AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0825270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825270 MtrunA17_Chr5g0446951 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0825270 MtrunA17_Chr5g0446941 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0825270 MtrunA17_Chr6g0469201 88.160 701 79 3 1 699 1 699 0.0 1186
Msa0825270 MtrunA17_Chr1g0202601 83.429 700 92 3 1 699 6 682 0.0 1110
Msa0825270 MtrunA17_Chr1g0156731 48.867 706 320 8 5 673 78 779 0.0 642
Msa0825270 MtrunA17_Chr5g0447581 45.562 676 345 10 5 667 90 755 0.0 577
Msa0825270 MtrunA17_Chr5g0420861 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825270 AT5G56000.1 90.714 700 63 2 1 699 1 699 0.0 1205
Msa0825270 AT5G56030.1 92.286 700 52 2 1 699 1 699 0.0 1196
Msa0825270 AT5G56010.1 92.000 700 54 2 1 699 1 699 0.0 1194
Msa0825270 AT5G56030.2 88.615 729 52 3 1 699 1 728 0.0 1181
Msa0825270 AT5G52640.1 85.185 702 99 5 1 699 1 700 0.0 1148
Msa0825270 AT4G24190.1 50.356 703 310 8 5 672 77 775 0.0 643
Msa0825270 AT4G24190.2 50.356 703 310 8 5 672 77 775 0.0 642
Msa0825270 AT2G04030.1 47.485 676 329 11 5 668 77 738 0.0 597
Msa0825270 AT3G07770.1 45.495 677 346 10 5 668 95 761 0.0 590
Msa0825270 AT3G07770.3 45.495 677 346 10 5 668 95 761 0.0 590
Msa0825270 AT3G07770.2 45.495 677 346 10 5 668 95 761 0.0 590
Msa0825270 AT2G04030.2 47.033 674 332 11 5 668 77 735 0.0 588

Find 195 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGACAGTTGGAGTTTA+AGG 0.160886 5_3:-65017992 Msa0825270:CDS
AATCTCCTTGTTACTGTAAA+AGG 0.195492 5_3:+65019726 None:intergenic
TTCGCAACGAATATTAATTT+AGG 0.229845 5_3:+65016514 None:intergenic
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5_3:-65016983 Msa0825270:CDS
TTTCCTCAGCTCCTCCATTA+TGG 0.246479 5_3:+65017063 None:intergenic
ACAAGAGACGTTTGCTTTCC+AGG 0.252769 5_3:-65019785 Msa0825270:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5_3:+65018285 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5_3:-65018116 Msa0825270:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5_3:-65018293 Msa0825270:CDS
TTCCTCAGCTCCTCCATTAT+GGG 0.271018 5_3:+65017064 None:intergenic
CTTGATGAGCCCAACACTTT+TGG 0.271765 5_3:-65016953 Msa0825270:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5_3:-65018292 Msa0825270:CDS
ACTATCATTGATAGTGGAAT+TGG 0.289715 5_3:-65018778 Msa0825270:CDS
GTGTTAATTGTGACTATCTT+TGG 0.300881 5_3:-65016640 Msa0825270:three_prime_UTR
CTCCTCCATTATGGGGTTCT+CGG 0.308210 5_3:+65017072 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5_3:+65019804 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5_3:-65018034 Msa0825270:CDS
TCCTCCATTATGGGGTTCTC+GGG 0.353116 5_3:+65017073 None:intergenic
TGAAGTAGTTTCTATTGTTT+AGG 0.357932 5_3:-65016794 Msa0825270:three_prime_UTR
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5_3:-65017193 Msa0825270:CDS
TCATGCTAACTTACCAGCTT+TGG 0.369152 5_3:+65018750 None:intergenic
TCAGGCTTCCTCATCCAAAT+AGG 0.372502 5_3:+65018102 None:intergenic
GACATACAGCTTGATGTTGT+TGG 0.373069 5_3:+65017912 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5_3:-65018601 Msa0825270:CDS
AATGACATTTACTACATTAC+CGG 0.381181 5_3:-65017520 Msa0825270:CDS
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5_3:-65018047 Msa0825270:CDS
ACATACAGCTTGATGTTGTT+GGG 0.394439 5_3:+65017913 None:intergenic
TGTTTGCTCATCGTAAGTTC+TGG 0.395191 5_3:-65016662 Msa0825270:three_prime_UTR
AAGGTGTTGTTGGTCTTGTC+AGG 0.401362 5_3:+65018802 None:intergenic
TCAACAGAACAAGATTCTTA+AGG 0.404319 5_3:-65017776 Msa0825270:CDS
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5_3:-65018220 Msa0825270:CDS
GGTGCTGATGTTAGCATGAT+TGG 0.418135 5_3:-65018564 Msa0825270:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5_3:-65018229 Msa0825270:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5_3:+65017582 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5_3:-65018214 Msa0825270:CDS
CATGAAGGCACAGGCTTTGA+GGG 0.435413 5_3:-65017146 Msa0825270:CDS
ACAAGATTCTTAAGGTCATC+AGG 0.437555 5_3:-65017768 Msa0825270:CDS
CAACCCCGAGAACCCCATAA+TGG 0.440515 5_3:-65017077 Msa0825270:CDS
GTTAGCATGATTGGACAGTT+TGG 0.443805 5_3:-65018555 Msa0825270:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5_3:+65017943 None:intergenic
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5_3:-65017364 Msa0825270:CDS
AATGATAGTCAAGGTGTTGT+TGG 0.456218 5_3:+65018792 None:intergenic
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5_3:-65017464 Msa0825270:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5_3:-65018046 Msa0825270:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5_3:+65018035 None:intergenic
TCGTCCTTTGTGATCTCCTC+AGG 0.466562 5_3:+65018084 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5_3:-65017395 Msa0825270:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.470021 5_3:-65017130 Msa0825270:CDS
