AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069200 MtrunA17_Chr1g0199951 87.037 216 4 2 1 216 1 192 6.93e-135 376
Msa0069200 MtrunA17_Chr4g0038891 57.219 187 55 3 27 213 18 179 2.04e-67 205
Msa0069200 MtrunA17_Chr5g0396451 62.733 161 58 2 15 175 6 164 7.65e-67 203
Msa0069200 MtrunA17_Chr1g0154011 44.030 134 72 3 43 175 3 134 2.69e-31 112
Msa0069200 MtrunA17_Chr4g0037011 46.032 126 66 2 43 168 3 126 7.09e-31 110
Msa0069200 MtrunA17_Chr2g0316201 42.963 135 75 2 40 174 4 136 1.47e-30 110
Msa0069200 MtrunA17_Chr4g0060351 42.222 135 76 2 39 173 2 134 3.62e-30 109
Msa0069200 MtrunA17_Chr5g0432831 44.531 128 69 2 43 170 3 128 3.80e-30 108
Msa0069200 MtrunA17_Chr3g0108261 44.531 128 69 2 43 170 3 128 3.84e-30 108
Msa0069200 MtrunA17_Chr8g0362321 41.481 135 77 2 39 173 2 134 8.37e-30 108
Msa0069200 MtrunA17_Chr7g0275361 43.750 128 70 2 43 170 3 128 1.00e-29 107
Msa0069200 MtrunA17_Chr2g0316211 43.846 130 71 2 45 174 9 136 1.04e-29 108
Msa0069200 MtrunA17_Chr8g0369311 41.007 139 79 3 38 175 54 190 3.13e-28 105
Msa0069200 MtrunA17_Chr3g0131871 36.842 152 92 4 45 193 6 156 3.68e-27 102
Msa0069200 MtrunA17_Chr8g0378601 44.915 118 61 2 37 151 15 131 8.84e-26 98.2
Msa0069200 MtrunA17_Chr3g0139901 41.509 106 60 2 58 162 21 125 1.02e-22 90.1
Msa0069200 MtrunA17_Chr4g0031181 36.434 129 68 2 67 182 30 157 3.03e-20 84.0
Msa0069200 MtrunA17_Chr2g0328001 38.655 119 59 2 67 172 30 147 1.44e-19 82.0
Msa0069200 MtrunA17_Chr4g0059291 35.385 130 79 3 40 168 2 127 6.15e-18 78.2
Msa0069200 MtrunA17_Chr8g0348701 35.385 130 79 3 40 168 2 127 9.23e-18 77.8
Msa0069200 MtrunA17_Chr8g0387131 33.077 130 82 3 40 168 2 127 1.20e-16 74.7
Msa0069200 MtrunA17_Chr5g0401831 41.837 98 53 3 66 160 32 128 2.05e-16 73.6
Msa0069200 MtrunA17_Chr7g0254701 31.544 149 95 4 41 188 10 152 2.84e-16 75.5
Msa0069200 MtrunA17_Chr4g0053191 39.604 101 58 2 70 168 37 136 2.95e-16 73.2
Msa0069200 MtrunA17_Chr8g0372391 36.806 144 74 5 43 182 17 147 1.27e-15 71.6
Msa0069200 MtrunA17_Chr5g0403591 30.435 138 92 3 35 171 22 156 1.38e-15 72.0
Msa0069200 MtrunA17_Chr5g0404931 39.175 97 50 3 45 137 19 110 1.27e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069200 AT3G20060.1 66.906 139 44 2 37 175 32 168 1.21e-62 193
Msa0069200 AT3G20060.2 68.000 125 38 2 51 175 1 123 4.10e-57 177
Msa0069200 AT1G50490.1 65.101 149 50 2 27 175 21 167 5.34e-57 179
Msa0069200 AT2G16740.1 44.776 134 71 3 43 175 3 134 1.34e-31 113
Msa0069200 AT1G16890.2 44.444 135 73 2 40 174 4 136 5.97e-31 111
Msa0069200 AT1G16890.3 41.958 143 74 2 40 174 4 145 6.67e-31 111
Msa0069200 AT1G78870.2 42.963 135 75 2 40 174 4 136 2.50e-30 110
Msa0069200 AT1G14400.1 42.222 135 76 2 39 173 2 134 2.73e-30 109
Msa0069200 AT1G14400.2 42.222 135 76 2 39 173 2 134 2.73e-30 109
Msa0069200 AT2G02760.1 42.222 135 76 2 39 173 2 134 4.39e-30 109
Msa0069200 AT2G02760.2 42.222 135 76 2 39 173 2 134 4.39e-30 109
Msa0069200 AT2G02760.4 42.222 135 76 2 39 173 2 134 4.39e-30 109
Msa0069200 AT2G02760.3 42.222 135 76 2 39 173 2 134 4.39e-30 109
Msa0069200 AT5G41700.4 42.969 128 72 1 43 170 3 129 4.40e-30 109
Msa0069200 AT1G64230.2 44.531 128 69 2 43 170 3 128 5.66e-30 108
Msa0069200 AT1G64230.1 44.531 128 69 2 43 170 3 128 5.66e-30 108
Msa0069200 AT4G27960.1 43.284 134 73 3 43 175 3 134 7.98e-30 108
Msa0069200 AT5G56150.1 42.520 127 71 2 43 169 3 127 8.42e-30 108
Msa0069200 AT5G53300.2 43.284 134 73 3 43 175 3 134 1.34e-29 107
Msa0069200 AT5G53300.4 43.284 134 73 3 43 175 3 134 1.34e-29 107
Msa0069200 AT5G53300.1 43.284 134 73 3 43 175 3 134 1.34e-29 107
Msa0069200 AT5G41700.5 43.750 128 70 2 43 170 3 128 1.55e-29 107
Msa0069200 AT5G41700.2 43.750 128 70 2 43 170 3 128 1.55e-29 107
Msa0069200 AT5G41700.1 43.750 128 70 2 43 170 3 128 1.55e-29 107
Msa0069200 AT3G08690.2 43.750 128 70 2 43 170 3 128 2.08e-29 107
Msa0069200 AT3G08690.1 43.750 128 70 2 43 170 3 128 2.08e-29 107
Msa0069200 AT5G62540.1 42.963 135 75 2 39 173 2 134 2.22e-29 107
Msa0069200 AT4G27960.2 43.284 134 73 3 43 175 33 164 1.13e-28 106
Msa0069200 AT1G64230.3 42.029 138 67 3 43 170 3 137 1.90e-28 105
Msa0069200 AT5G50870.1 42.742 124 69 2 45 167 6 128 7.44e-28 104
Msa0069200 AT5G50870.2 42.742 124 69 2 45 167 6 128 7.73e-28 105
Msa0069200 AT1G64230.5 46.667 105 55 1 66 170 67 170 1.33e-27 103
Msa0069200 AT1G64230.4 46.667 105 55 1 66 170 67 170 1.33e-27 103
Msa0069200 AT1G16890.1 50.515 97 47 1 78 174 8 103 2.71e-27 101
Msa0069200 AT1G78870.4 50.515 97 47 1 78 174 8 103 2.95e-27 100
Msa0069200 AT3G08700.2 42.963 135 73 4 43 175 3 135 1.73e-26 100
Msa0069200 AT3G08700.1 42.963 135 73 4 43 175 3 135 1.73e-26 100
Msa0069200 AT1G78870.1 50.000 98 47 2 78 174 8 104 6.84e-26 97.4
Msa0069200 AT3G13550.1 40.580 138 76 4 40 173 32 167 1.13e-24 96.3
Msa0069200 AT5G41700.3 43.396 106 59 1 43 148 3 107 1.20e-24 95.1
Msa0069200 AT3G13550.2 43.333 120 63 3 40 155 32 150 1.83e-24 95.5
Msa0069200 AT5G25760.1 41.803 122 67 3 58 176 21 141 2.03e-24 94.7
Msa0069200 AT5G25760.2 41.803 122 67 3 58 176 21 141 2.03e-24 94.7
Msa0069200 AT1G36340.2 41.322 121 68 2 41 161 8 125 2.20e-24 94.7
