AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744100 MtrunA17_Chr5g0446951 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0744100 MtrunA17_Chr5g0446941 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0744100 MtrunA17_Chr6g0469201 88.160 701 79 3 1 699 1 699 0.0 1186
Msa0744100 MtrunA17_Chr1g0202601 83.429 700 92 3 1 699 6 682 0.0 1110
Msa0744100 MtrunA17_Chr1g0156731 48.867 706 320 8 5 673 78 779 0.0 642
Msa0744100 MtrunA17_Chr5g0447581 45.562 676 345 10 5 667 90 755 0.0 577
Msa0744100 MtrunA17_Chr5g0420861 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744100 AT5G56000.1 90.714 700 63 2 1 699 1 699 0.0 1205
Msa0744100 AT5G56030.1 92.286 700 52 2 1 699 1 699 0.0 1196
Msa0744100 AT5G56010.1 92.000 700 54 2 1 699 1 699 0.0 1194
Msa0744100 AT5G56030.2 88.615 729 52 3 1 699 1 728 0.0 1181
Msa0744100 AT5G52640.1 85.185 702 99 5 1 699 1 700 0.0 1148
Msa0744100 AT4G24190.1 50.356 703 310 8 5 672 77 775 0.0 643
Msa0744100 AT4G24190.2 50.356 703 310 8 5 672 77 775 0.0 642
Msa0744100 AT2G04030.1 47.485 676 329 11 5 668 77 738 0.0 597
Msa0744100 AT3G07770.1 45.495 677 346 10 5 668 95 761 0.0 590
Msa0744100 AT3G07770.3 45.495 677 346 10 5 668 95 761 0.0 590
Msa0744100 AT3G07770.2 45.495 677 346 10 5 668 95 761 0.0 590
Msa0744100 AT2G04030.2 47.033 674 332 11 5 668 77 735 0.0 588

Find 195 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGACAGTTGGAGTTTA+AGG 0.160886 5_1:+64782449 Msa0744100:CDS
AATCTCCTTGTTACTGTAAA+AGG 0.195492 5_1:-64780715 None:intergenic
TTCGCAACGAATATTAATTT+AGG 0.229845 5_1:-64783927 None:intergenic
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5_1:+64783458 Msa0744100:CDS
TTTCCTCAGCTCCTCCATTA+TGG 0.246479 5_1:-64783378 None:intergenic
ACAAGAGACGTTTGCTTTCC+AGG 0.252769 5_1:+64780656 Msa0744100:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5_1:-64782156 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5_1:+64782325 Msa0744100:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5_1:+64782148 Msa0744100:CDS
TTCCTCAGCTCCTCCATTAT+GGG 0.271018 5_1:-64783377 None:intergenic
CTTGATGAGCCCAACACTTT+TGG 0.271765 5_1:+64783488 Msa0744100:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5_1:+64782149 Msa0744100:CDS
ACTATCATTGATAGTGGAAT+TGG 0.289715 5_1:+64781663 Msa0744100:CDS
GTGTTAATTGTGACTATCTT+TGG 0.300881 5_1:+64783801 Msa0744100:three_prime_UTR
CTCCTCCATTATGGGGTTCT+CGG 0.308210 5_1:-64783369 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5_1:-64780637 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5_1:+64782407 Msa0744100:CDS
TCCTCCATTATGGGGTTCTC+GGG 0.353116 5_1:-64783368 None:intergenic
TGAAGTAGTTTCTATTGTTT+AGG 0.357932 5_1:+64783647 Msa0744100:three_prime_UTR
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5_1:+64783248 Msa0744100:CDS
TCATGCTAACTTACCAGCTT+TGG 0.369152 5_1:-64781691 None:intergenic
TCAGGCTTCCTCATCCAAAT+AGG 0.372502 5_1:-64782339 None:intergenic
GACATACAGCTTGATGTTGT+TGG 0.373069 5_1:-64782529 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5_1:+64781840 Msa0744100:CDS
AATGACATTTACTACATTAC+CGG 0.381181 5_1:+64782921 Msa0744100:CDS
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5_1:+64782394 Msa0744100:CDS
ACATACAGCTTGATGTTGTT+GGG 0.394439 5_1:-64782528 None:intergenic
TGTTTGCTCATCGTAAGTTC+TGG 0.395191 5_1:+64783779 Msa0744100:three_prime_UTR
AAGGTGTTGTTGGTCTTGTC+AGG 0.401362 5_1:-64781639 None:intergenic
TCAACAGAACAAGATTCTTA+AGG 0.404319 5_1:+64782665 Msa0744100:CDS
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5_1:+64782221 Msa0744100:CDS
GGTGCTGATGTTAGCATGAT+TGG 0.418135 5_1:+64781877 Msa0744100:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5_1:+64782212 Msa0744100:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5_1:-64782859 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5_1:+64782227 Msa0744100:CDS
CATGAAGGCACAGGCTTTGA+GGG 0.435413 5_1:+64783295 Msa0744100:CDS
ACAAGATTCTTAAGGTCATC+AGG 0.437555 5_1:+64782673 Msa0744100:CDS
CAACCCCGAGAACCCCATAA+TGG 0.440515 5_1:+64783364 Msa0744100:CDS
GTTAGCATGATTGGACAGTT+TGG 0.443805 5_1:+64781886 Msa0744100:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5_1:-64782498 None:intergenic
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5_1:+64783077 Msa0744100:CDS
AATGATAGTCAAGGTGTTGT+TGG 0.456218 5_1:-64781649 None:intergenic
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5_1:+64782977 Msa0744100:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5_1:+64782395 Msa0744100:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5_1:-64782406 None:intergenic
TCGTCCTTTGTGATCTCCTC+AGG 0.466562 5_1:-64782357 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5_1:+64783046 Msa0744100:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.470021 5_1:+64783311 Msa0744100:CDS