GGTGGTAACAATAACCTTCT+CGG 0.473999 5_3:+65018503 None:intergenic
ACCTTGACTATCATTGATAG+TGG 0.474059 5_3:-65018784 Msa0825270:CDS
TCATGAAGGCACAGGCTTTG+AGG 0.476598 5_3:-65017147 Msa0825270:CDS
TATGGCTTCCATGAATTCCT+TGG 0.477216 5_3:+65018593 None:intergenic
AGTGAATGACCCACCAGCTT+GGG 0.479426 5_3:+65018446 None:intergenic
TGAGGACGAGGAAGAGAAGA+AGG 0.480741 5_3:-65018235 Msa0825270:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5_3:+65018852 None:intergenic
AGATCAAAAGGTGCTCTCTT+CGG 0.483306 5_3:+65017955 None:intergenic
CAACTGGTGAAGCTCTTGGC+AGG 0.483720 5_3:-65018410 Msa0825270:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5_3:-65017713 Msa0825270:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5_3:-65018226 Msa0825270:CDS
TGTTAAGCACTTCTCTGTTG+AGG 0.488225 5_3:-65018010 Msa0825270:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5_3:+65017585 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5_3:+65017540 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.489262 5_3:-65018009 Msa0825270:CDS
CAAAGCTTGCTGATTTGCTC+AGG 0.489387 5_3:-65017615 Msa0825270:CDS
AACATCAGCACCAGCAGCTA+TGG 0.489580 5_3:+65018575 None:intergenic
ATTTCTCTTGAAATGTTAAG+TGG 0.491469 5_3:+65017802 None:intergenic
CTTCTCTAAGAACTTGAAGC+TGG 0.492825 5_3:-65017665 Msa0825270:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5_3:-65018139 Msa0825270:CDS
TAGCTTTGTGAAGGGTATTG+TGG 0.493429 5_3:-65017839 Msa0825270:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5_3:-65018337 Msa0825270:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5_3:+65017501 None:intergenic
CTTCTCTGTTGAGGGACAGT+TGG 0.494681 5_3:-65018001 Msa0825270:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5_3:+65017468 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5_3:-65017278 Msa0825270:CDS
GTAGTTTCTATTGTTTAGGA+AGG 0.496454 5_3:-65016790 Msa0825270:three_prime_UTR
AGCTTCACCAGTTGTATCCC+TGG 0.498334 5_3:+65018419 None:intergenic
AGTAGATGAGGAGAAAGAAA+AGG 0.499471 5_3:-65018190 Msa0825270:CDS
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5_3:-65017248 Msa0825270:CDS
TTCATCATCATTGTGCTTGG+TGG 0.500075 5_3:+65018485 None:intergenic
GGAATTGGAATGACCAAAGC+TGG 0.500501 5_3:-65018763 Msa0825270:intron
GATACAACTGGTGAAGCTCT+TGG 0.501895 5_3:-65018414 Msa0825270:CDS
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5_3:-65018618 Msa0825270:CDS
TGCTTACCTTGTTGCCGAGA+AGG 0.502623 5_3:-65018517 Msa0825270:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5_3:-65018225 Msa0825270:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5_3:-65017202 Msa0825270:CDS
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5_3:-65017463 Msa0825270:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5_3:-65017269 Msa0825270:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5_3:+65017469 None:intergenic
GTGGGTCATTCACTGTGACC+AGG 0.512028 5_3:-65018437 Msa0825270:CDS
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5_3:+65017470 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.516506 5_3:-65017758 Msa0825270:CDS
CTTCATGATCCTCTCCATGT+TGG 0.521693 5_3:+65017162 None:intergenic
ATGATTGGACAGTTTGGTGT+TGG 0.524590 5_3:-65018549 Msa0825270:CDS
TGCTGACATGCCACCATTGG+AGG 0.530142 5_3:-65016867 Msa0825270:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5_3:+65016944 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5_3:-65016923 Msa0825270:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5_3:+65016854 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5_3:-65018610 Msa0825270:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5_3:-65018146 Msa0825270:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5_3:+65016943 None:intergenic
CTGTTCATCATCATTGTGCT+TGG 0.544768 5_3:+65018482 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5_3:-65016870 Msa0825270:CDS
TAAGGTTGAGGAAGTAGATG+AGG 0.545318 5_3:-65018202 Msa0825270:CDS
TTCATGGAAGCCATAGCTGC+TGG 0.547466 5_3:-65018585 Msa0825270:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5_3:-65017394 Msa0825270:CDS
TGAGTATCTTAGCTTTGTGA+AGG 0.548429 5_3:-65017848 Msa0825270:CDS
TCCTCAGCTCCTCCATTATG+GGG 0.548965 5_3:+65017065 None:intergenic
ACCAACAGCATATTCATCAA+TGG 0.549314 5_3:+65017414 None:intergenic
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5_3:-65018456 Msa0825270:CDS
GGAGAGGATCATGAAGGCAC+AGG 0.554892 5_3:-65017155 Msa0825270:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5_3:+65017464 None:intergenic
CAGCTTCAAGTTCTTAGAGA+AGG 0.556190 5_3:+65017666 None:intergenic
GGAAACGTGCTGATGCGGAC+AGG 0.560251 5_3:-65017045 Msa0825270:CDS
TAAAATAACTCTCATCCTCA+AGG 0.561419 5_3:-65018382 Msa0825270:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5_3:-65017189 Msa0825270:CDS
