | 98.6 |
| Msa0017350 | AT2G28670.1 | 44.397 | 232 | 103 | 6 | 243 | 452 | 209 | 436 | 5.02e-41 | 152 |
| Msa0017350 | AT2G28670.1 | 39.207 | 227 | 94 | 7 | 22 | 205 | 209 | 434 | 5.54e-23 | 101 |
| Msa0017350 | AT2G39430.1 | 38.843 | 242 | 124 | 6 | 234 | 452 | 80 | 320 | 4.72e-38 | 141 |
| Msa0017350 | AT2G39430.1 | 35.146 | 239 | 109 | 6 | 13 | 205 | 80 | 318 | 1.01e-27 | 112 |
| Msa0017350 | AT3G55230.1 | 37.860 | 243 | 127 | 6 | 233 | 452 | 62 | 303 | 1.85e-37 | 139 |
| Msa0017350 | AT3G55230.1 | 36.667 | 240 | 106 | 7 | 12 | 205 | 62 | 301 | 2.10e-31 | 122 |
| Msa0017350 | AT1G65870.1 | 36.364 | 110 | 67 | 2 | 324 | 430 | 62 | 171 | 4.54e-14 | 70.9 |
| Msa0017350 | AT5G42510.1 | 41.304 | 92 | 53 | 1 | 334 | 424 | 69 | 160 | 2.47e-13 | 68.6 |
| Msa0017350 | AT3G13650.1 | 37.634 | 93 | 57 | 1 | 338 | 429 | 74 | 166 | 8.11e-13 | 67.4 |
| Msa0017350 | AT5G42500.1 | 38.710 | 93 | 56 | 1 | 336 | 427 | 74 | 166 | 2.01e-12 | 66.2 |
| Msa0017350 | AT3G58090.1 | 37.500 | 88 | 54 | 1 | 341 | 427 | 163 | 250 | 6.62e-12 | 66.2 |
| Msa0017350 | AT1G22900.1 | 39.773 | 88 | 52 | 1 | 338 | 424 | 84 | 171 | 6.48e-11 | 62.0 |
Find 155 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCCCTGTGGCTGCAAT+AGG | 0.227062 | 1_1:+28745106 | None:intergenic |
| TTGTTTGAAGGAGGGGAATA+TGG | 0.272005 | 1_1:-28744650 | Msa0017350:CDS |
| ACTAACATCTCAACCTGAAT+TGG | 0.273439 | 1_1:-28744756 | Msa0017350:CDS |
| TCCTTTCCTGTGGCTGCAAT+TGG | 0.276263 | 1_1:+28749295 | None:intergenic |
| ATGTCACGATTATCTGTAAT+AGG | 0.276711 | 1_1:-28744584 | Msa0017350:CDS |
| CCTACTGTTAATGGTGTTAC+TGG | 0.279068 | 1_1:-28749100 | Msa0017350:intron |
| ACCATTTGAGAACCCAATTC+AGG | 0.294933 | 1_1:+28744743 | None:intergenic |
| GGATTAACACCATTTGCATT+AGG | 0.297019 | 1_1:+28749121 | None:intergenic |
| CCCACTGTCAATGGCGTTAC+CGG | 0.297504 | 1_1:-28744911 | Msa0017350:CDS |
| AAGTACTATGTCGCGATTAT+CGG | 0.316886 | 1_1:-28748774 | Msa0017350:CDS |
| GGACCTGATGGACTTGGATT+AGG | 0.319881 | 1_1:-28748992 | Msa0017350:CDS |
| GGAATAGCACCATTTGCATT+AGG | 0.322975 | 1_1:+28744932 | None:intergenic |
| GATGGACTTGGATTAGGATT+TGG | 0.351208 | 1_1:-28748986 | Msa0017350:CDS |
| GATTAACACCATTTGCATTA+GGG | 0.356622 | 1_1:+28749122 | None:intergenic |
| GGTGTTAATCCTACTGTTAA+TGG | 0.373730 | 1_1:-28749109 | Msa0017350:CDS |
| GAATAGCACCATTTGCATTA+GGG | 0.374064 | 1_1:+28744933 | None:intergenic |
| CCAACGGCTCGACCGGTAAC+TGG | 0.374627 | 1_1:-28745037 | Msa0017350:CDS |
| TTAACATCTCAACCAGAGTT+AGG | 0.377354 | 1_1:-28748938 | Msa0017350:CDS |
| GATGGACTTGGACTAGGATT+TGG | 0.379130 | 1_1:-28744803 | Msa0017350:CDS |
| TGTCACGATTATCTGTAATA+GGG | 0.389955 | 1_1:-28744583 | Msa0017350:CDS |
| CTTTCCCTGTGGCTGCAATA+GGG | 0.392550 | 1_1:+28745107 | None:intergenic |
| TCGACCGGTAACTGGTTTGT+TGG | 0.396440 | 1_1:-28745029 | Msa0017350:CDS |
| TGATTGTTATTGTTATTGTT+TGG | 0.402312 | 1_1:+28749037 | None:intergenic |
| ACCTGAATTGGGTTCTCAAA+TGG | 0.412760 | 1_1:-28744744 | Msa0017350:CDS |
| CTTGGAATGTTGAATCCAAC+TGG | 0.413683 | 1_1:+28749160 | None:intergenic |
| ACAAATTGTTGGAAAGGGTC+AGG | 0.415848 | 1_1:-28748912 | Msa0017350:CDS |
| ACCTGTCCAGGTGGAATAAG+AGG | 0.418722 | 1_1:+28748698 | None:intergenic |
| ATCTGTCCTGGTGGGATAAG+AGG | 0.419373 | 1_1:+28744515 | None:intergenic |
| CCGGCCAAGCCAGTTCCTAA+TGG | 0.422044 | 1_1:+28744884 | None:intergenic |
| TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1_1:-28745070 | Msa0017350:CDS |
| TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1_1:-28749259 | Msa0017350:CDS |
| CCTTTAGGAACTGGTTTAGC+TGG | 0.430422 | 1_1:-28749073 | Msa0017350:intron |
| GCACCATTTGCATTAGGGAT+TGG | 0.434256 | 1_1:+28744938 | None:intergenic |
| TGTGGAGTGTTGAATCCTAT+TGG | 0.438829 | 1_1:+28744971 | None:intergenic |
| TTATCGGTTGTAGGAGGGAC+GGG | 0.439221 | 1_1:-28748758 | Msa0017350:CDS |
| CGGCCAAGCCAGTTCCTAAT+GGG | 0.445570 | 1_1:+28744885 | None:intergenic |
| CCGGTCACTGGTCGAGCCGT+TGG | 0.445896 | 1_1:+28749226 | None:intergenic |
| ACACCATTTGCATTAGGGAT+TGG | 0.448404 | 1_1:+28749127 | None:intergenic |
| ACCGGTATCCCATTAGGAAC+TGG | 0.448563 | 1_1:-28744893 | Msa0017350:CDS |
| ACCTCTTATTCCACCTGGAC+AGG | 0.449379 | 1_1:-28748699 | Msa0017350:CDS |
| TACAGCCTTGTTTGAAGGAG+GGG | 0.452242 | 1_1:-28744657 | Msa0017350:CDS |
| TTACCCAACAAACCAGTTAC+CGG | 0.455048 | 1_1:+28745025 | None:intergenic |
| AATTGGGTTCTCAAATGGTT+GGG | 0.455097 | 1_1:-28744739 | Msa0017350:CDS |
| CGACCGGTAACTGGTTTGTT+GGG | 0.456347 | 1_1:-28745028 | Msa0017350:CDS |
| CTAACATCTCAACCTGAATT+GGG | 0.457016 | 1_1:-28744755 | Msa0017350:CDS |
| CCATCGGTGGCAATCTGTCC+TGG | 0.458677 | 1_1:+28744503 | None:intergenic |
| GGAAGTTTAAGTATGCTAAA+GGG | 0.460142 | 1_1:-28748736 | Msa0017350:CDS |
| GGCGTTACCGGTATCCCATT+AGG | 0.460896 | 1_1:-28744899 | Msa0017350:CDS |
| GGGAAGTTTAAGTATGCTAA+AGG | 0.463071 | 1_1:-28748737 | Msa0017350:CDS |
| CACAGTACTAGTATTTCAAA+TGG | 0.467016 | 1_1:+28744453 | None:intergenic |
| TATAGCTCCCTTGGCAATGT+TGG | 0.469418 | 1_1:-28745170 | Msa0017350:CDS |
| AACAATGTTCAGTTAACGTT+AGG | 0.471550 | 1_1:-28749013 | Msa0017350:CDS |
| GGTTCACAAATTGTTGGAAA+GGG | 0.477487 | 1_1:-28748917 | Msa0017350:CDS |
| TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1_1:+28745082 | None:intergenic |
| TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1_1:+28749271 | None:intergenic |
| CAGTTACCGGTCGAGCCGTT+GGG | 0.479271 | 1_1:+28745038 | None:intergenic |
| GAATTGGGTTCTCAAATGGT+TGG | 0.482363 | 1_1:-28744740 | Msa0017350:CDS |
| GTATTTACAGCCTTGTTTGA+AGG | 0.483173 | 1_1:-28744662 | Msa0017350:CDS |
| CCAGTTACCGGTCGAGCCGT+TGG | 0.485169 | 1_1:+28745037 | None:intergenic |
| AACAATGCTCAGGTGCAGTT+AGG | 0.485687 | 1_1:-28744830 | Msa0017350:CDS |
| ATGCCAATCCCTAATGCAAA+TGG | 0.485841 | 1_1:-28749130 | Msa0017350:CDS |
| CGGTCACTGGTCGAGCCGTT+GGG | 0.485879 | 1_1:+28749227 | None:intergenic |
| CAAATTGTTGGAAAGGGTCA+GGG | 0.488459 | 1_1:-28748911 | Msa0017350:CDS |
| GGTGCTATTCCCACTGTCAA+TGG | 0.489220 | 1_1:-28744920 | Msa0017350:CDS |
| CCATTAGGAACTGGCTTGGC+CGG | 0.489357 | 1_1:-28744884 | Msa0017350:CDS |