Msa0069200 AT1G36340.1 41.322 121 68 2 41 161 8 125 2.20e-24 94.7
Msa0069200 AT5G56150.2 44.211 95 52 1 43 137 3 96 2.43e-24 93.2
Msa0069200 AT5G53300.3 46.316 95 50 1 43 137 3 96 4.62e-24 92.4
Msa0069200 AT1G78870.3 42.727 110 62 1 40 149 4 112 1.50e-23 91.3
Msa0069200 AT5G59300.1 38.655 119 59 2 67 172 30 147 8.74e-20 82.8
Msa0069200 AT1G63800.1 37.692 130 76 3 40 168 2 127 4.88e-19 81.6
Msa0069200 AT3G55380.1 35.537 121 64 2 67 174 31 150 8.97e-19 80.5
Msa0069200 AT3G46460.1 37.815 119 60 2 67 172 30 147 1.38e-18 79.7
Msa0069200 AT5G41340.1 36.154 130 78 3 40 168 2 127 2.92e-18 79.3
Msa0069200 AT2G32790.1 42.241 116 61 3 63 175 51 163 1.54e-16 74.7
Msa0069200 AT2G46030.5 33.571 140 87 4 40 177 2 137 2.69e-16 74.3
Msa0069200 AT2G46030.1 33.571 140 87 4 40 177 2 137 2.69e-16 74.3
Msa0069200 AT5G05080.2 34.375 128 82 2 41 168 10 135 6.80e-16 74.3
Msa0069200 AT5G05080.3 34.375 128 82 2 41 168 10 135 6.80e-16 74.3
Msa0069200 AT5G05080.1 34.375 128 82 2 41 168 10 135 6.80e-16 74.3
Msa0069200 AT5G05080.4 34.375 128 82 2 41 168 10 135 6.80e-16 74.3
Msa0069200 AT2G46030.3 32.895 152 88 5 28 177 70 209 9.54e-16 73.9
Msa0069200 AT3G57870.1 40.860 93 52 2 70 160 38 129 2.11e-15 71.2
Msa0069200 AT3G24515.1 37.313 134 67 6 37 156 2 132 3.10e-15 73.9
Msa0069200 AT1G63800.2 37.069 116 68 3 54 168 1 112 3.20e-15 70.9
Msa0069200 AT2G18600.1 34.862 109 68 3 64 171 52 158 3.22e-15 71.2
Msa0069200 AT2G18600.2 34.862 109 68 3 64 171 52 158 3.22e-15 71.2
Msa0069200 AT4G36800.2 31.250 128 83 4 45 171 34 157 4.35e-15 70.9
Msa0069200 AT4G36800.1 31.250 128 83 4 45 171 34 157 4.35e-15 70.9
Msa0069200 AT4G36410.1 38.835 103 54 3 39 137 13 110 1.95e-14 68.6
Msa0069200 AT5G41340.2 38.095 84 51 1 86 168 9 92 1.11e-13 66.6
Msa0069200 AT1G75440.1 39.394 99 51 3 43 137 17 110 1.32e-13 66.6
Msa0069200 AT5G42990.1 35.772 123 70 3 45 163 19 136 2.45e-13 65.9
Msa0069200 AT3G24515.3 38.462 91 51 2 70 156 68 157 2.49e-13 68.6
Msa0069200 AT1G45050.1 35.772 123 70 3 45 163 19 136 3.77e-13 65.1
Msa0069200 AT3G55380.2 29.032 155 62 4 67 174 31 184 4.94e-13 65.9
Msa0069200 AT3G46460.3 35.354 99 50 2 87 172 8 105 1.00e-12 63.2
Msa0069200 AT3G46460.2 35.354 99 50 2 87 172 8 105 1.00e-12 63.2
Msa0069200 AT2G46030.4 34.483 116 71 3 54 168 19 130 1.13e-12 64.3
Msa0069200 AT2G46030.2 34.483 116 71 3 54 168 19 130 1.13e-12 64.3

Find 87 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTTGGGGTGGTTTAAA+AGG 0.191154 1_2:-37456714 None:intergenic
AATTGTATAAATCAACTTTC+AGG 0.222701 1_2:-37457578 None:intergenic
AATGAAGTTGTTACCGAAAA+AGG 0.222980 1_2:-37455564 None:intergenic
CATCCAAATGTTGACCAGTT+TGG 0.280045 1_2:+37456756 Msa0069200:CDS
TAAACATAGAATAATAAATA+TGG 0.284957 1_2:-37455631 None:intergenic
TCCCCAATGGAAGTCCTTAT+AGG 0.294653 1_2:-37455458 None:intergenic
CAGACTACAGAAGGAATTAA+TGG 0.312893 1_2:+37456195 Msa0069200:intron
AACTTTGACTAAAACAACTT+TGG 0.325537 1_2:+37455378 Msa0069200:five_prime_UTR
ACTTTGACTAAAACAACTTT+GGG 0.339793 1_2:+37455379 Msa0069200:five_prime_UTR
AACAACAATCTCAACCTATA+AGG 0.341938 1_2:+37455444 Msa0069200:five_prime_UTR
AGGAGAAGCGAGTGGCTTCT+TGG 0.342515 1_2:-37455877 None:intergenic
TTTAGAGGGCTCTCCAAGTT+AGG 0.344635 1_2:-37457210 None:intergenic
AACTTTGGGTGCGGAATACT+TGG 0.348262 1_2:+37455393 Msa0069200:five_prime_UTR
TCTGCAGCATAGTTGTTTAG+AGG 0.381020 1_2:-37457225 None:intergenic
TTGCCAAACTGGTCAACATT+TGG 0.388830 1_2:-37456759 None:intergenic
CTAGACAAATGTTGCCAAAC+TGG 0.389058 1_2:-37456770 None:intergenic
AGAAAATTCCCCTGTTGAAT+CGG 0.394486 1_2:+37455827 Msa0069200:CDS
GGTGGTTTAAAAGGATAGTT+CGG 0.395297 1_2:-37456705 None:intergenic
CGACTGACCGCCGATTCAAC+AGG 0.398059 1_2:-37455837 None:intergenic
ACAACTATGCTGCAGAGCTT+TGG 0.406851 1_2:+37457232 Msa0069200:CDS
TTGTATCCTTAACCAGTGTC+CGG 0.408928 1_2:+37455590 Msa0069200:five_prime_UTR
ACATGGATTGGCACAATTCA+AGG 0.410583 1_2:+37456627 Msa0069200:CDS
GTGGTTTAAAAGGATAGTTC+GGG 0.414728 1_2:-37456704 None:intergenic
TCTGTCTATACAAAGTCTAT+TGG 0.417973 1_2:+37457106 Msa0069200:CDS
AACCTATAAGGACTTCCATT+GGG 0.430137 1_2:+37455456 Msa0069200:five_prime_UTR
CTTCGGCGGTGGTGTTTGAT+CGG 0.437236 1_2:-37455806 None:intergenic
TCTGAGCCGTTGATCTAATT+AGG 0.440454 1_2:+37455757 Msa0069200:five_prime_UTR
TATCTATGAGTCATGTTAAC+CGG 0.441261 1_2:+37455495 Msa0069200:five_prime_UTR
GATGCCCCGGACACTGGTTA+AGG 0.442611 1_2:-37455596 None:intergenic
CAGATGAGTGGAGGAGATCT+TGG 0.446524 1_2:+37456570 Msa0069200:intron
CATTTGTCTAGACATCCTTC+AGG 0.450655 1_2:+37456782 Msa0069200:CDS
TGTCTCCGGAGCACTGGTTA+AGG 0.457547 1_2:+37455518 Msa0069200:five_prime_UTR
GGCACAATTCAAGGTGGAAA+AGG 0.458217 1_2:+37456636 Msa0069200:CDS
TCTAACAGCAGAGCCTAACT+TGG 0.460379 1_2:+37457197 Msa0069200:intron
TGGAAAAGGAACTCCTTATG+AGG 0.468163 1_2:+37456650 Msa0069200:CDS
GGAGTATCTGCTTTCCCTGA+TGG 0.470606 1_2:+37456591 Msa0069200:CDS
GCCTCCGTTGATCGGAATCA+TGG 0.476412 1_2:+37455779 Msa0069200:exon
GTCCACAAGCAGTATTTAGC+TGG 0.486859 1_2:+37457542 Msa0069200:CDS
ATAAATCAACTTTCAGGTGC+AGG 0.493849 1_2:-37457572 None:intergenic
GTCATGTTAACCGGTGTCTC+CGG 0.493906 1_2:+37455504 Msa0069200:five_prime_UTR
