AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851470 MtrunA17_Chr5g0446951 99.714 699 2 0 1 699 1 699 0.0 1416
Msa0851470 MtrunA17_Chr5g0446941 99.714 699 2 0 1 699 1 699 0.0 1416
Msa0851470 MtrunA17_Chr6g0469201 88.017 701 80 3 1 699 1 699 0.0 1187
Msa0851470 MtrunA17_Chr1g0202601 83.286 700 93 3 1 699 6 682 0.0 1110
Msa0851470 MtrunA17_Chr1g0156731 48.867 706 320 8 5 673 78 779 0.0 643
Msa0851470 MtrunA17_Chr5g0420861 45.634 710 354 13 5 698 82 775 0.0 577
Msa0851470 MtrunA17_Chr5g0447581 45.414 676 346 10 5 667 90 755 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851470 AT5G56000.1 90.714 700 63 2 1 699 1 699 0.0 1206
Msa0851470 AT5G56030.1 92.286 700 52 2 1 699 1 699 0.0 1196
Msa0851470 AT5G56010.1 92.000 700 54 2 1 699 1 699 0.0 1194
Msa0851470 AT5G56030.2 88.615 729 52 3 1 699 1 728 0.0 1182
Msa0851470 AT5G52640.1 85.043 702 100 5 1 699 1 700 0.0 1149
Msa0851470 AT4G24190.1 50.356 703 310 8 5 672 77 775 0.0 642
Msa0851470 AT4G24190.2 50.356 703 310 8 5 672 77 775 0.0 642
Msa0851470 AT2G04030.1 47.189 676 331 10 5 668 77 738 0.0 596
Msa0851470 AT3G07770.1 45.361 679 344 11 5 668 95 761 0.0 590
Msa0851470 AT3G07770.3 45.361 679 344 11 5 668 95 761 0.0 590
Msa0851470 AT3G07770.2 45.361 679 344 11 5 668 95 761 0.0 590
Msa0851470 AT2G04030.2 46.736 674 334 10 5 668 77 735 0.0 587

Find 184 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGTCAGTTGGAGTTTA+AGG 0.170053 5_4:-41747346 Msa0851470:CDS
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5_4:-41746337 Msa0851470:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5_4:+41747639 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5_4:-41747470 Msa0851470:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5_4:-41747647 Msa0851470:CDS
CTTGATGAGCCCAACACTTT+TGG 0.271765 5_4:-41746307 Msa0851470:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5_4:-41747646 Msa0851470:CDS
ACAAGAGACGTTCGCTTTCC+AGG 0.298645 5_4:-41749081 Msa0851470:CDS
ACTCAAGTTGATCCTCCTTT+AGG 0.313372 5_4:+41747721 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5_4:+41749100 None:intergenic
TGTTTACCTATCGTAAGTTT+TGG 0.322963 5_4:-41746016 Msa0851470:three_prime_UTR
AATTTGTATCAAAATATAAA+AGG 0.330039 5_4:+41745963 None:intergenic
TGAAGTAGTTACTATTGTTT+AGG 0.330583 5_4:-41746148 Msa0851470:three_prime_UTR
TCCTCCATGATGGGATTCTC+AGG 0.339757 5_4:+41746427 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5_4:-41747388 Msa0851470:CDS
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5_4:-41746547 Msa0851470:CDS
GACATACAGCTTGATGTTGT+TGG 0.373069 5_4:+41747266 None:intergenic
AAACGTTAGCTTACCAGCTT+TGG 0.375649 5_4:+41748099 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5_4:-41747955 Msa0851470:CDS
GAGATCAAAAGGTGCTCTCT+TGG 0.380844 5_4:+41747308 None:intergenic
AATGACATTTACTACATTAC+CGG 0.381181 5_4:-41746874 Msa0851470:CDS
AGTTCTTCCTGATGACCTTA+AGG 0.384170 5_4:+41747115 None:intergenic
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5_4:-41747401 Msa0851470:CDS
TGAGTATCTTAGCTTTGTTA+AGG 0.384871 5_4:-41747202 Msa0851470:CDS
TCTGGCTTCCTCATCCAAAT+AGG 0.390372 5_4:+41747456 None:intergenic
ACATACAGCTTGATGTTGTT+GGG 0.394439 5_4:+41747267 None:intergenic
AAAGTGTTGTTGGTCTTGTC+AGG 0.406501 5_4:+41748151 None:intergenic
AATGATAGTCAAAGTGTTGT+TGG 0.411318 5_4:+41748141 None:intergenic
TCATCCTTTGTAATCTCCTC+TGG 0.414109 5_4:+41747438 None:intergenic
CTTCTGTGCATAATTAACTA+AGG 0.416929 5_4:-41745931 Msa0851470:three_prime_UTR
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5_4:-41747574 Msa0851470:CDS
ACTATCATTGATAGTGGCAT+TGG 0.423433 5_4:-41748127 Msa0851470:CDS
GTGAGTATGATTGGACAGTT+TGG 0.425748 5_4:-41747909 Msa0851470:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5_4:+41746936 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5_4:-41747568 Msa0851470:CDS
CTTCTCTGTTGAGGGTCAGT+TGG 0.437261 5_4:-41747355 Msa0851470:CDS
ACAAGATCCTTAAGGTCATC+AGG 0.437555 5_4:-41747122 Msa0851470:CDS
GAGTATCTTAGCTTTGTTAA+GGG 0.438963 5_4:-41747201 Msa0851470:CDS
CATGAAGGCACAAGCTTTGA+GGG 0.445178 5_4:-41746500 Msa0851470:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.445872 5_4:-41747583 Msa0851470:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5_4:+41747297 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.447502 5_4:-41747363 Msa0851470:CDS
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5_4:-41746718 Msa0851470:CDS
ACTTTGACTATCATTGATAG+TGG 0.450944 5_4:-41748133 Msa0851470:CDS