| ACTTAGAAACAAGATGGCTA+TGG | 0.496365 | 1_1:-28745203 | Msa0017350:intron |
| AATCCTATTGGTGTAGCAAA+AGG | 0.499214 | 1_1:+28744983 | None:intergenic |
| AATCCTAATCCAAGTCCATC+AGG | 0.506312 | 1_1:+28748989 | None:intergenic |
| AATCCTAGTCCAAGTCCATC+AGG | 0.508608 | 1_1:+28744806 | None:intergenic |
| ATTCCAATCCCTAATGCAAA+TGG | 0.509041 | 1_1:-28744941 | Msa0017350:CDS |
| GAGTTAGGTTCACAAATTGT+TGG | 0.509703 | 1_1:-28748923 | Msa0017350:CDS |
| CGACCAGTGACCGGTTTGCT+CGG | 0.510231 | 1_1:-28749217 | Msa0017350:CDS |
| GGACCTGATGGACTTGGACT+AGG | 0.513199 | 1_1:-28744809 | Msa0017350:CDS |
| CCTGGACAGGTTGCTACTGA+TGG | 0.513998 | 1_1:-28748686 | Msa0017350:CDS |
| ATGTAGCAAGTTCGGCTGAC+GGG | 0.514478 | 1_1:-28748883 | Msa0017350:CDS |
| ATTACCAACTATAGCTCCCT+TGG | 0.514672 | 1_1:-28745179 | Msa0017350:CDS |
| AGGTTCACAAATTGTTGGAA+AGG | 0.517920 | 1_1:-28748918 | Msa0017350:CDS |
| ACGTTAGGACCTGATGGACT+TGG | 0.520993 | 1_1:-28748998 | Msa0017350:CDS |
| AAGTAACCCAACGGCTCGAC+CGG | 0.524249 | 1_1:-28745044 | Msa0017350:CDS |
| GCCAGTTCCTAATGGGATAC+CGG | 0.525881 | 1_1:+28744892 | None:intergenic |
| CCATCAGTAGCAACCTGTCC+AGG | 0.527354 | 1_1:+28748686 | None:intergenic |
| TCGCGATTATCGGTTGTAGG+AGG | 0.528452 | 1_1:-28748764 | Msa0017350:CDS |
| GAATCCAACTGGGGTTGCAA+AGG | 0.532298 | 1_1:+28749171 | None:intergenic |
| CAGTTAGGACCTGATGGACT+TGG | 0.539311 | 1_1:-28744815 | Msa0017350:CDS |
| ACAATTTGTGAACCTAACTC+TGG | 0.539499 | 1_1:+28748926 | None:intergenic |
| ATGTCGCGATTATCGGTTGT+AGG | 0.540679 | 1_1:-28748767 | Msa0017350:CDS |
| GTATATGTTGCCGAGCAAAC+CGG | 0.541501 | 1_1:+28749207 | None:intergenic |
| TTCATGCATGACATTCTTGG+TGG | 0.543393 | 1_1:-28749256 | Msa0017350:CDS |
| CTGAGACCTCTTATTCCACC+TGG | 0.543896 | 1_1:-28748704 | Msa0017350:CDS |
| GGAAAGTTCAAGAATGCAAG+GGG | 0.543902 | 1_1:-28744554 | Msa0017350:CDS |
| CAGGTGCAGTTAGGACCTGA+TGG | 0.543932 | 1_1:-28744821 | Msa0017350:CDS |
| AATCCAACTGGGGTTGCAAA+GGG | 0.544346 | 1_1:+28749172 | None:intergenic |
| AATGATTGGTTCCTTTCCTG+TGG | 0.544898 | 1_1:+28749285 | None:intergenic |
| GGGATTGGCATACTATCACT+TGG | 0.545050 | 1_1:+28749142 | None:intergenic |
| TTGCCGAGCAAACCGGTCAC+TGG | 0.546279 | 1_1:+28749214 | None:intergenic |
| CTTAGAAACAAGATGGCTAT+GGG | 0.547628 | 1_1:-28745202 | Msa0017350:intron |
| CGCGATTATCGGTTGTAGGA+GGG | 0.549189 | 1_1:-28748763 | Msa0017350:CDS |
| GTACCCTTTGCAACCCCAGT+TGG | 0.549320 | 1_1:-28749175 | Msa0017350:CDS |
| GTTGACCCTATTGCAGCCAC+AGG | 0.552753 | 1_1:-28745112 | Msa0017350:CDS |
| GAAAGCTCAAGGTGTTTATG+TGG | 0.553581 | 1_1:-28744717 | Msa0017350:CDS |
| AGATGGGAGTAGACAGATGA+TGG | 0.557105 | 1_1:-28744684 | Msa0017350:CDS |
| CAACAATCAAAACAATGCTC+AGG | 0.557905 | 1_1:-28744840 | Msa0017350:CDS |
| TTCATGCATGACATTCTTGG+TGG | 0.560639 | 1_1:-28745067 | Msa0017350:CDS |
| TCCAATTGCAGCCACAGGAA+AGG | 0.562874 | 1_1:-28749296 | Msa0017350:CDS |
| TTTACAGCCTTGTTTGAAGG+AGG | 0.563009 | 1_1:-28744659 | Msa0017350:CDS |
| CAGGAAAGTTCAAGAATGCA+AGG | 0.563012 | 1_1:-28744556 | Msa0017350:CDS |
| TATCCCATTAGGAACTGGCT+TGG | 0.563120 | 1_1:-28744888 | Msa0017350:CDS |
| TGACGGGAGTAGACAGATGA+TGG | 0.563922 | 1_1:-28748867 | Msa0017350:intron |
| ATTGCCAAGGGAGCTATAGT+TGG | 0.564296 | 1_1:+28745175 | None:intergenic |
| GTTTGGTGCAAACGAAGTAC+CGG | 0.565262 | 1_1:+28744865 | None:intergenic |
| ATTGATCCAATTGCAGCCAC+AGG | 0.569919 | 1_1:-28749301 | Msa0017350:CDS |
| ATGTGGCAAGTTCAGCAGAT+GGG | 0.570332 | 1_1:-28744700 | Msa0017350:CDS |
| GTCACGATTATCTGTAATAG+GGG | 0.572741 | 1_1:-28744582 | Msa0017350:CDS |
| CCAGGACAGATTGCCACCGA+TGG | 0.577534 | 1_1:-28744503 | Msa0017350:CDS |
| CAAATGGTTGGGAAAGCTCA+AGG | 0.578447 | 1_1:-28744728 | Msa0017350:CDS |
| CCAGTAACACCATTAACAGT+AGG | 0.579036 | 1_1:+28749100 | None:intergenic |
| CAGTTAACGTTAGGACCTGA+TGG | 0.580607 | 1_1:-28749004 | Msa0017350:CDS |
| AAATTGTTGGAAAGGGTCAG+GGG | 0.581072 | 1_1:-28748910 | Msa0017350:CDS |
| TTGGTGTAGCAAAAGGCACT+TGG | 0.582992 | 1_1:+28744990 | None:intergenic |
| TTACAGCCTTGTTTGAAGGA+GGG | 0.586353 | 1_1:-28744658 | Msa0017350:CDS |
| TATGTAGCAAGTTCGGCTGA+CGG | 0.590795 | 1_1:-28748884 | Msa0017350:CDS |
| CGGTGGCAATCTGTCCTGGT+GGG | 0.590855 | 1_1:+28744507 | None:intergenic |
| TATGTGGCAAGTTCAGCAGA+TGG | 0.595878 | 1_1:-28744701 | Msa0017350:CDS |
| CTGAGACCTCTTATCCCACC+AGG | 0.596655 | 1_1:-28744521 | Msa0017350:CDS |
| AAAAGCAACCAACATTGCCA+AGG | 0.599709 | 1_1:+28745162 | None:intergenic |
| AATGATTGGTTCTTTCCCTG+TGG | 0.602584 | 1_1:+28745096 | None:intergenic |
| TATCGGTTGTAGGAGGGACG+GGG | 0.603964 | 1_1:-28748757 | Msa0017350:CDS |
| CCAACGGCTCGACCAGTGAC+CGG | 0.606503 | 1_1:-28749226 | Msa0017350:CDS |
| TCGGTGGCAATCTGTCCTGG+TGG | 0.607409 | 1_1:+28744506 | None:intergenic |
| ATATTCCCCTCCTTCAAACA+AGG | 0.608813 | 1_1:+28744652 | None:intergenic |
| CCGGTAACGCCATTGACAGT+GGG | 0.609739 | 1_1:+28744911 | None:intergenic |
| ACCGGTAACGCCATTGACAG+TGG | 0.618135 | 1_1:+28744910 | None:intergenic |
| TTGGAATGTTGAATCCAACT+GGG | 0.618283 | 1_1:+28749161 | None:intergenic |
| TAACAATGTCTCAGCACCAT+CGG | 0.622282 | 1_1:+28744487 | None:intergenic |
| ATTATCGGTTGTAGGAGGGA+CGG | 0.632538 | 1_1:-28748759 | Msa0017350:CDS |
| AGGAAAGTTCAAGAATGCAA+GGG | 0.639684 | 1_1:-28744555 | Msa0017350:CDS |
| GGGATTGGAATCCCACCTTG+TGG | 0.644979 | 1_1:+28744953 | None:intergenic |
| ATAGGATTCAACACTCCACA+AGG | 0.647615 | 1_1:-28744968 | Msa0017350:CDS |
| AAAGCAACCAACATTGCCAA+GGG | 0.653151 | 1_1:+28745163 | None:intergenic |
| GATTCAACACTCCACAAGGT+GGG | 0.655383 | 1_1:-28744964 | Msa0017350:CDS |
| TCTTGGTGGCAGTAACCCAA+CGG | 0.656099 | 1_1:-28749242 | Msa0017350:CDS |
| TCAGTAGCAACCTGTCCAGG+TGG | 0.657359 | 1_1:+28748689 | None:intergenic |
| CAATGTCTCAGCACCATCGG+TGG | 0.660853 | 1_1:+28744490 | None:intergenic |
| AATTGTTGGAAAGGGTCAGG+GGG | 0.661911 | 1_1:-28748909 | Msa0017350:CDS |
| GGATTCAACACTCCACAAGG+TGG | 0.671295 | 1_1:-28744965 | Msa0017350:CDS |
| TTGACCCTATTGCAGCCACA+GGG | 0.674527 | 1_1:-28745111 | Msa0017350:CDS |
| ATGGTGCTGAGACATTGTTA+AGG | 0.677347 | 1_1:-28744484 | Msa0017350:CDS |
