Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0075640 | A0A072VKN5 | 81.579 | 38 | 7 | 0 | 1 | 38 | 201 | 238 | 4.50e-12 | 71.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0075640 | 0.830514 | 2.814102e-55 | -8.615850e-47 |
| Msa0075640 | Msa0218810 | 0.815693 | 8.110348e-52 | -8.615850e-47 |
| Msa0075640 | Msa0321310 | 0.804312 | 2.294226e-49 | -8.615850e-47 |
| Msa0075640 | Msa0495330 | 0.804872 | 1.753190e-49 | -8.615850e-47 |
| Msa0075640 | Msa0731940 | 0.802647 | 5.079968e-49 | -8.615850e-47 |
| Msa0075640 | Msa0735170 | 0.803387 | 3.571193e-49 | -8.615850e-47 |
| Msa0075640 | Msa0753640 | 0.802578 | 5.248284e-49 | -8.615850e-47 |
| Msa0075640 | Msa0768290 | 0.812650 | 3.809472e-51 | -8.615850e-47 |
| Msa0075640 | Msa0934890 | 0.829023 | 6.490239e-55 | -8.615850e-47 |
| Msa0075640 | Msa1121490 | 0.820868 | 5.463497e-53 | -8.615850e-47 |
| Msa0075640 | Msa1137570 | 0.831164 | 1.948981e-55 | -8.615850e-47 |
| Msa0075640 | Msa1193290 | 0.807483 | 4.944398e-50 | -8.615850e-47 |
| Msa0075640 | Msa1213140 | 0.801893 | 7.262473e-49 | -8.615850e-47 |
| Msa0075640 | Msa1272680 | 0.806734 | 7.125290e-50 | -8.615850e-47 |
| Msa0075640 | Msa1284680 | 0.800557 | 1.363251e-48 | -8.615850e-47 |
| Msa0075640 | Msa1353470 | 0.841062 | 5.965609e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGCCGCCGTGTTAC+CGG | 0.281863 | 1_2:-51068753 | Msa0075640:CDS |
| CTGCTTGTGGAGGGAGTTGT+TGG | 0.313749 | 1_2:-51068427 | Msa0075640:CDS |
| CAAATTTCGAAGGAATTTGA+TGG | 0.355205 | 1_2:+51069724 | Msa0075650:CDS |
| GTTGAGATCTGCAGGCTTCA+AGG | 0.393012 | 1_2:-51068503 | Msa0075640:CDS |
| CTCAACATGGATTTGCATGC+AGG | 0.413957 | 1_2:+51069686 | Msa0075650:CDS |
| GGATTGTAACTTGTTGTGTT+TGG | 0.421865 | 1_2:-51068563 | Msa0075640:CDS |
| CCAGATCTGTTGAGATCTGC+AGG | 0.438638 | 1_2:-51068511 | Msa0075640:CDS |
| AGCTTTATGCTTGCTGCTTG+TGG | 0.443678 | 1_2:-51068440 | Msa0075640:CDS |
| CCTGCAGATCTCAACAGATC+TGG | 0.446379 | 1_2:+51068511 | None:intergenic |
| ACCGGCGAGCAACACACAAC+CGG | 0.477495 | 1_2:+51068734 | None:intergenic |
| TTGTAACTTGTTGTGTTTGG+TGG | 0.502350 | 1_2:-51068560 | Msa0075640:CDS |
| CAACTTGTCCGCTTACACTC+TGG | 0.505366 | 1_2:-51068480 | Msa0075640:CDS |
| TCAATTTGTTACCGTGTTGG+CGG | 0.514572 | 1_2:-51068400 | Msa0075640:CDS |
| TTATGCTTGCTGCTTGTGGA+GGG | 0.522082 | 1_2:-51068436 | Msa0075640:CDS |
| ACCGGTTGTGTGTTGCTCGC+CGG | 0.522583 | 1_2:-51068735 | Msa0075640:intron |
| ACTTCAATTTGTTACCGTGT+TGG | 0.522878 | 1_2:-51068403 | Msa0075640:CDS |
