AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123510 MtrunA17_Chr1g0184251 77.215 158 31 3 1 155 1 156 1.56e-73 217
Msa0123510 MtrunA17_Chr7g0261051 64.901 151 42 4 1 145 1 146 5.30e-57 175
Msa0123510 MtrunA17_Chr1g0186541 45.455 165 71 3 1 153 1 158 3.49e-37 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123510 AT4G14420.1 51.534 163 64 4 1 154 1 157 3.97e-38 127
Msa0123510 AT1G04340.1 46.203 158 81 2 1 154 1 158 1.75e-34 118
Msa0123510 AT5G43460.2 44.720 161 74 3 1 154 1 153 6.87e-33 114
Msa0123510 AT5G43460.1 44.720 161 74 3 1 154 1 153 6.87e-33 114
Msa0123510 AT3G23180.1 39.316 117 59 4 7 123 24 128 6.65e-16 72.0
Msa0123510 AT3G23180.2 39.316 117 59 4 7 123 24 128 6.65e-16 72.0
Msa0123510 AT3G23190.1 37.931 116 56 2 8 123 25 124 1.64e-13 65.9

Find 58 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTCTCAGATTAAATTAT+TGG 0.150404 1_3:-50676920 Msa0123510:three_prime_UTR
GCCTTCTTTGGTTGTCTTCT+AGG 0.155377 1_3:+50677115 None:intergenic
AGTTGCTCACAGAATGTTTA+TGG 0.162742 1_3:-50676653 Msa0123510:three_prime_UTR
CAGAATGTTTATGGAGTAAT+TGG 0.234474 1_3:-50676644 Msa0123510:intron
TTTAATGCCTTCCATGAAAA+TGG 0.240041 1_3:-50676686 Msa0123510:three_prime_UTR
CAGATTAAACTTGTAATTAC+TGG 0.264664 1_3:-50677536 Msa0123510:CDS
AACTTCAACTGTAATGAAAT+TGG 0.280224 1_3:+50676757 None:intergenic
TGGTTATTCTTGTCTGGATA+TGG 0.281456 1_3:-50679340 Msa0123510:intron
TTCATATTCGGAAGCTCTTT+CGG 0.294913 1_3:-50677479 Msa0123510:CDS
ATGAATGTTAGCACGGCTTT+AGG 0.321521 1_3:-50676863 Msa0123510:three_prime_UTR
GTAAGCAGAGAGAATGAAAA+TGG 0.336820 1_3:+50680062 None:intergenic
GAGTGTCTTGGGTTGTTTCC+CGG 0.342407 1_3:-50677042 Msa0123510:three_prime_UTR
AGATCTCCTTTGGTGACAAC+TGG 0.347501 1_3:+50680296 None:intergenic
CTCTTTCGGAGCTTTGCTGC+TGG 0.368078 1_3:-50677465 Msa0123510:intron
CTCTCTTTAAAGAGTGTCTT+GGG 0.368433 1_3:-50677053 Msa0123510:three_prime_UTR
AGCTGCTGGTTATTCTTGTC+TGG 0.373652 1_3:-50679346 Msa0123510:CDS
ATGGCTTTCTCTTCCTTTCT+CGG 0.374329 1_3:-50680102 Msa0123510:CDS
GCTATTGCTCTGAAGGGCCT+TGG 0.375035 1_3:-50677512 Msa0123510:CDS
TGAAAGCTCGAGATCTCCTT+TGG 0.385683 1_3:+50680286 None:intergenic
ATTGCTCTGAAGGGCCTTGG+AGG 0.394581 1_3:-50677509 Msa0123510:CDS
GAACGGATACAATGAAGAAC+CGG 0.416490 1_3:+50677023 None:intergenic
CTTTGGTTGTCTTCTAGGAA+TGG 0.422045 1_3:+50677120 None:intergenic
CTAAGAAGAAGAGGAAATCT+AGG 0.425677 1_3:+50680146 None:intergenic
CATTTCACTTAATTAGACTT+TGG 0.431464 1_3:-50676732 Msa0123510:three_prime_UTR
CAAAGTCTAATTAAGTGAAA+TGG 0.452918 1_3:+50676733 None:intergenic
TTTCAAGTGGTGAAAACAAA+AGG 0.457127 1_3:-50676813 Msa0123510:three_prime_UTR
TTTCGACTTGGTATACTCTC+TGG 0.460788 1_3:-50676986 Msa0123510:three_prime_UTR
TTGCTCTGAAGGGCCTTGGA+GGG 0.470152 1_3:-50677508 Msa0123510:CDS
TGCTCTGAAGGGCCTTGGAG+GGG 0.472119 1_3:-50677507 Msa0123510:CDS
GAAAGAGAGAAAGAAGAGAA+AGG 0.474091 1_3:+50680214 None:intergenic
AGATTAAACTTGTAATTACT+GGG 0.475430 1_3:-50677535 Msa0123510:CDS
CCTCTCTTTAAAGAGTGTCT+TGG 0.480914 1_3:-50677054 Msa0123510:three_prime_UTR
TACTGGGGCTATTGCTCTGA+AGG 0.491768 1_3:-50677519 Msa0123510:CDS