TGTATCCTTAACCAGTGTCC+GGG 0.495146 1_2:+37455591 Msa0069200:five_prime_UTR
TTATAAGATAAACCCTCATA+AGG 0.500118 1_2:-37456663 None:intergenic
CAACCTATAAGGACTTCCAT+TGG 0.505422 1_2:+37455455 Msa0069200:five_prime_UTR
AACCGGTGTCTCCGGAGCAC+TGG 0.509797 1_2:+37455512 Msa0069200:five_prime_UTR
TCATGCAGATTTCAAGAGAA+TGG 0.510290 1_2:+37457520 Msa0069200:CDS
GACTAAAACAACTTTGGGTG+CGG 0.513761 1_2:+37455384 Msa0069200:five_prime_UTR
CTAATTAGGCCTCCGTTGAT+CGG 0.517352 1_2:+37455771 Msa0069200:five_prime_UTR
GTCTCAAATTTCACTTGGGG+TGG 0.517777 1_2:-37456723 None:intergenic
TGCAGAGCTTTGGAATGATA+AGG 0.522423 1_2:+37457242 Msa0069200:CDS
GAAGGAATTAATGGCTCTCA+TGG 0.522770 1_2:+37456204 Msa0069200:CDS
TGTATCCTTAACCAGTGCTC+CGG 0.526902 1_2:-37455523 None:intergenic
GAAACGGAAGTTGTGTCAGC+AGG 0.527352 1_2:-37455903 None:intergenic
GAAGTTGTGTCAGCAGGAAG+AGG 0.534120 1_2:-37455897 None:intergenic
CGTCGTCTCAAATTTCACTT+GGG 0.535928 1_2:-37456727 None:intergenic
AGAATTTCGCTGAAAGTGGT+AGG 0.537605 1_2:-37455668 None:intergenic
TTAATCGATGCCCCGGACAC+TGG 0.538660 1_2:-37455602 None:intergenic
GGAGATGAACCTTTGAGAAA+CGG 0.539253 1_2:-37455919 None:intergenic
ACGTCGTCTCAAATTTCACT+TGG 0.545034 1_2:-37456728 None:intergenic
GTGCAATTGCAGACTACAGA+AGG 0.545344 1_2:+37456186 Msa0069200:intron
TCAGTTATTTCTTTCCCCAA+TGG 0.550867 1_2:-37455471 None:intergenic
CTGCAGCATAGTTGTTTAGA+GGG 0.556199 1_2:-37457224 None:intergenic
ACACAACTTCCGTTTCTCAA+AGG 0.558610 1_2:+37455910 Msa0069200:CDS
GAAAATGTTAATCGATGCCC+CGG 0.563177 1_2:-37455609 None:intergenic
TGGTTTAAAAGGATAGTTCG+GGG 0.571786 1_2:-37456703 None:intergenic
CTCCAGCTAAATACTGCTTG+TGG 0.577463 1_2:-37457544 None:intergenic
ACCTCCATGATTCCGATCAA+CGG 0.578245 1_2:-37455783 None:intergenic
AACCAGTGCTCCGGAGACAC+CGG 0.590723 1_2:-37455514 None:intergenic
TTGTGATTGTATAGGACAAG+TGG 0.591402 1_2:+37457054 Msa0069200:intron
GGAAAAGGAACTCCTTATGA+GGG 0.594287 1_2:+37456651 Msa0069200:CDS
GGTTTAAAAGGATAGTTCGG+GGG 0.602685 1_2:-37456702 None:intergenic
AGAAGCGAGTGGCTTCTTGG+AGG 0.606644 1_2:-37455874 None:intergenic
TCTATACAAAGTCTATTGGA+AGG 0.607196 1_2:+37457110 Msa0069200:CDS
ACCTATAAGGACTTCCATTG+GGG 0.609299 1_2:+37455457 Msa0069200:five_prime_UTR
GACTGACCGCCGATTCAACA+GGG 0.609320 1_2:-37455836 None:intergenic
CGGAGGCCTAATTAGATCAA+CGG 0.610937 1_2:-37455763 None:intergenic
AAATTCCCCTGTTGAATCGG+CGG 0.628092 1_2:+37455830 Msa0069200:CDS
GTATCCTTAACCAGTGTCCG+GGG 0.637173 1_2:+37455592 Msa0069200:five_prime_UTR
GAGCTTTGGAATGATAAGGA+AGG 0.647349 1_2:+37457246 Msa0069200:CDS
GCTTCTTGGAGGATGATCGA+CGG 0.652262 1_2:-37455863 None:intergenic
GCAGGAAGAGGAGAAGCGAG+TGG 0.668776 1_2:-37455885 None:intergenic
GTTTAAAAGGATAGTTCGGG+GGG 0.670883 1_2:-37456701 None:intergenic
GTCGTCTCAAATTTCACTTG+GGG 0.674521 1_2:-37456726 None:intergenic
TCCATGATTCCGATCAACGG+AGG 0.675004 1_2:-37455780 None:intergenic
TCCGTTGATCGGAATCATGG+AGG 0.688201 1_2:+37455782 Msa0069200:exon
TCTTGGAGGATGATCGACGG+TGG 0.707980 1_2:-37455860 None:intergenic
ACTGACCGCCGATTCAACAG+GGG 0.708293 1_2:-37455835 None:intergenic
TGGATTGGCACAATTCAAGG+TGG 0.712983 1_2:+37456630 Msa0069200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACATAGAATAATAAATA+TGG - chr1_2:37455634-37455653 None:intergenic 10.0%
!! TGAAATTTAGAAATATTTAA+GGG - chr1_2:37455949-37455968 None:intergenic 10.0%
!! ATGAAATTTAGAAATATTTA+AGG - chr1_2:37455950-37455969 None:intergenic 10.0%
!! TAAACATAGAATAATAAATA+TGG - chr1_2:37455634-37455653 None:intergenic 10.0%
!! TGAAATTTAGAAATATTTAA+GGG - chr1_2:37455949-37455968 None:intergenic 10.0%
!! ATGAAATTTAGAAATATTTA+AGG - chr1_2:37455950-37455969 None:intergenic 10.0%
!! AAATTTAGAAATATTTAAGG+GGG - chr1_2:37455947-37455966 None:intergenic 15.0%
!! GAAATTTAGAAATATTTAAG+GGG - chr1_2:37455948-37455967 None:intergenic 15.0%
!! AAAAAAACTAAATTAGAAGA+TGG - chr1_2:37455976-37455995 None:intergenic 15.0%
!!! TTAAATTTTAAACTTTGATG+TGG + chr1_2:37456118-37456137 Msa0069200:intron 15.0%
!!! CAGTCAATTTTTTTATTTTT+AGG + chr1_2:37456252-37456271 Msa0069200:intron 15.0%
!! TCATTAAGAAACTAAATTTA+TGG + chr1_2:37456468-37456487 Msa0069200:intron 15.0%
!! GCATTCATATTAAATATAAT+TGG - chr1_2:37456991-37457010 None:intergenic 15.0%
!! AAATTTAGAAATATTTAAGG+GGG - chr1_2:37455947-37455966 None:intergenic 15.0%
!! GAAATTTAGAAATATTTAAG+GGG - chr1_2:37455948-37455967 None:intergenic 15.0%
!! AAAAAAACTAAATTAGAAGA+TGG - chr1_2:37455976-37455995 None:intergenic 15.0%
!!! TTAAATTTTAAACTTTGATG+TGG + chr1_2:37456118-37456137 Msa0069200:intron 15.0%
!!! CAGTCAATTTTTTTATTTTT+AGG + chr1_2:37456252-37456271 Msa0069200:intron 15.0%
!! TCATTAAGAAACTAAATTTA+TGG + chr1_2:37456468-37456487 Msa0069200:intron 15.0%
!! GCATTCATATTAAATATAAT+TGG - chr1_2:37456991-37457010 None:intergenic 15.0%
!! AATTTAGAAATATTTAAGGG+GGG - chr1_2:37455946-37455965 None:intergenic 20.0%
!! TTAAAAAAATCACATAATCC+AGG + chr1_2:37456902-37456921 Msa0069200:intron 20.0%
!! TAAAAAAATCACATAATCCA+GGG + chr1_2:37456903-37456922 Msa0069200:intron 20.0%
!! TCATCTACATATTTAATACT+AGG - chr1_2:37457013-37457032 None:intergenic 20.0%
