AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0495330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495330 MtrunA17_Chr3g0098611 99.320 147 1 0 1 147 1 147 1.05e-108 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495330 AT5G54855.1 67.123 146 48 0 1 146 1 146 8.97e-73 214

Find 46 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTCCCTAACGAAATATT+TGG 0.266747 3_4:+24470935 None:intergenic
TGATAGAAAATCATTGTAAA+TGG 0.285973 3_4:+24474854 Msa0495330:three_prime_UTR
GTTTGTGGTGATTCTTCTCT+TGG 0.332875 3_4:+24471203 Msa0495330:CDS
TCGTCTTGGTGGTGGTAGTT+CGG 0.336867 3_4:+24474563 Msa0495330:CDS
CGGCGAAGTTCTAAATTATC+AGG 0.338733 3_4:+24474431 Msa0495330:CDS
CGTCTTGGTGGTGGTAGTTC+GGG 0.342385 3_4:+24474564 Msa0495330:CDS
TGCATCTGATATATACTATA+CGG 0.372267 3_4:+24474672 Msa0495330:exon
TGTTAATCATGACTATTCAT+AGG 0.382659 3_4:-24474961 None:intergenic
CCTTCAAGAACATGATCTTC+AGG 0.398537 3_4:-24471227 None:intergenic
ATTTAGAACTTCGCCGGACT+TGG 0.414951 3_4:-24474424 None:intergenic
TTCAGTTACAATCATCCATC+GGG 0.416663 3_4:+24474594 Msa0495330:CDS
ATGTTTATGTAGGAAACAAT+AGG 0.431988 3_4:-24474995 None:intergenic
CCTGAAGATCATGTTCTTGA+AGG 0.449881 3_4:+24471227 Msa0495330:CDS
CATGAGCACTGCACTCGTCT+TGG 0.451233 3_4:+24474549 Msa0495330:CDS
ATTGATTGTATTGTTGATGA+TGG 0.465309 3_4:+24471121 Msa0495330:CDS
TATGAACACATGCAAATGAA+TGG 0.465890 3_4:+24474907 Msa0495330:three_prime_UTR
AATGAAGCAGAAGATGATAG+TGG 0.473190 3_4:+24471097 Msa0495330:CDS
TCAGGCATTTACAGATGCTA+AGG 0.492192 3_4:+24474449 Msa0495330:CDS
CAGTATGTTGGAACATTGAC+AGG 0.497172 3_4:-24474651 None:intergenic
GTTCTTTGCATAACCAAGTC+CGG 0.497448 3_4:+24474411 Msa0495330:CDS
CAAGACGAGTGCAGTGCTCA+TGG 0.501517 3_4:-24474548 None:intergenic
AATGCCCGAGAGTGATCGTT+GGG 0.504720 3_4:+24474494 Msa0495330:CDS
TGCATCCCAACGATCACTCT+CGG 0.507480 3_4:-24474499 None:intergenic
TTGAGTGTAAGTGGTTGGAC+TGG 0.520329 3_4:+24471152 Msa0495330:CDS
AGAGTTGTTTGTGATGTTTG+TGG 0.528736 3_4:+24471188 Msa0495330:CDS
TGCTCATGGAAACTACTGAT+TGG 0.530403 3_4:-24474534 None:intergenic
CAGGCATTTACAGATGCTAA+GGG 0.533023 3_4:+24474450 Msa0495330:CDS
GAGCACTGCACTCGTCTTGG+TGG 0.534296 3_4:+24474552 Msa0495330:CDS
CTGATAATTTAGAACTTCGC+CGG 0.538086 3_4:-24474430 None:intergenic
CACTGCACTCGTCTTGGTGG+TGG 0.544640 3_4:+24474555 Msa0495330:CDS
ATTCAGTTACAATCATCCAT+CGG 0.553429 3_4:+24474593 Msa0495330:CDS
CAGTGTTATTCGAGAAAGTG+TGG 0.555044 3_4:+24471038 Msa0495330:five_prime_UTR
GATGATTAACCTATCTCAGA+TGG 0.559081 3_4:-24474882 None:intergenic
GCATCCCAACGATCACTCTC+GGG 0.561902 3_4:-24474498 None:intergenic
ATGGTATTGCCATCTGAGAT+AGG 0.569736 3_4:+24474873 Msa0495330:three_prime_UTR
CAATGCCCGAGAGTGATCGT+TGG 0.575843 3_4:+24474493 Msa0495330:CDS
ATATATCAGATGCAGTATGT+TGG 0.578522 3_4:-24474663 None:intergenic
AGTGATTCAGCGAGTGTCGG+TGG 0.585112 3_4:+24470979 Msa0495330:five_prime_UTR
CTCAGTGATTCAGCGAGTGT+CGG 0.594439 3_4:+24470976 Msa0495330:five_prime_UTR
GGTTGGACTGGTGAAATTCG+TGG 0.595778 3_4:+24471164 Msa0495330:CDS
ATGTTGGAACATTGACAGGT+TGG 0.603546 3_4:-24474647 None:intergenic
ATTGACAGGTTGGTAAACAA+AGG 0.608179 3_4:-24474637 None:intergenic