| TTTATGCTTGCTGCTTGTGG+AGG | 0.527127 | 1_2:-51068437 | Msa0075640:CDS |
| GCAAGATGAACAAATTTCGA+AGG | 0.533303 | 1_2:+51069714 | Msa0075650:CDS |
| GAAATTTGTTCATCTTGCAA+AGG | 0.539307 | 1_2:-51069709 | Msa0075640:CDS |
| TCGACGAACCAGAGTGTAAG+CGG | 0.602020 | 1_2:+51068472 | None:intergenic |
| GCAACACACAACCGGTAACA+CGG | 0.606222 | 1_2:+51068742 | None:intergenic |
| TTGATGGAGTACCACGTGGA+AGG | 0.609777 | 1_2:-51069762 | Msa0075640:CDS |
| CACGTTAGAACTCAGATCGT+GGG | 0.614779 | 1_2:+51068588 | None:intergenic |
| CGATCTGAGTTCTAACGTGT+CGG | 0.636588 | 1_2:-51068584 | Msa0075640:CDS |
| ACACGTTAGAACTCAGATCG+TGG | 0.640878 | 1_2:+51068587 | None:intergenic |
| GAATGGATTGACCGCCAACA+CGG | 0.645034 | 1_2:+51068389 | None:intergenic |
| TTGTTGCAGCTCCTTCCACG+TGG | 0.686931 | 1_2:+51069751 | Msa0075650:CDS |
| GGCTTTGATGGAGTACCACG+TGG | 0.755666 | 1_2:-51069766 | Msa0075640:CDS |
| ACACACAACCGGTAACACGG+CGG | 0.763654 | 1_2:+51068745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATACAAATTAAACCTATA+TGG | + | chr1_2:51068564-51068583 | None:intergenic | 15.0% |
| !! | TTAATGTAATGTAATTACTT+TGG | - | chr1_2:51068581-51068600 | Msa0075640:CDS | 15.0% |
| !! | CAAAATGTTATACAATAAAA+TGG | + | chr1_2:51068948-51068967 | None:intergenic | 15.0% |
| !!! | TATTTATTTTGACATTCATT+TGG | - | chr1_2:51069019-51069038 | Msa0075640:intron | 15.0% |
| !!! | TAATATTAATTTTTGAGTAC+TGG | - | chr1_2:51069213-51069232 | Msa0075640:intron | 15.0% |
| !! | TAATACAAATTAAACCTATA+TGG | + | chr1_2:51068564-51068583 | None:intergenic | 15.0% |
| !! | TTAATGTAATGTAATTACTT+TGG | - | chr1_2:51068581-51068600 | Msa0075640:CDS | 15.0% |
| !! | CAAAATGTTATACAATAAAA+TGG | + | chr1_2:51068948-51068967 | None:intergenic | 15.0% |
| !!! | TATTTATTTTGACATTCATT+TGG | - | chr1_2:51069019-51069038 | Msa0075640:intron | 15.0% |
| !!! | TAATATTAATTTTTGAGTAC+TGG | - | chr1_2:51069213-51069232 | Msa0075640:intron | 15.0% |
| !! | ATTATATGAATAAGCCATAT+AGG | - | chr1_2:51068547-51068566 | Msa0075640:CDS | 20.0% |
| !! | TTGACTAATTGTAATTCTTA+TGG | - | chr1_2:51068793-51068812 | Msa0075640:intron | 20.0% |
| !! | ACAATAAAATGGATAATCAA+CGG | + | chr1_2:51068937-51068956 | None:intergenic | 20.0% |
| !! | GAAGAGAATCATAAAATATT+AGG | + | chr1_2:51069117-51069136 | None:intergenic | 20.0% |
| !! | TTGAAAATGAAATGATGAAT+AGG | + | chr1_2:51069143-51069162 | None:intergenic | 20.0% |
| !! | ATATTTCATAAAATGTTCGT+AGG | + | chr1_2:51069267-51069286 | None:intergenic | 20.0% |