GGTGGTAACAATAACCTTCT+CGG 0.473999 5_1:-64781938 None:intergenic
ACCTTGACTATCATTGATAG+TGG 0.474059 5_1:+64781657 Msa0744100:CDS
TCATGAAGGCACAGGCTTTG+AGG 0.476598 5_1:+64783294 Msa0744100:CDS
TATGGCTTCCATGAATTCCT+TGG 0.477216 5_1:-64781848 None:intergenic
AGTGAATGACCCACCAGCTT+GGG 0.479426 5_1:-64781995 None:intergenic
TGAGGACGAGGAAGAGAAGA+AGG 0.480741 5_1:+64782206 Msa0744100:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5_1:-64781589 None:intergenic
AGATCAAAAGGTGCTCTCTT+CGG 0.483306 5_1:-64782486 None:intergenic
CAACTGGTGAAGCTCTTGGC+AGG 0.483720 5_1:+64782031 Msa0744100:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5_1:+64782728 Msa0744100:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5_1:+64782215 Msa0744100:CDS
TGTTAAGCACTTCTCTGTTG+AGG 0.488225 5_1:+64782431 Msa0744100:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5_1:-64782856 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5_1:-64782901 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.489262 5_1:+64782432 Msa0744100:CDS
CAAAGCTTGCTGATTTGCTC+AGG 0.489387 5_1:+64782826 Msa0744100:CDS
AACATCAGCACCAGCAGCTA+TGG 0.489580 5_1:-64781866 None:intergenic
ATTTCTCTTGAAATGTTAAG+TGG 0.491469 5_1:-64782639 None:intergenic
CTTCTCTAAGAACTTGAAGC+TGG 0.492825 5_1:+64782776 Msa0744100:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5_1:+64782302 Msa0744100:CDS
TAGCTTTGTGAAGGGTATTG+TGG 0.493429 5_1:+64782602 Msa0744100:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5_1:+64782104 Msa0744100:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5_1:-64782940 None:intergenic
CTTCTCTGTTGAGGGACAGT+TGG 0.494681 5_1:+64782440 Msa0744100:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5_1:-64782973 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5_1:+64783163 Msa0744100:CDS
GTAGTTTCTATTGTTTAGGA+AGG 0.496454 5_1:+64783651 Msa0744100:three_prime_UTR
AGCTTCACCAGTTGTATCCC+TGG 0.498334 5_1:-64782022 None:intergenic
AGTAGATGAGGAGAAAGAAA+AGG 0.499471 5_1:+64782251 Msa0744100:CDS
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5_1:+64783193 Msa0744100:CDS
TTCATCATCATTGTGCTTGG+TGG 0.500075 5_1:-64781956 None:intergenic
GGAATTGGAATGACCAAAGC+TGG 0.500501 5_1:+64781678 Msa0744100:CDS
GATACAACTGGTGAAGCTCT+TGG 0.501895 5_1:+64782027 Msa0744100:CDS
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5_1:+64781823 Msa0744100:CDS
TGCTTACCTTGTTGCCGAGA+AGG 0.502623 5_1:+64781924 Msa0744100:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5_1:+64782216 Msa0744100:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5_1:+64783239 Msa0744100:CDS
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5_1:+64782978 Msa0744100:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5_1:+64783172 Msa0744100:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5_1:-64782972 None:intergenic
GTGGGTCATTCACTGTGACC+AGG 0.512028 5_1:+64782004 Msa0744100:CDS
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5_1:-64782971 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.516506 5_1:+64782683 Msa0744100:CDS
CTTCATGATCCTCTCCATGT+TGG 0.521693 5_1:-64783279 None:intergenic
ATGATTGGACAGTTTGGTGT+TGG 0.524590 5_1:+64781892 Msa0744100:CDS
TGCTGACATGCCACCATTGG+AGG 0.530142 5_1:+64783574 Msa0744100:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5_1:-64783497 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5_1:+64783518 Msa0744100:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5_1:-64783587 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5_1:+64781831 Msa0744100:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5_1:+64782295 Msa0744100:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5_1:-64783498 None:intergenic
CTGTTCATCATCATTGTGCT+TGG 0.544768 5_1:-64781959 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5_1:+64783571 Msa0744100:CDS
TAAGGTTGAGGAAGTAGATG+AGG 0.545318 5_1:+64782239 Msa0744100:CDS
TTCATGGAAGCCATAGCTGC+TGG 0.547466 5_1:+64781856 Msa0744100:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5_1:+64783047 Msa0744100:CDS
TGAGTATCTTAGCTTTGTGA+AGG 0.548429 5_1:+64782593 Msa0744100:CDS
TCCTCAGCTCCTCCATTATG+GGG 0.548965 5_1:-64783376 None:intergenic
ACCAACAGCATATTCATCAA+TGG 0.549314 5_1:-64783027 None:intergenic
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5_1:+64781985 Msa0744100:CDS
GGAGAGGATCATGAAGGCAC+AGG 0.554892 5_1:+64783286 Msa0744100:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5_1:-64782977 None:intergenic
CAGCTTCAAGTTCTTAGAGA+AGG 0.556190 5_1:-64782775 None:intergenic
GGAAACGTGCTGATGCGGAC+AGG 0.560251 5_1:+64783396 Msa0744100:CDS
TAAAATAACTCTCATCCTCA+AGG 0.561419 5_1:+64782059 Msa0744100:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5_1:+64783252 Msa0744100:CDS