CCAGATTTGGTGAACAACCT+AGG 0.564348 5_3:-65018636 Msa0825270:intron
CAGTGAATGACCCACCAGCT+TGG 0.566153 5_3:+65018445 None:intergenic
GGACTATGTTACCAGGATGA+AGG 0.567325 5_3:-65017551 Msa0825270:CDS
GAAAGAGATTTCTGATGATG+AGG 0.568419 5_3:-65018253 Msa0825270:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5_3:-65018343 Msa0825270:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5_3:+65016954 None:intergenic
ATAATGTGAATGAACAACTC+TGG 0.569519 5_3:+65018826 None:intergenic
ACTGTGACCAGGGATACAAC+TGG 0.570046 5_3:-65018426 Msa0825270:CDS
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5_3:-65016828 Msa0825270:CDS
CAATAACCTTCTCGGCAACA+AGG 0.573151 5_3:+65018511 None:intergenic
TTCTCTAAGAACTTGAAGCT+GGG 0.573524 5_3:-65017664 Msa0825270:CDS
TGGGTCATTCACTGTGACCA+GGG 0.573714 5_3:-65018436 Msa0825270:CDS
TTCACAAAGCTAAGATACTC+AGG 0.575042 5_3:+65017850 None:intergenic
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5_3:-65017260 Msa0825270:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5_3:+65017561 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5_3:-65017443 Msa0825270:CDS
ACAACCTAGGTACCATTGCT+AGG 0.579010 5_3:-65018623 Msa0825270:CDS
TCTCAAACAGCAAGAGAACA+AGG 0.580225 5_3:+65017002 None:intergenic
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5_3:+65018869 None:intergenic
CTATTGTTTAGGAAGGTGTG+AGG 0.582863 5_3:-65016783 Msa0825270:three_prime_UTR
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5_3:-65018110 Msa0825270:CDS
ACTGGTGAAGCTCTTGGCAG+GGG 0.584964 5_3:-65018408 Msa0825270:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5_3:+65019767 None:intergenic
AACTGGTGAAGCTCTTGGCA+GGG 0.587596 5_3:-65018409 Msa0825270:CDS
GCTGAGGAAACGTGCTGATG+CGG 0.588607 5_3:-65017050 Msa0825270:CDS
CAGACCTAGCAATGGTACCT+AGG 0.590700 5_3:+65018619 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5_3:+65017590 None:intergenic
GGCTTTGAGGGATAGCAGCA+TGG 0.597369 5_3:-65017134 Msa0825270:CDS
AGATTACAACAAGTTCTATG+AGG 0.599707 5_3:-65017689 Msa0825270:CDS
ATATGCTGTTGGTCAGCTCA+AGG 0.599835 5_3:-65017404 Msa0825270:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5_3:-65017287 Msa0825270:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5_3:-65016845 Msa0825270:CDS
ACCCCATAATGGAGGAGCTG+AGG 0.602360 5_3:-65017066 Msa0825270:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5_3:-65016834 Msa0825270:CDS
GATTTCTGATGATGAGGACG+AGG 0.608743 5_3:-65018247 Msa0825270:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5_3:+65017557 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5_3:-65017363 Msa0825270:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5_3:-65017558 Msa0825270:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5_3:-65017104 Msa0825270:CDS
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5_3:-65018459 Msa0825270:CDS
TCCACTATCAATGATAGTCA+AGG 0.615433 5_3:+65018783 None:intergenic
GCCATTGATGAATATGCTGT+TGG 0.617134 5_3:-65017415 Msa0825270:CDS
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5_3:-65016906 Msa0825270:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5_3:-65017161 Msa0825270:CDS
CCTCCATTATGGGGTTCTCG+GGG 0.620923 5_3:+65017074 None:intergenic
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5_3:-65017341 Msa0825270:CDS
TGAGCAAACAATAGCTACAC+TGG 0.624684 5_3:+65016675 None:intergenic
GGATCAACTTGAGTATCTTG+AGG 0.629396 5_3:-65018358 Msa0825270:CDS
GAGTATCTTAGCTTTGTGAA+GGG 0.631299 5_3:-65017847 Msa0825270:CDS
AGCAAGGAGAATCGACAACA+CGG 0.631988 5_3:+65017215 None:intergenic
AGGTACCACTCCACCAAGAG+TGG 0.636721 5_3:-65017595 Msa0825270:CDS
CAGGAATGACAAATCTGTCA+AGG 0.640894 5_3:-65017026 Msa0825270:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5_3:-65017176 Msa0825270:CDS
ACTCAAGTTGATCCTCCTTG+AGG 0.641638 5_3:+65018367 None:intergenic
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5_3:+65018331 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5_3:-65018455 Msa0825270:CDS
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5_3:+65016857 None:intergenic
CCCCGAGAACCCCATAATGG+AGG 0.653113 5_3:-65017074 Msa0825270:CDS
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5_3:-65017268 Msa0825270:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5_3:-65017572 Msa0825270:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5_3:+65017471 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5_3:-65017171 Msa0825270:CDS
ATTTCAGAAACGAAATAACA+AGG 0.670109 5_3:+65016564 None:intergenic
TATGTTACCAGGATGAAGGA+AGG 0.670222 5_3:-65017547 Msa0825270:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5_3:-65016846 Msa0825270:CDS
ATGATGATGAACAGTATGTG+TGG 0.676362 5_3:-65018473 Msa0825270:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5_3:+65017887 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5_3:+65017199 None:intergenic