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5_4:-41746818 Msa0851470:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5_4:-41747400 Msa0851470:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5_4:+41747389 None:intergenic
TATAGCTTCCATGAATTCCT+TGG 0.467031 5_4:+41747947 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5_4:-41746749 Msa0851470:CDS
TGCTTACCTTGTTGCTGAGA+AGG 0.468853 5_4:-41747871 Msa0851470:CDS
AGTAAATGACCCACCAGCTT+GGG 0.469169 5_4:+41747800 None:intergenic
AGATCAAAAGGTGCTCTCTT+GGG 0.469930 5_4:+41747309 None:intergenic
TGTTAAGCACTTCTCTGTTG+AGG 0.472630 5_4:-41747364 Msa0851470:CDS
TTCCTCAGCTCCTCCATGAT+GGG 0.474148 5_4:+41746418 None:intergenic
TGAGAACGAGGAAGAGAAGA+AGG 0.475978 5_4:-41747589 Msa0851470:CDS
AGTAGACGAGGAGAAAGAAA+AGG 0.477035 5_4:-41747544 Msa0851470:CDS
TTTCTCTAAGAACTTGAAGC+TGG 0.477075 5_4:-41747019 Msa0851470:CDS
GGTGCTGATGTGAGTATGAT+TGG 0.477447 5_4:-41747918 Msa0851470:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.477457 5_4:-41746484 Msa0851470:CDS
TCATGAAGGCACAAGCTTTG+AGG 0.479345 5_4:-41746501 Msa0851470:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5_4:+41748201 None:intergenic
TAGCTTTGTTAAGGGTATTG+TGG 0.484688 5_4:-41747193 Msa0851470:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5_4:-41747067 Msa0851470:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5_4:-41747580 Msa0851470:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5_4:+41746939 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5_4:+41746894 None:intergenic
CTAAGCTTGCTGATTTGCTC+AGG 0.489387 5_4:-41746969 Msa0851470:CDS
TCAACAGAACAAGATCCTTA+AGG 0.489546 5_4:-41747130 Msa0851470:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5_4:-41747493 Msa0851470:CDS
ATGATTGGACAGTTTGGTGT+TGG 0.493545 5_4:-41747903 Msa0851470:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5_4:-41747691 Msa0851470:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5_4:+41746855 None:intergenic
TAAAATAACTCTCATCCTAA+AGG 0.494415 5_4:-41747736 Msa0851470:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5_4:+41746822 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5_4:-41746632 Msa0851470:CDS
GTAGTTACTATTGTTTAGGA+AGG 0.496454 5_4:-41746144 Msa0851470:three_prime_UTR
GGCATTGGAATGACCAAAGC+TGG 0.498686 5_4:-41748112 Msa0851470:intron
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5_4:-41746602 Msa0851470:CDS
ATCTCTCTTGAAATGTTAAG+TGG 0.500434 5_4:+41747156 None:intergenic
TTCGTCATCATTGTGCTTGG+TGG 0.500444 5_4:+41747839 None:intergenic
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5_4:-41747972 Msa0851470:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5_4:-41747579 Msa0851470:CDS
AGAGAGAGTTGCAGAGTGTG+AGG 0.503557 5_4:+41749175 None:intergenic
GTGGGTCATTTACTGTGACC+AGG 0.504199 5_4:-41747791 Msa0851470:CDS
GATACTACTGGTGAAGCTCT+TGG 0.506627 5_4:-41747768 Msa0851470:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5_4:-41746556 Msa0851470:CDS
TTTCCTCAGCTCCTCCATGA+TGG 0.507054 5_4:+41746417 None:intergenic
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5_4:-41746817 Msa0851470:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5_4:-41746623 Msa0851470:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5_4:+41746823 None:intergenic
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5_4:+41746824 None:intergenic
AGCTTCACCAGTAGTATCCC+TGG 0.516220 5_4:+41747773 None:intergenic
CTTCATGATCCTCTCCATGT+TGG 0.521693 5_4:+41746516 None:intergenic
TGCTGACATGCCACCATTGG+AGG 0.530142 5_4:-41746221 Msa0851470:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5_4:+41746298 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5_4:-41746277 Msa0851470:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5_4:+41746208 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5_4:-41747964 Msa0851470:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5_4:-41747500 Msa0851470:CDS
TACTGGTGAAGCTCTTGGTA+GGG 0.540570 5_4:-41747763 Msa0851470:CDS
TAGGTAAACAATAGCTACGC+TGG 0.543004 5_4:+41746029 None:intergenic
TTCATGGAAGCTATAGCTGC+TGG 0.543301 5_4:-41747939 Msa0851470:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5_4:+41746297 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5_4:-41746224 Msa0851470:CDS
TTCTCTAAGAACTTGAAGCT+GGG 0.547307 5_4:-41747018 Msa0851470:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5_4:-41746748 Msa0851470:CDS
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5_4:-41747810 Msa0851470:CDS
CTGTTCGTCATCATTGTGCT+TGG 0.552015 5_4:+41747836 None:intergenic