CCAGATTTGGTGAACAACCT+AGG 0.564348 5_1:+64781805 Msa0744100:intron
CAGTGAATGACCCACCAGCT+TGG 0.566153 5_1:-64781996 None:intergenic
GGACTATGTTACCAGGATGA+AGG 0.567325 5_1:+64782890 Msa0744100:CDS
GAAAGAGATTTCTGATGATG+AGG 0.568419 5_1:+64782188 Msa0744100:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5_1:+64782098 Msa0744100:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5_1:-64783487 None:intergenic
ATAATGTGAATGAACAACTC+TGG 0.569519 5_1:-64781615 None:intergenic
ACTGTGACCAGGGATACAAC+TGG 0.570046 5_1:+64782015 Msa0744100:CDS
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5_1:+64783613 Msa0744100:CDS
CAATAACCTTCTCGGCAACA+AGG 0.573151 5_1:-64781930 None:intergenic
TTCTCTAAGAACTTGAAGCT+GGG 0.573524 5_1:+64782777 Msa0744100:CDS
TGGGTCATTCACTGTGACCA+GGG 0.573714 5_1:+64782005 Msa0744100:CDS
TTCACAAAGCTAAGATACTC+AGG 0.575042 5_1:-64782591 None:intergenic
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5_1:+64783181 Msa0744100:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5_1:-64782880 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5_1:+64782998 Msa0744100:CDS
ACAACCTAGGTACCATTGCT+AGG 0.579010 5_1:+64781818 Msa0744100:CDS
TCTCAAACAGCAAGAGAACA+AGG 0.580225 5_1:-64783439 None:intergenic
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5_1:-64781572 None:intergenic
CTATTGTTTAGGAAGGTGTG+AGG 0.582863 5_1:+64783658 Msa0744100:three_prime_UTR
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5_1:+64782331 Msa0744100:CDS
ACTGGTGAAGCTCTTGGCAG+GGG 0.584964 5_1:+64782033 Msa0744100:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5_1:-64780674 None:intergenic
AACTGGTGAAGCTCTTGGCA+GGG 0.587596 5_1:+64782032 Msa0744100:CDS
GCTGAGGAAACGTGCTGATG+CGG 0.588607 5_1:+64783391 Msa0744100:CDS
CAGACCTAGCAATGGTACCT+AGG 0.590700 5_1:-64781822 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5_1:-64782851 None:intergenic
GGCTTTGAGGGATAGCAGCA+TGG 0.597369 5_1:+64783307 Msa0744100:CDS
AGATTACAACAAGTTCTATG+AGG 0.599707 5_1:+64782752 Msa0744100:CDS
ATATGCTGTTGGTCAGCTCA+AGG 0.599835 5_1:+64783037 Msa0744100:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5_1:+64783154 Msa0744100:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5_1:+64783596 Msa0744100:CDS
ACCCCATAATGGAGGAGCTG+AGG 0.602360 5_1:+64783375 Msa0744100:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5_1:+64783607 Msa0744100:CDS
GATTTCTGATGATGAGGACG+AGG 0.608743 5_1:+64782194 Msa0744100:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5_1:-64782884 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5_1:+64783078 Msa0744100:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5_1:+64782883 Msa0744100:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5_1:+64783337 Msa0744100:CDS
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5_1:+64781982 Msa0744100:CDS
TCCACTATCAATGATAGTCA+AGG 0.615433 5_1:-64781658 None:intergenic
GCCATTGATGAATATGCTGT+TGG 0.617134 5_1:+64783026 Msa0744100:CDS
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5_1:+64783535 Msa0744100:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5_1:+64783280 Msa0744100:CDS
CCTCCATTATGGGGTTCTCG+GGG 0.620923 5_1:-64783367 None:intergenic
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5_1:+64783100 Msa0744100:CDS
TGAGCAAACAATAGCTACAC+TGG 0.624684 5_1:-64783766 None:intergenic
GGATCAACTTGAGTATCTTG+AGG 0.629396 5_1:+64782083 Msa0744100:CDS
GAGTATCTTAGCTTTGTGAA+GGG 0.631299 5_1:+64782594 Msa0744100:CDS
AGCAAGGAGAATCGACAACA+CGG 0.631988 5_1:-64783226 None:intergenic
AGGTACCACTCCACCAAGAG+TGG 0.636721 5_1:+64782846 Msa0744100:CDS
CAGGAATGACAAATCTGTCA+AGG 0.640894 5_1:+64783415 Msa0744100:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5_1:+64783265 Msa0744100:CDS
ACTCAAGTTGATCCTCCTTG+AGG 0.641638 5_1:-64782074 None:intergenic
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5_1:-64782110 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5_1:+64781986 Msa0744100:CDS
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5_1:-64783584 None:intergenic
CCCCGAGAACCCCATAATGG+AGG 0.653113 5_1:+64783367 Msa0744100:CDS
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5_1:+64783173 Msa0744100:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5_1:+64782869 Msa0744100:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5_1:-64782970 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5_1:+64783270 Msa0744100:CDS
ATTTCAGGAACGAAATAACA+AGG 0.670109 5_1:-64783877 None:intergenic
TATGTTACCAGGATGAAGGA+AGG 0.670222 5_1:+64782894 Msa0744100:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5_1:+64783595 Msa0744100:CDS
ATGATGATGAACAGTATGTG+TGG 0.676362 5_1:+64781968 Msa0744100:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5_1:-64782554 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5_1:-64783242 None:intergenic