GAAGGGTATTGTGGACTCTG+AGG 0.693168 5_3:-65017830 Msa0825270:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5_3:-65017653 Msa0825270:CDS
AATAACTCTCATCCTCAAGG+AGG 0.699652 5_3:-65018379 Msa0825270:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5_3:+65018611 None:intergenic
CAATTTCAAAGAAAAGCTCG+AGG 0.701411 5_3:+65017725 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5_3:-65017881 Msa0825270:CDS
GAAGCCTGAGGAGATCACAA+AGG 0.711808 5_3:-65018088 Msa0825270:CDS
TGATGATGAACAGTATGTGT+GGG 0.717373 5_3:-65018472 Msa0825270:CDS
TATTTGGATGAGGAAGCCTG+AGG 0.739589 5_3:-65018100 Msa0825270:CDS
GGTGCTACGAGCAAAGAACG+CGG 0.760872 5_3:+65016585 None:intergenic
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5_3:-65017275 Msa0825270:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5_3:+65017890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTATTTTATCAATTTTA+GGG - chr5_3:65016836-65016855 Msa0825270:CDS 10.0%
!! TTAAAATTCAATTTCAATTT+GGG + chr5_3:65017102-65017121 None:intergenic 10.0%
!! ATTAAAATTCAATTTCAATT+TGG + chr5_3:65017103-65017122 None:intergenic 10.0%
!!! AAATTGAATTTTAATTAGTT+CGG - chr5_3:65017108-65017127 Msa0825270:CDS 10.0%
!!! TTGTCTTTATTTTTAAATTT+TGG - chr5_3:65019660-65019679 Msa0825270:intron 10.0%
!!! TTTTTTTCTTTTTGTTTCTT+AGG - chr5_3:65016746-65016765 Msa0825270:three_prime_UTR 15.0%
!!! TTTTTTCTTTTTGTTTCTTA+GGG - chr5_3:65016747-65016766 Msa0825270:three_prime_UTR 15.0%
!!! ATGATTTTGATGAATTTTTT+CGG - chr5_3:65016798-65016817 Msa0825270:three_prime_UTR 15.0%
!!! GGTATTATTTTATCAATTTT+AGG - chr5_3:65016835-65016854 Msa0825270:CDS 15.0%
!! ACTTTCATTCATATAATTAA+AGG + chr5_3:65017212-65017231 None:intergenic 15.0%
!!! TAACTCTTTAATTTTTTGAA+TGG - chr5_3:65017251-65017270 Msa0825270:CDS 15.0%
!!! ATTCAATTCTAAAACTAAAA+GGG + chr5_3:65017289-65017308 None:intergenic 15.0%
!!! AATTCAATTCTAAAACTAAA+AGG + chr5_3:65017290-65017309 None:intergenic 15.0%
!! ACTTTCTTTCAAAAAATTAA+AGG + chr5_3:65017322-65017341 None:intergenic 15.0%
!! TATAATTGTTACTAATACTT+TGG - chr5_3:65017386-65017405 Msa0825270:CDS 15.0%
!! TGTTAATTGAATATGTTGTT+AGG - chr5_3:65016863-65016882 Msa0825270:CDS 20.0%
!! GTTAATTGAATATGTTGTTA+GGG - chr5_3:65016864-65016883 Msa0825270:CDS 20.0%
!! TCAACTATGAAACATATATT+CGG + chr5_3:65017053-65017072 None:intergenic 20.0%
!! AAAAATAGATCACAAGATTA+GGG + chr5_3:65017150-65017169 None:intergenic 20.0%
!! AAAAAATAGATCACAAGATT+AGG + chr5_3:65017151-65017170 None:intergenic 20.0%
!!! TTTTTTGAAAGAAAGTTGTT+TGG - chr5_3:65017326-65017345 Msa0825270:CDS 20.0%
!!! TTTTTGAAAGAAAGTTGTTT+GGG - chr5_3:65017327-65017346 Msa0825270:CDS 20.0%
!! TGTTGTTCTGATTATTATAT+TGG - chr5_3:65017473-65017492 Msa0825270:CDS 20.0%
!! GTTGTTCTGATTATTATATT+GGG - chr5_3:65017474-65017493 Msa0825270:CDS 20.0%
!!! TTTTATTAGATGCAATTTTC+TGG - chr5_3:65019695-65019714 Msa0825270:CDS 20.0%
!!! TTTCTGAAATACACTTTTTT+AGG - chr5_3:65019843-65019862 Msa0825270:five_prime_UTR 20.0%
!!! TTCTGAAATACACTTTTTTA+GGG - chr5_3:65019844-65019863 Msa0825270:five_prime_UTR 20.0%
!! TTTTCGGTTATGATTCTTAT+TGG - chr5_3:65016814-65016833 Msa0825270:exon 25.0%
!!! ATGATTTGTTAGTCATGTTT+AGG - chr5_3:65016952-65016971 Msa0825270:CDS 25.0%
!!! GTTTTAGAATTGAATTTGCA+TGG - chr5_3:65017294-65017313 Msa0825270:CDS 25.0%
!! GTTATTGTCAATGTTATTTG+AGG - chr5_3:65017363-65017382 Msa0825270:CDS 25.0%
! TAATGATGATTTAGTTGTTG+TGG - chr5_3:65017443-65017462 Msa0825270:CDS 25.0%
! AATGATGATTTAGTTGTTGT+GGG - chr5_3:65017444-65017463 Msa0825270:CDS 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG - chr5_3:65018231-65018250 Msa0825270:CDS 25.0%
! ATTTCTCTTGAAATGTTAAG+TGG + chr5_3:65018595-65018614 None:intergenic 25.0%
! AATGACATTTACTACATTAC+CGG - chr5_3:65018874-65018893 Msa0825270:CDS 25.0%
! TGAAGTAGTTTCTATTGTTT+AGG - chr5_3:65019600-65019619 Msa0825270:intron 25.0%
! ATTTCAGAAACGAAATAACA+AGG + chr5_3:65019833-65019852 None:intergenic 25.0%
AATCTCCTTGTTACTGTAAA+AGG + chr5_3:65016671-65016690 None:intergenic 30.0%
AAAAGAAAAAAAGAGCGAAG+AGG + chr5_3:65016738-65016757 None:intergenic 30.0%
! TGAATATGTTGTTAGGGTTT+TGG - chr5_3:65016870-65016889 Msa0825270:CDS 30.0%
! GAATATGTTGTTAGGGTTTT+GGG - chr5_3:65016871-65016890 Msa0825270:CDS 30.0%
! TACTGTGTAACATTTTCACT+TGG - chr5_3:65017172-65017191 Msa0825270:CDS 30.0%
!! ATACTTTGGAATATCAGTGT+TGG - chr5_3:65017400-65017419 Msa0825270:CDS 30.0%
!! GAATATCAGTGTTGGATTTT+TGG - chr5_3:65017408-65017427 Msa0825270:CDS 30.0%
ATAATGTGAATGAACAACTC+TGG + chr5_3:65017571-65017590 None:intergenic 30.0%
!! ACTATCATTGATAGTGGAAT+TGG - chr5_3:65017616-65017635 Msa0825270:CDS 30.0%
CTGTATTTATGTTCCAGATT+TGG - chr5_3:65017745-65017764 Msa0825270:CDS 30.0%
TAAAATAACTCTCATCCTCA+AGG - chr5_3:65018012-65018031 Msa0825270:CDS 30.0%