TTAACAAAGCTAAGATACTC+AGG 0.554583 5_4:+41747204 None:intergenic
ATAATGTGAATGAACAGCTC+TGG 0.554976 5_4:+41748175 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.555403 5_4:-41747112 Msa0851470:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5_4:+41746818 None:intergenic
CAGTAAATGACCCACCAGCT+TGG 0.561388 5_4:+41747799 None:intergenic
CTACTGGTGAAGCTCTTGGT+AGG 0.561530 5_4:-41747764 Msa0851470:CDS
GGAAACGTGCTGATGCTGAC+AGG 0.562915 5_4:-41746399 Msa0851470:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5_4:-41746543 Msa0851470:CDS
GGACTATGTTACCAGGATGA+AGG 0.567325 5_4:-41746905 Msa0851470:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5_4:-41747697 Msa0851470:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5_4:+41746308 None:intergenic
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5_4:-41746182 Msa0851470:CDS
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5_4:-41746614 Msa0851470:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5_4:+41746915 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5_4:-41746797 Msa0851470:CDS
CCTCCATGATGGGATTCTCA+GGG 0.578771 5_4:+41746428 None:intergenic
AGCAAGGAGAATCGACAACT+CGG 0.578868 5_4:+41746569 None:intergenic
ACAACCTAGGTACCATTGCT+AGG 0.579010 5_4:-41747977 Msa0851470:CDS
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5_4:+41748218 None:intergenic
GCAGATTTGGTGAACAACCT+AGG 0.583680 5_4:-41747990 Msa0851470:intron
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5_4:-41747464 Msa0851470:CDS
ACTGGTGAAGCTCTTGGTAG+GGG 0.586981 5_4:-41747762 Msa0851470:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5_4:+41749063 None:intergenic
CAGACCTAGCAATGGTACCT+AGG 0.590700 5_4:+41747973 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5_4:+41746944 None:intergenic
TAAGGTTGAGGAAGTAGACG+AGG 0.592744 5_4:-41747556 Msa0851470:CDS
TGGGTCATTTACTGTGACCA+GGG 0.596558 5_4:-41747790 Msa0851470:CDS
CAACCCTGAGAATCCCATCA+TGG 0.597286 5_4:-41746431 Msa0851470:CDS
ATCCCATCATGGAGGAGCTG+AGG 0.597622 5_4:-41746420 Msa0851470:CDS
GTATGCTGTTGGTCAGCTCA+AGG 0.599835 5_4:-41746758 Msa0851470:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5_4:-41746641 Msa0851470:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5_4:-41746199 Msa0851470:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5_4:-41746188 Msa0851470:CDS
CAGGAATGACAAATCTGTGA+AGG 0.605359 5_4:-41746380 Msa0851470:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5_4:+41746911 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5_4:-41746717 Msa0851470:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5_4:-41746912 Msa0851470:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5_4:-41746458 Msa0851470:CDS
CAATAACCTTCTCAGCAACA+AGG 0.612540 5_4:+41747865 None:intergenic
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5_4:-41747813 Msa0851470:CDS
AGCTTTGAGGGATAGCAGCA+TGG 0.615872 5_4:-41746488 Msa0851470:CDS
AATAACTCTCATCCTAAAGG+AGG 0.618093 5_4:-41747733 Msa0851470:CDS
AGGTAAACAATAGCTACGCT+GGG 0.618284 5_4:+41746030 None:intergenic
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5_4:-41746260 Msa0851470:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5_4:-41746515 Msa0851470:CDS
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5_4:-41746695 Msa0851470:CDS
CTATTGTTTAGGAAGGTGTG+AGG 0.624521 5_4:-41746137 Msa0851470:three_prime_UTR
ACTGTGACCAGGGATACTAC+TGG 0.626949 5_4:-41747780 Msa0851470:CDS
GGATCAACTTGAGTATCTTG+AGG 0.629396 5_4:-41747712 Msa0851470:CDS
TAAGGGTATTGTGGACTCTG+AGG 0.633755 5_4:-41747184 Msa0851470:CDS
AGGTACCACTCCACCAAGAG+TGG 0.636721 5_4:-41746949 Msa0851470:CDS
GCAATTGATGAGTATGCTGT+TGG 0.641021 5_4:-41746769 Msa0851470:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5_4:-41746530 Msa0851470:CDS
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5_4:+41747685 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5_4:-41747809 Msa0851470:CDS
GACACACCAAAACTTACGAT+AGG 0.650905 5_4:+41746010 None:intergenic
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5_4:+41746211 None:intergenic
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5_4:-41746622 Msa0851470:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5_4:-41746926 Msa0851470:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5_4:+41746825 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5_4:-41746525 Msa0851470:CDS
TATGTTACCAGGATGAAGGA+AGG 0.670222 5_4:-41746901 Msa0851470:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5_4:-41746200 Msa0851470:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5_4:+41747241 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5_4:+41746553 None:intergenic