| !!! | ATTATTCTCCAATTATTTCT+CGG | - | chr1_2:51069299-51069318 | Msa0075640:intron | 20.0% |
| !! | ATTATATGAATAAGCCATAT+AGG | - | chr1_2:51068547-51068566 | Msa0075640:CDS | 20.0% |
| !! | TTGACTAATTGTAATTCTTA+TGG | - | chr1_2:51068793-51068812 | Msa0075640:intron | 20.0% |
| !! | ACAATAAAATGGATAATCAA+CGG | + | chr1_2:51068937-51068956 | None:intergenic | 20.0% |
| !! | GAAGAGAATCATAAAATATT+AGG | + | chr1_2:51069117-51069136 | None:intergenic | 20.0% |
| !! | TTGAAAATGAAATGATGAAT+AGG | + | chr1_2:51069143-51069162 | None:intergenic | 20.0% |
| !! | ATATTTCATAAAATGTTCGT+AGG | + | chr1_2:51069267-51069286 | None:intergenic | 20.0% |
| !!! | ATTATTCTCCAATTATTTCT+CGG | - | chr1_2:51069299-51069318 | Msa0075640:intron | 20.0% |
| ! | CTTATTCATATAATAACAGG+AGG | + | chr1_2:51068541-51068560 | None:intergenic | 25.0% |
| ! | TGGCTTATTCATATAATAAC+AGG | + | chr1_2:51068544-51068563 | None:intergenic | 25.0% |
| ! | TCCTAAAGATATCATCAATA+AGG | + | chr1_2:51068642-51068661 | None:intergenic | 25.0% |
| ! | ACTTGTATTTCATGCATATA+TGG | + | chr1_2:51068755-51068774 | None:intergenic | 25.0% |
| ! | AATAAAATGGATAATCAACG+GGG | + | chr1_2:51068935-51068954 | None:intergenic | 25.0% |
| ! | CAATAAAATGGATAATCAAC+GGG | + | chr1_2:51068936-51068955 | None:intergenic | 25.0% |
| ! | TTTGCATGAAATGTAGTAAA+AGG | + | chr1_2:51069166-51069185 | None:intergenic | 25.0% |
| ! | TATATTTGCCGAGAAATAAT+TGG | + | chr1_2:51069310-51069329 | None:intergenic | 25.0% |
| ! | TACCATTATATTAGTACGAA+AGG | - | chr1_2:51069337-51069356 | Msa0075640:intron | 25.0% |
| ! | ACCATTATATTAGTACGAAA+GGG | - | chr1_2:51069338-51069357 | Msa0075640:intron | 25.0% |
| ! | CTTATTCATATAATAACAGG+AGG | + | chr1_2:51068541-51068560 | None:intergenic | 25.0% |
| ! | TGGCTTATTCATATAATAAC+AGG | + | chr1_2:51068544-51068563 | None:intergenic | 25.0% |
| ! | TCCTAAAGATATCATCAATA+AGG | + | chr1_2:51068642-51068661 | None:intergenic | 25.0% |
| ! | ACTTGTATTTCATGCATATA+TGG | + | chr1_2:51068755-51068774 | None:intergenic | 25.0% |
| ! | AATAAAATGGATAATCAACG+GGG | + | chr1_2:51068935-51068954 | None:intergenic | 25.0% |
| ! | CAATAAAATGGATAATCAAC+GGG | + | chr1_2:51068936-51068955 | None:intergenic | 25.0% |
| ! | TTTGCATGAAATGTAGTAAA+AGG | + | chr1_2:51069166-51069185 | None:intergenic | 25.0% |
| ! | TATATTTGCCGAGAAATAAT+TGG | + | chr1_2:51069310-51069329 | None:intergenic | 25.0% |
| ! | TACCATTATATTAGTACGAA+AGG | - | chr1_2:51069337-51069356 | Msa0075640:intron | 25.0% |