TTAGCTATCCAATTTCTCTT+TGG - chr5_3:65018101-65018120 Msa0825270:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG - chr5_3:65018102-65018121 Msa0825270:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG - chr5_3:65018234-65018253 Msa0825270:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG + chr5_3:65018454-65018473 None:intergenic 30.0%
TCAACAGAACAAGATTCTTA+AGG - chr5_3:65018618-65018637 Msa0825270:CDS 30.0%
AGATTACAACAAGTTCTATG+AGG - chr5_3:65018705-65018724 Msa0825270:intron 30.0%
TGAGGATGAAAAGAAAAAGA+TGG - chr5_3:65019071-65019090 Msa0825270:intron 30.0%
GTAGTTTCTATTGTTTAGGA+AGG - chr5_3:65019604-65019623 Msa0825270:intron 30.0%
GTGTTAATTGTGACTATCTT+TGG - chr5_3:65019754-65019773 Msa0825270:CDS 30.0%
! CAACACCTTTTACAGTAACA+AGG - chr5_3:65016663-65016682 Msa0825270:three_prime_UTR 35.0%
ATATTGGGATGCTGTAATGT+AGG - chr5_3:65017489-65017508 Msa0825270:CDS 35.0%
! TTTGGATAAGATCCGTTTTG+AGG - chr5_3:65017513-65017532 Msa0825270:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG - chr5_3:65017514-65017533 Msa0825270:CDS 35.0%
!! AATGATAGTCAAGGTGTTGT+TGG + chr5_3:65017605-65017624 None:intergenic 35.0%
ACCTTGACTATCATTGATAG+TGG - chr5_3:65017610-65017629 Msa0825270:CDS 35.0%
TCCACTATCAATGATAGTCA+AGG + chr5_3:65017614-65017633 None:intergenic 35.0%
! CTTTTTCCTGAGTCTGTAAT+TGG - chr5_3:65017668-65017687 Msa0825270:CDS 35.0%
CATAAACCAATTACAGACTC+AGG + chr5_3:65017677-65017696 None:intergenic 35.0%
! ATGATGATGAACAGTATGTG+TGG - chr5_3:65017921-65017940 Msa0825270:CDS 35.0%
! TGATGATGAACAGTATGTGT+GGG - chr5_3:65017922-65017941 Msa0825270:CDS 35.0%
TTCTCAACCCAAAGAGAAAT+TGG + chr5_3:65018112-65018131 None:intergenic 35.0%
! GAAAGAGATTTCTGATGATG+AGG - chr5_3:65018141-65018160 Msa0825270:CDS 35.0%
AGTAGATGAGGAGAAAGAAA+AGG - chr5_3:65018204-65018223 Msa0825270:CDS 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG - chr5_3:65018248-65018267 Msa0825270:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG + chr5_3:65018484-65018503 None:intergenic 35.0%
AGTTGTCCATGATGAAAACA+CGG + chr5_3:65018510-65018529 None:intergenic 35.0%
TTCACAAAGCTAAGATACTC+AGG + chr5_3:65018547-65018566 None:intergenic 35.0%
!! TGAGTATCTTAGCTTTGTGA+AGG - chr5_3:65018546-65018565 Msa0825270:CDS 35.0%
!! GAGTATCTTAGCTTTGTGAA+GGG - chr5_3:65018547-65018566 Msa0825270:CDS 35.0%
ACAAGATTCTTAAGGTCATC+AGG - chr5_3:65018626-65018645 Msa0825270:CDS 35.0%
CAATTTCAAAGAAAAGCTCG+AGG + chr5_3:65018672-65018691 None:intergenic 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG - chr5_3:65018681-65018700 Msa0825270:intron 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG - chr5_3:65018730-65018749 Msa0825270:intron 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG + chr5_3:65018759-65018778 None:intergenic 35.0%
GGGATATGAAGTGATTTACA+TGG - chr5_3:65018951-65018970 Msa0825270:intron 35.0%
ACCAACAGCATATTCATCAA+TGG + chr5_3:65018983-65019002 None:intergenic 35.0%
TAGTGTCTGCAACTAAAGAA+GGG - chr5_3:65019031-65019050 Msa0825270:intron 35.0%
GAAAAAGATGGAAGAACAGA+AGG - chr5_3:65019083-65019102 Msa0825270:intron 35.0%
CTCTGCGAAAAAAACCAGAT+CGG - chr5_3:65016576-65016595 Msa0825270:three_prime_UTR 40.0%
GAAAAAAACCAGATCGGCAA+TGG - chr5_3:65016582-65016601 Msa0825270:three_prime_UTR 40.0%
GAAGAGGAAGAAGCTTACAT+CGG + chr5_3:65016722-65016741 None:intergenic 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG + chr5_3:65017545-65017564 None:intergenic 40.0%
TCATGCTAACTTACCAGCTT+TGG + chr5_3:65017647-65017666 None:intergenic 40.0%
TATGGCTTCCATGAATTCCT+TGG + chr5_3:65017804-65017823 None:intergenic 40.0%
GTTAGCATGATTGGACAGTT+TGG - chr5_3:65017839-65017858 Msa0825270:CDS 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG - chr5_3:65017845-65017864 Msa0825270:CDS 40.0%
GGTGGTAACAATAACCTTCT+CGG + chr5_3:65017894-65017913 None:intergenic 40.0%
TTCATCATCATTGTGCTTGG+TGG + chr5_3:65017912-65017931 None:intergenic 40.0%
CTGTTCATCATCATTGTGCT+TGG + chr5_3:65017915-65017934 None:intergenic 40.0%
AATAACTCTCATCCTCAAGG+AGG - chr5_3:65018015-65018034 Msa0825270:CDS 40.0%
GGATCAACTTGAGTATCTTG+AGG - chr5_3:65018036-65018055 Msa0825270:CDS 40.0%
TCTTAACCAAGTCCTTCAGA+CGG + chr5_3:65018066-65018085 None:intergenic 40.0%
TAAGGTTGAGGAAGTAGATG+AGG - chr5_3:65018192-65018211 Msa0825270:CDS 40.0%
GGTGTCTAATGAATGGTCTT+TGG - chr5_3:65018255-65018274 Msa0825270:CDS 40.0%
TGAACAAGCAGAAGCCTATT+TGG - chr5_3:65018278-65018297 Msa0825270:CDS 40.0%
ACAAGAGTCTCACCAATGAT+TGG - chr5_3:65018347-65018366 Msa0825270:CDS 40.0%
CAAGAGTCTCACCAATGATT+GGG - chr5_3:65018348-65018367 Msa0825270:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG + chr5_3:65018362-65018381 None:intergenic 40.0%