GAAGCCAGAGGAGATTACAA+AGG 0.683556 5_4:-41747442 Msa0851470:CDS
GATTTCTGATGATGAGAACG+AGG 0.691928 5_4:-41747601 Msa0851470:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5_4:-41747007 Msa0851470:CDS
ATGATGACGAACAGTATGTG+TGG 0.698166 5_4:-41747827 Msa0851470:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5_4:+41747965 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5_4:-41747235 Msa0851470:CDS
CCCTGAGAATCCCATCATGG+AGG 0.716906 5_4:-41746428 Msa0851470:CDS
TATTTGGATGAGGAAGCCAG+AGG 0.740409 5_4:-41747454 Msa0851470:CDS
TGATGACGAACAGTATGTGT+GGG 0.740423 5_4:-41747826 Msa0851470:CDS
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5_4:-41746629 Msa0851470:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5_4:+41747244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTCAATTTCAATTT+AGG + chr5_4:41746495-41746514 None:intergenic 10.0%
!!! TTGTTTTTAATTTTGAATTT+TGG - chr5_4:41748996-41749015 Msa0851470:CDS 10.0%
!! AATTTGTATCAAAATATAAA+AGG + chr5_4:41749124-41749143 None:intergenic 10.0%
!!! TGGATTATTTTTTCAATTTT+AGG - chr5_4:41746227-41746246 Msa0851470:CDS 15.0%
!!! GGATTATTTTTTCAATTTTA+GGG - chr5_4:41746228-41746247 Msa0851470:CDS 15.0%
!! TTAATTGATTATATACTCTT+AGG - chr5_4:41746257-41746276 Msa0851470:CDS 15.0%
!! TAATTGATTATATACTCTTA+GGG - chr5_4:41746258-41746277 Msa0851470:CDS 15.0%
!!! AAATTGAATTTTAATTAGTC+CGG - chr5_4:41746501-41746520 Msa0851470:CDS 15.0%
!! ACTTTCATTCATATAATTAA+AGG + chr5_4:41746630-41746649 None:intergenic 15.0%
!!! TCTAATACTTTGAAATATTA+GGG - chr5_4:41746737-41746756 Msa0851470:CDS 15.0%
!!! TCTTTTGTTATCGTTTTTAT+TGG - chr5_4:41746207-41746226 Msa0851470:CDS 20.0%
!!! ATGATTTTTTAGTCATGTTT+AGG - chr5_4:41746345-41746364 Msa0851470:CDS 20.0%
!! AAAAAATTGATCACGTAATA+AGG + chr5_4:41746544-41746563 None:intergenic 20.0%
!!! GTCTAATACTTTGAAATATT+AGG - chr5_4:41746736-41746755 Msa0851470:CDS 20.0%
!!! TTTTATTAGATGCAATTTTC+TGG - chr5_4:41749030-41749049 Msa0851470:CDS 20.0%
!!! CAATACTTTTTACAGTAACA+AGG - chr5_4:41746057-41746076 Msa0851470:three_prime_UTR 25.0%
!! ATTATATACTCTTAGGGTTT+TGG - chr5_4:41746264-41746283 Msa0851470:CDS 25.0%
! ACATGACTAAAAAATCATCA+CGG + chr5_4:41746343-41746362 None:intergenic 25.0%
! ATTGTGATGAATGTTCTATA+CGG - chr5_4:41746394-41746413 Msa0851470:CDS 25.0%
!!! ATACTTTGAAATATTAGGGT+TGG - chr5_4:41746741-41746760 Msa0851470:CDS 25.0%
!!! TACTTTGAAATATTAGGGTT+GGG - chr5_4:41746742-41746761 Msa0851470:CDS 25.0%
!!! TGTTTTTATGAGTCAGAAAT+TGG - chr5_4:41747007-41747026 Msa0851470:CDS 25.0%
! TAAAATAACTCTCATCCTAA+AGG - chr5_4:41747348-41747367 Msa0851470:CDS 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG - chr5_4:41747567-41747586 Msa0851470:CDS 25.0%
! AATGACATTTACTACATTAC+CGG - chr5_4:41748210-41748229 Msa0851470:CDS 25.0%
! TGAAGTAGTTACTATTGTTT+AGG - chr5_4:41748936-41748955 Msa0851470:intron 25.0%
!!! GAAAGTGTTTTGTTTTGTTG+TGG + chr5_4:41745947-41745966 None:intergenic 30.0%
! ACGTTGTCACTTGATATAAT+CGG - chr5_4:41746572-41746591 Msa0851470:CDS 30.0%
!! ATCGGCACTTTAATTTTTGA+AGG - chr5_4:41746590-41746609 Msa0851470:CDS 30.0%
! AAATATTAGGGTTGGGTTTT+AGG - chr5_4:41746749-41746768 Msa0851470:CDS 30.0%
! GCATGATGATTTTATTGTTG+TGG - chr5_4:41746784-41746803 Msa0851470:CDS 30.0%
TATTGTTCTGATTCTTGTGT+TGG - chr5_4:41746814-41746833 Msa0851470:CDS 30.0%
!! AATGATAGTCAAAGTGTTGT+TGG + chr5_4:41746946-41746965 None:intergenic 30.0%
ACTTTGACTATCATTGATAG+TGG - chr5_4:41746951-41746970 Msa0851470:CDS 30.0%
! TCTGTTTTATGTTGCAGATT+TGG - chr5_4:41747081-41747100 Msa0851470:CDS 30.0%
TTAGCTATCCAATTTCTCTT+TGG - chr5_4:41747437-41747456 Msa0851470:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG - chr5_4:41747438-41747457 Msa0851470:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG - chr5_4:41747570-41747589 Msa0851470:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG + chr5_4:41747790-41747809 None:intergenic 30.0%
TTAACAAAGCTAAGATACTC+AGG + chr5_4:41747883-41747902 None:intergenic 30.0%
!! TGAGTATCTTAGCTTTGTTA+AGG - chr5_4:41747882-41747901 Msa0851470:CDS 30.0%
!! GAGTATCTTAGCTTTGTTAA+GGG - chr5_4:41747883-41747902 Msa0851470:CDS 30.0%
ATCTCTCTTGAAATGTTAAG+TGG + chr5_4:41747931-41747950 None:intergenic 30.0%
!! AGACTACAACAAGTTTTATG+AGG - chr5_4:41748041-41748060 Msa0851470:intron 30.0%
TGAGGATGAAAAGAAAAAGA+TGG - chr5_4:41748407-41748426 Msa0851470:intron 30.0%
GTAGTTACTATTGTTTAGGA+AGG - chr5_4:41748940-41748959 Msa0851470:intron 30.0%