TAATCATGACTATTCATAGG+TGG 0.664580 3_4:-24474958 None:intergenic
ACAGCATGTGAGTACCCCGA+TGG 0.701199 3_4:-24474609 None:intergenic
AGGCATTTACAGATGCTAAG+GGG 0.710498 3_4:+24474451 Msa0495330:CDS
TCAGTTACAATCATCCATCG+GGG 0.761110 3_4:+24474595 Msa0495330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCATTTATGAATAAAT+AGG + chr3_4:24471596-24471615 Msa0495330:intron 10.0%
!!! TTTTCATTTATGAATAAATA+GGG + chr3_4:24471597-24471616 Msa0495330:intron 10.0%
!! AAAATAAAATAATATTGAGT+CGG + chr3_4:24472939-24472958 Msa0495330:intron 10.0%
!!! CATTTTAAAAATTAGTAAAT+CGG + chr3_4:24473518-24473537 Msa0495330:intron 10.0%
!!! ATTTTAAAAATTAGTAAATC+GGG + chr3_4:24473519-24473538 Msa0495330:intron 10.0%
!! CAAATTATTATTCTTCTATT+GGG - chr3_4:24472049-24472068 None:intergenic 15.0%
!!! ATATTTTAAGGTTATTCTTA+GGG - chr3_4:24472889-24472908 None:intergenic 15.0%
!!! ATATTTTTCAACTTCTTAAA+TGG - chr3_4:24473091-24473110 None:intergenic 15.0%
!! TAGATACCAATAATAATTTA+AGG + chr3_4:24473929-24473948 Msa0495330:intron 15.0%
!! CTATTTCCTTAAATTATTAT+TGG - chr3_4:24473938-24473957 None:intergenic 15.0%
!! ATTCATGTTAAAATAAATCT+GGG - chr3_4:24474311-24474330 None:intergenic 15.0%
!! TATTCATGTTAAAATAAATC+TGG - chr3_4:24474312-24474331 None:intergenic 15.0%
!!! TTTTGATTGAGTTTATGAAA+TGG + chr3_4:24471329-24471348 Msa0495330:intron 20.0%
!! TTTGATTGAGTTTATGAAAT+GGG + chr3_4:24471330-24471349 Msa0495330:intron 20.0%
!! TTGTGAATTGTATATGATAT+TGG + chr3_4:24471357-24471376 Msa0495330:intron 20.0%
!! CAATTTACTCAAATTATTAC+CGG - chr3_4:24471498-24471517 None:intergenic 20.0%
!! GCAAATTATTATTCTTCTAT+TGG - chr3_4:24472050-24472069 None:intergenic 20.0%
!!! ATAGAAGAATAATAATTTGC+AGG + chr3_4:24472050-24472069 Msa0495330:intron 20.0%
!!! TAGAAGAATAATAATTTGCA+GGG + chr3_4:24472051-24472070 Msa0495330:intron 20.0%
!!! GATATTTTAAGGTTATTCTT+AGG - chr3_4:24472890-24472909 None:intergenic 20.0%
!! TTTAAACAATGATACAACAA+AGG + chr3_4:24473818-24473837 Msa0495330:intron 20.0%
!!! AAAAACCATTTCAAACTTTT+TGG + chr3_4:24474264-24474283 Msa0495330:intron 20.0%
!! TTAAACCAAAAAGTTTGAAA+TGG - chr3_4:24474272-24474291 None:intergenic 20.0%
!! TTCATGTTAAAATAAATCTG+GGG - chr3_4:24474310-24474329 None:intergenic 20.0%
!!! TTATTTTATCAGATTGCATA+TGG + chr3_4:24474818-24474837 Msa0495330:three_prime_UTR 20.0%
!! TGATAGAAAATCATTGTAAA+TGG + chr3_4:24474854-24474873 Msa0495330:three_prime_UTR 20.0%
!! ATTGATTGTATTGTTGATGA+TGG + chr3_4:24471121-24471140 Msa0495330:CDS 25.0%
! TATTGGTAGAGTTTATGAAA+TGG + chr3_4:24471374-24471393 Msa0495330:intron 25.0%
! ATTGGTAGAGTTTATGAAAT+GGG + chr3_4:24471375-24471394 Msa0495330:intron 25.0%
!!! CAATTTGTTGGAGAATTATA+AGG - chr3_4:24471443-24471462 None:intergenic 25.0%
! ATATGTTACGAACAATTTGT+TGG - chr3_4:24471455-24471474 None:intergenic 25.0%
! AACAAATTGTTCGTAACATA+TGG + chr3_4:24471454-24471473 Msa0495330:intron 25.0%
! TATAATCACCTCACTTTATT+AGG + chr3_4:24471711-24471730 Msa0495330:intron 25.0%
! CTTCTGTTGAAAATTTACTT+TGG - chr3_4:24471765-24471784 None:intergenic 25.0%
!! TTGTTACTCCATAAAGATTT+TGG + chr3_4:24471807-24471826 Msa0495330:intron 25.0%