CGATCATCCAGGTTTCGACT+TGG 0.499500 1_3:-50676998 Msa0123510:three_prime_UTR
TAAACATTCTGTGAGCAACT+TGG 0.505006 1_3:+50676656 None:intergenic
TATCCGTTCTTCGATCATCC+AGG 0.510967 1_3:-50677009 Msa0123510:three_prime_UTR
GAAGAGAACTCTTCCGAGAA+AGG 0.515382 1_3:+50680089 None:intergenic
TCCTAGAAGACAACCAAAGA+AGG 0.517286 1_3:-50677116 Msa0123510:CDS
GAGTATACCAAGTCGAAACC+TGG 0.519243 1_3:+50676991 None:intergenic
TCTTTGTTGCTAAGAAGAAG+AGG 0.535447 1_3:+50680137 None:intergenic
TCTTCTTCTTAGCAACAAAG+AGG 0.548813 1_3:-50680135 Msa0123510:five_prime_UTR
CTTAATTAGACTTTGGCCCA+AGG 0.550656 1_3:-50676725 Msa0123510:three_prime_UTR
TGCTAAACTTGTGTTTCAAG+TGG 0.565849 1_3:-50676826 Msa0123510:three_prime_UTR
GATCTCCTTTGGTGACAACT+GGG 0.578357 1_3:+50680297 None:intergenic
AAAGTAAAGAGGGATGATGA+TGG 0.592777 1_3:+50680255 None:intergenic
TAAGAAGAAGAGGAAATCTA+GGG 0.602304 1_3:+50680147 None:intergenic
CCAATAATTTAATCTGAGAG+TGG 0.604044 1_3:+50676920 None:intergenic
TGGTGTGTTAAAATATAGAG+TGG 0.607760 1_3:-50676590 Msa0123510:three_prime_UTR
ACTGGGGCTATTGCTCTGAA+GGG 0.616718 1_3:-50677518 Msa0123510:CDS
TCAATACAGAAGAAAATGCA+AGG 0.619143 1_3:+50679388 None:intergenic
AGATGCCCAGTTGTCACCAA+AGG 0.626337 1_3:-50680302 Msa0123510:five_prime_UTR
CCAAGACACTCTTTAAAGAG+AGG 0.648321 1_3:+50677054 None:intergenic
ATATGAAAAGAACCCCTCCA+AGG 0.650548 1_3:+50677495 None:intergenic
TCTGAAGTTTAAGAACGCAA+AGG 0.659301 1_3:+50676783 None:intergenic
AACGGATACAATGAAGAACC+GGG 0.660077 1_3:+50677024 None:intergenic
AAACCTGGATGATCGAAGAA+CGG 0.662085 1_3:+50677006 None:intergenic
GATTAAACTTGTAATTACTG+GGG 0.669590 1_3:-50677534 Msa0123510:CDS
ACAAAGAGGAACAACAACAA+TGG 0.673331 1_3:-50680121 Msa0123510:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAGGAAATTTAAA+CGG + chr1_3:50676827-50676846 None:intergenic 10.0%
!!! ATATTTTTTGAAAGTAAAGA+GGG + chr1_3:50676580-50676599 None:intergenic 15.0%
!!! AATATTTTTTGAAAGTAAAG+AGG + chr1_3:50676581-50676600 None:intergenic 15.0%
!!! TTTATGGTATTGAATTTTAT+AGG - chr1_3:50677370-50677389 Msa0123510:intron 15.0%
!! CTATTCATATTATTAAACAA+CGG - chr1_3:50677580-50677599 Msa0123510:intron 15.0%
!! TATTCATATTATTAAACAAC+GGG - chr1_3:50677581-50677600 Msa0123510:intron 15.0%
!! TGAACAATTATAATATCAAA+TGG + chr1_3:50678508-50678527 None:intergenic 15.0%
!!! ATCTAATATGTTTTTGTTTT+TGG + chr1_3:50679734-50679753 None:intergenic 15.0%
!! CAAATAGAAATCAATAAAGA+AGG + chr1_3:50676802-50676821 None:intergenic 20.0%
!! TCTAAACCTTAAAAACATAA+CGG - chr1_3:50676988-50677007 Msa0123510:three_prime_UTR 20.0%
!!! TGCTTTCGTTTAATTTTTTA+TGG - chr1_3:50677354-50677373 Msa0123510:CDS 20.0%
!! ATTGACTATATGGTTATTAT+CGG - chr1_3:50677525-50677544 Msa0123510:CDS 20.0%
!! ACAATTTACAGTATATTGTT+AGG + chr1_3:50677925-50677944 None:intergenic 20.0%
!!! AAGTTTTCAATCACTTAAAA+TGG + chr1_3:50678114-50678133 None:intergenic 20.0%
!! ATGCTTCTTATATAAAAGAA+TGG + chr1_3:50678193-50678212 None:intergenic 20.0%
!! ATTCAGTAAGAATTAAAACA+TGG + chr1_3:50678332-50678351 None:intergenic 20.0%
!! TTCACTAAAGCATAAAAATA+GGG + chr1_3:50678575-50678594 None:intergenic 20.0%
!! CTATATAGATATAACGAATT+TGG - chr1_3:50678625-50678644 Msa0123510:intron 20.0%