GAAGGGTATTGTGGACTCTG+AGG 0.693168 5_1:+64782611 Msa0744100:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5_1:+64782788 Msa0744100:CDS
AATAACTCTCATCCTCAAGG+AGG 0.699652 5_1:+64782062 Msa0744100:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5_1:-64781830 None:intergenic
CAATTTCAAAGAAAAGCTCG+AGG 0.701411 5_1:-64782716 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5_1:+64782560 Msa0744100:CDS
GAAGCCTGAGGAGATCACAA+AGG 0.711808 5_1:+64782353 Msa0744100:CDS
TGATGATGAACAGTATGTGT+GGG 0.717373 5_1:+64781969 Msa0744100:CDS
TATTTGGATGAGGAAGCCTG+AGG 0.739589 5_1:+64782341 Msa0744100:CDS
GGTGCTACGAGCAAAGAACG+CGG 0.760872 5_1:-64783856 None:intergenic
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5_1:+64783166 Msa0744100:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5_1:-64782551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTATTTTATCAATTTTA+GGG + chr5_1:64780883-64780902 Msa0744100:intron 10.0%
!! TTAAAATTCAATTTCAATTT+GGG - chr5_1:64781149-64781168 None:intergenic 10.0%
!! ATTAAAATTCAATTTCAATT+TGG - chr5_1:64781150-64781169 None:intergenic 10.0%
!!! AAATTGAATTTTAATTAGTT+CGG + chr5_1:64781155-64781174 Msa0744100:intron 10.0%
!!! TTGTCTTTATTTTTAAATTT+TGG + chr5_1:64783707-64783726 Msa0744100:three_prime_UTR 10.0%
!!! TTTTTTTCTTTTTGTTTCTT+AGG + chr5_1:64780793-64780812 Msa0744100:intron 15.0%
!!! TTTTTTCTTTTTGTTTCTTA+GGG + chr5_1:64780794-64780813 Msa0744100:intron 15.0%
!!! ATGATTTTGATGAATTTTTT+CGG + chr5_1:64780845-64780864 Msa0744100:intron 15.0%
!!! GGTATTATTTTATCAATTTT+AGG + chr5_1:64780882-64780901 Msa0744100:intron 15.0%
!! ACTTTCATTCATATAATTAA+AGG - chr5_1:64781259-64781278 None:intergenic 15.0%
!!! TAACTCTTTAATTTTTTGAA+TGG + chr5_1:64781298-64781317 Msa0744100:intron 15.0%
!!! ATTCAATTCTAAAACTAAAA+GGG - chr5_1:64781336-64781355 None:intergenic 15.0%
!!! AATTCAATTCTAAAACTAAA+AGG - chr5_1:64781337-64781356 None:intergenic 15.0%
!! ACTTTCTTTCAAAAAATTAA+AGG - chr5_1:64781369-64781388 None:intergenic 15.0%
!! TATAATTGTTACTAATACTT+TGG + chr5_1:64781433-64781452 Msa0744100:intron 15.0%
!! TGTTAATTGAATATGTTGTT+AGG + chr5_1:64780910-64780929 Msa0744100:intron 20.0%
!! GTTAATTGAATATGTTGTTA+GGG + chr5_1:64780911-64780930 Msa0744100:intron 20.0%
!! TCAACTATGAAACATATATT+CGG - chr5_1:64781100-64781119 None:intergenic 20.0%
!! AAAAATAGATCACAAGATTA+GGG - chr5_1:64781197-64781216 None:intergenic 20.0%
!! AAAAAATAGATCACAAGATT+AGG - chr5_1:64781198-64781217 None:intergenic 20.0%
!!! TTTTTTGAAAGAAAGTTGTT+TGG + chr5_1:64781373-64781392 Msa0744100:intron 20.0%
!!! TTTTTGAAAGAAAGTTGTTT+GGG + chr5_1:64781374-64781393 Msa0744100:intron 20.0%
!! TGTTGTTCTGATTATTATAT+TGG + chr5_1:64781520-64781539 Msa0744100:intron 20.0%
!! GTTGTTCTGATTATTATATT+GGG + chr5_1:64781521-64781540 Msa0744100:intron 20.0%
!!! TTTTATTAGATGCAATTTTC+TGG + chr5_1:64783742-64783761 Msa0744100:three_prime_UTR 20.0%
!! TTTTCGGTTATGATTCTTAT+TGG + chr5_1:64780861-64780880 Msa0744100:intron 25.0%
!!! ATGATTTGTTAGTCATGTTT+AGG + chr5_1:64780999-64781018 Msa0744100:intron 25.0%
!!! GTTTTAGAATTGAATTTGCA+TGG + chr5_1:64781341-64781360 Msa0744100:intron 25.0%
!! GTTATTGTCAATGTTATTTG+AGG + chr5_1:64781410-64781429 Msa0744100:intron 25.0%
! TAATGATGATTTAGTTGTTG+TGG + chr5_1:64781490-64781509 Msa0744100:intron 25.0%
! AATGATGATTTAGTTGTTGT+GGG + chr5_1:64781491-64781510 Msa0744100:intron 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG + chr5_1:64782278-64782297 Msa0744100:CDS 25.0%
! ATTTCTCTTGAAATGTTAAG+TGG - chr5_1:64782642-64782661 None:intergenic 25.0%
! AATGACATTTACTACATTAC+CGG + chr5_1:64782921-64782940 Msa0744100:CDS 25.0%
! TGAAGTAGTTTCTATTGTTT+AGG + chr5_1:64783647-64783666 Msa0744100:three_prime_UTR 25.0%
!!! TTCCTGAAATACACTTTTTT+AGG + chr5_1:64783890-64783909 Msa0744100:three_prime_UTR 25.0%
!!! TCCTGAAATACACTTTTTTA+GGG + chr5_1:64783891-64783910 Msa0744100:three_prime_UTR 25.0%
AATCTCCTTGTTACTGTAAA+AGG - chr5_1:64780718-64780737 None:intergenic 30.0%
AAAAGAAAAAAAGAGCGAAG+AGG - chr5_1:64780785-64780804 None:intergenic 30.0%
! TGAATATGTTGTTAGGGTTT+TGG + chr5_1:64780917-64780936 Msa0744100:intron 30.0%
! GAATATGTTGTTAGGGTTTT+GGG + chr5_1:64780918-64780937 Msa0744100:intron 30.0%
! TACTGTGTAACATTTTCACT+TGG + chr5_1:64781219-64781238 Msa0744100:intron 30.0%
!! ATACTTTGGAATATCAGTGT+TGG + chr5_1:64781447-64781466 Msa0744100:intron 30.0%
!! GAATATCAGTGTTGGATTTT+TGG + chr5_1:64781455-64781474 Msa0744100:intron 30.0%
ATAATGTGAATGAACAACTC+TGG - chr5_1:64781618-64781637 None:intergenic 30.0%
!! ACTATCATTGATAGTGGAAT+TGG + chr5_1:64781663-64781682 Msa0744100:CDS 30.0%
CTGTATTTATGTTCCAGATT+TGG + chr5_1:64781792-64781811 Msa0744100:intron 30.0%
TAAAATAACTCTCATCCTCA+AGG + chr5_1:64782059-64782078 Msa0744100:CDS 30.0%