!! CAATGATTGGGAAGAGCATT+TGG - chr5_3:65018360-65018379 Msa0825270:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG - chr5_3:65018384-65018403 Msa0825270:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG - chr5_3:65018385-65018404 Msa0825270:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+CGG + chr5_3:65018442-65018461 None:intergenic 40.0%
GACATACAGCTTGATGTTGT+TGG + chr5_3:65018485-65018504 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG - chr5_3:65018513-65018532 Msa0825270:CDS 40.0%
!! TAGCTTTGTGAAGGGTATTG+TGG - chr5_3:65018555-65018574 Msa0825270:CDS 40.0%
TAAGGTCATCAGGAAGAACT+TGG - chr5_3:65018636-65018655 Msa0825270:intron 40.0%
! CAGCTTCAAGTTCTTAGAGA+AGG + chr5_3:65018731-65018750 None:intergenic 40.0%
! CTTCTCTAAGAACTTGAAGC+TGG - chr5_3:65018729-65018748 Msa0825270:intron 40.0%
TATGTTACCAGGATGAAGGA+AGG - chr5_3:65018847-65018866 Msa0825270:CDS 40.0%
AACAGCTTTCTTGCTTTCAC+CGG + chr5_3:65018896-65018915 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG + chr5_3:65018928-65018947 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG - chr5_3:65018931-65018950 Msa0825270:intron 40.0%
GCCATTGATGAATATGCTGT+TGG - chr5_3:65018979-65018998 Msa0825270:intron 40.0%
CTAGTGTCTGCAACTAAAGA+AGG - chr5_3:65019030-65019049 Msa0825270:intron 40.0%
GAAGTTCGACAATCTTTGCA+AGG - chr5_3:65019107-65019126 Msa0825270:intron 40.0%
CAATCTTTGCAAGGTGATCA+AGG - chr5_3:65019116-65019135 Msa0825270:intron 40.0%
TGTTTAGTGACTGGTGAGTA+TGG - chr5_3:65019201-65019220 Msa0825270:intron 40.0%
CATGTCAAGCAAGAAGACAA+TGG - chr5_3:65019290-65019309 Msa0825270:intron 40.0%
CAGGAATGACAAATCTGTCA+AGG - chr5_3:65019368-65019387 Msa0825270:intron 40.0%
TCTCAAACAGCAAGAGAACA+AGG + chr5_3:65019395-65019414 None:intergenic 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG + chr5_3:65019453-65019472 None:intergenic 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG + chr5_3:65019454-65019473 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG - chr5_3:65019611-65019630 Msa0825270:intron 40.0%
TGAGCAAACAATAGCTACAC+TGG + chr5_3:65019722-65019741 None:intergenic 40.0%
TGTTTGCTCATCGTAAGTTC+TGG - chr5_3:65019732-65019751 Msa0825270:CDS 40.0%
AAAAACCAGATCGGCAATGG+CGG - chr5_3:65016585-65016604 Msa0825270:three_prime_UTR 45.0%
ACAAGAGACGTTTGCTTTCC+AGG - chr5_3:65016609-65016628 Msa0825270:three_prime_UTR 45.0%
! GAAGTTGATTGATCTCAGCC+TGG + chr5_3:65016630-65016649 None:intergenic 45.0%
GGATGCTGTAATGTAGGCTT+TGG - chr5_3:65017495-65017514 Msa0825270:CDS 45.0%
!! AAGGTGTTGTTGGTCTTGTC+AGG + chr5_3:65017595-65017614 None:intergenic 45.0%
GGAATTGGAATGACCAAAGC+TGG - chr5_3:65017631-65017650 Msa0825270:CDS 45.0%
CCTAGGTTGTTCACCAAATC+TGG + chr5_3:65017761-65017780 None:intergenic 45.0%
!! CCAGATTTGGTGAACAACCT+AGG - chr5_3:65017758-65017777 Msa0825270:CDS 45.0%
ACAACCTAGGTACCATTGCT+AGG - chr5_3:65017771-65017790 Msa0825270:CDS 45.0%
GTCTGGTACCAAGGAATTCA+TGG - chr5_3:65017793-65017812 Msa0825270:CDS 45.0%
!! GGTGCTGATGTTAGCATGAT+TGG - chr5_3:65017830-65017849 Msa0825270:CDS 45.0%
CAATAACCTTCTCGGCAACA+AGG + chr5_3:65017886-65017905 None:intergenic 45.0%
GATACAACTGGTGAAGCTCT+TGG - chr5_3:65017980-65017999 Msa0825270:CDS 45.0%
!! ACTCAAGTTGATCCTCCTTG+AGG + chr5_3:65018030-65018049 None:intergenic 45.0%
! GATTTCTGATGATGAGGACG+AGG - chr5_3:65018147-65018166 Msa0825270:CDS 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG - chr5_3:65018169-65018188 Msa0825270:CDS 45.0%
AGCAGAAGCCTATTTGGATG+AGG - chr5_3:65018284-65018303 Msa0825270:CDS 45.0%
TCAGGCTTCCTCATCCAAAT+AGG + chr5_3:65018295-65018314 None:intergenic 45.0%
TATTTGGATGAGGAAGCCTG+AGG - chr5_3:65018294-65018313 Msa0825270:CDS 45.0%
TGAGGGACAGTTGGAGTTTA+AGG - chr5_3:65018402-65018421 Msa0825270:CDS 45.0%
TGTCCATGATGAAAACACGG+CGG + chr5_3:65018507-65018526 None:intergenic 45.0%
!! CAAAGCTTGCTGATTTGCTC+AGG - chr5_3:65018779-65018798 Msa0825270:CDS 45.0%
TCCTGGTAACATAGTCCTTG+AGG + chr5_3:65018840-65018859 None:intergenic 45.0%
GGACTATGTTACCAGGATGA+AGG - chr5_3:65018843-65018862 Msa0825270:CDS 45.0%
ATTCTGTCCTTCCTTCATCC+TGG + chr5_3:65018857-65018876 None:intergenic 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG + chr5_3:65018927-65018946 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG + chr5_3:65018929-65018948 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG + chr5_3:65018933-65018952 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG - chr5_3:65018930-65018949 Msa0825270:intron 45.0%
ATATGCTGTTGGTCAGCTCA+AGG - chr5_3:65018990-65019009 Msa0825270:intron 45.0%
TGGTCAGCTCAAGGAATTTG+AGG - chr5_3:65018999-65019018 Msa0825270:intron 45.0%
GGTCAGCTCAAGGAATTTGA+GGG - chr5_3:65019000-65019019 Msa0825270:intron 45.0%
GTTGAAACTTGACGAGAGTG+AGG - chr5_3:65019053-65019072 Msa0825270:intron 45.0%
TCTTTGCAAGGTGATCAAGG+AGG - chr5_3:65019119-65019138 Msa0825270:intron 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG - chr5_3:65019126-65019145 Msa0825270:intron 45.0%