!! AGATCAATTGAACTAAAATT+TGG - chr1_2:37457363-37457382 None:intergenic 20.0%
!! AATTTAGAAATATTTAAGGG+GGG - chr1_2:37455946-37455965 None:intergenic 20.0%
!! TTAAAAAAATCACATAATCC+AGG + chr1_2:37456902-37456921 Msa0069200:intron 20.0%
!! TAAAAAAATCACATAATCCA+GGG + chr1_2:37456903-37456922 Msa0069200:intron 20.0%
!! TCATCTACATATTTAATACT+AGG - chr1_2:37457013-37457032 None:intergenic 20.0%
!! AGATCAATTGAACTAAAATT+TGG - chr1_2:37457363-37457382 None:intergenic 20.0%
! AACTTTGACTAAAACAACTT+TGG + chr1_2:37455378-37455397 Msa0069200:five_prime_UTR 25.0%
! ACTTTGACTAAAACAACTTT+GGG + chr1_2:37455379-37455398 Msa0069200:five_prime_UTR 25.0%
!!! TTTTTAGTCTTGATCAGTTT+TGG + chr1_2:37455992-37456011 Msa0069200:intron 25.0%
! ATCAAATTTCATTTCATGCA+TGG - chr1_2:37456068-37456087 None:intergenic 25.0%
! ACACCATAAATTTGACAATA+AGG - chr1_2:37456278-37456297 None:intergenic 25.0%
! ATTGTCAAATTTATGGTGTT+TGG + chr1_2:37456279-37456298 Msa0069200:intron 25.0%
! GTACTTTACTTCTTCATATT+AGG + chr1_2:37456402-37456421 Msa0069200:intron 25.0%
! TTTACTTCTTCATATTAGGT+TGG + chr1_2:37456406-37456425 Msa0069200:intron 25.0%
! TTACTTCTTCATATTAGGTT+GGG + chr1_2:37456407-37456426 Msa0069200:intron 25.0%
! AATCATGTGAAATATGTTGT+TGG + chr1_2:37456431-37456450 Msa0069200:intron 25.0%
! ATCATGTGAAATATGTTGTT+GGG + chr1_2:37456432-37456451 Msa0069200:intron 25.0%
! AGTTTCTTAATGATACAAGA+AGG - chr1_2:37456461-37456480 None:intergenic 25.0%
! TAAAAATATTCTCACCATCA+GGG - chr1_2:37456608-37456627 None:intergenic 25.0%
!!! ATGGTGAGAATATTTTTACA+TGG + chr1_2:37456610-37456629 Msa0069200:CDS 25.0%
!!! GAGAATATTTTTACATGGAT+TGG + chr1_2:37456615-37456634 Msa0069200:CDS 25.0%
! TTATAAGATAAACCCTCATA+AGG - chr1_2:37456666-37456685 None:intergenic 25.0%
!!! GGTTTTAATCTTTGTAGATT+TGG + chr1_2:37457458-37457477 Msa0069200:intron 25.0%
! AACTTTGACTAAAACAACTT+TGG + chr1_2:37455378-37455397 Msa0069200:five_prime_UTR 25.0%
! ACTTTGACTAAAACAACTTT+GGG + chr1_2:37455379-37455398 Msa0069200:five_prime_UTR 25.0%
!!! TTTTTAGTCTTGATCAGTTT+TGG + chr1_2:37455992-37456011 Msa0069200:intron 25.0%
! ATCAAATTTCATTTCATGCA+TGG - chr1_2:37456068-37456087 None:intergenic 25.0%
! ACACCATAAATTTGACAATA+AGG - chr1_2:37456278-37456297 None:intergenic 25.0%
! ATTGTCAAATTTATGGTGTT+TGG + chr1_2:37456279-37456298 Msa0069200:intron 25.0%
! GTACTTTACTTCTTCATATT+AGG + chr1_2:37456402-37456421 Msa0069200:intron 25.0%
! TTTACTTCTTCATATTAGGT+TGG + chr1_2:37456406-37456425 Msa0069200:intron 25.0%
! TTACTTCTTCATATTAGGTT+GGG + chr1_2:37456407-37456426 Msa0069200:intron 25.0%
! AATCATGTGAAATATGTTGT+TGG + chr1_2:37456431-37456450 Msa0069200:intron 25.0%
! ATCATGTGAAATATGTTGTT+GGG + chr1_2:37456432-37456451 Msa0069200:intron 25.0%
! AGTTTCTTAATGATACAAGA+AGG - chr1_2:37456461-37456480 None:intergenic 25.0%
! TAAAAATATTCTCACCATCA+GGG - chr1_2:37456608-37456627 None:intergenic 25.0%
!!! ATGGTGAGAATATTTTTACA+TGG + chr1_2:37456610-37456629 Msa0069200:CDS 25.0%
!!! GAGAATATTTTTACATGGAT+TGG + chr1_2:37456615-37456634 Msa0069200:CDS 25.0%
! TTATAAGATAAACCCTCATA+AGG - chr1_2:37456666-37456685 None:intergenic 25.0%
!!! GGTTTTAATCTTTGTAGATT+TGG + chr1_2:37457458-37457477 Msa0069200:intron 25.0%
AACAACAATCTCAACCTATA+AGG + chr1_2:37455444-37455463 Msa0069200:five_prime_UTR 30.0%
TATCTATGAGTCATGTTAAC+CGG + chr1_2:37455495-37455514 Msa0069200:five_prime_UTR 30.0%
!!! CGAAGTTGTTTTTCCTTTTT+CGG + chr1_2:37455551-37455570 Msa0069200:five_prime_UTR 30.0%
AATGAAGTTGTTACCGAAAA+AGG - chr1_2:37455567-37455586 None:intergenic 30.0%
!!! TTTTAGAATTTCGCTGAAAG+TGG - chr1_2:37455675-37455694 None:intergenic 30.0%
!! AGGCCTTATTGTCAAATTTA+TGG + chr1_2:37456272-37456291 Msa0069200:intron 30.0%
GTAAAAATATTCTCACCATC+AGG - chr1_2:37456609-37456628 None:intergenic 30.0%
TCTAATTCATGAATACCTGA+AGG - chr1_2:37456800-37456819 None:intergenic 30.0%
TTAAACTATTATCCGTGTGT+CGG - chr1_2:37456886-37456905 None:intergenic 30.0%
TTCCTACTTTGTGATTGTAT+AGG + chr1_2:37457046-37457065 Msa0069200:intron 30.0%
TCTGTCTATACAAAGTCTAT+TGG + chr1_2:37457106-37457125 Msa0069200:CDS 30.0%
TCTATACAAAGTCTATTGGA+AGG + chr1_2:37457110-37457129 Msa0069200:CDS 30.0%
TAGAAAATAACTGATCAGAC+AGG - chr1_2:37457181-37457200 None:intergenic 30.0%
GAGCAATAACAACAAATAGT+TGG - chr1_2:37457333-37457352 None:intergenic 30.0%
AACAACAATCTCAACCTATA+AGG + chr1_2:37455444-37455463 Msa0069200:five_prime_UTR 30.0%
TATCTATGAGTCATGTTAAC+CGG + chr1_2:37455495-37455514 Msa0069200:five_prime_UTR 30.0%
!!! CGAAGTTGTTTTTCCTTTTT+CGG + chr1_2:37455551-37455570 Msa0069200:five_prime_UTR 30.0%
AATGAAGTTGTTACCGAAAA+AGG - chr1_2:37455567-37455586 None:intergenic 30.0%
!!! TTTTAGAATTTCGCTGAAAG+TGG - chr1_2:37455675-37455694 None:intergenic 30.0%
!! AGGCCTTATTGTCAAATTTA+TGG + chr1_2:37456272-37456291 Msa0069200:intron 30.0%
GTAAAAATATTCTCACCATC+AGG - chr1_2:37456609-37456628 None:intergenic 30.0%
TCTAATTCATGAATACCTGA+AGG - chr1_2:37456800-37456819 None:intergenic 30.0%
TTAAACTATTATCCGTGTGT+CGG - chr1_2:37456886-37456905 None:intergenic 30.0%
TTCCTACTTTGTGATTGTAT+AGG + chr1_2:37457046-37457065 Msa0069200:intron 30.0%