!!! TAATTTGTGATGAAATTGTA+TGG + chr1_3:50678970-50678989 None:intergenic 20.0%
!! TTAAGTTAAATTGAAAAGAC+CGG - chr1_3:50679073-50679092 Msa0123510:intron 20.0%
!! AATGCAAAAAAGTTAACAAA+TGG + chr1_3:50679121-50679140 None:intergenic 20.0%
!! ATAGAAAATAATGAGCAAAA+GGG + chr1_3:50679233-50679252 None:intergenic 20.0%
!! AGATTAAACTTGTAATTACT+GGG - chr1_3:50679287-50679306 Msa0123510:intron 20.0%
!! TTGTAAAAATCATAACGAAT+TGG + chr1_3:50679492-50679511 None:intergenic 20.0%
! TAGAAATCAATAAAGAAGGA+AGG + chr1_3:50676798-50676817 None:intergenic 25.0%
!!! GTTTTTTTTCCCTATAGATT+TGG - chr1_3:50676894-50676913 Msa0123510:three_prime_UTR 25.0%
! TTTCAACAACCAAATCTATA+GGG + chr1_3:50676906-50676925 None:intergenic 25.0%
! ATTTCAACAACCAAATCTAT+AGG + chr1_3:50676907-50676926 None:intergenic 25.0%
!!! AGTAAGAACATAACTTGTTA+AGG + chr1_3:50677023-50677042 None:intergenic 25.0%
! TAAACATAGTGTACTACAAT+TGG + chr1_3:50677800-50677819 None:intergenic 25.0%
! AAATATTGAATGTGATGTAG+GGG + chr1_3:50677852-50677871 None:intergenic 25.0%
! GAAATATTGAATGTGATGTA+GGG + chr1_3:50677853-50677872 None:intergenic 25.0%
! AGAAATATTGAATGTGATGT+AGG + chr1_3:50677854-50677873 None:intergenic 25.0%
! TATTGTTAGGAAATAGCTTA+TGG + chr1_3:50677912-50677931 None:intergenic 25.0%
! AAACATGCAATAACTACTTA+TGG - chr1_3:50677978-50677997 Msa0123510:intron 25.0%
! CTAATTATGGAAACAAAAGT+AGG - chr1_3:50678028-50678047 Msa0123510:intron 25.0%
! GTAGGTAGTATTTAATGAAA+TGG - chr1_3:50678046-50678065 Msa0123510:intron 25.0%
! AATGGAAAACACTGTATATA+TGG - chr1_3:50678064-50678083 Msa0123510:intron 25.0%
! AACAATAGAAAAAGTTTACC+AGG + chr1_3:50678224-50678243 None:intergenic 25.0%
! TAATAGCACATTACATAGAA+CGG + chr1_3:50678296-50678315 None:intergenic 25.0%
! TTATTTAATAATCCTGACAG+CGG - chr1_3:50678536-50678555 Msa0123510:intron 25.0%
! TCACTAAAGCATAAAAATAG+GGG + chr1_3:50678574-50678593 None:intergenic 25.0%
! CTTCACTAAAGCATAAAAAT+AGG + chr1_3:50678576-50678595 None:intergenic 25.0%
! TATGGCACAAATATTTATTG+TGG + chr1_3:50678952-50678971 None:intergenic 25.0%
!! TTATTATTCTTTTCCGAACA+AGG + chr1_3:50679042-50679061 None:intergenic 25.0%
! TTGTTCGGAAAAGAATAATA+AGG - chr1_3:50679041-50679060 Msa0123510:intron 25.0%
!!! TTTCATTTTTTATGCCAGAT+CGG + chr1_3:50679166-50679185 None:intergenic 25.0%
! CATAGAAAATAATGAGCAAA+AGG + chr1_3:50679234-50679253 None:intergenic 25.0%
! ACATCACATCAGTTATATTA+GGG + chr1_3:50679265-50679284 None:intergenic 25.0%
! CAGATTAAACTTGTAATTAC+TGG - chr1_3:50679286-50679305 Msa0123510:intron 25.0%
! GATTAAACTTGTAATTACTG+GGG - chr1_3:50679288-50679307 Msa0123510:intron 25.0%
!! TTTTTACAATTATGACAACG+AGG - chr1_3:50679503-50679522 Msa0123510:intron 25.0%
!! ACTTTTCATCAAATTTACAC+AGG - chr1_3:50679542-50679561 Msa0123510:intron 25.0%
!! TTTTTGTATGAATGTTAGCA+CGG - chr1_3:50679952-50679971 Msa0123510:intron 25.0%
! AACTTCAACTGTAATGAAAT+TGG + chr1_3:50680068-50680087 None:intergenic 25.0%
! CAAAGTCTAATTAAGTGAAA+TGG + chr1_3:50680092-50680111 None:intergenic 25.0%
! CATTTCACTTAATTAGACTT+TGG - chr1_3:50680090-50680109 Msa0123510:CDS 25.0%