AGCAAGGAGAATCGACAACA+CGG + chr5_3:65019182-65019201 None:intergenic 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG - chr5_3:65019192-65019211 Msa0825270:intron 45.0%
TCACCAGTCACTAAACAGCA+AGG + chr5_3:65019198-65019217 None:intergenic 45.0%
TAGTGACTGGTGAGTATGGT+TGG - chr5_3:65019205-65019224 Msa0825270:intron 45.0%
CTTCATGATCCTCTCCATGT+TGG + chr5_3:65019235-65019254 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG - chr5_3:65019233-65019252 Msa0825270:intron 45.0%
TTCCTCAGCTCCTCCATTAT+GGG + chr5_3:65019333-65019352 None:intergenic 45.0%
TTTCCTCAGCTCCTCCATTA+TGG + chr5_3:65019334-65019353 None:intergenic 45.0%
GAGACTGCTCTTCTTACTTC+TGG - chr5_3:65019411-65019430 Msa0825270:intron 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG + chr5_3:65019443-65019462 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG - chr5_3:65019441-65019460 Msa0825270:intron 45.0%
! CTTTTGGCAACAGGATTCAC+AGG - chr5_3:65019457-65019476 Msa0825270:intron 45.0%
ATTCACAGGATGCTCAAGCT+TGG - chr5_3:65019471-65019490 Msa0825270:intron 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG - chr5_3:65019488-65019507 Msa0825270:intron 45.0%
TGTCGGTCAAGCCCTCAAAA+CGG + chr5_3:65017528-65017547 None:intergenic 50.0%
CAGACCTAGCAATGGTACCT+AGG + chr5_3:65017778-65017797 None:intergenic 50.0%
CTAGGTACCATTGCTAGGTC+TGG - chr5_3:65017776-65017795 Msa0825270:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG + chr5_3:65017786-65017805 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG - chr5_3:65017784-65017803 Msa0825270:CDS 50.0%
TTCATGGAAGCCATAGCTGC+TGG - chr5_3:65017809-65017828 Msa0825270:CDS 50.0%
AACATCAGCACCAGCAGCTA+TGG + chr5_3:65017822-65017841 None:intergenic 50.0%
TGCTTACCTTGTTGCCGAGA+AGG - chr5_3:65017877-65017896 Msa0825270:CDS 50.0%
AGTGAATGACCCACCAGCTT+GGG + chr5_3:65017951-65017970 None:intergenic 50.0%
TGGGTCATTCACTGTGACCA+GGG - chr5_3:65017958-65017977 Msa0825270:CDS 50.0%
ACTGTGACCAGGGATACAAC+TGG - chr5_3:65017968-65017987 Msa0825270:CDS 50.0%
AGCTTCACCAGTTGTATCCC+TGG + chr5_3:65017978-65017997 None:intergenic 50.0%
AACTGGTGAAGCTCTTGGCA+GGG - chr5_3:65017985-65018004 Msa0825270:CDS 50.0%
TGAGGACGAGGAAGAGAAGA+AGG - chr5_3:65018159-65018178 Msa0825270:CDS 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG - chr5_3:65018165-65018184 Msa0825270:CDS 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG - chr5_3:65018168-65018187 Msa0825270:CDS 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG - chr5_3:65018174-65018193 Msa0825270:CDS 50.0%
GAAGCCTGAGGAGATCACAA+AGG - chr5_3:65018306-65018325 Msa0825270:CDS 50.0%
TCGTCCTTTGTGATCTCCTC+AGG + chr5_3:65018313-65018332 None:intergenic 50.0%
CTTCTCTGTTGAGGGACAGT+TGG - chr5_3:65018393-65018412 Msa0825270:CDS 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG - chr5_3:65018501-65018520 Msa0825270:CDS 50.0%
!! GAAGGGTATTGTGGACTCTG+AGG - chr5_3:65018564-65018583 Msa0825270:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG - chr5_3:65018741-65018760 Msa0825270:intron 50.0%
CATGTCATCACCACTCTTGG+TGG + chr5_3:65018812-65018831 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG + chr5_3:65018815-65018834 None:intergenic 50.0%
TGATGACATGACCAGCCTCA+AGG - chr5_3:65018822-65018841 Msa0825270:CDS 50.0%
GGTAACATAGTCCTTGAGGC+TGG + chr5_3:65018836-65018855 None:intergenic 50.0%
GCCTCAAGGACTATGTTACC+AGG - chr5_3:65018836-65018855 Msa0825270:CDS 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG + chr5_3:65018926-65018945 None:intergenic 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG - chr5_3:65019125-65019144 Msa0825270:intron 50.0%
GGGTGACAAGGTTGAGAAAG+TGG - chr5_3:65019146-65019165 Msa0825270:intron 50.0%
GTATGGTTGGACTGCCAACA+TGG - chr5_3:65019218-65019237 Msa0825270:intron 50.0%
! TCATGAAGGCACAGGCTTTG+AGG - chr5_3:65019247-65019266 Msa0825270:intron 50.0%
! CATGAAGGCACAGGCTTTGA+GGG - chr5_3:65019248-65019267 Msa0825270:intron 50.0%
TCCTCCATTATGGGGTTCTC+GGG + chr5_3:65019324-65019343 None:intergenic 50.0%
CTCCTCCATTATGGGGTTCT+CGG + chr5_3:65019325-65019344 None:intergenic 50.0%
TCCTCAGCTCCTCCATTATG+GGG + chr5_3:65019332-65019351 None:intergenic 50.0%
! AGCCCAACACTTTTGGCAAC+AGG - chr5_3:65019448-65019467 Msa0825270:intron 50.0%
TGATGCTGACATGCCACCAT+TGG - chr5_3:65019524-65019543 Msa0825270:intron 50.0%
TCAGCATCAGCTTCCTCCAA+TGG + chr5_3:65019543-65019562 None:intergenic 50.0%
GAAGCTGATGCTGATGCAGA+GGG - chr5_3:65019549-65019568 Msa0825270:intron 50.0%
TGATGCAGAGGGAAGCAAGA+TGG - chr5_3:65019560-65019579 Msa0825270:intron 50.0%
AGAGGGAAGCAAGATGGAAG+AGG - chr5_3:65019566-65019585 Msa0825270:intron 50.0%
TTGTTCCGCCATTGCCGATC+TGG + chr5_3:65016593-65016612 None:intergenic 55.0%
TATGTGTGGGAGTCCCAAGC+TGG - chr5_3:65017935-65017954 Msa0825270:CDS 55.0%