TCTGTCTATACAAAGTCTAT+TGG + chr1_2:37457106-37457125 Msa0069200:CDS 30.0%
TCTATACAAAGTCTATTGGA+AGG + chr1_2:37457110-37457129 Msa0069200:CDS 30.0%
TAGAAAATAACTGATCAGAC+AGG - chr1_2:37457181-37457200 None:intergenic 30.0%
GAGCAATAACAACAAATAGT+TGG - chr1_2:37457333-37457352 None:intergenic 30.0%
AACCTATAAGGACTTCCATT+GGG + chr1_2:37455456-37455475 Msa0069200:five_prime_UTR 35.0%
!! TCAGTTATTTCTTTCCCCAA+TGG - chr1_2:37455474-37455493 None:intergenic 35.0%
! TTCAACAGGGGAATTTTCTT+CGG - chr1_2:37455826-37455845 None:intergenic 35.0%
AGAAAATTCCCCTGTTGAAT+CGG + chr1_2:37455827-37455846 Msa0069200:CDS 35.0%
TTAGAAATATTTAAGGGGGG+AGG - chr1_2:37455943-37455962 None:intergenic 35.0%
CAGACTACAGAAGGAATTAA+TGG + chr1_2:37456195-37456214 Msa0069200:intron 35.0%
! AGTAAAGTACTAAGTATGCG+TGG - chr1_2:37456392-37456411 None:intergenic 35.0%
TTCATTCGTTCTCACAAAGA+CGG + chr1_2:37456512-37456531 Msa0069200:intron 35.0%
!!! TTACTTTTTGTGCAGATGAG+TGG + chr1_2:37456558-37456577 Msa0069200:intron 35.0%
TGGTTTAAAAGGATAGTTCG+GGG - chr1_2:37456706-37456725 None:intergenic 35.0%
GTGGTTTAAAAGGATAGTTC+GGG - chr1_2:37456707-37456726 None:intergenic 35.0%
GGTGGTTTAAAAGGATAGTT+CGG - chr1_2:37456708-37456727 None:intergenic 35.0%
!! GGTAATGGAAAAAAGAAGCA+CGG - chr1_2:37456944-37456963 None:intergenic 35.0%
GTCCTATACAATCACAAAGT+AGG - chr1_2:37457051-37457070 None:intergenic 35.0%
TTGTGATTGTATAGGACAAG+TGG + chr1_2:37457054-37457073 Msa0069200:intron 35.0%
! TTTGGAATGATAAGGAAGGT+TGG + chr1_2:37457250-37457269 Msa0069200:intron 35.0%
TTCAATGACTCTATTCCTTG+AGG + chr1_2:37457387-37457406 Msa0069200:intron 35.0%
TCAATGACTCTATTCCTTGA+GGG + chr1_2:37457388-37457407 Msa0069200:intron 35.0%
TCATGCAGATTTCAAGAGAA+TGG + chr1_2:37457520-37457539 Msa0069200:CDS 35.0%
AACCTATAAGGACTTCCATT+GGG + chr1_2:37455456-37455475 Msa0069200:five_prime_UTR 35.0%
!! TCAGTTATTTCTTTCCCCAA+TGG - chr1_2:37455474-37455493 None:intergenic 35.0%
! TTCAACAGGGGAATTTTCTT+CGG - chr1_2:37455826-37455845 None:intergenic 35.0%
AGAAAATTCCCCTGTTGAAT+CGG + chr1_2:37455827-37455846 Msa0069200:CDS 35.0%
TTAGAAATATTTAAGGGGGG+AGG - chr1_2:37455943-37455962 None:intergenic 35.0%
CAGACTACAGAAGGAATTAA+TGG + chr1_2:37456195-37456214 Msa0069200:intron 35.0%
! AGTAAAGTACTAAGTATGCG+TGG - chr1_2:37456392-37456411 None:intergenic 35.0%
TTCATTCGTTCTCACAAAGA+CGG + chr1_2:37456512-37456531 Msa0069200:intron 35.0%
!!! TTACTTTTTGTGCAGATGAG+TGG + chr1_2:37456558-37456577 Msa0069200:intron 35.0%
TGGTTTAAAAGGATAGTTCG+GGG - chr1_2:37456706-37456725 None:intergenic 35.0%
GTGGTTTAAAAGGATAGTTC+GGG - chr1_2:37456707-37456726 None:intergenic 35.0%
GGTGGTTTAAAAGGATAGTT+CGG - chr1_2:37456708-37456727 None:intergenic 35.0%
!! GGTAATGGAAAAAAGAAGCA+CGG - chr1_2:37456944-37456963 None:intergenic 35.0%
GTCCTATACAATCACAAAGT+AGG - chr1_2:37457051-37457070 None:intergenic 35.0%
TTGTGATTGTATAGGACAAG+TGG + chr1_2:37457054-37457073 Msa0069200:intron 35.0%
! TTTGGAATGATAAGGAAGGT+TGG + chr1_2:37457250-37457269 Msa0069200:intron 35.0%
TTCAATGACTCTATTCCTTG+AGG + chr1_2:37457387-37457406 Msa0069200:intron 35.0%
TCAATGACTCTATTCCTTGA+GGG + chr1_2:37457388-37457407 Msa0069200:intron 35.0%
TCATGCAGATTTCAAGAGAA+TGG + chr1_2:37457520-37457539 Msa0069200:CDS 35.0%
GACTAAAACAACTTTGGGTG+CGG + chr1_2:37455384-37455403 Msa0069200:five_prime_UTR 40.0%
CAACCTATAAGGACTTCCAT+TGG + chr1_2:37455455-37455474 Msa0069200:five_prime_UTR 40.0%
ACCTATAAGGACTTCCATTG+GGG + chr1_2:37455457-37455476 Msa0069200:five_prime_UTR 40.0%
TTGTATCCTTAACCAGTGTC+CGG + chr1_2:37455590-37455609 Msa0069200:five_prime_UTR 40.0%
GAAAATGTTAATCGATGCCC+CGG - chr1_2:37455612-37455631 None:intergenic 40.0%
AGAATTTCGCTGAAAGTGGT+AGG - chr1_2:37455671-37455690 None:intergenic 40.0%
TCTGAGCCGTTGATCTAATT+AGG + chr1_2:37455757-37455776 Msa0069200:five_prime_UTR 40.0%
ACACAACTTCCGTTTCTCAA+AGG + chr1_2:37455910-37455929 Msa0069200:CDS 40.0%
! GGAGATGAACCTTTGAGAAA+CGG - chr1_2:37455922-37455941 None:intergenic 40.0%
GAAGGAATTAATGGCTCTCA+TGG + chr1_2:37456204-37456223 Msa0069200:CDS 40.0%
! GTTTGGTAACCTATGAAGCA+CGG + chr1_2:37456296-37456315 Msa0069200:intron 40.0%
TAGTTACCCACTATGAAGCA+CGG - chr1_2:37456364-37456383 None:intergenic 40.0%
! TCATCAGCATTTAGAGTGAG+TGG - chr1_2:37456538-37456557 None:intergenic 40.0%
!! ACATGGATTGGCACAATTCA+AGG + chr1_2:37456627-37456646 Msa0069200:CDS 40.0%
TGGAAAAGGAACTCCTTATG+AGG + chr1_2:37456650-37456669 Msa0069200:CDS 40.0%
GGAAAAGGAACTCCTTATGA+GGG + chr1_2:37456651-37456670 Msa0069200:CDS 40.0%
GTTTAAAAGGATAGTTCGGG+GGG - chr1_2:37456704-37456723 None:intergenic 40.0%
GGTTTAAAAGGATAGTTCGG+GGG - chr1_2:37456705-37456724 None:intergenic 40.0%
TTCACTTGGGGTGGTTTAAA+AGG - chr1_2:37456717-37456736 None:intergenic 40.0%
GTCGTCTCAAATTTCACTTG+GGG - chr1_2:37456729-37456748 None:intergenic 40.0%
CGTCGTCTCAAATTTCACTT+GGG - chr1_2:37456730-37456749 None:intergenic 40.0%
ACGTCGTCTCAAATTTCACT+TGG - chr1_2:37456731-37456750 None:intergenic 40.0%
CATCCAAATGTTGACCAGTT+TGG + chr1_2:37456756-37456775 Msa0069200:CDS 40.0%
TTGCCAAACTGGTCAACATT+TGG - chr1_2:37456762-37456781 None:intergenic 40.0%