! TGTTTACCTATCGTAAGTTT+TGG - chr5_4:41749068-41749087 Msa0851470:CDS 30.0%
CTTCTGTGCATAATTAACTA+AGG - chr5_4:41749153-41749172 Msa0851470:five_prime_UTR 30.0%
GAAGAAGAAGAAGCTTACAT+CGG + chr5_4:41746116-41746135 None:intergenic 35.0%
!! TATACTCTTAGGGTTTTGGT+TGG - chr5_4:41746268-41746287 Msa0851470:CDS 35.0%
GGATTGATATCAATACAAGC+CGG + chr5_4:41746523-41746542 None:intergenic 35.0%
! TTTGGATAAGATCCGTTTTG+AGG - chr5_4:41746854-41746873 Msa0851470:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG - chr5_4:41746855-41746874 Msa0851470:CDS 35.0%
ATAATGTGAATGAACAGCTC+TGG + chr5_4:41746912-41746931 None:intergenic 35.0%
!! ACTATCATTGATAGTGGCAT+TGG - chr5_4:41746957-41746976 Msa0851470:CDS 35.0%
TATAGCTTCCATGAATTCCT+TGG + chr5_4:41747140-41747159 None:intergenic 35.0%
AATAACTCTCATCCTAAAGG+AGG - chr5_4:41747351-41747370 Msa0851470:CDS 35.0%
TTCTCAACCCAAAGAGAAAT+TGG + chr5_4:41747448-41747467 None:intergenic 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG - chr5_4:41747584-41747603 Msa0851470:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG + chr5_4:41747820-41747839 None:intergenic 35.0%
AGTTGTCCATGATGAAAACA+CGG + chr5_4:41747846-41747865 None:intergenic 35.0%
!! TAGCTTTGTTAAGGGTATTG+TGG - chr5_4:41747891-41747910 Msa0851470:CDS 35.0%
TCAACAGAACAAGATCCTTA+AGG - chr5_4:41747954-41747973 Msa0851470:CDS 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG - chr5_4:41748017-41748036 Msa0851470:intron 35.0%
! TTTCTCTAAGAACTTGAAGC+TGG - chr5_4:41748065-41748084 Msa0851470:intron 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG - chr5_4:41748066-41748085 Msa0851470:intron 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG + chr5_4:41748095-41748114 None:intergenic 35.0%
GGGATATGAAGTGATTTACA+TGG - chr5_4:41748287-41748306 Msa0851470:intron 35.0%
TAGTGTCTGCAACTAAAGAA+GGG - chr5_4:41748367-41748386 Msa0851470:intron 35.0%
GAAAAAGATGGAAGAACAGA+AGG - chr5_4:41748419-41748438 Msa0851470:intron 35.0%
CTCTGCGAAAAAAACCAGAT+CGG - chr5_4:41745970-41745989 Msa0851470:three_prime_UTR 40.0%
GAAAAAAACCAGATCGGCAA+TGG - chr5_4:41745976-41745995 Msa0851470:three_prime_UTR 40.0%
CGGTGTTCAAACAACAACAA+CGG + chr5_4:41746323-41746342 None:intergenic 40.0%
GTGTTGGAATGTTGTGTTGT+AGG - chr5_4:41746830-41746849 Msa0851470:CDS 40.0%
GAATGTTGTGTTGTAGGCTT+TGG - chr5_4:41746836-41746855 Msa0851470:CDS 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG + chr5_4:41746886-41746905 None:intergenic 40.0%
!! AAAGTGTTGTTGGTCTTGTC+AGG + chr5_4:41746936-41746955 None:intergenic 40.0%
! AAACGTTAGCTTACCAGCTT+TGG + chr5_4:41746988-41747007 None:intergenic 40.0%
GTGAGTATGATTGGACAGTT+TGG - chr5_4:41747175-41747194 Msa0851470:CDS 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG - chr5_4:41747181-41747200 Msa0851470:CDS 40.0%
CAATAACCTTCTCAGCAACA+AGG + chr5_4:41747222-41747241 None:intergenic 40.0%
! ATGATGACGAACAGTATGTG+TGG - chr5_4:41747257-41747276 Msa0851470:CDS 40.0%
! TGATGACGAACAGTATGTGT+GGG - chr5_4:41747258-41747277 Msa0851470:CDS 40.0%
!! ACTCAAGTTGATCCTCCTTT+AGG + chr5_4:41747366-41747385 None:intergenic 40.0%
GGATCAACTTGAGTATCTTG+AGG - chr5_4:41747372-41747391 Msa0851470:CDS 40.0%
TCTTAACCAAGTCCTTCAGA+CGG + chr5_4:41747402-41747421 None:intergenic 40.0%
! GATTTCTGATGATGAGAACG+AGG - chr5_4:41747483-41747502 Msa0851470:CDS 40.0%
AGTAGACGAGGAGAAAGAAA+AGG - chr5_4:41747540-41747559 Msa0851470:CDS 40.0%
GGTGTCTAATGAATGGTCTT+TGG - chr5_4:41747591-41747610 Msa0851470:CDS 40.0%
TGAACAAGCAGAAGCCTATT+TGG - chr5_4:41747614-41747633 Msa0851470:CDS 40.0%
TCATCCTTTGTAATCTCCTC+TGG + chr5_4:41747649-41747668 None:intergenic 40.0%
ACAAGAGTCTCACCAATGAT+TGG - chr5_4:41747683-41747702 Msa0851470:CDS 40.0%
CAAGAGTCTCACCAATGATT+GGG - chr5_4:41747684-41747703 Msa0851470:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG + chr5_4:41747698-41747717 None:intergenic 40.0%
!! CAATGATTGGGAAGAGCATT+TGG - chr5_4:41747696-41747715 Msa0851470:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG - chr5_4:41747720-41747739 Msa0851470:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG - chr5_4:41747721-41747740 Msa0851470:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+GGG + chr5_4:41747778-41747797 None:intergenic 40.0%
GACATACAGCTTGATGTTGT+TGG + chr5_4:41747821-41747840 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG - chr5_4:41747849-41747868 Msa0851470:CDS 40.0%
ACAAGATCCTTAAGGTCATC+AGG - chr5_4:41747962-41747981 Msa0851470:CDS 40.0%
AGTTCTTCCTGATGACCTTA+AGG + chr5_4:41747972-41747991 None:intergenic 40.0%