| TTGTTGGGTAACATATACAG+TGG | 0.686502 | 1_1:-28745013 | Msa0017350:CDS |
| TATTACAGATAATCGTGACA+TGG | 0.690977 | 1_1:+28744586 | None:intergenic |
| TCACGATTATCTGTAATAGG+GGG | 0.693325 | 1_1:-28744581 | Msa0017350:CDS |
| ATGGTGCTGAGACTTTGTTG+AGG | 0.693982 | 1_1:-28748667 | Msa0017350:CDS |
| TCTTGGTGGAAGTAACCCAA+CGG | 0.712556 | 1_1:-28745053 | Msa0017350:CDS |
| TTGCTCGGCAACATATACAG+TGG | 0.727097 | 1_1:-28749202 | Msa0017350:CDS |
| TGGAATGTTGAATCCAACTG+GGG | 0.746650 | 1_1:+28749162 | None:intergenic |
| GAAAGTTCAAGAATGCAAGG+GGG | 0.779865 | 1_1:-28744553 | Msa0017350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATTAATAGTTTAAATT+TGG | - | chr1_1:28745961-28745980 | Msa0017350:intron | 10.0% |
| !! | TCTATTAATAGTTTAAATTT+GGG | - | chr1_1:28745962-28745981 | Msa0017350:intron | 10.0% |
| !! | TAAAATTACAAAAAAATAAC+TGG | - | chr1_1:28746000-28746019 | Msa0017350:intron | 10.0% |
| !!! | GATTATATATTTTAATTTTC+AGG | + | chr1_1:28746287-28746306 | None:intergenic | 10.0% |
| !!! | TCCAATTTTTTTAAAAAATT+CGG | + | chr1_1:28746582-28746601 | None:intergenic | 10.0% |
| !!! | CCAATTTTTTAAAAAAATTT+CGG | + | chr1_1:28746712-28746731 | None:intergenic | 10.0% |
| !! | AAAAATAAAAAACAAAATTC+TGG | - | chr1_1:28746764-28746783 | Msa0017350:intron | 10.0% |
| !! | AAAATAAAAAACAAAATTCT+GGG | - | chr1_1:28746765-28746784 | Msa0017350:intron | 10.0% |
| !!! | CGAATTTTTTTTAAAAAAAT+TGG | + | chr1_1:28746931-28746950 | None:intergenic | 10.0% |
| !!! | CCAATTTTTTTAAAAAAATT+CGG | - | chr1_1:28747060-28747079 | Msa0017350:intron | 10.0% |
| !!! | CACATATTTTAATTTTATTT+TGG | - | chr1_1:28747523-28747542 | Msa0017350:intron | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+GGG | - | chr1_1:28747547-28747566 | Msa0017350:intron | 10.0% |
| !! | GAAATAAAAAAAATATAATG+AGG | - | chr1_1:28747709-28747728 | Msa0017350:intron | 10.0% |
| !!! | TATATTTTTAAAAATAGACT+TGG | - | chr1_1:28748293-28748312 | Msa0017350:intron | 10.0% |
| !! | AAAATTAACAACTAAATACA+AGG | + | chr1_1:28745311-28745330 | None:intergenic | 15.0% |
| !! | TGGATAATAAATGAATAAAA+TGG | - | chr1_1:28745429-28745448 | Msa0017350:intron | 15.0% |
| !!! | AAGATAAAATACTTTTTCTT+TGG | - | chr1_1:28745662-28745681 | Msa0017350:intron | 15.0% |
| !!! | AGATAAAATACTTTTTCTTT+GGG | - | chr1_1:28745663-28745682 | Msa0017350:intron | 15.0% |
| !! | TTAAGCCATTTATTTATTAA+GGG | + | chr1_1:28746345-28746364 | None:intergenic | 15.0% |
| !! | ATTAAGCCATTTATTTATTA+AGG | + | chr1_1:28746346-28746365 | None:intergenic | 15.0% |
| !!! | TAAAAAATTCGGTATTTTTT+TGG | + | chr1_1:28746571-28746590 | None:intergenic | 15.0% |
| !!! | ACCGAATTTTTTAAAAAAAT+TGG | - | chr1_1:28746578-28746597 | Msa0017350:intron | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | - | chr1_1:28746610-28746629 | Msa0017350:intron | 15.0% |
| !!! | CCGAAATTTTTTTAAAAAAT+TGG | - | chr1_1:28746709-28746728 | Msa0017350:intron | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | - | chr1_1:28746610-28746629 | Msa0017350:intron | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | + | chr1_1:28746610-28746629 | None:intergenic | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | + | chr1_1:28746610-28746629 | None:intergenic | 15.0% |
| !!! | CCGAATTTTTTTAAAAAAAT+TGG | + | chr1_1:28747063-28747082 | None:intergenic | 15.0% |
| !! | CTCATTAATTGATTAAAAAA+AGG | - | chr1_1:28747144-28747163 | Msa0017350:intron | 15.0% |
| !!! | ATGAATTTAGTTTTCTTAAA+TGG | + | chr1_1:28747384-28747403 | None:intergenic | 15.0% |
| !!! | GTTGTTTCATATTTTATAAT+AGG | - | chr1_1:28747546-28747565 | Msa0017350:intron | 15.0% |
| !!! | TGTTTCATATTTTATAATAG+GGG | - | chr1_1:28747548-28747567 | Msa0017350:intron | 15.0% |
| !!! | TCTAATATATTTTGAATAAG+AGG | - | chr1_1:28747810-28747829 | Msa0017350:intron | 15.0% |
| !!! | CTAATATATTTTGAATAAGA+GGG | - | chr1_1:28747811-28747830 | Msa0017350:intron | 15.0% |
| !!! | TAATATATTTTGAATAAGAG+GGG | - | chr1_1:28747812-28747831 | Msa0017350:intron | 15.0% |
| !! | AAATAAGTAAGAAAACATAA+AGG | - | chr1_1:28747949-28747968 | Msa0017350:intron | 15.0% |
| !!! | TGATTGTTATTGTTATTGTT+TGG | + | chr1_1:28744748-28744767 | None:intergenic | 20.0% |
| !!! | TTTTATGGTTTGTATAAGAT+TGG | - | chr1_1:28744985-28745004 | Msa0017350:CDS | 20.0% |
| !! | GATGATTATTATTATCAGTT+TGG | - | chr1_1:28745224-28745243 | Msa0017350:intron | 20.0% |
| !!! | TAGTTGTTAATTTTGCAATA+TGG | - | chr1_1:28745317-28745336 | Msa0017350:intron | 20.0% |
| !!! | AGTTGTTAATTTTGCAATAT+GGG | - | chr1_1:28745318-28745337 | Msa0017350:intron | 20.0% |
| !!! | TGATATATAAAGCACTAATA+TGG | - | chr1_1:28745391-28745410 | Msa0017350:intron | 20.0% |
| !! | GATTGCAGTAAATATTTAAT+TGG | + | chr1_1:28745552-28745571 | None:intergenic | 20.0% |
| !! | TTAAAATTTCGTGACATATT+TGG | - | chr1_1:28746033-28746052 | Msa0017350:intron | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | + | chr1_1:28747842-28747861 | None:intergenic | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | + | chr1_1:28747841-28747860 | None:intergenic | 20.0% |
| !!! | AGTGTATATTTTAACATAAG+AGG | + | chr1_1:28747840-28747859 | None:intergenic | 20.0% |
| !!! | ATATTTTAATTTTCAGGGAA+GGG | + | chr1_1:28746281-28746300 | None:intergenic | 20.0% |
| !!! | TATATTTTAATTTTCAGGGA+AGG | + | chr1_1:28746282-28746301 | None:intergenic | 20.0% |
| !!! | ACAAAATCAAGATTTTATTC+TGG | - | chr1_1:28746790-28746809 | Msa0017350:intron | 20.0% |
| !!! | CAAAATCAAGATTTTATTCT+GGG | - | chr1_1:28746791-28746810 | Msa0017350:intron | 20.0% |
| !! | AGTGTAGTTCATATTTATTT+AGG | + | chr1_1:28747306-28747325 | None:intergenic | 20.0% |
| !!! | AATTTAGTTTTCTTAAATGG+TGG | + | chr1_1:28747381-28747400 | None:intergenic | 20.0% |
| !! | TTCAGAAAAAAATAGTATTG+CGG | + | chr1_1:28747654-28747673 | None:intergenic | 20.0% |
| !!! | AGTGTATATTTTAACATAAG+AGG | - | chr1_1:28747840-28747859 | Msa0017350:intron | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | - | chr1_1:28747841-28747860 | Msa0017350:intron | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | - | chr1_1:28747842-28747861 | Msa0017350:intron | 20.0% |