CTAGACAAATGTTGCCAAAC+TGG - chr1_2:37456773-37456792 None:intergenic 40.0%
CATTTGTCTAGACATCCTTC+AGG + chr1_2:37456782-37456801 Msa0069200:CDS 40.0%
ACATAATCCAGGGTAATCTG+AGG + chr1_2:37456913-37456932 Msa0069200:intron 40.0%
AGCAGTAAACACACAGGTAA+TGG - chr1_2:37456959-37456978 None:intergenic 40.0%
TACCTGTGTGTTTACTGCTT+TGG + chr1_2:37456960-37456979 Msa0069200:intron 40.0%
ATCCAAAGCAGTAAACACAC+AGG - chr1_2:37456965-37456984 None:intergenic 40.0%
CTGCAGCATAGTTGTTTAGA+GGG - chr1_2:37457227-37457246 None:intergenic 40.0%
TCTGCAGCATAGTTGTTTAG+AGG - chr1_2:37457228-37457247 None:intergenic 40.0%
!! TGCAGAGCTTTGGAATGATA+AGG + chr1_2:37457242-37457261 Msa0069200:CDS 40.0%
!! GAGCTTTGGAATGATAAGGA+AGG + chr1_2:37457246-37457265 Msa0069200:CDS 40.0%
!!! TGCAAGTTTTAGAACCCTCA+AGG - chr1_2:37457405-37457424 None:intergenic 40.0%
CTAGTGCTCTAGTAGATTGT+AGG + chr1_2:37457437-37457456 Msa0069200:intron 40.0%
!!! GGTCGAATGCGTATTTTAAC+TGG + chr1_2:37457479-37457498 Msa0069200:CDS 40.0%
!!! ATTTTAACTGGTGCTGCTCA+TGG + chr1_2:37457491-37457510 Msa0069200:CDS 40.0%
GACTAAAACAACTTTGGGTG+CGG + chr1_2:37455384-37455403 Msa0069200:five_prime_UTR 40.0%
CAACCTATAAGGACTTCCAT+TGG + chr1_2:37455455-37455474 Msa0069200:five_prime_UTR 40.0%
ACCTATAAGGACTTCCATTG+GGG + chr1_2:37455457-37455476 Msa0069200:five_prime_UTR 40.0%
TTGTATCCTTAACCAGTGTC+CGG + chr1_2:37455590-37455609 Msa0069200:five_prime_UTR 40.0%
GAAAATGTTAATCGATGCCC+CGG - chr1_2:37455612-37455631 None:intergenic 40.0%
AGAATTTCGCTGAAAGTGGT+AGG - chr1_2:37455671-37455690 None:intergenic 40.0%
TCTGAGCCGTTGATCTAATT+AGG + chr1_2:37455757-37455776 Msa0069200:five_prime_UTR 40.0%
ACACAACTTCCGTTTCTCAA+AGG + chr1_2:37455910-37455929 Msa0069200:CDS 40.0%
! GGAGATGAACCTTTGAGAAA+CGG - chr1_2:37455922-37455941 None:intergenic 40.0%
GAAGGAATTAATGGCTCTCA+TGG + chr1_2:37456204-37456223 Msa0069200:CDS 40.0%
! GTTTGGTAACCTATGAAGCA+CGG + chr1_2:37456296-37456315 Msa0069200:intron 40.0%
TAGTTACCCACTATGAAGCA+CGG - chr1_2:37456364-37456383 None:intergenic 40.0%
! TCATCAGCATTTAGAGTGAG+TGG - chr1_2:37456538-37456557 None:intergenic 40.0%
!! ACATGGATTGGCACAATTCA+AGG + chr1_2:37456627-37456646 Msa0069200:CDS 40.0%
TGGAAAAGGAACTCCTTATG+AGG + chr1_2:37456650-37456669 Msa0069200:CDS 40.0%
GGAAAAGGAACTCCTTATGA+GGG + chr1_2:37456651-37456670 Msa0069200:CDS 40.0%
GTTTAAAAGGATAGTTCGGG+GGG - chr1_2:37456704-37456723 None:intergenic 40.0%
GGTTTAAAAGGATAGTTCGG+GGG - chr1_2:37456705-37456724 None:intergenic 40.0%
TTCACTTGGGGTGGTTTAAA+AGG - chr1_2:37456717-37456736 None:intergenic 40.0%
GTCGTCTCAAATTTCACTTG+GGG - chr1_2:37456729-37456748 None:intergenic 40.0%
CGTCGTCTCAAATTTCACTT+GGG - chr1_2:37456730-37456749 None:intergenic 40.0%
ACGTCGTCTCAAATTTCACT+TGG - chr1_2:37456731-37456750 None:intergenic 40.0%
CATCCAAATGTTGACCAGTT+TGG + chr1_2:37456756-37456775 Msa0069200:CDS 40.0%
TTGCCAAACTGGTCAACATT+TGG - chr1_2:37456762-37456781 None:intergenic 40.0%
CTAGACAAATGTTGCCAAAC+TGG - chr1_2:37456773-37456792 None:intergenic 40.0%
CATTTGTCTAGACATCCTTC+AGG + chr1_2:37456782-37456801 Msa0069200:CDS 40.0%
ACATAATCCAGGGTAATCTG+AGG + chr1_2:37456913-37456932 Msa0069200:intron 40.0%
AGCAGTAAACACACAGGTAA+TGG - chr1_2:37456959-37456978 None:intergenic 40.0%
TACCTGTGTGTTTACTGCTT+TGG + chr1_2:37456960-37456979 Msa0069200:intron 40.0%
ATCCAAAGCAGTAAACACAC+AGG - chr1_2:37456965-37456984 None:intergenic 40.0%
CTGCAGCATAGTTGTTTAGA+GGG - chr1_2:37457227-37457246 None:intergenic 40.0%
TCTGCAGCATAGTTGTTTAG+AGG - chr1_2:37457228-37457247 None:intergenic 40.0%
!! TGCAGAGCTTTGGAATGATA+AGG + chr1_2:37457242-37457261 Msa0069200:CDS 40.0%
!! GAGCTTTGGAATGATAAGGA+AGG + chr1_2:37457246-37457265 Msa0069200:CDS 40.0%
!!! TGCAAGTTTTAGAACCCTCA+AGG - chr1_2:37457405-37457424 None:intergenic 40.0%
CTAGTGCTCTAGTAGATTGT+AGG + chr1_2:37457437-37457456 Msa0069200:intron 40.0%
!!! GGTCGAATGCGTATTTTAAC+TGG + chr1_2:37457479-37457498 Msa0069200:CDS 40.0%
!!! ATTTTAACTGGTGCTGCTCA+TGG + chr1_2:37457491-37457510 Msa0069200:CDS 40.0%
AACTTTGGGTGCGGAATACT+TGG + chr1_2:37455393-37455412 Msa0069200:five_prime_UTR 45.0%
TCCCCAATGGAAGTCCTTAT+AGG - chr1_2:37455461-37455480 None:intergenic 45.0%
TGTATCCTTAACCAGTGCTC+CGG - chr1_2:37455526-37455545 None:intergenic 45.0%
TGTATCCTTAACCAGTGTCC+GGG + chr1_2:37455591-37455610 Msa0069200:five_prime_UTR 45.0%
CGGAGGCCTAATTAGATCAA+CGG - chr1_2:37455766-37455785 None:intergenic 45.0%
CTAATTAGGCCTCCGTTGAT+CGG + chr1_2:37455771-37455790 Msa0069200:five_prime_UTR 45.0%
ACCTCCATGATTCCGATCAA+CGG - chr1_2:37455786-37455805 None:intergenic 45.0%
! AACAGGGGAATTTTCTTCGG+CGG - chr1_2:37455823-37455842 None:intergenic 45.0%
AAATTCCCCTGTTGAATCGG+CGG + chr1_2:37455830-37455849 Msa0069200:CDS 45.0%
GTGCAATTGCAGACTACAGA+AGG + chr1_2:37456186-37456205 Msa0069200:intron 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr1_2:37456308-37456327 None:intergenic 45.0%
ATGAAGCACGGATACAGACA+CGG + chr1_2:37456308-37456327 Msa0069200:intron 45.0%
TATGAAGCACGGACACTTCT+TGG - chr1_2:37456353-37456372 None:intergenic 45.0%
AAGTGTCCGTGCTTCATAGT+GGG + chr1_2:37456355-37456374 Msa0069200:intron 45.0%