!! AGAAGAATAATAATTTGCAG+GGG + chr3_4:24472052-24472071 Msa0495330:intron 25.0%
! AAATTCATTGTTTACATGCA+GGG - chr3_4:24472107-24472126 None:intergenic 25.0%
! TAAATAGTGTATAAGAGAGA+GGG - chr3_4:24472362-24472381 None:intergenic 25.0%
! ATCCATTATTGCTTAAATAG+CGG + chr3_4:24472837-24472856 Msa0495330:intron 25.0%
! ATGAGGATAATGATTATGTT+AGG + chr3_4:24473127-24473146 Msa0495330:intron 25.0%
! TAATGATTATGTTAGGAGAT+AGG + chr3_4:24473134-24473153 Msa0495330:intron 25.0%
! AATGATTATGTTAGGAGATA+GGG + chr3_4:24473135-24473154 Msa0495330:intron 25.0%
! ATTAGTTGTACTGAACTATT+TGG + chr3_4:24473206-24473225 Msa0495330:intron 25.0%
!!! TCACTTCTAATTTTTGTTTC+TGG + chr3_4:24473244-24473263 Msa0495330:intron 25.0%
!!! TGAGATTTTGAGTTTTATGT+CGG + chr3_4:24473324-24473343 Msa0495330:intron 25.0%
! GTTAATGTTTATTTCACAAG+TGG + chr3_4:24473484-24473503 Msa0495330:intron 25.0%
! CATACAAATGAGTCATTATT+AGG - chr3_4:24473589-24473608 None:intergenic 25.0%
!! ATTTGCGTATTTAACCATTT+TGG + chr3_4:24473738-24473757 Msa0495330:intron 25.0%
! CAAAGAATGAGATATTGTAA+TGG - chr3_4:24473779-24473798 None:intergenic 25.0%
! AATATCTCATTCTTTGAGTA+AGG + chr3_4:24473783-24473802 Msa0495330:intron 25.0%
! TTCCTATTAAAACAATGAAG+TGG + chr3_4:24474354-24474373 Msa0495330:intron 25.0%
!!! AACCACTTCATTGTTTTAAT+AGG - chr3_4:24474359-24474378 None:intergenic 25.0%
! TGCATCTGATATATACTATA+CGG + chr3_4:24474672-24474691 Msa0495330:exon 25.0%
!! TTTCATGCTCTAATTTTACT+AGG - chr3_4:24474797-24474816 None:intergenic 25.0%
! TGTTAATCATGACTATTCAT+AGG - chr3_4:24474964-24474983 None:intergenic 25.0%
!!! TTTGGGTGTTTTTTGAGTTT+TGG + chr3_4:24471064-24471083 Msa0495330:five_prime_UTR 30.0%
!!! TGTTTTTTGAGTTTTGGCAA+TGG + chr3_4:24471070-24471089 Msa0495330:exon 30.0%
GTAACCAATTGAGTTTGTAT+TGG + chr3_4:24471530-24471549 Msa0495330:intron 30.0%
GTATCCAATACAAACTCAAT+TGG - chr3_4:24471537-24471556 None:intergenic 30.0%
! ATACCTTCAATTTGAAGTGT+CGG + chr3_4:24471553-24471572 Msa0495330:intron 30.0%
GAACTGAACCAAAATCTTTA+TGG - chr3_4:24471818-24471837 None:intergenic 30.0%
! ATAAGCAGATTCTTGCTATA+AGG + chr3_4:24471883-24471902 Msa0495330:intron 30.0%
! TAAGCAGATTCTTGCTATAA+GGG + chr3_4:24471884-24471903 Msa0495330:intron 30.0%
! GAAGAATAATAATTTGCAGG+GGG + chr3_4:24472053-24472072 Msa0495330:intron 30.0%
! AAGAATAATAATTTGCAGGG+GGG + chr3_4:24472054-24472073 Msa0495330:intron 30.0%
CAAATTCATTGTTTACATGC+AGG - chr3_4:24472108-24472127 None:intergenic 30.0%
CTGCATGTAAACAATGAATT+TGG + chr3_4:24472106-24472125 Msa0495330:intron 30.0%
GATAGTGCAGATTTCAAATT+CGG - chr3_4:24472249-24472268 None:intergenic 30.0%
GTAAATAGTGTATAAGAGAG+AGG - chr3_4:24472363-24472382 None:intergenic 30.0%
!! AGTTAGTTGTTTTCACTCTT+TGG + chr3_4:24472402-24472421 Msa0495330:intron 30.0%
TGAAATGGAAGGAATATGAT+TGG - chr3_4:24472477-24472496 None:intergenic 30.0%
! GTTTTGTCTTCACTACTATT+AGG - chr3_4:24472557-24472576 None:intergenic 30.0%
GTAGTGAAGACAAAACTTAT+TGG + chr3_4:24472561-24472580 Msa0495330:intron 30.0%
!!! GCATAAACCTTTTAAAACCT+TGG + chr3_4:24472677-24472696 Msa0495330:intron 30.0%