| !! | TAGAATTTGATCCATTTAAA+AGG | - | chr1_1:28747919-28747938 | Msa0017350:intron | 20.0% |
| !! | AGAATTTGATCCATTTAAAA+GGG | - | chr1_1:28747920-28747939 | Msa0017350:intron | 20.0% |
| !!! | ATTTTTCTATCCCTTTTAAA+TGG | + | chr1_1:28747933-28747952 | None:intergenic | 20.0% |
| !!! | AAGTAATTTTACAGAGAATT+TGG | - | chr1_1:28747999-28748018 | Msa0017350:intron | 20.0% |
| !! | GATAAACAATAAATGATGTT+TGG | - | chr1_1:28748062-28748081 | Msa0017350:intron | 20.0% |
| !! | ATTACGAAATCATTTAGAAA+AGG | - | chr1_1:28748177-28748196 | Msa0017350:intron | 20.0% |
| !! | TTACGAAATCATTTAGAAAA+GGG | - | chr1_1:28748178-28748197 | Msa0017350:intron | 20.0% |
| !! | AATTCATCGTAAAAACAAAT+TGG | + | chr1_1:28748229-28748248 | None:intergenic | 20.0% |
| !! | GTATATTATATAACTCAATG+AGG | + | chr1_1:28748263-28748282 | None:intergenic | 20.0% |
| !!! | AGAAATATTGACTACAATTT+TGG | - | chr1_1:28748379-28748398 | Msa0017350:intron | 20.0% |
| !!! | TTTTATGGTTTGTATAAGAT+AGG | - | chr1_1:28744985-28745004 | Msa0017350:CDS | 20.0% |
| !! | GGTGATAGTTTGAATTTTTA+TGG | - | chr1_1:28744970-28744989 | Msa0017350:CDS | 25.0% |
| !!! | TTAGTTTGTTTGCATGTATT+TGG | - | chr1_1:28745259-28745278 | Msa0017350:intron | 25.0% |
| ! | ACAAAGTTATTCTTCAATAC+AGG | - | chr1_1:28745596-28745615 | Msa0017350:intron | 25.0% |
| !! | ATGTTTTCAATTTCTTGAAC+CGG | + | chr1_1:28745628-28745647 | None:intergenic | 25.0% |
| ! | ATAGTTAAACTACATCACTT+TGG | - | chr1_1:28745740-28745759 | Msa0017350:intron | 25.0% |
| ! | TAGTTAAACTACATCACTTT+GGG | - | chr1_1:28745741-28745760 | Msa0017350:intron | 25.0% |
| !!! | AAGTATGCACTTTTTAACTT+AGG | + | chr1_1:28745865-28745884 | None:intergenic | 25.0% |
| !! | ATGATAATGATGATGATAGA+AGG | - | chr1_1:28746077-28746096 | Msa0017350:intron | 25.0% |
| ! | TGTAATTTAAGCATCTTTGA+GGG | + | chr1_1:28746225-28746244 | None:intergenic | 25.0% |
| !!! | TATTTTAATTTTCAGGGAAG+GGG | + | chr1_1:28746280-28746299 | None:intergenic | 25.0% |
| ! | TTGTAATTCAAGCATCTTAT+CGG | + | chr1_1:28746316-28746335 | None:intergenic | 25.0% |
| ! | AAATAATAGAATTACACACG+TGG | + | chr1_1:28747119-28747138 | None:intergenic | 25.0% |
| ! | AAATAATAGAATTACACACG+TGG | - | chr1_1:28747119-28747138 | Msa0017350:intron | 25.0% |
| ! | TCAGAAAAAAATAGTATTGC+GGG | + | chr1_1:28747653-28747672 | None:intergenic | 25.0% |
| ! | AATGTAATTATGTTTCTCTC+AGG | - | chr1_1:28747768-28747787 | Msa0017350:intron | 25.0% |
| ! | ATGTAATTATGTTTCTCTCA+GGG | - | chr1_1:28747769-28747788 | Msa0017350:intron | 25.0% |
| ! | TATTGTTTATCGTTGTCTTT+AGG | + | chr1_1:28748053-28748072 | None:intergenic | 25.0% |
| ! | TACGAAATCATTTAGAAAAG+GGG | - | chr1_1:28748179-28748198 | Msa0017350:intron | 25.0% |
| !!! | TTTTAAAAATAGACTTGGCT+TGG | - | chr1_1:28748298-28748317 | Msa0017350:intron | 25.0% |
| !! | TAGTCAATATTTCTGATTAG+TGG | + | chr1_1:28748373-28748392 | None:intergenic | 25.0% |
| ! | TGAAGTTGTTGAAATTTAAC+AGG | + | chr1_1:28748423-28748442 | None:intergenic | 25.0% |
| ! | AGTCTTGGTATTATATAAGA+GGG | + | chr1_1:28748488-28748507 | None:intergenic | 25.0% |
| ! | AAGTCTTGGTATTATATAAG+AGG | + | chr1_1:28748489-28748508 | None:intergenic | 25.0% |
| ! | GAAATAACTTAGAAACAAGA+TGG | - | chr1_1:28748573-28748592 | Msa0017350:intron | 25.0% |
| GATTAACACCATTTGCATTA+GGG | + | chr1_1:28744663-28744682 | None:intergenic | 30.0% | |
| AACAATGTTCAGTTAACGTT+AGG | - | chr1_1:28744769-28744788 | Msa0017350:CDS | 30.0% | |
| !! | GTTTTTACAGCACTTTTTGA+AGG | - | chr1_1:28744937-28744956 | Msa0017350:CDS | 30.0% |
| GGAAGTTTAAGTATGCTAAA+GGG | - | chr1_1:28745046-28745065 | Msa0017350:CDS | 30.0% | |
| ! | AATTTTGCAATATGGGAACT+TGG | - | chr1_1:28745325-28745344 | Msa0017350:intron | 30.0% |
| ! | TATGGACTTCACTTTGAAAA+TGG | - | chr1_1:28745409-28745428 | Msa0017350:intron | 30.0% |
| ACTTAGGTGAAAATGACATT+GGG | + | chr1_1:28745849-28745868 | None:intergenic | 30.0% | |
| AACTTAGGTGAAAATGACAT+TGG | + | chr1_1:28745850-28745869 | None:intergenic | 30.0% | |
| !! | AGTTTAAATTTGGGTTTTCG+TGG | - | chr1_1:28745971-28745990 | Msa0017350:intron | 30.0% |
| GTAATTTAAGCATCTTTGAG+GGG | + | chr1_1:28746224-28746243 | None:intergenic | 30.0% | |
| GTGTAATTTAAGCATCTTTG+AGG | + | chr1_1:28746226-28746245 | None:intergenic | 30.0% | |
| !!! | TATTTTAACATAAGAGGGGA+GGG | + | chr1_1:28747846-28747865 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAAGAGGGG+AGG | + | chr1_1:28747845-28747864 | None:intergenic | 30.0% |
| TGTAATTCAAGCATCTTATC+GGG | + | chr1_1:28746315-28746334 | None:intergenic | 30.0% | |
| CATTTATTTATTAAGGGAGG+GGG | + | chr1_1:28746339-28746358 | None:intergenic | 30.0% | |
| CCATTTATTTATTAAGGGAG+GGG | + | chr1_1:28746340-28746359 | None:intergenic | 30.0% | |
| GCCATTTATTTATTAAGGGA+GGG | + | chr1_1:28746341-28746360 | None:intergenic | 30.0% | |
| AGCCATTTATTTATTAAGGG+AGG | + | chr1_1:28746342-28746361 | None:intergenic | 30.0% | |
| TGTAATTATGTTTCTCTCAG+GGG | - | chr1_1:28747770-28747789 | Msa0017350:intron | 30.0% | |
| !! | TATATTTTGAATAAGAGGGG+AGG | - | chr1_1:28747815-28747834 | Msa0017350:intron | 30.0% |
| !! | ATATTTTGAATAAGAGGGGA+GGG | - | chr1_1:28747816-28747835 | Msa0017350:intron | 30.0% |
| TGTAATTCAAGCATCTTTGA+GGG | - | chr1_1:28747872-28747891 | Msa0017350:intron | 30.0% | |
| GAGTTATGACTACAGATAAA+TGG | - | chr1_1:28748023-28748042 | Msa0017350:intron | 30.0% | |
| ! | TGTGGTAATGAATCTTTGTT+TGG | + | chr1_1:28748530-28748549 | None:intergenic | 30.0% |
| TAGATACTGGTATTTCTTTG+TGG | + | chr1_1:28748548-28748567 | None:intergenic | 30.0% | |
| ! | GTTATTTCAGATGTAGATAC+TGG | + | chr1_1:28748561-28748580 | None:intergenic | 30.0% |
| !!! | TTGTTTTGATTGTTGCTGTT+TGG | + | chr1_1:28748937-28748956 | None:intergenic | 30.0% |
| TATTACAGATAATCGTGACA+TGG | + | chr1_1:28749199-28749218 | None:intergenic | 30.0% | |
| ATGTCACGATTATCTGTAAT+AGG | - | chr1_1:28749198-28749217 | Msa0017350:CDS | 30.0% | |
| TGTCACGATTATCTGTAATA+GGG | - | chr1_1:28749199-28749218 | Msa0017350:CDS | 30.0% | |
| TGCATGAACAACTCAATGAT+TGG | + | chr1_1:28744514-28744533 | None:intergenic | 35.0% | |
| TTGTTCATGCATGACATTCT+TGG | - | chr1_1:28744523-28744542 | Msa0017350:CDS | 35.0% | |