TAAGAAGAAGAGGAAATCTA+GGG + chr1_3:50676678-50676697 None:intergenic 30.0%
!! TTGGATCCGTTATGTTTTTA+AGG + chr1_3:50676997-50677016 None:intergenic 30.0%
!! ACATAACTTGTTAAGGTTGT+TGG + chr1_3:50677016-50677035 None:intergenic 30.0%
TCTTACTCAGTTAAAGTGTA+AGG - chr1_3:50677036-50677055 Msa0123510:three_prime_UTR 30.0%
! GCTTTACTCTAGTTTCAATT+GGG - chr1_3:50677218-50677237 Msa0123510:intron 30.0%
!!! GCTTTTTTCTATCGTAAACT+CGG + chr1_3:50677298-50677317 None:intergenic 30.0%
! AACTGTTGCAAATCTTTTGT+AGG - chr1_3:50677403-50677422 Msa0123510:intron 30.0%
TCAATACAGAAGAAAATGCA+AGG + chr1_3:50677437-50677456 None:intergenic 30.0%
!! AATAATTTTGCTATAGCTGC+TGG - chr1_3:50677462-50677481 Msa0123510:intron 30.0%
!! ATTGTGCATGAATGTTTTTG+AGG - chr1_3:50677657-50677676 Msa0123510:intron 30.0%
TTGCATGAATTGTAAATGCA+TGG - chr1_3:50677693-50677712 Msa0123510:intron 30.0%
TTGTAAATGCATGGATATGA+TGG - chr1_3:50677702-50677721 Msa0123510:intron 30.0%
!! AACTTTGTTATTAGGAACTG+AGG + chr1_3:50677738-50677757 None:intergenic 30.0%
TCCTAATAACAAAGTTGCTT+TGG - chr1_3:50677742-50677761 Msa0123510:intron 30.0%
!! ACCAAAGCAACTTTGTTATT+AGG + chr1_3:50677746-50677765 None:intergenic 30.0%
!! CAATATTTCTAGCAGTCTAT+TGG - chr1_3:50677864-50677883 Msa0123510:intron 30.0%
TCCATTCAGAACACTAATTA+TGG - chr1_3:50678015-50678034 Msa0123510:intron 30.0%
! TCCATAATTAGTGTTCTGAA+TGG + chr1_3:50678019-50678038 None:intergenic 30.0%
!! CTATTGTTGAATTTTTGAGC+TGG - chr1_3:50678236-50678255 Msa0123510:intron 30.0%
TAAGAATTAAAACATGGCCA+AGG + chr1_3:50678326-50678345 None:intergenic 30.0%
GCTGTCAGGATTATTAAATA+AGG + chr1_3:50678537-50678556 None:intergenic 30.0%
! ATATAACGAATTTGGAGTTG+AGG - chr1_3:50678633-50678652 Msa0123510:intron 30.0%
! TATAACGAATTTGGAGTTGA+GGG - chr1_3:50678634-50678653 Msa0123510:intron 30.0%
AGCTCTTGTACTTTATTGAA+GGG + chr1_3:50679016-50679035 None:intergenic 30.0%
GGAAAAGAATAATAAGGACA+AGG - chr1_3:50679047-50679066 Msa0123510:intron 30.0%
AAAGAATAATAAGGACAAGG+TGG - chr1_3:50679050-50679069 Msa0123510:intron 30.0%
CACATCACATCAGTTATATT+AGG + chr1_3:50679266-50679285 None:intergenic 30.0%
TCAATAAGCAATTGCAACAA+TGG + chr1_3:50679617-50679636 None:intergenic 30.0%
!!! GAGCTTTGTTGTTTTTCATT+GGG - chr1_3:50679669-50679688 Msa0123510:intron 30.0%
CCAATAATTTAATCTGAGAG+TGG + chr1_3:50679905-50679924 None:intergenic 30.0%
CCACTCTCAGATTAAATTAT+TGG - chr1_3:50679902-50679921 Msa0123510:intron 30.0%
! TTTCAAGTGGTGAAAACAAA+AGG - chr1_3:50680009-50680028 Msa0123510:intron 30.0%
CAGAGAAAAAAAAAAGCCTT+GGG + chr1_3:50680116-50680135 None:intergenic 30.0%
ACAGAGAAAAAAAAAAGCCT+TGG + chr1_3:50680117-50680136 None:intergenic 30.0%
TTTAATGCCTTCCATGAAAA+TGG - chr1_3:50680136-50680155 Msa0123510:five_prime_UTR 30.0%
CAGAATGTTTATGGAGTAAT+TGG - chr1_3:50680178-50680197 Msa0123510:five_prime_UTR 30.0%
CAGAATGTTTATGGAGTAAT+TGG - chr1_3:50680178-50680197 Msa0123510:five_prime_UTR 30.0%
TGGTGTGTTAAAATATAGAG+TGG - chr1_3:50680232-50680251 Msa0123510:five_prime_UTR 30.0%
AAAGTAAAGAGGGATGATGA+TGG + chr1_3:50676570-50676589 None:intergenic 35.0%
GAAAGAGAGAAAGAAGAGAA+AGG + chr1_3:50676611-50676630 None:intergenic 35.0%