TATCATATCGTCTTTCATCA+AGG - chr3_4:24472767-24472786 None:intergenic 30.0%
TTCCGCTATTTAAGCAATAA+TGG - chr3_4:24472842-24472861 None:intergenic 30.0%
! TCAGCTCACATGATATTTTA+AGG - chr3_4:24472901-24472920 None:intergenic 30.0%
TTCACACTAAATAGAACTAC+CGG + chr3_4:24473181-24473200 Msa0495330:intron 30.0%
AGTTCAGTACAACTAATAAC+CGG - chr3_4:24473203-24473222 None:intergenic 30.0%
TACTTATATCAACCACTTTG+TGG + chr3_4:24473388-24473407 Msa0495330:intron 30.0%
CAAGACAGTGTGATTAATAA+CGG - chr3_4:24473457-24473476 None:intergenic 30.0%
TAAATGCTGCTAAAAGAACA+GGG - chr3_4:24473641-24473660 None:intergenic 30.0%
!! AGTATTGATTCTATGACTTG+TGG + chr3_4:24473660-24473679 Msa0495330:intron 30.0%
! GACTCTTGTCTTATTGTATT+TGG + chr3_4:24473699-24473718 Msa0495330:intron 30.0%
AATGGTTAAATACGCAAATG+TGG - chr3_4:24473737-24473756 None:intergenic 30.0%
!! AAATAGTCATCCTCTAGAAT+TGG + chr3_4:24473857-24473876 Msa0495330:intron 30.0%
ATGACTTAAACCAATTCTAG+AGG - chr3_4:24473870-24473889 None:intergenic 30.0%
TATATGTAGCATCAACACTT+AGG - chr3_4:24474038-24474057 None:intergenic 30.0%
!!! AACCCTTTTGCTATTATAGA+AGG + chr3_4:24474057-24474076 Msa0495330:intron 30.0%
!!! ACCCTTTTGCTATTATAGAA+GGG + chr3_4:24474058-24474077 Msa0495330:intron 30.0%
TCCCTTCTATAATAGCAAAA+GGG - chr3_4:24474062-24474081 None:intergenic 30.0%
TTCCCTTCTATAATAGCAAA+AGG - chr3_4:24474063-24474082 None:intergenic 30.0%
!!! TTTTGCTATTATAGAAGGGA+AGG + chr3_4:24474062-24474081 Msa0495330:intron 30.0%
ATCAGTTACAGATCTATTGT+AGG + chr3_4:24474131-24474150 Msa0495330:intron 30.0%
TGCAGTGTAACAAGATATTA+CGG - chr3_4:24474201-24474220 None:intergenic 30.0%
ATAACAGCACAAAAGTTAGA+GGG - chr3_4:24474225-24474244 None:intergenic 30.0%
!! TAACTTTTGTGCTGTTATGA+AGG + chr3_4:24474227-24474246 Msa0495330:intron 30.0%
ATTCAGTTACAATCATCCAT+CGG + chr3_4:24474593-24474612 Msa0495330:CDS 30.0%
ATATATCAGATGCAGTATGT+TGG - chr3_4:24474666-24474685 None:intergenic 30.0%
TATGAACACATGCAAATGAA+TGG + chr3_4:24474907-24474926 Msa0495330:three_prime_UTR 30.0%
TAATCATGACTATTCATAGG+TGG - chr3_4:24474961-24474980 None:intergenic 30.0%
!!! AACACTGATTTTGCGCTTAT+GGG - chr3_4:24471025-24471044 None:intergenic 35.0%
!!! TAACACTGATTTTGCGCTTA+TGG - chr3_4:24471026-24471045 None:intergenic 35.0%
!!! TTCGAGAAAGTGTGGTTTTT+TGG + chr3_4:24471046-24471065 Msa0495330:five_prime_UTR 35.0%
!!! TCGAGAAAGTGTGGTTTTTT+GGG + chr3_4:24471047-24471066 Msa0495330:five_prime_UTR 35.0%
!!! TTTTGAGTTTTGGCAATGGA+AGG + chr3_4:24471074-24471093 Msa0495330:exon 35.0%
AATGAAGCAGAAGATGATAG+TGG + chr3_4:24471097-24471116 Msa0495330:CDS 35.0%
!!! GTGTTTGTTTTGAGTGTAAG+TGG + chr3_4:24471143-24471162 Msa0495330:CDS 35.0%
!!! TTGTTTTGAGTGTAAGTGGT+TGG + chr3_4:24471147-24471166 Msa0495330:CDS 35.0%
AGAGTTGTTTGTGATGTTTG+TGG + chr3_4:24471188-24471207 Msa0495330:CDS 35.0%
GAGTTATGTTATGATGTCAC+TGG + chr3_4:24471644-24471663 Msa0495330:intron 35.0%
GATAGCAACCTAATAAAGTG+AGG - chr3_4:24471722-24471741 None:intergenic 35.0%
GGAGTAACAAACATTGTACA+AGG - chr3_4:24471797-24471816 None:intergenic 35.0%
AAACACTAGTGTGTATAGCA+AGG - chr3_4:24471840-24471859 None:intergenic 35.0%