| TTGGAATGTTGAATCCAACT+GGG | + | chr1_1:28744624-28744643 | None:intergenic | 35.0% | |
| GGATTAACACCATTTGCATT+AGG | + | chr1_1:28744664-28744683 | None:intergenic | 35.0% | |
| GGTGTTAATCCTACTGTTAA+TGG | - | chr1_1:28744673-28744692 | Msa0017350:CDS | 35.0% | |
| TTAACATCTCAACCAGAGTT+AGG | - | chr1_1:28744844-28744863 | Msa0017350:CDS | 35.0% | |
| ACAATTTGTGAACCTAACTC+TGG | + | chr1_1:28744859-28744878 | None:intergenic | 35.0% | |
| GAGTTAGGTTCACAAATTGT+TGG | - | chr1_1:28744859-28744878 | Msa0017350:CDS | 35.0% | |
| AGGTTCACAAATTGTTGGAA+AGG | - | chr1_1:28744864-28744883 | Msa0017350:CDS | 35.0% | |
| GGTTCACAAATTGTTGGAAA+GGG | - | chr1_1:28744865-28744884 | Msa0017350:CDS | 35.0% | |
| !! | TTTACAGCACTTTTTGAAGG+AGG | - | chr1_1:28744940-28744959 | Msa0017350:CDS | 35.0% |
| !! | TTACAGCACTTTTTGAAGGA+GGG | - | chr1_1:28744941-28744960 | Msa0017350:CDS | 35.0% |
| AAGTACTATGTCGCGATTAT+CGG | - | chr1_1:28745008-28745027 | Msa0017350:CDS | 35.0% | |
| GGGAAGTTTAAGTATGCTAA+AGG | - | chr1_1:28745045-28745064 | Msa0017350:CDS | 35.0% | |
| !! | GAAGTACTGATGAGTATTGT+TGG | - | chr1_1:28745152-28745171 | Msa0017350:CDS | 35.0% |
| GTATTGTTGGTGTATTGTGA+AGG | - | chr1_1:28745165-28745184 | Msa0017350:CDS | 35.0% | |
| ! | TCTTTGGGTGAAAGATGTTT+TGG | - | chr1_1:28745678-28745697 | Msa0017350:intron | 35.0% |
| ! | ATGCTACTTGCATTGAATAG+TGG | + | chr1_1:28745711-28745730 | None:intergenic | 35.0% |
| CTTAGGTGAAAATGACATTG+GGG | + | chr1_1:28745848-28745867 | None:intergenic | 35.0% | |
| !! | GATAGTTTGTTTGATGTTCC+TGG | - | chr1_1:28745918-28745937 | Msa0017350:intron | 35.0% |
| TAGAAACTTCGATACTTACC+AGG | + | chr1_1:28745939-28745958 | None:intergenic | 35.0% | |
| TCATTGATGCATAGTAGAGT+GGG | - | chr1_1:28746101-28746120 | Msa0017350:intron | 35.0% | |
| !! | ATTTTAACATAAGAGGGGAG+GGG | + | chr1_1:28747847-28747866 | None:intergenic | 35.0% |
| GTAATTCAAGCATCTTATCG+GGG | + | chr1_1:28746314-28746333 | None:intergenic | 35.0% | |
| CCCCTCCCTTAATAAATAAA+TGG | - | chr1_1:28746337-28746356 | Msa0017350:intron | 35.0% | |
| CACAATTGGCAAAATATAGG+GGG | + | chr1_1:28747264-28747283 | None:intergenic | 35.0% | |
| GCACAATTGGCAAAATATAG+GGG | + | chr1_1:28747263-28747282 | None:intergenic | 35.0% | |
| CGCACAATTGGCAAAATATA+GGG | + | chr1_1:28747262-28747281 | None:intergenic | 35.0% | |
| TCGCACAATTGGCAAAATAT+AGG | + | chr1_1:28747261-28747280 | None:intergenic | 35.0% | |
| ! | TTTTGCCAATTGTGCGATTT+TGG | - | chr1_1:28746385-28746404 | Msa0017350:intron | 35.0% |
| AATCGCTCGTTTCAAACTAT+GGG | + | chr1_1:28747230-28747249 | None:intergenic | 35.0% | |
| AAATCGCTCGTTTCAAACTA+TGG | + | chr1_1:28747229-28747248 | None:intergenic | 35.0% | |
| !! | TAGTTTGAAACGAGCGATTT+TGG | - | chr1_1:28746414-28746433 | Msa0017350:intron | 35.0% |
| ! | TTTCCCCCTTTCTGATTTTA+TGG | - | chr1_1:28746447-28746466 | Msa0017350:intron | 35.0% |
| ACATCAACACCAAATGTCAT+GGG | + | chr1_1:28746475-28746494 | None:intergenic | 35.0% | |
| ! | TTTCCCCCTTTCTGATTTTA+TGG | + | chr1_1:28746447-28746466 | None:intergenic | 35.0% |
| !! | TAGTTTGAAACGAGCGATTT+TGG | + | chr1_1:28746414-28746433 | None:intergenic | 35.0% |
| AAATCGCTCGTTTCAAACTA+TGG | - | chr1_1:28747229-28747248 | Msa0017350:intron | 35.0% | |
| AATCGCTCGTTTCAAACTAT+GGG | - | chr1_1:28747230-28747249 | Msa0017350:intron | 35.0% | |
| ! | TTTTGCCAATTGTGCGATTT+TGG | + | chr1_1:28746385-28746404 | None:intergenic | 35.0% |
| TCGCACAATTGGCAAAATAT+AGG | - | chr1_1:28747261-28747280 | Msa0017350:intron | 35.0% | |
| CGCACAATTGGCAAAATATA+GGG | - | chr1_1:28747262-28747281 | Msa0017350:intron | 35.0% | |
| GCACAATTGGCAAAATATAG+GGG | - | chr1_1:28747263-28747282 | Msa0017350:intron | 35.0% | |
| CACAATTGGCAAAATATAGG+GGG | - | chr1_1:28747264-28747283 | Msa0017350:intron | 35.0% | |
| AGTGTAGATTTCAACGTAAG+AGG | - | chr1_1:28747738-28747757 | Msa0017350:intron | 35.0% | |
| GTGTAGATTTCAACGTAAGA+GGG | - | chr1_1:28747739-28747758 | Msa0017350:intron | 35.0% | |
| TGTAGATTTCAACGTAAGAG+GGG | - | chr1_1:28747740-28747759 | Msa0017350:intron | 35.0% | |
| !! | TATTTTGAATAAGAGGGGAG+GGG | - | chr1_1:28747817-28747836 | Msa0017350:intron | 35.0% |
| !! | ATTTTAACATAAGAGGGGAG+TGG | - | chr1_1:28747847-28747866 | Msa0017350:intron | 35.0% |
| GTGTAATTCAAGCATCTTTG+AGG | - | chr1_1:28747871-28747890 | Msa0017350:intron | 35.0% | |
| GTAATTCAAGCATCTTTGAG+GGG | - | chr1_1:28747873-28747892 | Msa0017350:intron | 35.0% | |
| AATCTCAAGTCAATAGCTAG+TGG | + | chr1_1:28748112-28748131 | None:intergenic | 35.0% | |
| GTTGATTGAAATGCAAGTCT+TGG | + | chr1_1:28748503-28748522 | None:intergenic | 35.0% | |
| ACTTAGAAACAAGATGGCTA+TGG | - | chr1_1:28748579-28748598 | Msa0017350:intron | 35.0% | |
| CTTAGAAACAAGATGGCTAT+GGG | - | chr1_1:28748580-28748599 | Msa0017350:intron | 35.0% | |
| TGCATGAACAACTCAATGAT+TGG | + | chr1_1:28744514-28744533 | None:intergenic | 35.0% | |
| TTGTTCATGCATGACATTCT+TGG | - | chr1_1:28744523-28744542 | Msa0017350:CDS | 35.0% | |
| TTGTTGGGTAACATATACAG+TGG | - | chr1_1:28748769-28748788 | Msa0017350:CDS | 35.0% | |
| AATCCTATTGGTGTAGCAAA+AGG | + | chr1_1:28748802-28748821 | None:intergenic | 35.0% | |
| ATTCCAATCCCTAATGCAAA+TGG | - | chr1_1:28748841-28748860 | Msa0017350:intron | 35.0% | |
| GAATAGCACCATTTGCATTA+GGG | + | chr1_1:28748852-28748871 | None:intergenic | 35.0% | |
| CAACAATCAAAACAATGCTC+AGG | - | chr1_1:28748942-28748961 | Msa0017350:CDS | 35.0% | |
| ACTAACATCTCAACCTGAAT+TGG | - | chr1_1:28749026-28749045 | Msa0017350:CDS | 35.0% | |
| CTAACATCTCAACCTGAATT+GGG | - | chr1_1:28749027-28749046 | Msa0017350:CDS | 35.0% | |
| AATTGGGTTCTCAAATGGTT+GGG | - | chr1_1:28749043-28749062 | Msa0017350:CDS | 35.0% | |
| !! | GTATTTACAGCCTTGTTTGA+AGG | - | chr1_1:28749120-28749139 | Msa0017350:CDS | 35.0% |
| ! | GGAGATAGCTTGAACTTTTA+TGG | - | chr1_1:28749153-28749172 | Msa0017350:CDS | 35.0% |
| GTCACGATTATCTGTAATAG+GGG | - | chr1_1:28749200-28749219 | Msa0017350:CDS | 35.0% | |
| TCACGATTATCTGTAATAGG+GGG | - | chr1_1:28749201-28749220 | Msa0017350:CDS | 35.0% | |