TTAGCTATCCAATTTCTCTT+TGG + chr5_1:64782148-64782167 Msa0744100:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG + chr5_1:64782149-64782168 Msa0744100:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG + chr5_1:64782281-64782300 Msa0744100:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG - chr5_1:64782501-64782520 None:intergenic 30.0%
TCAACAGAACAAGATTCTTA+AGG + chr5_1:64782665-64782684 Msa0744100:CDS 30.0%
AGATTACAACAAGTTCTATG+AGG + chr5_1:64782752-64782771 Msa0744100:CDS 30.0%
TGAGGATGAAAAGAAAAAGA+TGG + chr5_1:64783118-64783137 Msa0744100:CDS 30.0%
GTAGTTTCTATTGTTTAGGA+AGG + chr5_1:64783651-64783670 Msa0744100:three_prime_UTR 30.0%
GTGTTAATTGTGACTATCTT+TGG + chr5_1:64783801-64783820 Msa0744100:three_prime_UTR 30.0%
ATTTCAGGAACGAAATAACA+AGG - chr5_1:64783880-64783899 None:intergenic 30.0%
! ACCCTAAAAAAGTGTATTTC+AGG - chr5_1:64783895-64783914 None:intergenic 30.0%
! CAACACCTTTTACAGTAACA+AGG + chr5_1:64780710-64780729 Msa0744100:CDS 35.0%
ATATTGGGATGCTGTAATGT+AGG + chr5_1:64781536-64781555 Msa0744100:intron 35.0%
! TTTGGATAAGATCCGTTTTG+AGG + chr5_1:64781560-64781579 Msa0744100:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG + chr5_1:64781561-64781580 Msa0744100:CDS 35.0%
!! AATGATAGTCAAGGTGTTGT+TGG - chr5_1:64781652-64781671 None:intergenic 35.0%
ACCTTGACTATCATTGATAG+TGG + chr5_1:64781657-64781676 Msa0744100:CDS 35.0%
TCCACTATCAATGATAGTCA+AGG - chr5_1:64781661-64781680 None:intergenic 35.0%
! CTTTTTCCTGAGTCTGTAAT+TGG + chr5_1:64781715-64781734 Msa0744100:intron 35.0%
CATAAACCAATTACAGACTC+AGG - chr5_1:64781724-64781743 None:intergenic 35.0%
! ATGATGATGAACAGTATGTG+TGG + chr5_1:64781968-64781987 Msa0744100:CDS 35.0%
! TGATGATGAACAGTATGTGT+GGG + chr5_1:64781969-64781988 Msa0744100:CDS 35.0%
TTCTCAACCCAAAGAGAAAT+TGG - chr5_1:64782159-64782178 None:intergenic 35.0%
! GAAAGAGATTTCTGATGATG+AGG + chr5_1:64782188-64782207 Msa0744100:CDS 35.0%
AGTAGATGAGGAGAAAGAAA+AGG + chr5_1:64782251-64782270 Msa0744100:CDS 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG + chr5_1:64782295-64782314 Msa0744100:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG - chr5_1:64782531-64782550 None:intergenic 35.0%
AGTTGTCCATGATGAAAACA+CGG - chr5_1:64782557-64782576 None:intergenic 35.0%
TTCACAAAGCTAAGATACTC+AGG - chr5_1:64782594-64782613 None:intergenic 35.0%
!! TGAGTATCTTAGCTTTGTGA+AGG + chr5_1:64782593-64782612 Msa0744100:CDS 35.0%
!! GAGTATCTTAGCTTTGTGAA+GGG + chr5_1:64782594-64782613 Msa0744100:CDS 35.0%
ACAAGATTCTTAAGGTCATC+AGG + chr5_1:64782673-64782692 Msa0744100:CDS 35.0%
CAATTTCAAAGAAAAGCTCG+AGG - chr5_1:64782719-64782738 None:intergenic 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG + chr5_1:64782728-64782747 Msa0744100:CDS 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG + chr5_1:64782777-64782796 Msa0744100:CDS 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG - chr5_1:64782806-64782825 None:intergenic 35.0%
GGGATATGAAGTGATTTACA+TGG + chr5_1:64782998-64783017 Msa0744100:CDS 35.0%
ACCAACAGCATATTCATCAA+TGG - chr5_1:64783030-64783049 None:intergenic 35.0%
TAGTGTCTGCAACTAAAGAA+GGG + chr5_1:64783078-64783097 Msa0744100:CDS 35.0%
GAAAAAGATGGAAGAACAGA+AGG + chr5_1:64783130-64783149 Msa0744100:CDS 35.0%
CTCTGCGAAAAAAACCAGAT+CGG + chr5_1:64780623-64780642 Msa0744100:five_prime_UTR 40.0%
GAAAAAAACCAGATCGGCAA+TGG + chr5_1:64780629-64780648 Msa0744100:exon 40.0%
GAAGAGGAAGAAGCTTACAT+CGG - chr5_1:64780769-64780788 None:intergenic 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG - chr5_1:64781592-64781611 None:intergenic 40.0%
TCATGCTAACTTACCAGCTT+TGG - chr5_1:64781694-64781713 None:intergenic 40.0%
TATGGCTTCCATGAATTCCT+TGG - chr5_1:64781851-64781870 None:intergenic 40.0%
GTTAGCATGATTGGACAGTT+TGG + chr5_1:64781886-64781905 Msa0744100:CDS 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG + chr5_1:64781892-64781911 Msa0744100:CDS 40.0%
GGTGGTAACAATAACCTTCT+CGG - chr5_1:64781941-64781960 None:intergenic 40.0%
TTCATCATCATTGTGCTTGG+TGG - chr5_1:64781959-64781978 None:intergenic 40.0%
CTGTTCATCATCATTGTGCT+TGG - chr5_1:64781962-64781981 None:intergenic 40.0%
AATAACTCTCATCCTCAAGG+AGG + chr5_1:64782062-64782081 Msa0744100:CDS 40.0%
GGATCAACTTGAGTATCTTG+AGG + chr5_1:64782083-64782102 Msa0744100:CDS 40.0%
TCTTAACCAAGTCCTTCAGA+CGG - chr5_1:64782113-64782132 None:intergenic 40.0%
TAAGGTTGAGGAAGTAGATG+AGG + chr5_1:64782239-64782258 Msa0744100:CDS 40.0%
GGTGTCTAATGAATGGTCTT+TGG + chr5_1:64782302-64782321 Msa0744100:CDS 40.0%
TGAACAAGCAGAAGCCTATT+TGG + chr5_1:64782325-64782344 Msa0744100:CDS 40.0%
ACAAGAGTCTCACCAATGAT+TGG + chr5_1:64782394-64782413 Msa0744100:CDS 40.0%
CAAGAGTCTCACCAATGATT+GGG + chr5_1:64782395-64782414 Msa0744100:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG - chr5_1:64782409-64782428 None:intergenic 40.0%