CAGTGAATGACCCACCAGCT+TGG + chr5_3:65017952-65017971 None:intergenic 55.0%
GTGGGTCATTCACTGTGACC+AGG - chr5_3:65017957-65017976 Msa0825270:CDS 55.0%
CAACTGGTGAAGCTCTTGGC+AGG - chr5_3:65017984-65018003 Msa0825270:CDS 55.0%
ACTGGTGAAGCTCTTGGCAG+GGG - chr5_3:65017986-65018005 Msa0825270:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG - chr5_3:65018051-65018070 Msa0825270:CDS 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG - chr5_3:65018180-65018199 Msa0825270:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG - chr5_3:65018799-65018818 Msa0825270:CDS 55.0%
CATCACCACTCTTGGTGGAG+TGG + chr5_3:65018807-65018826 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG - chr5_3:65018923-65018942 Msa0825270:intron 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG - chr5_3:65019134-65019153 Msa0825270:intron 55.0%
GTTGGACTGCCAACATGGAG+AGG - chr5_3:65019223-65019242 Msa0825270:intron 55.0%
! GGAGAGGATCATGAAGGCAC+AGG - chr5_3:65019239-65019258 Msa0825270:intron 55.0%
!! GGCTTTGAGGGATAGCAGCA+TGG - chr5_3:65019260-65019279 Msa0825270:intron 55.0%
TTGAGGGATAGCAGCATGGC+TGG - chr5_3:65019264-65019283 Msa0825270:intron 55.0%
CAACCCCGAGAACCCCATAA+TGG - chr5_3:65019317-65019336 Msa0825270:intron 55.0%
CCTCCATTATGGGGTTCTCG+GGG + chr5_3:65019323-65019342 None:intergenic 55.0%
! ACCCCATAATGGAGGAGCTG+AGG - chr5_3:65019328-65019347 Msa0825270:intron 55.0%
! GCTGAGGAAACGTGCTGATG+CGG - chr5_3:65019344-65019363 Msa0825270:intron 55.0%
TGCTGACATGCCACCATTGG+AGG - chr5_3:65019527-65019546 Msa0825270:intron 55.0%
GCATCAGCTTCCTCCAATGG+TGG + chr5_3:65019540-65019559 None:intergenic 55.0%
GGAAGCTGATGCTGATGCAG+AGG - chr5_3:65019548-65019567 Msa0825270:intron 55.0%
! GGTGCTACGAGCAAAGAACG+CGG + chr5_3:65019812-65019831 None:intergenic 55.0%
TGTGGGAGTCCCAAGCTGGT+GGG - chr5_3:65017939-65017958 Msa0825270:CDS 60.0%
GGAACGCCGTCTGAAGGACT+TGG - chr5_3:65018057-65018076 Msa0825270:CDS 60.0%
CCCCGAGAACCCCATAATGG+AGG - chr5_3:65019320-65019339 Msa0825270:intron 60.0%
! GGAAACGTGCTGATGCGGAC+AGG - chr5_3:65019349-65019368 Msa0825270:intron 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG - chr5_3:65017938-65017957 Msa0825270:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 65016515 65019901 65016515 ID=Msa0825270;Name=Msa0825270
chr5_3 mRNA 65016515 65019901 65016515 ID=Msa0825270-mRNA-1;Parent=Msa0825270;Name=Msa0825270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|1|1|3|305|699
chr5_3 exon 65016515 65018654 65016515 ID=Msa0825270-mRNA-1:exon:20351;Parent=Msa0825270-mRNA-1
chr5_3 exon 65018764 65018905 65018764 ID=Msa0825270-mRNA-1:exon:20350;Parent=Msa0825270-mRNA-1
chr5_3 exon 65019693 65019901 65019693 ID=Msa0825270-mRNA-1:exon:20349;Parent=Msa0825270-mRNA-1
chr5_3 five_prime_UTR 65019816 65019901 65019816 ID=Msa0825270-mRNA-1:five_prime_utr;Parent=Msa0825270-mRNA-1
chr5_3 CDS 65019693 65019815 65019693 ID=Msa0825270-mRNA-1:cds;Parent=Msa0825270-mRNA-1
chr5_3 CDS 65018764 65018905 65018764 ID=Msa0825270-mRNA-1:cds;Parent=Msa0825270-mRNA-1
chr5_3 CDS 65016820 65018654 65016820 ID=Msa0825270-mRNA-1:cds;Parent=Msa0825270-mRNA-1
chr5_3 three_prime_UTR 65016515 65016819 65016515 ID=Msa0825270-mRNA-1:three_prime_utr;Parent=Msa0825270-mRNA-1
Gene Sequence

>Msa0825270

ATGGCGGAACAAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAACACCTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGTTGTTCATTCACATTATTCCTGACAAGACCAACAACACCTTGACTATCATTGATAGTGGAATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCCATAGCTGCTGGTGCTGATGTTAGCATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCCGAGAAGGTTATTGTTACCACCAAGCACAATGATGATGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTCACTGTGACCAGGGATACAACTGGTGAAGCTCTTGGCAGGGGAACTAAAATAACTCTCATCCTCAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGATGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCTGAGGAGATCACAAAGGACGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGACAGTTGGAGTTTAAGGCTGTTCTCTTTGTACCGAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGCTGATGCCTGAGTATCTTAGCTTTGTGAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAAATGCTTCAACAGAACAAGATTCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGCCTCGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGATTACAACAAGTTCTATGAGGCCTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACAAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCCATTGATGAATATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTATCTGACCGTGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAGGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCCGAGAACCCCATAATGGAGGAGCTGAGGAAACGTGCTGATGCGGACAGGAATGACAAATCTGTCAAGGACCTTGTTCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA

Protein sequence

>Msa0825270

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*