! TGTTCTTGCAATCGACTTTA+TGG + chr3_4:24471927-24471946 Msa0495330:intron 35.0%
! GTTCTTGCAATCGACTTTAT+GGG + chr3_4:24471928-24471947 Msa0495330:intron 35.0%
! TTCTTGCAATCGACTTTATG+GGG + chr3_4:24471929-24471948 Msa0495330:intron 35.0%
! CAGAATTGCTGCATTTGTTA+AGG - chr3_4:24472003-24472022 None:intergenic 35.0%
TGTGAGAACATGTGATTACA+GGG - chr3_4:24472135-24472154 None:intergenic 35.0%
ATGTGAGAACATGTGATTAC+AGG - chr3_4:24472136-24472155 None:intergenic 35.0%
ACCATTCAATCTCAATCCAA+CGG - chr3_4:24472183-24472202 None:intergenic 35.0%
! GTAGGCATTGTTTGTGAATT+TGG - chr3_4:24472325-24472344 None:intergenic 35.0%
TTACACAAAATCCTTCCACT+TGG + chr3_4:24472379-24472398 Msa0495330:intron 35.0%
TGAAAACAACTAACTCCAAG+TGG - chr3_4:24472397-24472416 None:intergenic 35.0%
ATAGTGTTAGAGATCAGCAA+AGG - chr3_4:24472445-24472464 None:intergenic 35.0%
GAAGGAATATGATTGGTAGA+AGG - chr3_4:24472470-24472489 None:intergenic 35.0%
TAACATACTCTCTAGCAAAC+AGG - chr3_4:24472592-24472611 None:intergenic 35.0%
! TTATGCGCATCAAACCTTTT+GGG - chr3_4:24472663-24472682 None:intergenic 35.0%
! TTTATGCGCATCAAACCTTT+TGG - chr3_4:24472664-24472683 None:intergenic 35.0%
!!! CACTGAACCAAGGTTTTAAA+AGG - chr3_4:24472687-24472706 None:intergenic 35.0%
TACTTAACAACACTGAACCA+AGG - chr3_4:24472697-24472716 None:intergenic 35.0%
! GTTCAGTGTTGTTAAGTAAC+CGG + chr3_4:24472699-24472718 Msa0495330:intron 35.0%
GATATGTAACAGCAGTATAG+CGG - chr3_4:24472730-24472749 None:intergenic 35.0%
GCTATACTGCTGTTACATAT+CGG + chr3_4:24472729-24472748 Msa0495330:intron 35.0%
CTATACTGCTGTTACATATC+GGG + chr3_4:24472730-24472749 Msa0495330:intron 35.0%
!! TAGCAGTGCTTTTTGCATAT+CGG + chr3_4:24472810-24472829 Msa0495330:intron 35.0%
AAAGGTTGTTTAGTGATGAG+AGG - chr3_4:24473005-24473024 None:intergenic 35.0%
CATCAGAATCAATGTCTTGA+AGG - chr3_4:24473065-24473084 None:intergenic 35.0%
CGTTATTAATCACACTGTCT+TGG + chr3_4:24473455-24473474 Msa0495330:intron 35.0%
CTAAATGCTGCTAAAAGAAC+AGG - chr3_4:24473642-24473661 None:intergenic 35.0%
ACTATGACTCATCACCAAAA+TGG - chr3_4:24473755-24473774 None:intergenic 35.0%
ACAATGATACAACAAAGGAC+AGG + chr3_4:24473823-24473842 Msa0495330:intron 35.0%
! TGTAACCACATGTTTTGTGT+TGG + chr3_4:24473969-24473988 Msa0495330:intron 35.0%
! CTTAGGATTAAAGGTGTGTT+CGG - chr3_4:24474021-24474040 None:intergenic 35.0%
GCATCAACACTTAGGATTAA+AGG - chr3_4:24474030-24474049 None:intergenic 35.0%
GCAGTGTAACAAGATATTAC+GGG - chr3_4:24474200-24474219 None:intergenic 35.0%
CATAACAGCACAAAAGTTAG+AGG - chr3_4:24474226-24474245 None:intergenic 35.0%
!!! GGTTTTGAATGCTTTGATGT+AGG + chr3_4:24474375-24474394 Msa0495330:intron 35.0%
! CTGATAATTTAGAACTTCGC+CGG - chr3_4:24474433-24474452 None:intergenic 35.0%
TTCAGTTACAATCATCCATC+GGG + chr3_4:24474594-24474613 Msa0495330:CDS 35.0%
!! ATTGACAGGTTGGTAAACAA+AGG - chr3_4:24474640-24474659 None:intergenic 35.0%
!!! CTATACGGACTTTTGTTGTT+CGG + chr3_4:24474687-24474706 Msa0495330:three_prime_UTR 35.0%
GATGATTAACCTATCTCAGA+TGG - chr3_4:24474885-24474904 None:intergenic 35.0%
! CAGTGTTATTCGAGAAAGTG+TGG + chr3_4:24471038-24471057 Msa0495330:five_prime_UTR 40.0%