| ! | ACCATTATATTAGTACGAAA+GGG | - | chr1_2:51069338-51069357 | Msa0075640:intron | 25.0% |
| CAAATTTCGAAGGAATTTGA+TGG | + | chr1_2:51068431-51068450 | None:intergenic | 30.0% | |
| ! | GAAATTTGTTCATCTTGCAA+AGG | - | chr1_2:51068443-51068462 | Msa0075640:CDS | 30.0% |
| ! | AGTCATCATTTTCTTCATTC+TGG | + | chr1_2:51068501-51068520 | None:intergenic | 30.0% |
| ! | TAACAGGAGGATTCTTTTTA+CGG | + | chr1_2:51068528-51068547 | None:intergenic | 30.0% |
| CAATAAGGCAGAAAATTAGA+AGG | + | chr1_2:51068627-51068646 | None:intergenic | 30.0% | |
| ! | GCCTTATTGATGATATCTTT+AGG | - | chr1_2:51068638-51068657 | Msa0075640:intron | 30.0% |
| !!! | AGGACAAGTTTTTTTGCTAT+AGG | - | chr1_2:51068658-51068677 | Msa0075640:intron | 30.0% |
| GGAACAAGCAAACATATATA+TGG | - | chr1_2:51068714-51068733 | Msa0075640:intron | 30.0% | |
| ! | TTGTTTTCGTGTGTATAGTT+TGG | + | chr1_2:51068865-51068884 | None:intergenic | 30.0% |
| ACTAGTTATTAGTTAGTGCA+CGG | - | chr1_2:51068970-51068989 | Msa0075640:intron | 30.0% | |
| ACCCTTTCGTACTAATATAA+TGG | + | chr1_2:51069342-51069361 | None:intergenic | 30.0% | |
| !!! | CTATAACTTGCCTTTTTTTG+TGG | - | chr1_2:51069531-51069550 | Msa0075640:intron | 30.0% |
| ATGAGTCAAACCACAAAAAA+AGG | + | chr1_2:51069544-51069563 | None:intergenic | 30.0% | |
| CAAATTTCGAAGGAATTTGA+TGG | + | chr1_2:51068431-51068450 | None:intergenic | 30.0% | |
| ! | GAAATTTGTTCATCTTGCAA+AGG | - | chr1_2:51068443-51068462 | Msa0075640:CDS | 30.0% |
| ! | AGTCATCATTTTCTTCATTC+TGG | + | chr1_2:51068501-51068520 | None:intergenic | 30.0% |
| ! | TAACAGGAGGATTCTTTTTA+CGG | + | chr1_2:51068528-51068547 | None:intergenic | 30.0% |
| CAATAAGGCAGAAAATTAGA+AGG | + | chr1_2:51068627-51068646 | None:intergenic | 30.0% | |
| ! | GCCTTATTGATGATATCTTT+AGG | - | chr1_2:51068638-51068657 | Msa0075640:intron | 30.0% |
| !!! | AGGACAAGTTTTTTTGCTAT+AGG | - | chr1_2:51068658-51068677 | Msa0075640:intron | 30.0% |
| GGAACAAGCAAACATATATA+TGG | - | chr1_2:51068714-51068733 | Msa0075640:intron | 30.0% | |
| ! | TTGTTTTCGTGTGTATAGTT+TGG | + | chr1_2:51068865-51068884 | None:intergenic | 30.0% |
| ACTAGTTATTAGTTAGTGCA+CGG | - | chr1_2:51068970-51068989 | Msa0075640:intron | 30.0% | |
| ACCCTTTCGTACTAATATAA+TGG | + | chr1_2:51069342-51069361 | None:intergenic | 30.0% | |
| !!! | CTATAACTTGCCTTTTTTTG+TGG | - | chr1_2:51069531-51069550 | Msa0075640:intron | 30.0% |
| ATGAGTCAAACCACAAAAAA+AGG | + | chr1_2:51069544-51069563 | None:intergenic | 30.0% | |
| GCAAGATGAACAAATTTCGA+AGG | + | chr1_2:51068441-51068460 | None:intergenic | 35.0% | |