| AGGAAAGTTCAAGAATGCAA+GGG | - | chr1_1:28749227-28749246 | Msa0017350:CDS | 35.0% | |
| ! | AATGATTGGTTCCTTTCCTG+TGG | + | chr1_1:28744500-28744519 | None:intergenic | 40.0% |
| TTCATGCATGACATTCTTGG+TGG | - | chr1_1:28744526-28744545 | Msa0017350:CDS | 40.0% | |
| TGGAATGTTGAATCCAACTG+GGG | + | chr1_1:28744623-28744642 | None:intergenic | 40.0% | |
| CTTGGAATGTTGAATCCAAC+TGG | + | chr1_1:28744625-28744644 | None:intergenic | 40.0% | |
| ATGCCAATCCCTAATGCAAA+TGG | - | chr1_1:28744652-28744671 | Msa0017350:CDS | 40.0% | |
| ACACCATTTGCATTAGGGAT+TGG | + | chr1_1:28744658-28744677 | None:intergenic | 40.0% | |
| CCAGTAACACCATTAACAGT+AGG | + | chr1_1:28744685-28744704 | None:intergenic | 40.0% | |
| !! | CCTACTGTTAATGGTGTTAC+TGG | - | chr1_1:28744682-28744701 | Msa0017350:CDS | 40.0% |
| CAGCTAAACCAGTTCCTAAA+GGG | + | chr1_1:28744711-28744730 | None:intergenic | 40.0% | |
| AATCCTAATCCAAGTCCATC+AGG | + | chr1_1:28744796-28744815 | None:intergenic | 40.0% | |
| ! | GATGGACTTGGATTAGGATT+TGG | - | chr1_1:28744796-28744815 | Msa0017350:CDS | 40.0% |
| ACAAATTGTTGGAAAGGGTC+AGG | - | chr1_1:28744870-28744889 | Msa0017350:CDS | 40.0% | |
| CAAATTGTTGGAAAGGGTCA+GGG | - | chr1_1:28744871-28744890 | Msa0017350:CDS | 40.0% | |
| AAATTGTTGGAAAGGGTCAG+GGG | - | chr1_1:28744872-28744891 | Msa0017350:CDS | 40.0% | |
| !! | TACAGCACTTTTTGAAGGAG+GGG | - | chr1_1:28744942-28744961 | Msa0017350:CDS | 40.0% |
| TCTTCAATACAGGTCAACTC+CGG | - | chr1_1:28745606-28745625 | Msa0017350:intron | 40.0% | |
| CTACTTGCATTGAATAGTGG+AGG | + | chr1_1:28745708-28745727 | None:intergenic | 40.0% | |
| !! | ACTTTGGGACAATTCAGACA+AGG | - | chr1_1:28745756-28745775 | Msa0017350:intron | 40.0% |
| ATCGCAAGATCTCATGTATG+AGG | - | chr1_1:28745791-28745810 | Msa0017350:intron | 40.0% | |
| CTCATTGATGCATAGTAGAG+TGG | - | chr1_1:28746100-28746119 | Msa0017350:intron | 40.0% | |
| CATTGATGCATAGTAGAGTG+GGG | - | chr1_1:28746102-28746121 | Msa0017350:intron | 40.0% | |
| ! | TTTAAGCATCTTTGAGGGGA+GGG | + | chr1_1:28746220-28746239 | None:intergenic | 40.0% |
| ! | ATTTAAGCATCTTTGAGGGG+AGG | + | chr1_1:28746221-28746240 | None:intergenic | 40.0% |
| ATCGCTCGTTTCAAACTATG+GGG | + | chr1_1:28747231-28747250 | None:intergenic | 40.0% | |
| TCAGAAAGGGGGAAAACTAT+GGG | + | chr1_1:28747201-28747220 | None:intergenic | 40.0% | |
| ATCAGAAAGGGGGAAAACTA+TGG | + | chr1_1:28747200-28747219 | None:intergenic | 40.0% | |
| GGACCATAAAATCAGAAAGG+GGG | + | chr1_1:28747190-28747209 | None:intergenic | 40.0% | |
| GGGACCATAAAATCAGAAAG+GGG | + | chr1_1:28747189-28747208 | None:intergenic | 40.0% | |
| GGGGACCATAAAATCAGAAA+GGG | + | chr1_1:28747188-28747207 | None:intergenic | 40.0% | |
| TGGGGACCATAAAATCAGAA+AGG | + | chr1_1:28747187-28747206 | None:intergenic | 40.0% | |
| TTTATGGTCCCCATGACATT+TGG | - | chr1_1:28746463-28746482 | Msa0017350:intron | 40.0% | |
| CATCAACACCAAATGTCATG+GGG | + | chr1_1:28746474-28746493 | None:intergenic | 40.0% | |
| CACATCAACACCAAATGTCA+TGG | + | chr1_1:28746476-28746495 | None:intergenic | 40.0% | |
| ACATCAGCACCAAATGTCAT+GGG | - | chr1_1:28747168-28747187 | Msa0017350:intron | 40.0% | |
| TTTATGGTCCCCATGACATT+TGG | + | chr1_1:28746463-28746482 | None:intergenic | 40.0% | |
| TGGGGACCATAAAATCAGAA+AGG | - | chr1_1:28747187-28747206 | Msa0017350:intron | 40.0% | |
| GGGGACCATAAAATCAGAAA+GGG | - | chr1_1:28747188-28747207 | Msa0017350:intron | 40.0% | |
| GGGACCATAAAATCAGAAAG+GGG | - | chr1_1:28747189-28747208 | Msa0017350:intron | 40.0% | |
| GGACCATAAAATCAGAAAGG+GGG | - | chr1_1:28747190-28747209 | Msa0017350:intron | 40.0% | |
| ATCAGAAAGGGGGAAAACTA+TGG | - | chr1_1:28747200-28747219 | Msa0017350:intron | 40.0% | |
| TCAGAAAGGGGGAAAACTAT+GGG | - | chr1_1:28747201-28747220 | Msa0017350:intron | 40.0% | |
| ATCGCTCGTTTCAAACTATG+GGG | - | chr1_1:28747231-28747250 | Msa0017350:intron | 40.0% | |
| AATTATGTTTCTCTCAGGGG+AGG | - | chr1_1:28747773-28747792 | Msa0017350:intron | 40.0% | |
| ! | GAATGAAGAGTGTGTTGAAG+TGG | + | chr1_1:28748466-28748485 | None:intergenic | 40.0% |
| ATTACCAACTATAGCTCCCT+TGG | - | chr1_1:28748603-28748622 | Msa0017350:intron | 40.0% | |
| AAAGCAACCAACATTGCCAA+GGG | + | chr1_1:28748622-28748641 | None:intergenic | 40.0% | |
| AAAAGCAACCAACATTGCCA+AGG | + | chr1_1:28748623-28748642 | None:intergenic | 40.0% | |
| ! | AATGATTGGTTCTTTCCCTG+TGG | + | chr1_1:28748689-28748708 | None:intergenic | 40.0% |
| TTCATGCATGACATTCTTGG+TGG | - | chr1_1:28744526-28744545 | Msa0017350:CDS | 40.0% | |
| TTACCCAACAAACCAGTTAC+CGG | + | chr1_1:28748760-28748779 | None:intergenic | 40.0% | |
| !! | TGTGGAGTGTTGAATCCTAT+TGG | + | chr1_1:28748814-28748833 | None:intergenic | 40.0% |
| ATAGGATTCAACACTCCACA+AGG | - | chr1_1:28748814-28748833 | Msa0017350:intron | 40.0% | |
| GGAATAGCACCATTTGCATT+AGG | + | chr1_1:28748853-28748872 | None:intergenic | 40.0% | |
| ACCTGAATTGGGTTCTCAAA+TGG | - | chr1_1:28749038-28749057 | Msa0017350:CDS | 40.0% | |
| ACCATTTGAGAACCCAATTC+AGG | + | chr1_1:28749042-28749061 | None:intergenic | 40.0% | |
| GAATTGGGTTCTCAAATGGT+TGG | - | chr1_1:28749042-28749061 | Msa0017350:CDS | 40.0% | |
| ! | GAAAGCTCAAGGTGTTTATG+TGG | - | chr1_1:28749065-28749084 | Msa0017350:CDS | 40.0% |
| !! | TTTACAGCCTTGTTTGAAGG+AGG | - | chr1_1:28749123-28749142 | Msa0017350:CDS | 40.0% |
| !! | TTACAGCCTTGTTTGAAGGA+GGG | - | chr1_1:28749124-28749143 | Msa0017350:CDS | 40.0% |
| ATATTCCCCTCCTTCAAACA+AGG | + | chr1_1:28749133-28749152 | None:intergenic | 40.0% | |
| TTGTTTGAAGGAGGGGAATA+TGG | - | chr1_1:28749132-28749151 | Msa0017350:CDS | 40.0% | |
| CAGGAAAGTTCAAGAATGCA+AGG | - | chr1_1:28749226-28749245 | Msa0017350:CDS | 40.0% | |
| GGAAAGTTCAAGAATGCAAG+GGG | - | chr1_1:28749228-28749247 | Msa0017350:CDS | 40.0% | |
| GAAAGTTCAAGAATGCAAGG+GGG | - | chr1_1:28749229-28749248 | Msa0017350:CDS | 40.0% | |
| TAACAATGTCTCAGCACCAT+CGG | + | chr1_1:28749298-28749317 | None:intergenic | 40.0% | |
| ! | ATGGTGCTGAGACATTGTTA+AGG | - | chr1_1:28749298-28749317 | Msa0017350:CDS | 40.0% |
| ATTGATCCAATTGCAGCCAC+AGG | - | chr1_1:28744481-28744500 | Msa0017350:CDS | 45.0% | |