GTTTGTGGTGATTCTTCTCT+TGG + chr3_4:24471203-24471222 Msa0495330:CDS 40.0%
CCTTCAAGAACATGATCTTC+AGG - chr3_4:24471230-24471249 None:intergenic 40.0%
CCTGAAGATCATGTTCTTGA+AGG + chr3_4:24471227-24471246 Msa0495330:CDS 40.0%
CTCTCTCTCTCTCTCTATTT+AGG + chr3_4:24471285-24471304 Msa0495330:intron 40.0%
TATTACCGGTGTTTACGTGT+CGG - chr3_4:24471484-24471503 None:intergenic 40.0%
ACACCGACACTTCAAATTGA+AGG - chr3_4:24471559-24471578 None:intergenic 40.0%
!!! AGGGTTTTTGAAGTGTTAGC+TGG + chr3_4:24471616-24471635 Msa0495330:intron 40.0%
!!! GGGTTTTTGAAGTGTTAGCT+GGG + chr3_4:24471617-24471636 Msa0495330:intron 40.0%
GTCGATTGCAAGAACATTAG+AGG - chr3_4:24471923-24471942 None:intergenic 40.0%
TAAGGACACTATTCCTCCTA+GGG - chr3_4:24471985-24472004 None:intergenic 40.0%
TTAAGGACACTATTCCTCCT+AGG - chr3_4:24471986-24472005 None:intergenic 40.0%
ATTCACTCACTCAGCTACAT+CGG - chr3_4:24472292-24472311 None:intergenic 40.0%
AACAACTAACTCCAAGTGGA+AGG - chr3_4:24472393-24472412 None:intergenic 40.0%
CAATGACAAGACAGCTGAAA+TGG - chr3_4:24472492-24472511 None:intergenic 40.0%
! TTGTCTGGGATCCTCTAAAT+TGG + chr3_4:24472509-24472528 Msa0495330:intron 40.0%
CCATGTGGAAACCAATTTAG+AGG - chr3_4:24472523-24472542 None:intergenic 40.0%
! CCTCTAAATTGGTTTCCACA+TGG + chr3_4:24472520-24472539 Msa0495330:intron 40.0%
CATAAACTCGTTCTCCCAAA+AGG + chr3_4:24472646-24472665 Msa0495330:intron 40.0%
TGCTGTTACATATCGGGATT+TGG + chr3_4:24472736-24472755 Msa0495330:intron 40.0%
!! ATATTGAGTCGGTGTTGAGA+TGG + chr3_4:24472950-24472969 Msa0495330:intron 40.0%
!! TATTGAGTCGGTGTTGAGAT+GGG + chr3_4:24472951-24472970 Msa0495330:intron 40.0%
CTTATATAACCCCACTAGCT+AGG + chr3_4:24472976-24472995 Msa0495330:intron 40.0%
AGATGAATTATGACGCGAAG+AGG - chr3_4:24473042-24473061 None:intergenic 40.0%
! AAATAGCGGAAACCACAAAG+TGG - chr3_4:24473403-24473422 None:intergenic 40.0%
!! GTGTGATTAATAACGGATCG+CGG - chr3_4:24473450-24473469 None:intergenic 40.0%
GCATTGAGACATTGCATCAA+AGG - chr3_4:24473612-24473631 None:intergenic 40.0%
TGCTATTATAGAAGGGAAGG+TGG + chr3_4:24474065-24474084 Msa0495330:intron 40.0%
TAACTGATCCAACCCTTCAT+AGG - chr3_4:24474119-24474138 None:intergenic 40.0%
GCTGTTATGAAGGAAAAGAG+AGG + chr3_4:24474237-24474256 Msa0495330:intron 40.0%
GTTCTTTGCATAACCAAGTC+CGG + chr3_4:24474411-24474430 Msa0495330:CDS 40.0%
!! CGGCGAAGTTCTAAATTATC+AGG + chr3_4:24474431-24474450 Msa0495330:CDS 40.0%
TCAGGCATTTACAGATGCTA+AGG + chr3_4:24474449-24474468 Msa0495330:CDS 40.0%
CAGGCATTTACAGATGCTAA+GGG + chr3_4:24474450-24474469 Msa0495330:CDS 40.0%
AGGCATTTACAGATGCTAAG+GGG + chr3_4:24474451-24474470 Msa0495330:CDS 40.0%
TGCTCATGGAAACTACTGAT+TGG - chr3_4:24474537-24474556 None:intergenic 40.0%
TCAGTTACAATCATCCATCG+GGG + chr3_4:24474595-24474614 Msa0495330:CDS 40.0%
ATGTTGGAACATTGACAGGT+TGG - chr3_4:24474650-24474669 None:intergenic 40.0%
CAGTATGTTGGAACATTGAC+AGG - chr3_4:24474654-24474673 None:intergenic 40.0%
! ATGGTATTGCCATCTGAGAT+AGG + chr3_4:24474873-24474892 Msa0495330:three_prime_UTR 40.0%
TTGAGTGTAAGTGGTTGGAC+TGG + chr3_4:24471152-24471171 Msa0495330:CDS 45.0%