!! CAATGATTGGGAAGAGCATT+TGG + chr5_1:64782407-64782426 Msa0744100:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG + chr5_1:64782431-64782450 Msa0744100:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG + chr5_1:64782432-64782451 Msa0744100:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+CGG - chr5_1:64782489-64782508 None:intergenic 40.0%
GACATACAGCTTGATGTTGT+TGG - chr5_1:64782532-64782551 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG + chr5_1:64782560-64782579 Msa0744100:CDS 40.0%
!! TAGCTTTGTGAAGGGTATTG+TGG + chr5_1:64782602-64782621 Msa0744100:CDS 40.0%
TAAGGTCATCAGGAAGAACT+TGG + chr5_1:64782683-64782702 Msa0744100:CDS 40.0%
! CAGCTTCAAGTTCTTAGAGA+AGG - chr5_1:64782778-64782797 None:intergenic 40.0%
! CTTCTCTAAGAACTTGAAGC+TGG + chr5_1:64782776-64782795 Msa0744100:CDS 40.0%
TATGTTACCAGGATGAAGGA+AGG + chr5_1:64782894-64782913 Msa0744100:CDS 40.0%
AACAGCTTTCTTGCTTTCAC+CGG - chr5_1:64782943-64782962 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG - chr5_1:64782975-64782994 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG + chr5_1:64782978-64782997 Msa0744100:CDS 40.0%
GCCATTGATGAATATGCTGT+TGG + chr5_1:64783026-64783045 Msa0744100:CDS 40.0%
CTAGTGTCTGCAACTAAAGA+AGG + chr5_1:64783077-64783096 Msa0744100:CDS 40.0%
GAAGTTCGACAATCTTTGCA+AGG + chr5_1:64783154-64783173 Msa0744100:CDS 40.0%
CAATCTTTGCAAGGTGATCA+AGG + chr5_1:64783163-64783182 Msa0744100:CDS 40.0%
TGTTTAGTGACTGGTGAGTA+TGG + chr5_1:64783248-64783267 Msa0744100:CDS 40.0%
CATGTCAAGCAAGAAGACAA+TGG + chr5_1:64783337-64783356 Msa0744100:CDS 40.0%
CAGGAATGACAAATCTGTCA+AGG + chr5_1:64783415-64783434 Msa0744100:CDS 40.0%
TCTCAAACAGCAAGAGAACA+AGG - chr5_1:64783442-64783461 None:intergenic 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG - chr5_1:64783500-64783519 None:intergenic 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG - chr5_1:64783501-64783520 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG + chr5_1:64783658-64783677 Msa0744100:three_prime_UTR 40.0%
TGAGCAAACAATAGCTACAC+TGG - chr5_1:64783769-64783788 None:intergenic 40.0%
TGTTTGCTCATCGTAAGTTC+TGG + chr5_1:64783779-64783798 Msa0744100:three_prime_UTR 40.0%
AAAAACCAGATCGGCAATGG+CGG + chr5_1:64780632-64780651 Msa0744100:exon 45.0%
ACAAGAGACGTTTGCTTTCC+AGG + chr5_1:64780656-64780675 Msa0744100:CDS 45.0%
! GAAGTTGATTGATCTCAGCC+TGG - chr5_1:64780677-64780696 None:intergenic 45.0%
GGATGCTGTAATGTAGGCTT+TGG + chr5_1:64781542-64781561 Msa0744100:intron 45.0%
!! AAGGTGTTGTTGGTCTTGTC+AGG - chr5_1:64781642-64781661 None:intergenic 45.0%
GGAATTGGAATGACCAAAGC+TGG + chr5_1:64781678-64781697 Msa0744100:CDS 45.0%
CCTAGGTTGTTCACCAAATC+TGG - chr5_1:64781808-64781827 None:intergenic 45.0%
!! CCAGATTTGGTGAACAACCT+AGG + chr5_1:64781805-64781824 Msa0744100:intron 45.0%
ACAACCTAGGTACCATTGCT+AGG + chr5_1:64781818-64781837 Msa0744100:CDS 45.0%
GTCTGGTACCAAGGAATTCA+TGG + chr5_1:64781840-64781859 Msa0744100:CDS 45.0%
!! GGTGCTGATGTTAGCATGAT+TGG + chr5_1:64781877-64781896 Msa0744100:CDS 45.0%
CAATAACCTTCTCGGCAACA+AGG - chr5_1:64781933-64781952 None:intergenic 45.0%
GATACAACTGGTGAAGCTCT+TGG + chr5_1:64782027-64782046 Msa0744100:CDS 45.0%
!! ACTCAAGTTGATCCTCCTTG+AGG - chr5_1:64782077-64782096 None:intergenic 45.0%
! GATTTCTGATGATGAGGACG+AGG + chr5_1:64782194-64782213 Msa0744100:CDS 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG + chr5_1:64782216-64782235 Msa0744100:CDS 45.0%
AGCAGAAGCCTATTTGGATG+AGG + chr5_1:64782331-64782350 Msa0744100:CDS 45.0%
TCAGGCTTCCTCATCCAAAT+AGG - chr5_1:64782342-64782361 None:intergenic 45.0%
TATTTGGATGAGGAAGCCTG+AGG + chr5_1:64782341-64782360 Msa0744100:CDS 45.0%
TGAGGGACAGTTGGAGTTTA+AGG + chr5_1:64782449-64782468 Msa0744100:CDS 45.0%
TGTCCATGATGAAAACACGG+CGG - chr5_1:64782554-64782573 None:intergenic 45.0%
!! CAAAGCTTGCTGATTTGCTC+AGG + chr5_1:64782826-64782845 Msa0744100:CDS 45.0%
TCCTGGTAACATAGTCCTTG+AGG - chr5_1:64782887-64782906 None:intergenic 45.0%
GGACTATGTTACCAGGATGA+AGG + chr5_1:64782890-64782909 Msa0744100:CDS 45.0%
ATTCTGTCCTTCCTTCATCC+TGG - chr5_1:64782904-64782923 None:intergenic 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG - chr5_1:64782974-64782993 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG - chr5_1:64782976-64782995 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG - chr5_1:64782980-64782999 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG + chr5_1:64782977-64782996 Msa0744100:CDS 45.0%
ATATGCTGTTGGTCAGCTCA+AGG + chr5_1:64783037-64783056 Msa0744100:CDS 45.0%
TGGTCAGCTCAAGGAATTTG+AGG + chr5_1:64783046-64783065 Msa0744100:CDS 45.0%
GGTCAGCTCAAGGAATTTGA+GGG + chr5_1:64783047-64783066 Msa0744100:CDS 45.0%
GTTGAAACTTGACGAGAGTG+AGG + chr5_1:64783100-64783119 Msa0744100:CDS 45.0%