CTAAGAAGAAGAGGAAATCT+AGG + chr1_3:50676679-50676698 None:intergenic 35.0%
TCTTTGTTGCTAAGAAGAAG+AGG + chr1_3:50676688-50676707 None:intergenic 35.0%
TCTTCTTCTTAGCAACAAAG+AGG - chr1_3:50676687-50676706 Msa0123510:three_prime_UTR 35.0%
ACAAAGAGGAACAACAACAA+TGG - chr1_3:50676701-50676720 Msa0123510:three_prime_UTR 35.0%
GTAAGCAGAGAGAATGAAAA+TGG + chr1_3:50676763-50676782 None:intergenic 35.0%
! TCAAACGATTGATTTCGTTG+TGG - chr1_3:50677110-50677129 Msa0123510:CDS 35.0%
! CAAACGATTGATTTCGTTGT+GGG - chr1_3:50677111-50677130 Msa0123510:CDS 35.0%
! AACTAGAGTAAAGCCTTGTA+TGG + chr1_3:50677212-50677231 None:intergenic 35.0%
! GGCTTTACTCTAGTTTCAAT+TGG - chr1_3:50677217-50677236 Msa0123510:intron 35.0%
!!! AGCGATTAAGTTGCTTTTCT+AGG - chr1_3:50677318-50677337 Msa0123510:CDS 35.0%
TGGTTATTCTTGTCTGGATA+TGG - chr1_3:50677482-50677501 Msa0123510:CDS 35.0%
! GTTGGATTGGATTGACTATA+TGG - chr1_3:50677515-50677534 Msa0123510:CDS 35.0%
AACGGGTAACATTGAATTCA+GGG - chr1_3:50677598-50677617 Msa0123510:intron 35.0%
! ACTACAATTGGTTCATTGTG+CGG + chr1_3:50677788-50677807 None:intergenic 35.0%
TGTTTCTTAACCAGTGCATT+TGG - chr1_3:50678151-50678170 Msa0123510:intron 35.0%
TAATAGATGTCCAAATGCAC+TGG + chr1_3:50678164-50678183 None:intergenic 35.0%
!! TGTTGAATTTTTGAGCTGGA+AGG - chr1_3:50678240-50678259 Msa0123510:intron 35.0%
! TGTGCTATTATACATTGCCT+TGG - chr1_3:50678306-50678325 Msa0123510:intron 35.0%
! ACTTTTGCAGACACAGATAA+TGG + chr1_3:50678425-50678444 None:intergenic 35.0%
TAGCATTGCACTTTATAAGC+TGG - chr1_3:50678454-50678473 Msa0123510:intron 35.0%
! ATAACGAATTTGGAGTTGAG+GGG - chr1_3:50678635-50678654 Msa0123510:intron 35.0%
AAAAACATGATCTGTCCTTC+AGG - chr1_3:50678887-50678906 Msa0123510:intron 35.0%
CAGCTCTTGTACTTTATTGA+AGG + chr1_3:50679017-50679036 None:intergenic 35.0%
ATTATGCTAAATTGCCGATC+TGG - chr1_3:50679149-50679168 Msa0123510:intron 35.0%
GAAAATAATGAGCAAAAGGG+AGG + chr1_3:50679230-50679249 None:intergenic 35.0%
TCAGTTATATTAGGGAACAC+TGG + chr1_3:50679257-50679276 None:intergenic 35.0%
TTCATATTCGGAAGCTCTTT+CGG - chr1_3:50679343-50679362 Msa0123510:CDS 35.0%
! TGGTTTGTCAGATTCTCTAT+TGG - chr1_3:50679377-50679396 Msa0123510:CDS 35.0%
CTGAGCAAATGAGATGAATA+TGG + chr1_3:50679406-50679425 None:intergenic 35.0%
!!! GGAGCTTTGTTGTTTTTCAT+TGG - chr1_3:50679668-50679687 Msa0123510:intron 35.0%
!!! TTTGTTTTTGGAGCCTTCTT+TGG + chr1_3:50679722-50679741 None:intergenic 35.0%
!! CTCTCTTTAAAGAGTGTCTT+GGG - chr1_3:50679769-50679788 Msa0123510:intron 35.0%
TGCTAAACTTGTGTTTCAAG+TGG - chr1_3:50679996-50680015 Msa0123510:intron 35.0%
! TCTGAAGTTTAAGAACGCAA+AGG + chr1_3:50680042-50680061 None:intergenic 35.0%
TAAACATTCTGTGAGCAACT+TGG + chr1_3:50680169-50680188 None:intergenic 35.0%
AGTTGCTCACAGAATGTTTA+TGG - chr1_3:50680169-50680188 Msa0123510:five_prime_UTR 35.0%
TGTTGCTCACAGAATGTTTA+TGG - chr1_3:50680203-50680222 Msa0123510:five_prime_UTR 35.0%
ATGGCTTTCTCTTCCTTTCT+CGG - chr1_3:50676720-50676739 Msa0123510:three_prime_UTR 40.0%
AGAAGGAAGGAACTAACTCT+TGG + chr1_3:50676785-50676804 None:intergenic 40.0%
TATGCTCCTCTATAGGTATG+AGG - chr1_3:50677159-50677178 Msa0123510:CDS 40.0%