TAAGGTCATCAGGAAGAACT+TGG - chr5_4:41747972-41747991 Msa0851470:CDS 40.0%
TATGTTACCAGGATGAAGGA+AGG - chr5_4:41748183-41748202 Msa0851470:CDS 40.0%
AACAGCTTTCTTGCTTTCAC+CGG + chr5_4:41748232-41748251 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG + chr5_4:41748264-41748283 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG - chr5_4:41748267-41748286 Msa0851470:intron 40.0%
GCAATTGATGAGTATGCTGT+TGG - chr5_4:41748315-41748334 Msa0851470:intron 40.0%
CTAGTGTCTGCAACTAAAGA+AGG - chr5_4:41748366-41748385 Msa0851470:intron 40.0%
GAAGTTCGACAATCTTTGCA+AGG - chr5_4:41748443-41748462 Msa0851470:intron 40.0%
CAATCTTTGCAAGGTGATCA+AGG - chr5_4:41748452-41748471 Msa0851470:intron 40.0%
TGTTTAGTGACTGGTGAGTA+TGG - chr5_4:41748537-41748556 Msa0851470:intron 40.0%
CATGTCAAGCAAGAAGACAA+TGG - chr5_4:41748626-41748645 Msa0851470:intron 40.0%
CAGGAATGACAAATCTGTGA+AGG - chr5_4:41748704-41748723 Msa0851470:intron 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG + chr5_4:41748789-41748808 None:intergenic 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG + chr5_4:41748790-41748809 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG - chr5_4:41748947-41748966 Msa0851470:intron 40.0%
AGGTAAACAATAGCTACGCT+GGG + chr5_4:41749057-41749076 None:intergenic 40.0%
TAGGTAAACAATAGCTACGC+TGG + chr5_4:41749058-41749077 None:intergenic 40.0%
GACACACCAAAACTTACGAT+AGG + chr5_4:41749077-41749096 None:intergenic 40.0%
AAAAACCAGATCGGCAATGG+CGG - chr5_4:41745979-41745998 Msa0851470:three_prime_UTR 45.0%
! GAAGTTGATTGATCTCAGCC+TGG + chr5_4:41746024-41746043 None:intergenic 45.0%
!!! ACTCTTAGGGTTTTGGTTGG+TGG - chr5_4:41746271-41746290 Msa0851470:CDS 45.0%
!! TTTGGTTGGTGGCGTTGTTT+AGG - chr5_4:41746282-41746301 Msa0851470:CDS 45.0%
!! GCAGATTTGGTGAACAACCT+AGG - chr5_4:41747094-41747113 Msa0851470:CDS 45.0%
ACAACCTAGGTACCATTGCT+AGG - chr5_4:41747107-41747126 Msa0851470:CDS 45.0%
GTCTGGTACCAAGGAATTCA+TGG - chr5_4:41747129-41747148 Msa0851470:CDS 45.0%
TTCATGGAAGCTATAGCTGC+TGG - chr5_4:41747145-41747164 Msa0851470:CDS 45.0%
!! GGTGCTGATGTGAGTATGAT+TGG - chr5_4:41747166-41747185 Msa0851470:CDS 45.0%
TGCTTACCTTGTTGCTGAGA+AGG - chr5_4:41747213-41747232 Msa0851470:CDS 45.0%
TTCGTCATCATTGTGCTTGG+TGG + chr5_4:41747248-41747267 None:intergenic 45.0%
CTGTTCGTCATCATTGTGCT+TGG + chr5_4:41747251-41747270 None:intergenic 45.0%
AGTAAATGACCCACCAGCTT+GGG + chr5_4:41747287-41747306 None:intergenic 45.0%
TGGGTCATTTACTGTGACCA+GGG - chr5_4:41747294-41747313 Msa0851470:CDS 45.0%
GATACTACTGGTGAAGCTCT+TGG - chr5_4:41747316-41747335 Msa0851470:CDS 45.0%
TACTGGTGAAGCTCTTGGTA+GGG - chr5_4:41747321-41747340 Msa0851470:CDS 45.0%
TGAGAACGAGGAAGAGAAGA+AGG - chr5_4:41747495-41747514 Msa0851470:CDS 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG - chr5_4:41747505-41747524 Msa0851470:CDS 45.0%
TAAGGTTGAGGAAGTAGACG+AGG - chr5_4:41747528-41747547 Msa0851470:CDS 45.0%
AGCAGAAGCCTATTTGGATG+AGG - chr5_4:41747620-41747639 Msa0851470:CDS 45.0%
! TCTGGCTTCCTCATCCAAAT+AGG + chr5_4:41747631-41747650 None:intergenic 45.0%
TATTTGGATGAGGAAGCCAG+AGG - chr5_4:41747630-41747649 Msa0851470:CDS 45.0%
GAAGCCAGAGGAGATTACAA+AGG - chr5_4:41747642-41747661 Msa0851470:CDS 45.0%
TGAGGGTCAGTTGGAGTTTA+AGG - chr5_4:41747738-41747757 Msa0851470:CDS 45.0%
!! GAGATCAAAAGGTGCTCTCT+TGG + chr5_4:41747779-41747798 None:intergenic 45.0%
TGTCCATGATGAAAACACGG+CGG + chr5_4:41747843-41747862 None:intergenic 45.0%
!! TAAGGGTATTGTGGACTCTG+AGG - chr5_4:41747900-41747919 Msa0851470:CDS 45.0%
!! CTAAGCTTGCTGATTTGCTC+AGG - chr5_4:41748115-41748134 Msa0851470:CDS 45.0%
TCCTGGTAACATAGTCCTTG+AGG + chr5_4:41748176-41748195 None:intergenic 45.0%
GGACTATGTTACCAGGATGA+AGG - chr5_4:41748179-41748198 Msa0851470:CDS 45.0%
ATTCTGTCCTTCCTTCATCC+TGG + chr5_4:41748193-41748212 None:intergenic 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG + chr5_4:41748263-41748282 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG + chr5_4:41748265-41748284 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG + chr5_4:41748269-41748288 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG - chr5_4:41748266-41748285 Msa0851470:intron 45.0%
TGGTCAGCTCAAGGAATTTG+AGG - chr5_4:41748335-41748354 Msa0851470:intron 45.0%
GGTCAGCTCAAGGAATTTGA+GGG - chr5_4:41748336-41748355 Msa0851470:intron 45.0%
GTTGAAACTTGACGAGAGTG+AGG - chr5_4:41748389-41748408 Msa0851470:intron 45.0%
TCTTTGCAAGGTGATCAAGG+AGG - chr5_4:41748455-41748474 Msa0851470:intron 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG - chr5_4:41748462-41748481 Msa0851470:intron 45.0%