! CTTTTTGTGCAGATGAGTGG+AGG + chr1_2:37456561-37456580 Msa0069200:intron 45.0%
!! TGGATTGGCACAATTCAAGG+TGG + chr1_2:37456630-37456649 Msa0069200:CDS 45.0%
GGCACAATTCAAGGTGGAAA+AGG + chr1_2:37456636-37456655 Msa0069200:CDS 45.0%
GTCTCAAATTTCACTTGGGG+TGG - chr1_2:37456726-37456745 None:intergenic 45.0%
ACTGACACAAACACAGACAC+CGG + chr1_2:37456852-37456871 Msa0069200:intron 45.0%
CTGATCAGACAGGAACACAA+AGG - chr1_2:37457171-37457190 None:intergenic 45.0%
TCTAACAGCAGAGCCTAACT+TGG + chr1_2:37457197-37457216 Msa0069200:intron 45.0%
TTTAGAGGGCTCTCCAAGTT+AGG - chr1_2:37457213-37457232 None:intergenic 45.0%
ACAACTATGCTGCAGAGCTT+TGG + chr1_2:37457232-37457251 Msa0069200:CDS 45.0%
GTCCACAAGCAGTATTTAGC+TGG + chr1_2:37457542-37457561 Msa0069200:CDS 45.0%
CTCCAGCTAAATACTGCTTG+TGG - chr1_2:37457547-37457566 None:intergenic 45.0%
AACTTTGGGTGCGGAATACT+TGG + chr1_2:37455393-37455412 Msa0069200:five_prime_UTR 45.0%
TCCCCAATGGAAGTCCTTAT+AGG - chr1_2:37455461-37455480 None:intergenic 45.0%
TGTATCCTTAACCAGTGCTC+CGG - chr1_2:37455526-37455545 None:intergenic 45.0%
TGTATCCTTAACCAGTGTCC+GGG + chr1_2:37455591-37455610 Msa0069200:five_prime_UTR 45.0%
CGGAGGCCTAATTAGATCAA+CGG - chr1_2:37455766-37455785 None:intergenic 45.0%
CTAATTAGGCCTCCGTTGAT+CGG + chr1_2:37455771-37455790 Msa0069200:five_prime_UTR 45.0%
ACCTCCATGATTCCGATCAA+CGG - chr1_2:37455786-37455805 None:intergenic 45.0%
! AACAGGGGAATTTTCTTCGG+CGG - chr1_2:37455823-37455842 None:intergenic 45.0%
AAATTCCCCTGTTGAATCGG+CGG + chr1_2:37455830-37455849 Msa0069200:CDS 45.0%
GTGCAATTGCAGACTACAGA+AGG + chr1_2:37456186-37456205 Msa0069200:intron 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr1_2:37456308-37456327 None:intergenic 45.0%
ATGAAGCACGGATACAGACA+CGG + chr1_2:37456308-37456327 Msa0069200:intron 45.0%
TATGAAGCACGGACACTTCT+TGG - chr1_2:37456353-37456372 None:intergenic 45.0%
AAGTGTCCGTGCTTCATAGT+GGG + chr1_2:37456355-37456374 Msa0069200:intron 45.0%
! CTTTTTGTGCAGATGAGTGG+AGG + chr1_2:37456561-37456580 Msa0069200:intron 45.0%
!! TGGATTGGCACAATTCAAGG+TGG + chr1_2:37456630-37456649 Msa0069200:CDS 45.0%
GGCACAATTCAAGGTGGAAA+AGG + chr1_2:37456636-37456655 Msa0069200:CDS 45.0%
GTCTCAAATTTCACTTGGGG+TGG - chr1_2:37456726-37456745 None:intergenic 45.0%
ACTGACACAAACACAGACAC+CGG + chr1_2:37456852-37456871 Msa0069200:intron 45.0%
CTGATCAGACAGGAACACAA+AGG - chr1_2:37457171-37457190 None:intergenic 45.0%
TCTAACAGCAGAGCCTAACT+TGG + chr1_2:37457197-37457216 Msa0069200:intron 45.0%
TTTAGAGGGCTCTCCAAGTT+AGG - chr1_2:37457213-37457232 None:intergenic 45.0%
ACAACTATGCTGCAGAGCTT+TGG + chr1_2:37457232-37457251 Msa0069200:CDS 45.0%
GTCCACAAGCAGTATTTAGC+TGG + chr1_2:37457542-37457561 Msa0069200:CDS 45.0%
CTCCAGCTAAATACTGCTTG+TGG - chr1_2:37457547-37457566 None:intergenic 45.0%
GTCATGTTAACCGGTGTCTC+CGG + chr1_2:37455504-37455523 Msa0069200:five_prime_UTR 50.0%
GTATCCTTAACCAGTGTCCG+GGG + chr1_2:37455592-37455611 Msa0069200:five_prime_UTR 50.0%
TCCATGATTCCGATCAACGG+AGG - chr1_2:37455783-37455802 None:intergenic 50.0%
TCCGTTGATCGGAATCATGG+AGG + chr1_2:37455782-37455801 Msa0069200:exon 50.0%
GCTTCTTGGAGGATGATCGA+CGG - chr1_2:37455866-37455885 None:intergenic 50.0%
GAAGTTGTGTCAGCAGGAAG+AGG - chr1_2:37455900-37455919 None:intergenic 50.0%
GAAACGGAAGTTGTGTCAGC+AGG - chr1_2:37455906-37455925 None:intergenic 50.0%
TTCTTGGTTTAGGCGTGTCC+TGG - chr1_2:37456337-37456356 None:intergenic 50.0%
GCACGGACACTTCTTGGTTT+AGG - chr1_2:37456347-37456366 None:intergenic 50.0%
! GAAGTGTCCGTGCTTCATAG+TGG + chr1_2:37456354-37456373 Msa0069200:intron 50.0%
CAGATGAGTGGAGGAGATCT+TGG + chr1_2:37456570-37456589 Msa0069200:intron 50.0%
! GGAGTATCTGCTTTCCCTGA+TGG + chr1_2:37456591-37456610 Msa0069200:CDS 50.0%
ATAGTTCGGGGGGAAACGTA+AGG - chr1_2:37456694-37456713 None:intergenic 50.0%
GTCATGTTAACCGGTGTCTC+CGG + chr1_2:37455504-37455523 Msa0069200:five_prime_UTR 50.0%
GTATCCTTAACCAGTGTCCG+GGG + chr1_2:37455592-37455611 Msa0069200:five_prime_UTR 50.0%
TCCATGATTCCGATCAACGG+AGG - chr1_2:37455783-37455802 None:intergenic 50.0%
TCCGTTGATCGGAATCATGG+AGG + chr1_2:37455782-37455801 Msa0069200:exon 50.0%
GCTTCTTGGAGGATGATCGA+CGG - chr1_2:37455866-37455885 None:intergenic 50.0%
GAAGTTGTGTCAGCAGGAAG+AGG - chr1_2:37455900-37455919 None:intergenic 50.0%
GAAACGGAAGTTGTGTCAGC+AGG - chr1_2:37455906-37455925 None:intergenic 50.0%
TTCTTGGTTTAGGCGTGTCC+TGG - chr1_2:37456337-37456356 None:intergenic 50.0%
GCACGGACACTTCTTGGTTT+AGG - chr1_2:37456347-37456366 None:intergenic 50.0%
! GAAGTGTCCGTGCTTCATAG+TGG + chr1_2:37456354-37456373 Msa0069200:intron 50.0%
CAGATGAGTGGAGGAGATCT+TGG + chr1_2:37456570-37456589 Msa0069200:intron 50.0%
! GGAGTATCTGCTTTCCCTGA+TGG + chr1_2:37456591-37456610 Msa0069200:CDS 50.0%
ATAGTTCGGGGGGAAACGTA+AGG - chr1_2:37456694-37456713 None:intergenic 50.0%
!! TGTCTCCGGAGCACTGGTTA+AGG + chr1_2:37455518-37455537 Msa0069200:five_prime_UTR 55.0%
TTAATCGATGCCCCGGACAC+TGG - chr1_2:37455605-37455624 None:intergenic 55.0%
GCCTCCGTTGATCGGAATCA+TGG + chr1_2:37455779-37455798 Msa0069200:exon 55.0%
CTTCGGCGGTGGTGTTTGAT+CGG - chr1_2:37455809-37455828 None:intergenic 55.0%