| ! | AAGACGGGAATGATATGTTT+TGG | - | chr1_2:51068693-51068712 | Msa0075640:intron | 35.0% |
| !! | ATTTATCCGATTTTGGCACA+GGG | + | chr1_2:51069045-51069064 | None:intergenic | 35.0% |
| TCTTGACTAGAAAATACTCC+CGG | + | chr1_2:51069086-51069105 | None:intergenic | 35.0% | |
| ! | CGAAAGGGTTTGTTTATTCT+CGG | - | chr1_2:51069353-51069372 | Msa0075640:intron | 35.0% |
| ACCAACAAACAAAACACAAC+CGG | + | chr1_2:51069439-51069458 | None:intergenic | 35.0% | |
| AACCAAACCGTTGAAAACAT+CGG | + | chr1_2:51069464-51069483 | None:intergenic | 35.0% | |
| !!! | GTTGCTTTTGTTACAGAGAT+TGG | - | chr1_2:51069503-51069522 | Msa0075640:intron | 35.0% |
| ! | CTTTTGTTACAGAGATTGGA+TGG | - | chr1_2:51069507-51069526 | Msa0075640:intron | 35.0% |
| !! | GGATTGTAACTTGTTGTGTT+TGG | - | chr1_2:51069589-51069608 | Msa0075640:intron | 35.0% |
| !! | TTGTAACTTGTTGTGTTTGG+TGG | - | chr1_2:51069592-51069611 | Msa0075640:intron | 35.0% |
| !! | ACTTCAATTTGTTACCGTGT+TGG | - | chr1_2:51069749-51069768 | Msa0075640:CDS | 35.0% |
| GCAAGATGAACAAATTTCGA+AGG | + | chr1_2:51068441-51068460 | None:intergenic | 35.0% | |
| ! | AAGACGGGAATGATATGTTT+TGG | - | chr1_2:51068693-51068712 | Msa0075640:intron | 35.0% |
| !! | ATTTATCCGATTTTGGCACA+GGG | + | chr1_2:51069045-51069064 | None:intergenic | 35.0% |
| TCTTGACTAGAAAATACTCC+CGG | + | chr1_2:51069086-51069105 | None:intergenic | 35.0% | |
| ! | CGAAAGGGTTTGTTTATTCT+CGG | - | chr1_2:51069353-51069372 | Msa0075640:intron | 35.0% |
| ACCAACAAACAAAACACAAC+CGG | + | chr1_2:51069439-51069458 | None:intergenic | 35.0% | |
| AACCAAACCGTTGAAAACAT+CGG | + | chr1_2:51069464-51069483 | None:intergenic | 35.0% | |
| !!! | GTTGCTTTTGTTACAGAGAT+TGG | - | chr1_2:51069503-51069522 | Msa0075640:intron | 35.0% |
| ! | CTTTTGTTACAGAGATTGGA+TGG | - | chr1_2:51069507-51069526 | Msa0075640:intron | 35.0% |
| !! | GGATTGTAACTTGTTGTGTT+TGG | - | chr1_2:51069589-51069608 | Msa0075640:intron | 35.0% |
| !! | TTGTAACTTGTTGTGTTTGG+TGG | - | chr1_2:51069592-51069611 | Msa0075640:intron | 35.0% |
| !! | ACTTCAATTTGTTACCGTGT+TGG | - | chr1_2:51069749-51069768 | Msa0075640:CDS | 35.0% |
| CTGGTAGTTTCTTCTCAACA+TGG | + | chr1_2:51068482-51068501 | None:intergenic | 40.0% | |
| !! | TAGGTGCTGAGATTTGAAGA+CGG | - | chr1_2:51068677-51068696 | Msa0075640:intron | 40.0% |
| !! | CATTTATCCGATTTTGGCAC+AGG | + | chr1_2:51069046-51069065 | None:intergenic | 40.0% |
| CTGTGCCAAAATCGGATAAA+TGG | - | chr1_2:51069044-51069063 | Msa0075640:intron | 40.0% | |