TCTTTGCAAGGTGATCAAGG+AGG + chr5_1:64783166-64783185 Msa0744100:CDS 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG + chr5_1:64783173-64783192 Msa0744100:CDS 45.0%
AGCAAGGAGAATCGACAACA+CGG - chr5_1:64783229-64783248 None:intergenic 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG + chr5_1:64783239-64783258 Msa0744100:CDS 45.0%
TCACCAGTCACTAAACAGCA+AGG - chr5_1:64783245-64783264 None:intergenic 45.0%
TAGTGACTGGTGAGTATGGT+TGG + chr5_1:64783252-64783271 Msa0744100:CDS 45.0%
CTTCATGATCCTCTCCATGT+TGG - chr5_1:64783282-64783301 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG + chr5_1:64783280-64783299 Msa0744100:CDS 45.0%
TTCCTCAGCTCCTCCATTAT+GGG - chr5_1:64783380-64783399 None:intergenic 45.0%
TTTCCTCAGCTCCTCCATTA+TGG - chr5_1:64783381-64783400 None:intergenic 45.0%
GAGACTGCTCTTCTTACTTC+TGG + chr5_1:64783458-64783477 Msa0744100:CDS 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG - chr5_1:64783490-64783509 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG + chr5_1:64783488-64783507 Msa0744100:CDS 45.0%
! CTTTTGGCAACAGGATTCAC+AGG + chr5_1:64783504-64783523 Msa0744100:CDS 45.0%
ATTCACAGGATGCTCAAGCT+TGG + chr5_1:64783518-64783537 Msa0744100:CDS 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG + chr5_1:64783535-64783554 Msa0744100:CDS 45.0%
TGTCGGTCAAGCCCTCAAAA+CGG - chr5_1:64781575-64781594 None:intergenic 50.0%
CAGACCTAGCAATGGTACCT+AGG - chr5_1:64781825-64781844 None:intergenic 50.0%
CTAGGTACCATTGCTAGGTC+TGG + chr5_1:64781823-64781842 Msa0744100:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG - chr5_1:64781833-64781852 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG + chr5_1:64781831-64781850 Msa0744100:CDS 50.0%
TTCATGGAAGCCATAGCTGC+TGG + chr5_1:64781856-64781875 Msa0744100:CDS 50.0%
AACATCAGCACCAGCAGCTA+TGG - chr5_1:64781869-64781888 None:intergenic 50.0%
TGCTTACCTTGTTGCCGAGA+AGG + chr5_1:64781924-64781943 Msa0744100:CDS 50.0%
AGTGAATGACCCACCAGCTT+GGG - chr5_1:64781998-64782017 None:intergenic 50.0%
TGGGTCATTCACTGTGACCA+GGG + chr5_1:64782005-64782024 Msa0744100:CDS 50.0%
ACTGTGACCAGGGATACAAC+TGG + chr5_1:64782015-64782034 Msa0744100:CDS 50.0%
AGCTTCACCAGTTGTATCCC+TGG - chr5_1:64782025-64782044 None:intergenic 50.0%
AACTGGTGAAGCTCTTGGCA+GGG + chr5_1:64782032-64782051 Msa0744100:CDS 50.0%
TGAGGACGAGGAAGAGAAGA+AGG + chr5_1:64782206-64782225 Msa0744100:CDS 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG + chr5_1:64782212-64782231 Msa0744100:CDS 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG + chr5_1:64782215-64782234 Msa0744100:CDS 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG + chr5_1:64782221-64782240 Msa0744100:CDS 50.0%
GAAGCCTGAGGAGATCACAA+AGG + chr5_1:64782353-64782372 Msa0744100:CDS 50.0%
TCGTCCTTTGTGATCTCCTC+AGG - chr5_1:64782360-64782379 None:intergenic 50.0%
CTTCTCTGTTGAGGGACAGT+TGG + chr5_1:64782440-64782459 Msa0744100:CDS 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG + chr5_1:64782548-64782567 Msa0744100:CDS 50.0%
!! GAAGGGTATTGTGGACTCTG+AGG + chr5_1:64782611-64782630 Msa0744100:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG + chr5_1:64782788-64782807 Msa0744100:CDS 50.0%
CATGTCATCACCACTCTTGG+TGG - chr5_1:64782859-64782878 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG - chr5_1:64782862-64782881 None:intergenic 50.0%
TGATGACATGACCAGCCTCA+AGG + chr5_1:64782869-64782888 Msa0744100:CDS 50.0%
GGTAACATAGTCCTTGAGGC+TGG - chr5_1:64782883-64782902 None:intergenic 50.0%
GCCTCAAGGACTATGTTACC+AGG + chr5_1:64782883-64782902 Msa0744100:CDS 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG - chr5_1:64782973-64782992 None:intergenic 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG + chr5_1:64783172-64783191 Msa0744100:CDS 50.0%
GGGTGACAAGGTTGAGAAAG+TGG + chr5_1:64783193-64783212 Msa0744100:CDS 50.0%
GTATGGTTGGACTGCCAACA+TGG + chr5_1:64783265-64783284 Msa0744100:CDS 50.0%
! TCATGAAGGCACAGGCTTTG+AGG + chr5_1:64783294-64783313 Msa0744100:CDS 50.0%
! CATGAAGGCACAGGCTTTGA+GGG + chr5_1:64783295-64783314 Msa0744100:CDS 50.0%
TCCTCCATTATGGGGTTCTC+GGG - chr5_1:64783371-64783390 None:intergenic 50.0%
CTCCTCCATTATGGGGTTCT+CGG - chr5_1:64783372-64783391 None:intergenic 50.0%
TCCTCAGCTCCTCCATTATG+GGG - chr5_1:64783379-64783398 None:intergenic 50.0%
! AGCCCAACACTTTTGGCAAC+AGG + chr5_1:64783495-64783514 Msa0744100:CDS 50.0%
TGATGCTGACATGCCACCAT+TGG + chr5_1:64783571-64783590 Msa0744100:CDS 50.0%
TCAGCATCAGCTTCCTCCAA+TGG - chr5_1:64783590-64783609 None:intergenic 50.0%
GAAGCTGATGCTGATGCAGA+GGG + chr5_1:64783596-64783615 Msa0744100:CDS 50.0%
TGATGCAGAGGGAAGCAAGA+TGG + chr5_1:64783607-64783626 Msa0744100:CDS 50.0%
AGAGGGAAGCAAGATGGAAG+AGG + chr5_1:64783613-64783632 Msa0744100:CDS 50.0%
TTGTTCCGCCATTGCCGATC+TGG - chr5_1:64780640-64780659 None:intergenic 55.0%
TATGTGTGGGAGTCCCAAGC+TGG + chr5_1:64781982-64782001 Msa0744100:CDS 55.0%