| GTATATGTTGCCGAGCAAAC+CGG | + | chr1_1:28744578-28744597 | None:intergenic | 45.0% | |
| TTGCTCGGCAACATATACAG+TGG | - | chr1_1:28744580-28744599 | Msa0017350:CDS | 45.0% | |
| AATCCAACTGGGGTTGCAAA+GGG | + | chr1_1:28744613-28744632 | None:intergenic | 45.0% | |
| ! | GGGATTGGCATACTATCACT+TGG | + | chr1_1:28744643-28744662 | None:intergenic | 45.0% |
| !! | GGTGTTACTGGTATCCCTTT+AGG | - | chr1_1:28744694-28744713 | Msa0017350:CDS | 45.0% |
| ! | ACTGGTATCCCTTTAGGAAC+TGG | - | chr1_1:28744700-28744719 | Msa0017350:CDS | 45.0% |
| CCAGCTAAACCAGTTCCTAA+AGG | + | chr1_1:28744712-28744731 | None:intergenic | 45.0% | |
| ! | CCTTTAGGAACTGGTTTAGC+TGG | - | chr1_1:28744709-28744728 | Msa0017350:CDS | 45.0% |
| CAGTTAACGTTAGGACCTGA+TGG | - | chr1_1:28744778-28744797 | Msa0017350:CDS | 45.0% | |
| AATTGTTGGAAAGGGTCAGG+GGG | - | chr1_1:28744873-28744892 | Msa0017350:CDS | 45.0% | |
| TATGTAGCAAGTTCGGCTGA+CGG | - | chr1_1:28744898-28744917 | Msa0017350:CDS | 45.0% | |
| !! | CTTTTTGAAGGAGGGGAGTA+TGG | - | chr1_1:28744949-28744968 | Msa0017350:CDS | 45.0% |
| ! | ATGTCGCGATTATCGGTTGT+AGG | - | chr1_1:28745015-28745034 | Msa0017350:CDS | 45.0% |
| ! | ATTATCGGTTGTAGGAGGGA+CGG | - | chr1_1:28745023-28745042 | Msa0017350:CDS | 45.0% |
| ! | ATGGTGCTGAGACTTTGTTG+AGG | - | chr1_1:28745115-28745134 | Msa0017350:CDS | 45.0% |
| ! | TGAAGGTGTGTGAAAGCATG+TGG | - | chr1_1:28745182-28745201 | Msa0017350:CDS | 45.0% |
| ! | GAAGGTGTGTGAAAGCATGT+GGG | - | chr1_1:28745183-28745202 | Msa0017350:CDS | 45.0% |
| GCAATATGGGAACTTGGCTT+TGG | - | chr1_1:28745331-28745350 | Msa0017350:intron | 45.0% | |
| GGACAATTCAGACAAGGCAT+AGG | - | chr1_1:28745762-28745781 | Msa0017350:intron | 45.0% | |
| ! | TTAAGCATCTTTGAGGGGAG+GGG | + | chr1_1:28746219-28746238 | None:intergenic | 45.0% |
| TCAAGCATCTTATCGGGGAT+AGG | + | chr1_1:28746309-28746328 | None:intergenic | 45.0% | |
| CAGAAAGGGGGAAAACTATG+GGG | + | chr1_1:28747202-28747221 | None:intergenic | 45.0% | |
| CACATCAGCACCAAATGTCA+TGG | - | chr1_1:28747167-28747186 | Msa0017350:intron | 45.0% | |
| CATCAGCACCAAATGTCATG+GGG | - | chr1_1:28747169-28747188 | Msa0017350:intron | 45.0% | |
| CAGAAAGGGGGAAAACTATG+GGG | - | chr1_1:28747202-28747221 | Msa0017350:intron | 45.0% | |
| AGATTTCAACGTAAGAGGGG+AGG | - | chr1_1:28747743-28747762 | Msa0017350:intron | 45.0% | |
| GATTTCAACGTAAGAGGGGA+GGG | - | chr1_1:28747744-28747763 | Msa0017350:intron | 45.0% | |
| ATTTCAACGTAAGAGGGGAG+GGG | - | chr1_1:28747745-28747764 | Msa0017350:intron | 45.0% | |
| TGACAAGTCAGCAACATGAG+AGG | + | chr1_1:28748158-28748177 | None:intergenic | 45.0% | |
| GTGGCGTTGTTGAGATGTAA+TGG | + | chr1_1:28748354-28748373 | None:intergenic | 45.0% | |
| GTTGAAGTGGTTGTGATGCA+TGG | + | chr1_1:28748453-28748472 | None:intergenic | 45.0% | |
| ATTGCCAAGGGAGCTATAGT+TGG | + | chr1_1:28748610-28748629 | None:intergenic | 45.0% | |
| TATAGCTCCCTTGGCAATGT+TGG | - | chr1_1:28748612-28748631 | Msa0017350:intron | 45.0% | |
| TCTTGGTGGAAGTAACCCAA+CGG | - | chr1_1:28748729-28748748 | Msa0017350:CDS | 45.0% | |
| !! | TTGGTGTAGCAAAAGGCACT+TGG | + | chr1_1:28748795-28748814 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGCTACACCAAT+AGG | - | chr1_1:28748796-28748815 | Msa0017350:intron | 45.0% |
| GATTCAACACTCCACAAGGT+GGG | - | chr1_1:28748818-28748837 | Msa0017350:intron | 45.0% | |
| GCACCATTTGCATTAGGGAT+TGG | + | chr1_1:28748847-28748866 | None:intergenic | 45.0% | |
| TATCCCATTAGGAACTGGCT+TGG | - | chr1_1:28748894-28748913 | Msa0017350:CDS | 45.0% | |
| !! | GTTTGGTGCAAACGAAGTAC+CGG | + | chr1_1:28748920-28748939 | None:intergenic | 45.0% |
| AACAATGCTCAGGTGCAGTT+AGG | - | chr1_1:28748952-28748971 | Msa0017350:CDS | 45.0% | |
| AATCCTAGTCCAAGTCCATC+AGG | + | chr1_1:28748979-28748998 | None:intergenic | 45.0% | |
| ! | GATGGACTTGGACTAGGATT+TGG | - | chr1_1:28748979-28748998 | Msa0017350:CDS | 45.0% |
| CAAATGGTTGGGAAAGCTCA+AGG | - | chr1_1:28749054-28749073 | Msa0017350:CDS | 45.0% | |
| TATGTGGCAAGTTCAGCAGA+TGG | - | chr1_1:28749081-28749100 | Msa0017350:intron | 45.0% | |
| ATGTGGCAAGTTCAGCAGAT+GGG | - | chr1_1:28749082-28749101 | Msa0017350:intron | 45.0% | |
| AGATGGGAGTAGACAGATGA+TGG | - | chr1_1:28749098-28749117 | Msa0017350:intron | 45.0% | |
| !! | TACAGCCTTGTTTGAAGGAG+GGG | - | chr1_1:28749125-28749144 | Msa0017350:CDS | 45.0% |
| ! | TTATCTGTAATAGGGGGCAC+AGG | - | chr1_1:28749207-28749226 | Msa0017350:CDS | 45.0% |
| !!! | ATTATATATTTTAATTTTCA+GGG | + | chr1_1:28746286-28746305 | None:intergenic | 5.0% |
| !! | TTAAAATAAAAAATAAAATC+TGG | - | chr1_1:28746639-28746658 | Msa0017350:intron | 5.0% |
| !!! | ATTTTTTTAAAAAAAAATTC+TGG | - | chr1_1:28746679-28746698 | Msa0017350:intron | 5.0% |
| !! | TAAAAATAAAAAATAAAATC+TGG | + | chr1_1:28746869-28746888 | None:intergenic | 5.0% |
| !!! | CAATTTTTTTAAAAAAAATT+CGG | - | chr1_1:28746929-28746948 | Msa0017350:intron | 5.0% |
| !!! | TAATTTTTAAAAAAAAATTC+TGG | + | chr1_1:28746962-28746981 | None:intergenic | 5.0% |
| !! | TAAAAATAAAAAATAAAATC+TGG | + | chr1_1:28746869-28746888 | None:intergenic | 5.0% |
| !!! | ACATATTTTAATTTTATTTT+GGG | - | chr1_1:28747524-28747543 | Msa0017350:intron | 5.0% |
| !! | AAATAAAAAAAATATAATGA+GGG | - | chr1_1:28747710-28747729 | Msa0017350:intron | 5.0% |
| TCCAATTGCAGCCACAGGAA+AGG | - | chr1_1:28744486-28744505 | Msa0017350:CDS | 50.0% | |
| TCCTTTCCTGTGGCTGCAAT+TGG | + | chr1_1:28744490-28744509 | None:intergenic | 50.0% | |
| ! | TCTTGGTGGCAGTAACCCAA+CGG | - | chr1_1:28744540-28744559 | Msa0017350:CDS | 50.0% |
| GAATCCAACTGGGGTTGCAA+AGG | + | chr1_1:28744614-28744633 | None:intergenic | 50.0% | |
| !! | ACGTTAGGACCTGATGGACT+TGG | - | chr1_1:28744784-28744803 | Msa0017350:CDS | 50.0% |
| !! | GGACCTGATGGACTTGGATT+AGG | - | chr1_1:28744790-28744809 | Msa0017350:CDS | 50.0% |
| ! | GGGGGTGTATGTAGCAAGTT+CGG | - | chr1_1:28744891-28744910 | Msa0017350:CDS | 50.0% |
| ATGTAGCAAGTTCGGCTGAC+GGG | - | chr1_1:28744899-28744918 | Msa0017350:CDS | 50.0% | |
| TGACGGGAGTAGACAGATGA+TGG | - | chr1_1:28744915-28744934 | Msa0017350:CDS | 50.0% | |
| ! | TCGCGATTATCGGTTGTAGG+AGG | - | chr1_1:28745018-28745037 | Msa0017350:CDS | 50.0% |