| ! | GGTCTCCATTTATCCGATTT+TGG | + | chr1_2:51069052-51069071 | None:intergenic | 40.0% |
| ATACTCCCGGTGAATTGAAT+GGG | + | chr1_2:51069073-51069092 | None:intergenic | 40.0% | |
| AATACTCCCGGTGAATTGAA+TGG | + | chr1_2:51069074-51069093 | None:intergenic | 40.0% | |
| !!! | GGTTGTGTTTTGTTTGTTGG+TGG | - | chr1_2:51069438-51069457 | Msa0075640:intron | 40.0% |
| !! | TCAATTTGTTACCGTGTTGG+CGG | - | chr1_2:51069752-51069771 | Msa0075640:CDS | 40.0% |
| CTGGTAGTTTCTTCTCAACA+TGG | + | chr1_2:51068482-51068501 | None:intergenic | 40.0% | |
| !! | TAGGTGCTGAGATTTGAAGA+CGG | - | chr1_2:51068677-51068696 | Msa0075640:intron | 40.0% |
| !! | CATTTATCCGATTTTGGCAC+AGG | + | chr1_2:51069046-51069065 | None:intergenic | 40.0% |
| CTGTGCCAAAATCGGATAAA+TGG | - | chr1_2:51069044-51069063 | Msa0075640:intron | 40.0% | |
| ! | GGTCTCCATTTATCCGATTT+TGG | + | chr1_2:51069052-51069071 | None:intergenic | 40.0% |
| ATACTCCCGGTGAATTGAAT+GGG | + | chr1_2:51069073-51069092 | None:intergenic | 40.0% | |
| AATACTCCCGGTGAATTGAA+TGG | + | chr1_2:51069074-51069093 | None:intergenic | 40.0% | |
| !!! | GGTTGTGTTTTGTTTGTTGG+TGG | - | chr1_2:51069438-51069457 | Msa0075640:intron | 40.0% |
| !! | TCAATTTGTTACCGTGTTGG+CGG | - | chr1_2:51069752-51069771 | Msa0075640:CDS | 40.0% |
| CTCAACATGGATTTGCATGC+AGG | + | chr1_2:51068469-51068488 | None:intergenic | 45.0% | |
| !! | AGGTGCTGAGATTTGAAGAC+GGG | - | chr1_2:51068678-51068697 | Msa0075640:intron | 45.0% |
| ATTTGGCCCTGTGCCAAAAT+CGG | - | chr1_2:51069036-51069055 | Msa0075640:intron | 45.0% | |
| TGGAGACCCATTCAATTCAC+CGG | - | chr1_2:51069064-51069083 | Msa0075640:intron | 45.0% | |
| !!! | GCCGGTTGTGTTTTGTTTGT+TGG | - | chr1_2:51069435-51069454 | Msa0075640:intron | 45.0% |
| !! | TTGGTGGCCGATGTTTTCAA+CGG | - | chr1_2:51069454-51069473 | Msa0075640:intron | 45.0% |
| CACGTTAGAACTCAGATCGT+GGG | + | chr1_2:51069567-51069586 | None:intergenic | 45.0% | |
| ACACGTTAGAACTCAGATCG+TGG | + | chr1_2:51069568-51069587 | None:intergenic | 45.0% | |
| ! | CGATCTGAGTTCTAACGTGT+CGG | - | chr1_2:51069568-51069587 | Msa0075640:intron | 45.0% |
| ! | AGCTTTATGCTTGCTGCTTG+TGG | - | chr1_2:51069712-51069731 | Msa0075640:CDS | 45.0% |
| ! | TTTATGCTTGCTGCTTGTGG+AGG | - | chr1_2:51069715-51069734 | Msa0075640:CDS | 45.0% |
| ! | TTATGCTTGCTGCTTGTGGA+GGG | - | chr1_2:51069716-51069735 | Msa0075640:CDS | 45.0% |
| CTCAACATGGATTTGCATGC+AGG | + | chr1_2:51068469-51068488 | None:intergenic | 45.0% | |