ATGGAACCTCATACCTATAG+AGG + chr1_3:50677168-50677187 None:intergenic 40.0%
! AGGATTAATCCCGGATTAGA+TGG - chr1_3:50677257-50677276 Msa0123510:intron 40.0%
TGCTCAAGTACCATCTAATC+CGG + chr1_3:50677270-50677289 None:intergenic 40.0%
TCTTGTCTGGATATGGTATG+TGG - chr1_3:50677489-50677508 Msa0123510:CDS 40.0%
! TATCGGCTAACATGTTAGCT+TGG - chr1_3:50677542-50677561 Msa0123510:intron 40.0%
CAACGGGTAACATTGAATTC+AGG - chr1_3:50677597-50677616 Msa0123510:intron 40.0%
ACGGGTAACATTGAATTCAG+GGG - chr1_3:50677599-50677618 Msa0123510:intron 40.0%
!! GTGCATGAATGTTTTTGAGG+AGG - chr1_3:50677660-50677679 Msa0123510:intron 40.0%
ATTAGGAACTGAGGAGTTTG+TGG + chr1_3:50677729-50677748 None:intergenic 40.0%
ATTGAATGTGATGTAGGGGA+AGG + chr1_3:50677848-50677867 None:intergenic 40.0%
! TAAGAAGCATGATGTTAGCC+TGG - chr1_3:50678203-50678222 Msa0123510:intron 40.0%
GGAAGGCTTATGTCATTATG+TGG - chr1_3:50678257-50678276 Msa0123510:intron 40.0%
CACATTACATAGAACGGATG+AGG + chr1_3:50678290-50678309 None:intergenic 40.0%
! TAACGAATTTGGAGTTGAGG+GGG - chr1_3:50678636-50678655 Msa0123510:intron 40.0%
TGTGCAAAGGAATCAAGCTT+TGG + chr1_3:50678685-50678704 None:intergenic 40.0%
! AGAATGGATTCGATGTGCAA+AGG + chr1_3:50678698-50678717 None:intergenic 40.0%
CATCGAATCCATTCTCAAGT+TGG - chr1_3:50678703-50678722 Msa0123510:intron 40.0%
GTTGAAAGCCAACTTGAGAA+TGG + chr1_3:50678714-50678733 None:intergenic 40.0%
GAGAGACTAACATCAATCTC+TGG + chr1_3:50678739-50678758 None:intergenic 40.0%
ACTAATCCAGTGTTACCTGA+AGG + chr1_3:50678905-50678924 None:intergenic 40.0%
AATGGACATGCAATATCCAC+TGG + chr1_3:50679103-50679122 None:intergenic 40.0%
ATATGAAAAGAACCCCTCCA+AGG + chr1_3:50679330-50679349 None:intergenic 40.0%
! GGAGGGGTTCTTTTCATATT+CGG - chr1_3:50679331-50679350 Msa0123510:intron 40.0%
ATATCACTCCTTGCAGAACA+TGG - chr1_3:50679637-50679656 Msa0123510:intron 40.0%
AAAAAGAGCCATGTTCTGCA+AGG + chr1_3:50679648-50679667 None:intergenic 40.0%
! TTGCAGAACATGGCTCTTTT+TGG - chr1_3:50679647-50679666 Msa0123510:intron 40.0%
! CTTTGGTTGTCTTCTAGGAA+TGG + chr1_3:50679705-50679724 None:intergenic 40.0%
TCCTAGAAGACAACCAAAGA+AGG - chr1_3:50679706-50679725 Msa0123510:intron 40.0%
! CCAAGACACTCTTTAAAGAG+AGG + chr1_3:50679771-50679790 None:intergenic 40.0%
!! CCTCTCTTTAAAGAGTGTCT+TGG - chr1_3:50679768-50679787 Msa0123510:intron 40.0%
AACGGATACAATGAAGAACC+GGG + chr1_3:50679801-50679820 None:intergenic 40.0%
GAACGGATACAATGAAGAAC+CGG + chr1_3:50679802-50679821 None:intergenic 40.0%
AAACCTGGATGATCGAAGAA+CGG + chr1_3:50679819-50679838 None:intergenic 40.0%
!! TTTCGACTTGGTATACTCTC+TGG - chr1_3:50679836-50679855 Msa0123510:intron 40.0%
ATGAATGTTAGCACGGCTTT+AGG - chr1_3:50679959-50679978 Msa0123510:intron 40.0%
CTTAATTAGACTTTGGCCCA+AGG - chr1_3:50680097-50680116 Msa0123510:CDS 40.0%
!! AAAGCAGCCATTTTCATGGA+AGG + chr1_3:50680146-50680165 None:intergenic 40.0%
!! TTGGAAAGCAGCCATTTTCA+TGG + chr1_3:50680150-50680169 None:intergenic 40.0%
! GATCTCCTTTGGTGACAACT+GGG + chr1_3:50676528-50676547 None:intergenic 45.0%
! AGATCTCCTTTGGTGACAAC+TGG + chr1_3:50676529-50676548 None:intergenic 45.0%
TGAAAGCTCGAGATCTCCTT+TGG + chr1_3:50676539-50676558 None:intergenic 45.0%