GAATACCGACACGTAAACAC+CGG + chr3_4:24471476-24471495 Msa0495330:intron 45.0%
CAAATGCAGCAATTCTGCAG+AGG + chr3_4:24472006-24472025 Msa0495330:intron 45.0%
! GGGAGAGTACAGAATCTAGA+AGG + chr3_4:24472074-24472093 Msa0495330:intron 45.0%
CTAGATACATCGATAGCCGT+TGG + chr3_4:24472164-24472183 Msa0495330:intron 45.0%
GCCGTTGGATTGAGATTGAA+TGG + chr3_4:24472179-24472198 Msa0495330:intron 45.0%
TGTAGCTGAGTGAGTGAATG+CGG + chr3_4:24472293-24472312 Msa0495330:intron 45.0%
AGGGAACAGAATGATGAGGT+AGG - chr3_4:24472343-24472362 None:intergenic 45.0%
AGAGAGGGAACAGAATGATG+AGG - chr3_4:24472347-24472366 None:intergenic 45.0%
GACAAGACAGCTGAAATGGA+AGG - chr3_4:24472488-24472507 None:intergenic 45.0%
TCAGCTGTCTTGTCATTGTC+TGG + chr3_4:24472494-24472513 Msa0495330:intron 45.0%
CAGCTGTCTTGTCATTGTCT+GGG + chr3_4:24472495-24472514 Msa0495330:intron 45.0%
CACTGCTATTGCAGTGATAG+CGG - chr3_4:24472798-24472817 None:intergenic 45.0%
!! ATTGAGTCGGTGTTGAGATG+GGG + chr3_4:24472952-24472971 Msa0495330:intron 45.0%
TGAGAGGTTACCTAGCTAGT+GGG - chr3_4:24472989-24473008 None:intergenic 45.0%
ATGAGAGGTTACCTAGCTAG+TGG - chr3_4:24472990-24473009 None:intergenic 45.0%
TATGACGCGAAGAGGTAAGA+TGG - chr3_4:24473034-24473053 None:intergenic 45.0%
TACCTCGCTATCGCAAAATG+AGG + chr3_4:24473110-24473129 Msa0495330:intron 45.0%
! ATCCTCATTTTGCGATAGCG+AGG - chr3_4:24473115-24473134 None:intergenic 45.0%
!! AAAATAGCGGATAGCGTAGC+GGG - chr3_4:24473427-24473446 None:intergenic 45.0%
!! GAAAATAGCGGATAGCGTAG+CGG - chr3_4:24473428-24473447 None:intergenic 45.0%
! TAACGGATCGCGGAAAATAG+CGG - chr3_4:24473440-24473459 None:intergenic 45.0%
CAACAAAGGACAGGTGAATG+TGG + chr3_4:24473832-24473851 Msa0495330:intron 45.0%
!! TGAAGCATCGACATAGACAC+AGG + chr3_4:24473891-24473910 Msa0495330:intron 45.0%
GGACACCAACACAAAACATG+TGG - chr3_4:24473977-24473996 None:intergenic 45.0%
AGTCTGACACGAGTTAGAGT+CGG - chr3_4:24473998-24474017 None:intergenic 45.0%
TGTAGAGCTGTTGCTGTAGT+GGG + chr3_4:24474091-24474110 Msa0495330:intron 45.0%
! CTGTAGTGGGATCCTATGAA+GGG + chr3_4:24474104-24474123 Msa0495330:intron 45.0%
! ATTTAGAACTTCGCCGGACT+TGG - chr3_4:24474427-24474446 None:intergenic 45.0%
CTCAGTGATTCAGCGAGTGT+CGG + chr3_4:24470976-24470995 Msa0495330:five_prime_UTR 50.0%
!! GGTTGGACTGGTGAAATTCG+TGG + chr3_4:24471164-24471183 Msa0495330:CDS 50.0%
TCTCCCAGAGTATGAACCCT+AGG + chr3_4:24471966-24471985 Msa0495330:intron 50.0%
CCTCCTAGGGTTCATACTCT+GGG - chr3_4:24471972-24471991 None:intergenic 50.0%
TCCTCCTAGGGTTCATACTC+TGG - chr3_4:24471973-24471992 None:intergenic 50.0%
ACTCACTCAGCTACATCGGT+GGG - chr3_4:24472288-24472307 None:intergenic 50.0%
GTAGCTGAGTGAGTGAATGC+GGG + chr3_4:24472294-24472313 Msa0495330:intron 50.0%
TGGTTTCCACATGGTCGTTC+AGG + chr3_4:24472529-24472548 Msa0495330:intron 50.0%
GAGAGGTTACCTAGCTAGTG+GGG - chr3_4:24472988-24473007 None:intergenic 50.0%
GAGGTAAGATGGAGAGGCAA+AGG - chr3_4:24473023-24473042 None:intergenic 50.0%
!! ATAGCGTAGCGGGCAAATAG+CGG - chr3_4:24473417-24473436 None:intergenic 50.0%
CTGTAGAGCTGTTGCTGTAG+TGG + chr3_4:24474090-24474109 Msa0495330:intron 50.0%
! GCTGTAGTGGGATCCTATGA+AGG + chr3_4:24474103-24474122 Msa0495330:intron 50.0%