| !! | AGGTGCTGAGATTTGAAGAC+GGG | - | chr1_2:51068678-51068697 | Msa0075640:intron | 45.0% |
| ATTTGGCCCTGTGCCAAAAT+CGG | - | chr1_2:51069036-51069055 | Msa0075640:intron | 45.0% | |
| TGGAGACCCATTCAATTCAC+CGG | - | chr1_2:51069064-51069083 | Msa0075640:intron | 45.0% | |
| !!! | GCCGGTTGTGTTTTGTTTGT+TGG | - | chr1_2:51069435-51069454 | Msa0075640:intron | 45.0% |
| !! | TTGGTGGCCGATGTTTTCAA+CGG | - | chr1_2:51069454-51069473 | Msa0075640:intron | 45.0% |
| CACGTTAGAACTCAGATCGT+GGG | + | chr1_2:51069567-51069586 | None:intergenic | 45.0% | |
| ACACGTTAGAACTCAGATCG+TGG | + | chr1_2:51069568-51069587 | None:intergenic | 45.0% | |
| ! | CGATCTGAGTTCTAACGTGT+CGG | - | chr1_2:51069568-51069587 | Msa0075640:intron | 45.0% |
| ! | AGCTTTATGCTTGCTGCTTG+TGG | - | chr1_2:51069712-51069731 | Msa0075640:CDS | 45.0% |
| ! | TTTATGCTTGCTGCTTGTGG+AGG | - | chr1_2:51069715-51069734 | Msa0075640:CDS | 45.0% |
| ! | TTATGCTTGCTGCTTGTGGA+GGG | - | chr1_2:51069716-51069735 | Msa0075640:CDS | 45.0% |
| ! | TTGATGGAGTACCACGTGGA+AGG | - | chr1_2:51068390-51068409 | Msa0075640:CDS | 50.0% |
| GGAGACCCATTCAATTCACC+GGG | - | chr1_2:51069065-51069084 | Msa0075640:intron | 50.0% | |
| GCAACACACAACCGGTAACA+CGG | + | chr1_2:51069413-51069432 | None:intergenic | 50.0% | |
| ! | GGCCGATGTTTTCAACGGTT+TGG | - | chr1_2:51069459-51069478 | Msa0075640:intron | 50.0% |
| CCTGCAGATCTCAACAGATC+TGG | + | chr1_2:51069644-51069663 | Msa0075650:CDS | 50.0% | |
| CCAGATCTGTTGAGATCTGC+AGG | - | chr1_2:51069641-51069660 | Msa0075640:intron | 50.0% | |
| GTTGAGATCTGCAGGCTTCA+AGG | - | chr1_2:51069649-51069668 | Msa0075640:intron | 50.0% | |
| CAACTTGTCCGCTTACACTC+TGG | - | chr1_2:51069672-51069691 | Msa0075640:intron | 50.0% | |
| TCGACGAACCAGAGTGTAAG+CGG | + | chr1_2:51069683-51069702 | Msa0075650:CDS | 50.0% | |
| !! | GAATGGATTGACCGCCAACA+CGG | + | chr1_2:51069766-51069785 | Msa0075650:CDS | 50.0% |
| ! | TTGATGGAGTACCACGTGGA+AGG | - | chr1_2:51068390-51068409 | Msa0075640:CDS | 50.0% |
| GGAGACCCATTCAATTCACC+GGG | - | chr1_2:51069065-51069084 | Msa0075640:intron | 50.0% | |
| GCAACACACAACCGGTAACA+CGG | + | chr1_2:51069413-51069432 | None:intergenic | 50.0% | |
| ! | GGCCGATGTTTTCAACGGTT+TGG | - | chr1_2:51069459-51069478 | Msa0075640:intron | 50.0% |
| CCTGCAGATCTCAACAGATC+TGG | + | chr1_2:51069644-51069663 | Msa0075650:CDS | 50.0% | |
| CCAGATCTGTTGAGATCTGC+AGG | - | chr1_2:51069641-51069660 | Msa0075640:intron | 50.0% | |
| GTTGAGATCTGCAGGCTTCA+AGG | - | chr1_2:51069649-51069668 | Msa0075640:intron | 50.0% | |