AGCAAGGAGAATCGACAACT+CGG + chr5_4:41748518-41748537 None:intergenic 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG - chr5_4:41748528-41748547 Msa0851470:intron 45.0%
TCACCAGTCACTAAACAGCA+AGG + chr5_4:41748534-41748553 None:intergenic 45.0%
TAGTGACTGGTGAGTATGGT+TGG - chr5_4:41748541-41748560 Msa0851470:intron 45.0%
CTTCATGATCCTCTCCATGT+TGG + chr5_4:41748571-41748590 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG - chr5_4:41748569-41748588 Msa0851470:intron 45.0%
! TCATGAAGGCACAAGCTTTG+AGG - chr5_4:41748583-41748602 Msa0851470:intron 45.0%
! CATGAAGGCACAAGCTTTGA+GGG - chr5_4:41748584-41748603 Msa0851470:intron 45.0%
GAGACTGCTCTTCTTACTTC+TGG - chr5_4:41748747-41748766 Msa0851470:intron 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG + chr5_4:41748779-41748798 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG - chr5_4:41748777-41748796 Msa0851470:intron 45.0%
! CTTTTGGCAACAGGATTCAC+AGG - chr5_4:41748793-41748812 Msa0851470:intron 45.0%
ATTCACAGGATGCTCAAGCT+TGG - chr5_4:41748807-41748826 Msa0851470:intron 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG - chr5_4:41748824-41748843 Msa0851470:intron 45.0%
!!! TTTTTATTTTTTTGTTTATT+AGG - chr5_4:41746140-41746159 Msa0851470:three_prime_UTR 5.0%
!!! TTTTATTTTTTTGTTTATTA+GGG - chr5_4:41746141-41746160 Msa0851470:three_prime_UTR 5.0%
AGAGAGAGTTGCAGAGTGTG+AGG + chr5_4:41745912-41745931 None:intergenic 50.0%
ACAAGAGACGTTCGCTTTCC+AGG - chr5_4:41746003-41746022 Msa0851470:three_prime_UTR 50.0%
TGTCGGTCAAGCCCTCAAAA+CGG + chr5_4:41746869-41746888 None:intergenic 50.0%
! GGCATTGGAATGACCAAAGC+TGG - chr5_4:41746972-41746991 Msa0851470:CDS 50.0%
CAGACCTAGCAATGGTACCT+AGG + chr5_4:41747114-41747133 None:intergenic 50.0%
CTAGGTACCATTGCTAGGTC+TGG - chr5_4:41747112-41747131 Msa0851470:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG + chr5_4:41747122-41747141 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG - chr5_4:41747120-41747139 Msa0851470:CDS 50.0%
CAGTAAATGACCCACCAGCT+TGG + chr5_4:41747288-41747307 None:intergenic 50.0%
GTGGGTCATTTACTGTGACC+AGG - chr5_4:41747293-41747312 Msa0851470:CDS 50.0%
ACTGTGACCAGGGATACTAC+TGG - chr5_4:41747304-41747323 Msa0851470:CDS 50.0%
AGCTTCACCAGTAGTATCCC+TGG + chr5_4:41747314-41747333 None:intergenic 50.0%
CTACTGGTGAAGCTCTTGGT+AGG - chr5_4:41747320-41747339 Msa0851470:CDS 50.0%
ACTGGTGAAGCTCTTGGTAG+GGG - chr5_4:41747322-41747341 Msa0851470:CDS 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG - chr5_4:41747501-41747520 Msa0851470:CDS 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG - chr5_4:41747504-41747523 Msa0851470:CDS 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG - chr5_4:41747510-41747529 Msa0851470:CDS 50.0%
CTTCTCTGTTGAGGGTCAGT+TGG - chr5_4:41747729-41747748 Msa0851470:CDS 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG - chr5_4:41747837-41747856 Msa0851470:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG - chr5_4:41748077-41748096 Msa0851470:intron 50.0%
CATGTCATCACCACTCTTGG+TGG + chr5_4:41748148-41748167 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG + chr5_4:41748151-41748170 None:intergenic 50.0%
TGATGACATGACCAGCCTCA+AGG - chr5_4:41748158-41748177 Msa0851470:CDS 50.0%
GGTAACATAGTCCTTGAGGC+TGG + chr5_4:41748172-41748191 None:intergenic 50.0%
GCCTCAAGGACTATGTTACC+AGG - chr5_4:41748172-41748191 Msa0851470:CDS 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG + chr5_4:41748262-41748281 None:intergenic 50.0%
GTATGCTGTTGGTCAGCTCA+AGG - chr5_4:41748326-41748345 Msa0851470:intron 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG - chr5_4:41748461-41748480 Msa0851470:intron 50.0%
GGGTGACAAGGTTGAGAAAG+TGG - chr5_4:41748482-41748501 Msa0851470:intron 50.0%
GTATGGTTGGACTGCCAACA+TGG - chr5_4:41748554-41748573 Msa0851470:intron 50.0%
!! AGCTTTGAGGGATAGCAGCA+TGG - chr5_4:41748596-41748615 Msa0851470:intron 50.0%
CAACCCTGAGAATCCCATCA+TGG - chr5_4:41748653-41748672 Msa0851470:intron 50.0%
! CCTCCATGATGGGATTCTCA+GGG + chr5_4:41748659-41748678 None:intergenic 50.0%
! TCCTCCATGATGGGATTCTC+AGG + chr5_4:41748660-41748679 None:intergenic 50.0%
TTCCTCAGCTCCTCCATGAT+GGG + chr5_4:41748669-41748688 None:intergenic 50.0%
TTTCCTCAGCTCCTCCATGA+TGG + chr5_4:41748670-41748689 None:intergenic 50.0%
! AGCCCAACACTTTTGGCAAC+AGG - chr5_4:41748784-41748803 Msa0851470:intron 50.0%
TGATGCTGACATGCCACCAT+TGG - chr5_4:41748860-41748879 Msa0851470:intron 50.0%
TCAGCATCAGCTTCCTCCAA+TGG + chr5_4:41748879-41748898 None:intergenic 50.0%