GAAGAGAACTCTTCCGAGAA+AGG + chr1_3:50676736-50676755 None:intergenic 45.0%
ATATCCCTAGTCTACACCAC+CGG + chr1_3:50677142-50677161 None:intergenic 45.0%
CTAGGGATATGCTCCTCTAT+AGG - chr1_3:50677152-50677171 Msa0123510:CDS 45.0%
GTTCCATTCCTCCGTGTATT+GGG - chr1_3:50677181-50677200 Msa0123510:intron 45.0%
! GTATGGACTGACCCAATACA+CGG + chr1_3:50677195-50677214 None:intergenic 45.0%
GTATTGGGTCAGTCCATACA+AGG - chr1_3:50677196-50677215 Msa0123510:intron 45.0%
GCTCAAGTACCATCTAATCC+GGG + chr1_3:50677269-50677288 None:intergenic 45.0%
GGATTAGATGGTACTTGAGC+AGG - chr1_3:50677269-50677288 Msa0123510:intron 45.0%
! AGCTGCTGGTTATTCTTGTC+TGG - chr1_3:50677476-50677495 Msa0123510:CDS 45.0%
GGATATGGTATGTGGTTCGT+TGG - chr1_3:50677497-50677516 Msa0123510:CDS 45.0%
TGGTATGTGGTTCGTTGGAT+TGG - chr1_3:50677502-50677521 Msa0123510:CDS 45.0%
GGTAACATTGAATTCAGGGG+TGG - chr1_3:50677602-50677621 Msa0123510:intron 45.0%
TGCGGTGATTTAGTGTTAGC+GGG + chr1_3:50677770-50677789 None:intergenic 45.0%
GTGCGGTGATTTAGTGTTAG+CGG + chr1_3:50677771-50677790 None:intergenic 45.0%
GTCTATTGGTCAAACCACCT+TGG - chr1_3:50677878-50677897 Msa0123510:intron 45.0%
! AACGAATTTGGAGTTGAGGG+GGG - chr1_3:50678637-50678656 Msa0123510:intron 45.0%
ATCTGTCCTTCAGGTAACAC+TGG - chr1_3:50678896-50678915 Msa0123510:intron 45.0%
! TACAAGAGCTGTGCCTTGTT+CGG - chr1_3:50679026-50679045 Msa0123510:intron 45.0%
TGCAATATCCACTGGCATAC+CGG + chr1_3:50679095-50679114 None:intergenic 45.0%
GCCTTCTTTGGTTGTCTTCT+AGG + chr1_3:50679710-50679729 None:intergenic 45.0%
TATCCGTTCTTCGATCATCC+AGG - chr1_3:50679813-50679832 Msa0123510:intron 45.0%
GAGTATACCAAGTCGAAACC+TGG + chr1_3:50679834-50679853 None:intergenic 45.0%
!! AAAAGAAATAAAAAAAAAAA+AGG + chr1_3:50676839-50676858 None:intergenic 5.0%
! GATTTCGTTGTGGGTTGACC+CGG - chr1_3:50677120-50677139 Msa0123510:CDS 50.0%
TATCCCTAGTCTACACCACC+GGG + chr1_3:50677141-50677160 None:intergenic 50.0%
GGTTCCATTCCTCCGTGTAT+TGG - chr1_3:50677180-50677199 Msa0123510:intron 50.0%
TGACCCAATACACGGAGGAA+TGG + chr1_3:50677187-50677206 None:intergenic 50.0%
GTTTCAATTGGGCCTGCTAG+TGG - chr1_3:50677229-50677248 Msa0123510:intron 50.0%
TAATCCTAGCGTCCACTAGC+AGG + chr1_3:50677244-50677263 None:intergenic 50.0%
GTGGACGCTAGGATTAATCC+CGG - chr1_3:50677248-50677267 Msa0123510:intron 50.0%
TTATGGACCTAGTGCCAAGG+TGG + chr1_3:50677895-50677914 None:intergenic 50.0%
AGCTTATGGACCTAGTGCCA+AGG + chr1_3:50677898-50677917 None:intergenic 50.0%
ATGAAGAGAGAACCGCTGTC+AGG + chr1_3:50678551-50678570 None:intergenic 50.0%
! GGTTTCAGTGCTGTTGCAGA+AGG + chr1_3:50678664-50678683 None:intergenic 50.0%
TGAAAAGACCGGTATGCCAG+TGG - chr1_3:50679084-50679103 Msa0123510:intron 50.0%
TACTGGGGCTATTGCTCTGA+AGG - chr1_3:50679303-50679322 Msa0123510:intron 50.0%
! ACTGGGGCTATTGCTCTGAA+GGG - chr1_3:50679304-50679323 Msa0123510:intron 50.0%
CAATTGCAACAATGGCGCAC+AGG + chr1_3:50679609-50679628 None:intergenic 50.0%
! GAGTGTCTTGGGTTGTTTCC+CGG - chr1_3:50679780-50679799 Msa0123510:intron 50.0%
CGATCATCCAGGTTTCGACT+TGG - chr1_3:50679824-50679843 Msa0123510:intron 50.0%
TTGACCCGGTGGTGTAGACT+AGG - chr1_3:50677134-50677153 Msa0123510:CDS 55.0%