| CAACTTGTCCGCTTACACTC+TGG | - | chr1_2:51069672-51069691 | Msa0075640:intron | 50.0% | |
| TCGACGAACCAGAGTGTAAG+CGG | + | chr1_2:51069683-51069702 | Msa0075650:CDS | 50.0% | |
| !! | GAATGGATTGACCGCCAACA+CGG | + | chr1_2:51069766-51069785 | Msa0075650:CDS | 50.0% |
| ! | GGCTTTGATGGAGTACCACG+TGG | - | chr1_2:51068386-51068405 | Msa0075640:CDS | 55.0% |
| TTGTTGCAGCTCCTTCCACG+TGG | + | chr1_2:51068404-51068423 | None:intergenic | 55.0% | |
| ACACACAACCGGTAACACGG+CGG | + | chr1_2:51069410-51069429 | None:intergenic | 55.0% | |
| CTGCTTGTGGAGGGAGTTGT+TGG | - | chr1_2:51069725-51069744 | Msa0075640:CDS | 55.0% | |
| ! | GGCTTTGATGGAGTACCACG+TGG | - | chr1_2:51068386-51068405 | Msa0075640:CDS | 55.0% |
| TTGTTGCAGCTCCTTCCACG+TGG | + | chr1_2:51068404-51068423 | None:intergenic | 55.0% | |
| ACACACAACCGGTAACACGG+CGG | + | chr1_2:51069410-51069429 | None:intergenic | 55.0% | |
| CTGCTTGTGGAGGGAGTTGT+TGG | - | chr1_2:51069725-51069744 | Msa0075640:CDS | 55.0% | |
| CTTCGTTGCCGCCGTGTTAC+CGG | - | chr1_2:51069399-51069418 | Msa0075640:intron | 60.0% | |
| ! | ACCGGTTGTGTGTTGCTCGC+CGG | - | chr1_2:51069417-51069436 | Msa0075640:intron | 60.0% |
| ACCGGCGAGCAACACACAAC+CGG | + | chr1_2:51069421-51069440 | None:intergenic | 60.0% | |
| CTTCGTTGCCGCCGTGTTAC+CGG | - | chr1_2:51069399-51069418 | Msa0075640:intron | 60.0% | |
| ! | ACCGGTTGTGTGTTGCTCGC+CGG | - | chr1_2:51069417-51069436 | Msa0075640:intron | 60.0% |
| ACCGGCGAGCAACACACAAC+CGG | + | chr1_2:51069421-51069440 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 51068384 | 51069790 | 51068384 | ID=Msa0075640;Name=Msa0075640 |
| chr1_2 | mRNA | 51068384 | 51069790 | 51068384 | ID=Msa0075640-mRNA-1;Parent=Msa0075640;Name=Msa0075640-mRNA-1;_AED=0.79;_eAED=0.79;_QI=0|0|0|0.33|1|1|3|0|136 |
| chr1_2 | exon | 51069692 | 51069790 | 51069692 | ID=Msa0075640-mRNA-1:exon:15724;Parent=Msa0075640-mRNA-1 |
| chr1_2 | exon | 51068736 | 51068775 | 51068736 | ID=Msa0075640-mRNA-1:exon:15723;Parent=Msa0075640-mRNA-1 |
| chr1_2 | exon | 51068384 | 51068655 | 51068384 | ID=Msa0075640-mRNA-1:exon:15722;Parent=Msa0075640-mRNA-1 |
| chr1_2 | CDS | 51069692 | 51069790 | 51069692 | ID=Msa0075640-mRNA-1:cds;Parent=Msa0075640-mRNA-1 |
| chr1_2 | CDS | 51068736 | 51068775 | 51068736 | ID=Msa0075640-mRNA-1:cds;Parent=Msa0075640-mRNA-1 |
| chr1_2 | CDS | 51068384 | 51068655 | 51068384 | ID=Msa0075640-mRNA-1:cds;Parent=Msa0075640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