AGTGGGATCCTATGAAGGGT+TGG + chr3_4:24474108-24474127 Msa0495330:intron 50.0%
AATGCCCGAGAGTGATCGTT+GGG + chr3_4:24474494-24474513 Msa0495330:CDS 50.0%
TGCATCCCAACGATCACTCT+CGG - chr3_4:24474502-24474521 None:intergenic 50.0%
!! TCGTCTTGGTGGTGGTAGTT+CGG + chr3_4:24474563-24474582 Msa0495330:CDS 50.0%
!! AGTGATTCAGCGAGTGTCGG+TGG + chr3_4:24470979-24470998 Msa0495330:five_prime_UTR 55.0%
CCCAGAGTATGAACCCTAGG+AGG + chr3_4:24471969-24471988 Msa0495330:intron 55.0%
GGTGGGAGTTGGATCGAGAT+CGG - chr3_4:24472271-24472290 None:intergenic 55.0%
TCAGCTACATCGGTGGGAGT+TGG - chr3_4:24472282-24472301 None:intergenic 55.0%
CACTCACTCAGCTACATCGG+TGG - chr3_4:24472289-24472308 None:intergenic 55.0%
TAGGCACCTGAACGACCATG+TGG - chr3_4:24472538-24472557 None:intergenic 55.0%
!! CAGCAGTATAGCGGTGCTAC+CGG - chr3_4:24472721-24472740 None:intergenic 55.0%
CGCGAAGAGGTAAGATGGAG+AGG - chr3_4:24473029-24473048 None:intergenic 55.0%
CAATGCCCGAGAGTGATCGT+TGG + chr3_4:24474493-24474512 Msa0495330:CDS 55.0%
GCATCCCAACGATCACTCTC+GGG - chr3_4:24474501-24474520 None:intergenic 55.0%
CAAGACGAGTGCAGTGCTCA+TGG - chr3_4:24474551-24474570 None:intergenic 55.0%
! CATGAGCACTGCACTCGTCT+TGG + chr3_4:24474549-24474568 Msa0495330:CDS 55.0%
!! CGTCTTGGTGGTGGTAGTTC+GGG + chr3_4:24474564-24474583 Msa0495330:CDS 55.0%
ACAGCATGTGAGTACCCCGA+TGG - chr3_4:24474612-24474631 None:intergenic 55.0%
! GAGCACTGCACTCGTCTTGG+TGG + chr3_4:24474552-24474571 Msa0495330:CDS 60.0%
CACTGCACTCGTCTTGGTGG+TGG + chr3_4:24474555-24474574 Msa0495330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 24470950 24475007 24470950 ID=Msa0495330;Name=Msa0495330
chr3_4 mRNA 24470950 24475007 24470950 ID=Msa0495330-mRNA-1;Parent=Msa0495330;Name=Msa0495330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=139|1|1|1|1|1|2|327|147
chr3_4 exon 24470950 24471248 24470950 ID=Msa0495330-mRNA-1:exon:5919;Parent=Msa0495330-mRNA-1
chr3_4 exon 24474397 24475007 24474397 ID=Msa0495330-mRNA-1:exon:5920;Parent=Msa0495330-mRNA-1
chr3_4 five_prime_UTR 24470950 24471088 24470950 ID=Msa0495330-mRNA-1:five_prime_utr;Parent=Msa0495330-mRNA-1
chr3_4 CDS 24471089 24471248 24471089 ID=Msa0495330-mRNA-1:cds;Parent=Msa0495330-mRNA-1
chr3_4 CDS 24474397 24474680 24474397 ID=Msa0495330-mRNA-1:cds;Parent=Msa0495330-mRNA-1
chr3_4 three_prime_UTR 24474681 24475007 24474681 ID=Msa0495330-mRNA-1:three_prime_utr;Parent=Msa0495330-mRNA-1
Gene Sequence

>Msa0495330

ATGGAAGGAATGAAGCAGAAGATGATAGTGGAATTGATTGTATTGTTGATGATGGTGTTTGTTTTGAGTGTAAGTGGTTGGACTGGTGAAATTCGTGGAAGAGTTGTTTGTGATGTTTGTGGTGATTCTTCTCTTGGTCCTGAAGATCATGTTCTTGAAGGTGCTGAAGTTGCTGTTCTTTGCATAACCAAGTCCGGCGAAGTTCTAAATTATCAGGCATTTACAGATGCTAAGGGGATATACACAGTAGCTGAGACAATGCCCGAGAGTGATCGTTGGGATGCATGTCTTGCTCGACCAATCAGTAGTTTCCATGAGCACTGCACTCGTCTTGGTGGTGGTAGTTCGGGTATTAAATTCAGTTACAATCATCCATCGGGGTACTCACATGCTGTCAGAACCTTTGTTTACCAACCTGTCAATGTTCCAACATACTGCATCTGA

Protein sequence

>Msa0495330

MEGMKQKMIVELIVLLMMVFVLSVSGWTGEIRGRVVCDVCGDSSLGPEDHVLEGAEVAVLCITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEHCTRLGGGSSGIKFSYNHPSGYSHAVRTFVYQPVNVPTYCI*