TGACCCGGTGGTGTAGACTA+GGG - chr1_3:50677135-50677154 Msa0123510:CDS 55.0%
TGGACTGACCCAATACACGG+AGG + chr1_3:50677192-50677211 None:intergenic 55.0%
GGTCAAACCACCTTGGCACT+AGG - chr1_3:50677885-50677904 Msa0123510:intron 55.0%
!! GCTATTGCTCTGAAGGGCCT+TGG - chr1_3:50679310-50679329 Msa0123510:intron 55.0%
!! ATTGCTCTGAAGGGCCTTGG+AGG - chr1_3:50679313-50679332 Msa0123510:intron 55.0%
!! TTGCTCTGAAGGGCCTTGGA+GGG - chr1_3:50679314-50679333 Msa0123510:intron 55.0%
CTCTTTCGGAGCTTTGCTGC+TGG - chr1_3:50679357-50679376 Msa0123510:CDS 55.0%
! TTCGTTGTGGGTTGACCCGG+TGG - chr1_3:50677123-50677142 Msa0123510:CDS 60.0%
!! TGCTCTGAAGGGCCTTGGAG+GGG - chr1_3:50679315-50679334 Msa0123510:intron 60.0%
! TGGGCCTGCTAGTGGACGCT+AGG - chr1_3:50677237-50677256 Msa0123510:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50676523 50680321 50676523 ID=Msa0123510;Name=Msa0123510
chr1_3 mRNA 50676523 50680321 50676523 ID=Msa0123510-mRNA-1;Parent=Msa0123510;Name=Msa0123510-mRNA-1;_AED=0.15;_eAED=0.15;_QI=197|0.6|0.83|0.83|0.8|0.66|6|536|155
chr1_3 exon 50676523 50676610 50676523 ID=Msa0123510-mRNA-1:exon:15452;Parent=Msa0123510-mRNA-1
chr1_3 exon 50676645 50677191 50676645 ID=Msa0123510-mRNA-1:exon:15451;Parent=Msa0123510-mRNA-1
chr1_3 exon 50677281 50677379 50677281 ID=Msa0123510-mRNA-1:exon:15450;Parent=Msa0123510-mRNA-1
chr1_3 exon 50677466 50677555 50677466 ID=Msa0123510-mRNA-1:exon:15449;Parent=Msa0123510-mRNA-1
chr1_3 exon 50679341 50679452 50679341 ID=Msa0123510-mRNA-1:exon:15448;Parent=Msa0123510-mRNA-1
chr1_3 exon 50680057 50680321 50680057 ID=Msa0123510-mRNA-1:exon:15447;Parent=Msa0123510-mRNA-1
chr1_3 five_prime_UTR 50680125 50680321 50680125 ID=Msa0123510-mRNA-1:five_prime_utr;Parent=Msa0123510-mRNA-1
chr1_3 CDS 50680057 50680124 50680057 ID=Msa0123510-mRNA-1:cds;Parent=Msa0123510-mRNA-1
chr1_3 CDS 50679341 50679452 50679341 ID=Msa0123510-mRNA-1:cds;Parent=Msa0123510-mRNA-1
chr1_3 CDS 50677466 50677555 50677466 ID=Msa0123510-mRNA-1:cds;Parent=Msa0123510-mRNA-1
chr1_3 CDS 50677281 50677379 50677281 ID=Msa0123510-mRNA-1:cds;Parent=Msa0123510-mRNA-1
chr1_3 CDS 50677093 50677191 50677093 ID=Msa0123510-mRNA-1:cds;Parent=Msa0123510-mRNA-1
chr1_3 three_prime_UTR 50676645 50677092 50676645 ID=Msa0123510-mRNA-1:three_prime_utr;Parent=Msa0123510-mRNA-1
chr1_3 three_prime_UTR 50676523 50676610 50676523 ID=Msa0123510-mRNA-1:three_prime_utr;Parent=Msa0123510-mRNA-1
Gene Sequence

>Msa0123510

ATGGCTTTCTCTTCCTTTCTCGGAAGAGTTCTCTTCGCTTCCATTTTCATTCTCTCTGCTTACCAAGAGAAACGAATGAAACTGTTGCAAATCTTTTGTAGGAAATCTAACCTTGCATTTTCTTCTGTATTGAATTTTAATAATTTTGCTATAGCTGCTGGTTATTCTTGTCTGGATATGATTAAACTTGTAATTACTGGGGCTATTGCTCTGAAGGGCCTTGGAGGGGTTCTTTTCATATTCGGAAGCTCTTTCGGAGCTTTGCTGCTGCTTCTGCATCAGTTGATTGCTACTCCAATTCGTTATGATTTTTACAATTATGACAACGAGGACAAAGAATTTACTCAACTTTTCATCAAATTTACACAGAACATGGCTCTTTTTGGAGCTTTGTTGTTTTTCATTGGGATGAAAAACTCCATTCCTAGAAGACAACCAAAGAAGGCTCCAAAAACAAAAACATATTAG

Protein sequence

>Msa0123510

MAFSSFLGRVLFASIFILSAYQEKRMKLLQIFCRKSNLAFSSVLNFNNFAIAAGYSCLDMIKLVITGAIALKGLGGVLFIFGSSFGALLLLLHQLIATPIRYDFYNYDNEDKEFTQLFIKFTQNMALFGALLFFIGMKNSIPRRQPKKAPKTKTY*