| ! | CGCGATTATCGGTTGTAGGA+GGG | - | chr1_1:28745019-28745038 | Msa0017350:CDS | 50.0% |
| ! | TTATCGGTTGTAGGAGGGAC+GGG | - | chr1_1:28745024-28745043 | Msa0017350:CDS | 50.0% |
| CTGAGACCTCTTATTCCACC+TGG | - | chr1_1:28745078-28745097 | Msa0017350:CDS | 50.0% | |
| ACCTCTTATTCCACCTGGAC+AGG | - | chr1_1:28745083-28745102 | Msa0017350:CDS | 50.0% | |
| ACCTGTCCAGGTGGAATAAG+AGG | + | chr1_1:28745087-28745106 | None:intergenic | 50.0% | |
| TGATGCATAGTAGAGTGGGG+TGG | - | chr1_1:28746105-28746124 | Msa0017350:intron | 50.0% | |
| GATGCATAGTAGAGTGGGGT+GGG | - | chr1_1:28746106-28746125 | Msa0017350:intron | 50.0% | |
| ATGCATAGTAGAGTGGGGTG+GGG | - | chr1_1:28746107-28746126 | Msa0017350:intron | 50.0% | |
| GGGGACCAAAATCGCACAAT+TGG | + | chr1_1:28747250-28747269 | None:intergenic | 50.0% | |
| GGGGACCAAAATCGCACAAT+TGG | - | chr1_1:28747250-28747269 | Msa0017350:intron | 50.0% | |
| TTGACCCTATTGCAGCCACA+GGG | - | chr1_1:28748671-28748690 | Msa0017350:CDS | 50.0% | |
| CTTTCCCTGTGGCTGCAATA+GGG | + | chr1_1:28748678-28748697 | None:intergenic | 50.0% | |
| TCTTTCCCTGTGGCTGCAAT+AGG | + | chr1_1:28748679-28748698 | None:intergenic | 50.0% | |
| !! | TCGACCGGTAACTGGTTTGT+TGG | - | chr1_1:28748753-28748772 | Msa0017350:CDS | 50.0% |
| !! | CGACCGGTAACTGGTTTGTT+GGG | - | chr1_1:28748754-28748773 | Msa0017350:CDS | 50.0% |
| GGATTCAACACTCCACAAGG+TGG | - | chr1_1:28748817-28748836 | Msa0017350:intron | 50.0% | |
| !! | GGTGCTATTCCCACTGTCAA+TGG | - | chr1_1:28748862-28748881 | Msa0017350:intron | 50.0% |
| ACCGGTATCCCATTAGGAAC+TGG | - | chr1_1:28748889-28748908 | Msa0017350:CDS | 50.0% | |
| GCCAGTTCCTAATGGGATAC+CGG | + | chr1_1:28748893-28748912 | None:intergenic | 50.0% | |
| !! | CAGTTAGGACCTGATGGACT+TGG | - | chr1_1:28748967-28748986 | Msa0017350:CDS | 50.0% |
| ATCTGTCCTGGTGGGATAAG+AGG | + | chr1_1:28749270-28749289 | None:intergenic | 50.0% | |
| GTACCCTTTGCAACCCCAGT+TGG | - | chr1_1:28744607-28744626 | Msa0017350:CDS | 55.0% | |
| ! | TATCGGTTGTAGGAGGGACG+GGG | - | chr1_1:28745025-28745044 | Msa0017350:CDS | 55.0% |
| TCAGTAGCAACCTGTCCAGG+TGG | + | chr1_1:28745096-28745115 | None:intergenic | 55.0% | |
| CCATCAGTAGCAACCTGTCC+AGG | + | chr1_1:28745099-28745118 | None:intergenic | 55.0% | |
| CCTGGACAGGTTGCTACTGA+TGG | - | chr1_1:28745096-28745115 | Msa0017350:CDS | 55.0% | |
| TGCATAGTAGAGTGGGGTGG+GGG | - | chr1_1:28746108-28746127 | Msa0017350:intron | 55.0% | |
| GTTGACCCTATTGCAGCCAC+AGG | - | chr1_1:28748670-28748689 | Msa0017350:CDS | 55.0% | |
| AAGTAACCCAACGGCTCGAC+CGG | - | chr1_1:28748738-28748757 | Msa0017350:CDS | 55.0% | |
| GGGATTGGAATCCCACCTTG+TGG | + | chr1_1:28748832-28748851 | None:intergenic | 55.0% | |
| CCGGTAACGCCATTGACAGT+GGG | + | chr1_1:28748874-28748893 | None:intergenic | 55.0% | |
| CCCACTGTCAATGGCGTTAC+CGG | - | chr1_1:28748871-28748890 | Msa0017350:CDS | 55.0% | |
| ACCGGTAACGCCATTGACAG+TGG | + | chr1_1:28748875-28748894 | None:intergenic | 55.0% | |
| GGCGTTACCGGTATCCCATT+AGG | - | chr1_1:28748883-28748902 | Msa0017350:CDS | 55.0% | |
| CGGCCAAGCCAGTTCCTAAT+GGG | + | chr1_1:28748900-28748919 | None:intergenic | 55.0% | |
| !! | CCATTAGGAACTGGCTTGGC+CGG | - | chr1_1:28748898-28748917 | Msa0017350:CDS | 55.0% |
| CAGGTGCAGTTAGGACCTGA+TGG | - | chr1_1:28748961-28748980 | Msa0017350:CDS | 55.0% | |
| !! | GGACCTGATGGACTTGGACT+AGG | - | chr1_1:28748973-28748992 | Msa0017350:CDS | 55.0% |
| CTGAGACCTCTTATCCCACC+AGG | - | chr1_1:28749261-28749280 | Msa0017350:CDS | 55.0% | |
| CAATGTCTCAGCACCATCGG+TGG | + | chr1_1:28749295-28749314 | None:intergenic | 55.0% | |
| !! | CGACCAGTGACCGGTTTGCT+CGG | - | chr1_1:28744565-28744584 | Msa0017350:CDS | 60.0% |
| TTGCCGAGCAAACCGGTCAC+TGG | + | chr1_1:28744571-28744590 | None:intergenic | 60.0% | |
| ATAGTAGAGTGGGGTGGGGG+TGG | - | chr1_1:28746111-28746130 | Msa0017350:intron | 60.0% | |
| AGTGGGGTGGGGGTGGAAAT+AGG | - | chr1_1:28746118-28746137 | Msa0017350:intron | 60.0% | |
| CAGTTACCGGTCGAGCCGTT+GGG | + | chr1_1:28748747-28748766 | None:intergenic | 60.0% | |
| CCGGCCAAGCCAGTTCCTAA+TGG | + | chr1_1:28748901-28748920 | None:intergenic | 60.0% | |
| CGGTGGCAATCTGTCCTGGT+GGG | + | chr1_1:28749278-28749297 | None:intergenic | 60.0% | |
| TCGGTGGCAATCTGTCCTGG+TGG | + | chr1_1:28749279-28749298 | None:intergenic | 60.0% | |
| CCATCGGTGGCAATCTGTCC+TGG | + | chr1_1:28749282-28749301 | None:intergenic | 60.0% | |
| CCAGGACAGATTGCCACCGA+TGG | - | chr1_1:28749279-28749298 | Msa0017350:CDS | 60.0% | |
| CGGTCACTGGTCGAGCCGTT+GGG | + | chr1_1:28744558-28744577 | None:intergenic | 65.0% | |
| CCAACGGCTCGACCAGTGAC+CGG | - | chr1_1:28744556-28744575 | Msa0017350:CDS | 65.0% | |
| CCAGTTACCGGTCGAGCCGT+TGG | + | chr1_1:28748748-28748767 | None:intergenic | 65.0% | |
| CCAACGGCTCGACCGGTAAC+TGG | - | chr1_1:28748745-28748764 | Msa0017350:CDS | 65.0% | |
| CCGGTCACTGGTCGAGCCGT+TGG | + | chr1_1:28744559-28744578 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28744460 | 28749344 | 28744460 | ID=Msa0017350;Name=Msa0017350 |
| chr1_1 | mRNA | 28744460 | 28749344 | 28744460 | ID=Msa0017350-mRNA-1;Parent=Msa0017350;Name=Msa0017350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0.25|4|0|452 |
| chr1_1 | exon | 28749101 | 28749344 | 28749101 | ID=Msa0017350-mRNA-1:exon:9599;Parent=Msa0017350-mRNA-1 |
| chr1_1 | exon | 28748868 | 28749088 | 28748868 | ID=Msa0017350-mRNA-1:exon:9598;Parent=Msa0017350-mRNA-1 |
| chr1_1 | exon | 28748661 | 28748801 | 28748661 | ID=Msa0017350-mRNA-1:exon:9597;Parent=Msa0017350-mRNA-1 |
| chr1_1 | exon | 28744460 | 28745212 | 28744460 | ID=Msa0017350-mRNA-1:exon:9596;Parent=Msa0017350-mRNA-1 |
| chr1_1 | CDS | 28749101 | 28749344 | 28749101 | ID=Msa0017350-mRNA-1:cds;Parent=Msa0017350-mRNA-1 |
| chr1_1 | CDS | 28748868 | 28749088 | 28748868 | ID=Msa0017350-mRNA-1:cds;Parent=Msa0017350-mRNA-1 |
| chr1_1 | CDS | 28748661 | 28748801 | 28748661 | ID=Msa0017350-mRNA-1:cds;Parent=Msa0017350-mRNA-1 |
| chr1_1 | CDS | 28744460 | 28745212 | 28744460 | ID=Msa0017350-mRNA-1:cds;Parent=Msa0017350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