! AGGGGAATTTTCTTCGGCGG+TGG - chr1_2:37455820-37455839 None:intergenic 55.0%
!! ACTGACCGCCGATTCAACAG+GGG - chr1_2:37455838-37455857 None:intergenic 55.0%
!! GACTGACCGCCGATTCAACA+GGG - chr1_2:37455839-37455858 None:intergenic 55.0%
TCTTGGAGGATGATCGACGG+TGG - chr1_2:37455863-37455882 None:intergenic 55.0%
AGAAGCGAGTGGCTTCTTGG+AGG - chr1_2:37455877-37455896 None:intergenic 55.0%
AGGAGAAGCGAGTGGCTTCT+TGG - chr1_2:37455880-37455899 None:intergenic 55.0%
GGACACTCCTCAGATTACCC+TGG - chr1_2:37456923-37456942 None:intergenic 55.0%
!! TGTCTCCGGAGCACTGGTTA+AGG + chr1_2:37455518-37455537 Msa0069200:five_prime_UTR 55.0%
TTAATCGATGCCCCGGACAC+TGG - chr1_2:37455605-37455624 None:intergenic 55.0%
GCCTCCGTTGATCGGAATCA+TGG + chr1_2:37455779-37455798 Msa0069200:exon 55.0%
CTTCGGCGGTGGTGTTTGAT+CGG - chr1_2:37455809-37455828 None:intergenic 55.0%
! AGGGGAATTTTCTTCGGCGG+TGG - chr1_2:37455820-37455839 None:intergenic 55.0%
!! ACTGACCGCCGATTCAACAG+GGG - chr1_2:37455838-37455857 None:intergenic 55.0%
!! GACTGACCGCCGATTCAACA+GGG - chr1_2:37455839-37455858 None:intergenic 55.0%
TCTTGGAGGATGATCGACGG+TGG - chr1_2:37455863-37455882 None:intergenic 55.0%
AGAAGCGAGTGGCTTCTTGG+AGG - chr1_2:37455877-37455896 None:intergenic 55.0%
AGGAGAAGCGAGTGGCTTCT+TGG - chr1_2:37455880-37455899 None:intergenic 55.0%
GGACACTCCTCAGATTACCC+TGG - chr1_2:37456923-37456942 None:intergenic 55.0%
AACCAGTGCTCCGGAGACAC+CGG - chr1_2:37455517-37455536 None:intergenic 60.0%
! GATGCCCCGGACACTGGTTA+AGG - chr1_2:37455599-37455618 None:intergenic 60.0%
!! CGACTGACCGCCGATTCAAC+AGG - chr1_2:37455840-37455859 None:intergenic 60.0%
GCAGGAAGAGGAGAAGCGAG+TGG - chr1_2:37455888-37455907 None:intergenic 60.0%
CGGATACAGACACGGACACC+AGG + chr1_2:37456316-37456335 Msa0069200:intron 60.0%
!! CCGTGTGTCGGTGTTGTGTC+CGG - chr1_2:37456874-37456893 None:intergenic 60.0%
CCGGACACAACACCGACACA+CGG + chr1_2:37456871-37456890 Msa0069200:intron 60.0%
AACCAGTGCTCCGGAGACAC+CGG - chr1_2:37455517-37455536 None:intergenic 60.0%
! GATGCCCCGGACACTGGTTA+AGG - chr1_2:37455599-37455618 None:intergenic 60.0%
!! CGACTGACCGCCGATTCAAC+AGG - chr1_2:37455840-37455859 None:intergenic 60.0%
GCAGGAAGAGGAGAAGCGAG+TGG - chr1_2:37455888-37455907 None:intergenic 60.0%
CGGATACAGACACGGACACC+AGG + chr1_2:37456316-37456335 Msa0069200:intron 60.0%
!! CCGTGTGTCGGTGTTGTGTC+CGG - chr1_2:37456874-37456893 None:intergenic 60.0%
CCGGACACAACACCGACACA+CGG + chr1_2:37456871-37456890 Msa0069200:intron 60.0%
AACCGGTGTCTCCGGAGCAC+TGG + chr1_2:37455512-37455531 Msa0069200:five_prime_UTR 65.0%
AACCGGTGTCTCCGGAGCAC+TGG + chr1_2:37455512-37455531 Msa0069200:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 37455360 37457589 37455360 ID=Msa0069200;Name=Msa0069200
chr1_2 mRNA 37455360 37457589 37455360 ID=Msa0069200-mRNA-1;Parent=Msa0069200;Name=Msa0069200-mRNA-1;_AED=0.23;_eAED=0.24;_QI=438|0.6|0.66|1|1|1|6|0|216
chr1_2 exon 37455360 37455931 37455360 ID=Msa0069200-mRNA-1:exon:11784;Parent=Msa0069200-mRNA-1
chr1_2 exon 37456198 37456225 37456198 ID=Msa0069200-mRNA-1:exon:11785;Parent=Msa0069200-mRNA-1
chr1_2 exon 37456573 37456803 37456573 ID=Msa0069200-mRNA-1:exon:11786;Parent=Msa0069200-mRNA-1
chr1_2 exon 37457068 37457131 37457068 ID=Msa0069200-mRNA-1:exon:11787;Parent=Msa0069200-mRNA-1
chr1_2 exon 37457205 37457267 37457205 ID=Msa0069200-mRNA-1:exon:11788;Parent=Msa0069200-mRNA-1
chr1_2 exon 37457459 37457589 37457459 ID=Msa0069200-mRNA-1:exon:11789;Parent=Msa0069200-mRNA-1
chr1_2 five_prime_UTR 37455360 37455797 37455360 ID=Msa0069200-mRNA-1:five_prime_utr;Parent=Msa0069200-mRNA-1
chr1_2 CDS 37455798 37455931 37455798 ID=Msa0069200-mRNA-1:cds;Parent=Msa0069200-mRNA-1
chr1_2 CDS 37456198 37456225 37456198 ID=Msa0069200-mRNA-1:cds;Parent=Msa0069200-mRNA-1
chr1_2 CDS 37456573 37456803 37456573 ID=Msa0069200-mRNA-1:cds;Parent=Msa0069200-mRNA-1
chr1_2 CDS 37457068 37457131 37457068 ID=Msa0069200-mRNA-1:cds;Parent=Msa0069200-mRNA-1
chr1_2 CDS 37457205 37457267 37457205 ID=Msa0069200-mRNA-1:cds;Parent=Msa0069200-mRNA-1
chr1_2 CDS 37457459 37457589 37457459 ID=Msa0069200-mRNA-1:cds;Parent=Msa0069200-mRNA-1
Gene Sequence

>Msa0069200

ATGGAGGTCCGATCAAACACCACCGCCGAAGAAAATTCCCCTGTTGAATCGGCGGTCAGTCGCCACCGTCGATCATCCTCCAAGAAGCCACTCGCTTCTCCTCTTCCTGCTGACACAACTTCCGTTTCTCAAAGACTACAGAAGGAATTAATGGCTCTCATGATGAGTGGAGGAGATCTTGGAGTATCTGCTTTCCCTGATGGTGAGAATATTTTTACATGGATTGGCACAATTCAAGGTGGAAAAGGAACTCCTTATGAGGGTTTATCTTATAAACTTTCCTTACGTTTCCCCCCGAACTATCCTTTTAAACCACCCCAAGTGAAATTTGAGACGACGTGCTTTCATCCAAATGTTGACCAGTTTGGCAACATTTGTCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGACTGTAGAACTATGCTTCTGTCTATACAAAGTCTATTGGAAGCAGAGCCTAACTTGGAGAGCCCTCTAAACAACTATGCTGCAGAGCTTTGGAATGATAAGGAAGGTTTTAATCTTTGTAGATTTGGTCGAATGCGTATTTTAACTGGTGCTGCTCATGGAATATATCATGCAGATTTCAAGAGAATGGTCCACAAGCAGTATTTAGCTGGAGAAGCACCTGCACCTGAAAGTTGA
Protein sequence

>Msa0069200

MEVRSNTTAEENSPVESAVSRHRRSSSKKPLASPLPADTTSVSQRLQKELMALMMSGGDLGVSAFPDGENIFTWIGTIQGGKGTPYEGLSYKLSLRFPPNYPFKPPQVKFETTCFHPNVDQFGNICLDILQDKWSSAYDCRTMLLSIQSLLEAEPNLESPLNNYAAELWNDKEGFNLCRFGRMRILTGAAHGIYHADFKRMVHKQYLAGEAPAPES*