GAAGCTGATGCTGATGCAGA+GGG - chr5_4:41748885-41748904 Msa0851470:intron 50.0%
TGATGCAGAGGGAAGCAAGA+TGG - chr5_4:41748896-41748915 Msa0851470:intron 50.0%
AGAGGGAAGCAAGATGGAAG+AGG - chr5_4:41748902-41748921 Msa0851470:intron 50.0%
TTGTTCCGCCATTGCCGATC+TGG + chr5_4:41745987-41746006 None:intergenic 55.0%
TATGTGTGGGAGTCCCAAGC+TGG - chr5_4:41747271-41747290 Msa0851470:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG - chr5_4:41747387-41747406 Msa0851470:CDS 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG - chr5_4:41747516-41747535 Msa0851470:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG - chr5_4:41748135-41748154 Msa0851470:CDS 55.0%
CATCACCACTCTTGGTGGAG+TGG + chr5_4:41748143-41748162 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG - chr5_4:41748259-41748278 Msa0851470:intron 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG - chr5_4:41748470-41748489 Msa0851470:intron 55.0%
GTTGGACTGCCAACATGGAG+AGG - chr5_4:41748559-41748578 Msa0851470:intron 55.0%
TTGAGGGATAGCAGCATGGC+TGG - chr5_4:41748600-41748619 Msa0851470:intron 55.0%
CCCTGAGAATCCCATCATGG+AGG - chr5_4:41748656-41748675 Msa0851470:intron 55.0%
ATCCCATCATGGAGGAGCTG+AGG - chr5_4:41748664-41748683 Msa0851470:intron 55.0%
! GGAAACGTGCTGATGCTGAC+AGG - chr5_4:41748685-41748704 Msa0851470:intron 55.0%
TGCTGACATGCCACCATTGG+AGG - chr5_4:41748863-41748882 Msa0851470:intron 55.0%
GCATCAGCTTCCTCCAATGG+TGG + chr5_4:41748876-41748895 None:intergenic 55.0%
GGAAGCTGATGCTGATGCAG+AGG - chr5_4:41748884-41748903 Msa0851470:intron 55.0%
TGTGGGAGTCCCAAGCTGGT+GGG - chr5_4:41747275-41747294 Msa0851470:CDS 60.0%
GGAACGCCGTCTGAAGGACT+TGG - chr5_4:41747393-41747412 Msa0851470:CDS 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG - chr5_4:41747274-41747293 Msa0851470:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 41745906 41749200 41745906 ID=Msa0851470;Name=Msa0851470
chr5_4 mRNA 41745906 41749200 41745906 ID=Msa0851470-mRNA-1;Parent=Msa0851470;Name=Msa0851470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|3|268|699
chr5_4 exon 41745906 41748008 41745906 ID=Msa0851470-mRNA-1:exon:13245;Parent=Msa0851470-mRNA-1
chr5_4 exon 41748113 41748254 41748113 ID=Msa0851470-mRNA-1:exon:13244;Parent=Msa0851470-mRNA-1
chr5_4 exon 41748989 41749200 41748989 ID=Msa0851470-mRNA-1:exon:13243;Parent=Msa0851470-mRNA-1
chr5_4 five_prime_UTR 41749112 41749200 41749112 ID=Msa0851470-mRNA-1:five_prime_utr;Parent=Msa0851470-mRNA-1
chr5_4 CDS 41748989 41749111 41748989 ID=Msa0851470-mRNA-1:cds;Parent=Msa0851470-mRNA-1
chr5_4 CDS 41748113 41748254 41748113 ID=Msa0851470-mRNA-1:cds;Parent=Msa0851470-mRNA-1
chr5_4 CDS 41746174 41748008 41746174 ID=Msa0851470-mRNA-1:cds;Parent=Msa0851470-mRNA-1
chr5_4 three_prime_UTR 41745906 41746173 41745906 ID=Msa0851470-mRNA-1:three_prime_utr;Parent=Msa0851470-mRNA-1
Gene Sequence

>Msa0851470

ATGGCGGAACAAGAGACGTTCGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAATACTTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGCTGTTCATTCACATTATTCCTGACAAGACCAACAACACTTTGACTATCATTGATAGTGGCATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCTATAGCTGCTGGTGCTGATGTGAGTATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCTGAGAAGGTTATTGTTACCACCAAGCACAATGATGACGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTTACTGTGACCAGGGATACTACTGGTGAAGCTCTTGGTAGGGGAACTAAAATAACTCTCATCCTAAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGAACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGACGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCAGAGGAGATTACAAAGGATGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTTAAGGCTGTTCTCTTTGTGCCCAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGTTGATGCCTGAGTATCTTAGCTTTGTTAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAGATGCTTCAACAGAACAAGATCCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGTCTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGACTACAACAAGTTTTATGAGGCTTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACTAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCAATTGATGAGTATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTTTCTGACCGAGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAAGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCTGAGAATCCCATCATGGAGGAGCTGAGGAAACGTGCTGATGCTGACAGGAATGACAAATCTGTGAAGGATCTTGTGCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA

Protein sequence

>Msa0851470

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDENEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*