CAGTGAATGACCCACCAGCT+TGG - chr5_1:64781999-64782018 None:intergenic 55.0%
GTGGGTCATTCACTGTGACC+AGG + chr5_1:64782004-64782023 Msa0744100:CDS 55.0%
CAACTGGTGAAGCTCTTGGC+AGG + chr5_1:64782031-64782050 Msa0744100:CDS 55.0%
ACTGGTGAAGCTCTTGGCAG+GGG + chr5_1:64782033-64782052 Msa0744100:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG + chr5_1:64782098-64782117 Msa0744100:CDS 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG + chr5_1:64782227-64782246 Msa0744100:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG + chr5_1:64782846-64782865 Msa0744100:CDS 55.0%
CATCACCACTCTTGGTGGAG+TGG - chr5_1:64782854-64782873 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG + chr5_1:64782970-64782989 Msa0744100:CDS 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG + chr5_1:64783181-64783200 Msa0744100:CDS 55.0%
GTTGGACTGCCAACATGGAG+AGG + chr5_1:64783270-64783289 Msa0744100:CDS 55.0%
! GGAGAGGATCATGAAGGCAC+AGG + chr5_1:64783286-64783305 Msa0744100:CDS 55.0%
!! GGCTTTGAGGGATAGCAGCA+TGG + chr5_1:64783307-64783326 Msa0744100:CDS 55.0%
TTGAGGGATAGCAGCATGGC+TGG + chr5_1:64783311-64783330 Msa0744100:CDS 55.0%
CAACCCCGAGAACCCCATAA+TGG + chr5_1:64783364-64783383 Msa0744100:CDS 55.0%
CCTCCATTATGGGGTTCTCG+GGG - chr5_1:64783370-64783389 None:intergenic 55.0%
! ACCCCATAATGGAGGAGCTG+AGG + chr5_1:64783375-64783394 Msa0744100:CDS 55.0%
! GCTGAGGAAACGTGCTGATG+CGG + chr5_1:64783391-64783410 Msa0744100:CDS 55.0%
TGCTGACATGCCACCATTGG+AGG + chr5_1:64783574-64783593 Msa0744100:CDS 55.0%
GCATCAGCTTCCTCCAATGG+TGG - chr5_1:64783587-64783606 None:intergenic 55.0%
GGAAGCTGATGCTGATGCAG+AGG + chr5_1:64783595-64783614 Msa0744100:CDS 55.0%
! GGTGCTACGAGCAAAGAACG+CGG - chr5_1:64783859-64783878 None:intergenic 55.0%
TGTGGGAGTCCCAAGCTGGT+GGG + chr5_1:64781986-64782005 Msa0744100:CDS 60.0%
GGAACGCCGTCTGAAGGACT+TGG + chr5_1:64782104-64782123 Msa0744100:CDS 60.0%
CCCCGAGAACCCCATAATGG+AGG + chr5_1:64783367-64783386 Msa0744100:CDS 60.0%
! GGAAACGTGCTGATGCGGAC+AGG + chr5_1:64783396-64783415 Msa0744100:CDS 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG + chr5_1:64781985-64782004 Msa0744100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64780562 64783948 64780562 ID=Msa0744100;Name=Msa0744100
chr5_1 mRNA 64780562 64783948 64780562 ID=Msa0744100-mRNA-1;Parent=Msa0744100;Name=Msa0744100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|3|305|699
chr5_1 exon 64780562 64780770 64780562 ID=Msa0744100-mRNA-1:exon:19143;Parent=Msa0744100-mRNA-1
chr5_1 exon 64781558 64781699 64781558 ID=Msa0744100-mRNA-1:exon:19144;Parent=Msa0744100-mRNA-1
chr5_1 exon 64781809 64783948 64781809 ID=Msa0744100-mRNA-1:exon:19145;Parent=Msa0744100-mRNA-1
chr5_1 five_prime_UTR 64780562 64780647 64780562 ID=Msa0744100-mRNA-1:five_prime_utr;Parent=Msa0744100-mRNA-1
chr5_1 CDS 64780648 64780770 64780648 ID=Msa0744100-mRNA-1:cds;Parent=Msa0744100-mRNA-1
chr5_1 CDS 64781558 64781699 64781558 ID=Msa0744100-mRNA-1:cds;Parent=Msa0744100-mRNA-1
chr5_1 CDS 64781809 64783643 64781809 ID=Msa0744100-mRNA-1:cds;Parent=Msa0744100-mRNA-1
chr5_1 three_prime_UTR 64783644 64783948 64783644 ID=Msa0744100-mRNA-1:three_prime_utr;Parent=Msa0744100-mRNA-1
Gene Sequence

>Msa0744100

ATGGCGGAACAAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAACACCTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGTTGTTCATTCACATTATTCCTGACAAGACCAACAACACCTTGACTATCATTGATAGTGGAATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCCATAGCTGCTGGTGCTGATGTTAGCATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCCGAGAAGGTTATTGTTACCACCAAGCACAATGATGATGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTCACTGTGACCAGGGATACAACTGGTGAAGCTCTTGGCAGGGGAACTAAAATAACTCTCATCCTCAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGATGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCTGAGGAGATCACAAAGGACGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGACAGTTGGAGTTTAAGGCTGTTCTCTTTGTACCGAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGCTGATGCCTGAGTATCTTAGCTTTGTGAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAAATGCTTCAACAGAACAAGATTCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGCCTCGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGATTACAACAAGTTCTATGAGGCCTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACAAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCCATTGATGAATATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTATCTGACCGTGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAGGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCCGAGAACCCCATAATGGAGGAGCTGAGGAAACGTGCTGATGCGGACAGGAATGACAAATCTGTCAAGGACCTTGTTCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA
Protein sequence

>Msa0744100

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*