AlfalfaGEDB | Msa1272680

M. sativa cultivar zhongmu-4 / Msa1272680

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771
PFAM: PF00403.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272680	sp\|Q9SHQ8\|HIP4_ARATH	51.479	169	70	2	26	184	13	179	1.30e-45	157

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272680	G7ZWQ0	88.123	261	17	2	16	274	17	265	3.51e-135	392

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015390	Msa1272680	0.832676	8.250206e-56	-8.615850e-47
Msa0028620	Msa1272680	0.808714	2.704171e-50	-8.615850e-47
Msa0043980	Msa1272680	0.806546	7.805535e-50	-8.615850e-47
Msa0044000	Msa1272680	0.809682	1.677092e-50	-8.615850e-47
Msa0052730	Msa1272680	0.807867	4.097529e-50	-8.615850e-47
Msa0075470	Msa1272680	0.809243	2.083060e-50	-8.615850e-47
Msa0075640	Msa1272680	0.806734	7.125290e-50	-8.615850e-47
Msa0079070	Msa1272680	0.815272	1.006657e-51	-8.615850e-47
Msa0099210	Msa1272680	0.844046	9.633593e-59	-8.615850e-47
Msa0106620	Msa1272680	0.802349	5.851368e-49	-8.615850e-47
Msa0106710	Msa1272680	0.811088	8.340558e-51	-8.615850e-47
Msa0610840	Msa1272680	-0.800257	1.568715e-48	-8.615850e-47
Msa0703780	Msa1272680	0.807342	5.298072e-50	-8.615850e-47
Msa0731940	Msa1272680	0.815266	1.009595e-51	-8.615850e-47
Msa0735170	Msa1272680	0.830626	2.641359e-55	-8.615850e-47
Msa0750240	Msa1272680	0.820262	7.524999e-53	-8.615850e-47
Msa0753720	Msa1272680	0.811913	5.519432e-51	-8.615850e-47
Msa0760130	Msa1272680	0.815026	1.141262e-51	-8.615850e-47
Msa0773590	Msa1272680	0.801301	9.602658e-49	-8.615850e-47
Msa0784480	Msa1272680	0.827572	1.453120e-54	-8.615850e-47
Msa0810220	Msa1272680	0.802770	4.790866e-49	-8.615850e-47
Msa0817460	Msa1272680	0.802138	6.468461e-49	-8.615850e-47
Msa0818060	Msa1272680	0.815824	7.584948e-52	-8.615850e-47
Msa0820770	Msa1272680	0.803480	3.416825e-49	-8.615850e-47
Msa0820850	Msa1272680	0.816997	4.143870e-52	-8.615850e-47
Msa0830510	Msa1272680	0.811726	6.061600e-51	-8.615850e-47
Msa0831850	Msa1272680	0.809006	2.341708e-50	-8.615850e-47
Msa0832340	Msa1272680	0.836284	1.023984e-56	-8.615850e-47
Msa0127800	Msa1272680	0.822709	2.049366e-53	-8.615850e-47
Msa0131770	Msa1272680	0.832792	7.721595e-56	-8.615850e-47
Msa0186950	Msa1272680	0.806391	8.416145e-50	-8.615850e-47
Msa0198340	Msa1272680	0.819712	1.005738e-52	-8.615850e-47
Msa0211150	Msa1272680	0.816004	6.913177e-52	-8.615850e-47
Msa0212990	Msa1272680	0.800731	1.255941e-48	-8.615850e-47
Msa0218810	Msa1272680	0.822187	2.708545e-53	-8.615850e-47
Msa0219590	Msa1272680	0.829374	5.334622e-55	-8.615850e-47
Msa1230130	Msa1272680	0.822072	2.880083e-53	-8.615850e-47
Msa1271130	Msa1272680	0.815813	7.627957e-52	-8.615850e-47
Msa1272680	Msa1284680	0.832958	7.021347e-56	-8.615850e-47
Msa1272680	Msa1285550	0.815338	9.732479e-52	-8.615850e-47
Msa1272680	Msa1286800	0.833367	5.553456e-56	-8.615850e-47
Msa1272680	Msa1287190	0.815134	1.080239e-51	-8.615850e-47
Msa1272680	Msa1287220	0.824637	7.246489e-54	-8.615850e-47
Msa1272680	Msa1298510	0.800069	1.712965e-48	-8.615850e-47
Msa1272680	Msa1305810	0.808743	2.665475e-50	-8.615850e-47
Msa1272680	Msa1309030	0.814185	1.751894e-51	-8.615850e-47
Msa1272680	Msa1313140	0.801057	1.077608e-48	-8.615850e-47
Msa1272680	Msa1343250	0.801176	1.018581e-48	-8.615850e-47
Msa1272680	Msa1353470	0.858025	1.092999e-62	-8.615850e-47
Msa1272680	Msa1366810	0.803131	4.034914e-49	-8.615850e-47
Msa1272680	Msa1368430	0.807512	4.874209e-50	-8.615850e-47
Msa1272680	Msa1372760	0.803017	4.260880e-49	-8.615850e-47
Msa1272680	Msa1373030	0.822602	2.170292e-53	-8.615850e-47
Msa1272680	Msa1382400	0.805349	1.393642e-49	-8.615850e-47
Msa1272680	Msa1390700	0.804597	2.001600e-49	-8.615850e-47
Msa1272680	Msa1392910	0.809171	2.158821e-50	-8.615850e-47
Msa1272680	Msa1394380	0.818605	1.796129e-52	-8.615850e-47
Msa1272680	Msa1409880	0.813471	2.516562e-51	-8.615850e-47
Msa1272680	Msa1410680	0.813480	2.506194e-51	-8.615850e-47
Msa1272680	Msa1435270	0.807883	4.066958e-50	-8.615850e-47
Msa1272680	Msa1463900	0.833724	4.524403e-56	-8.615850e-47
Msa1272680	Msa1466540	0.819229	1.295823e-52	-8.615850e-47
Msa0367870	Msa1272680	0.820775	5.739646e-53	-8.615850e-47
Msa0385840	Msa1272680	0.815170	1.060469e-51	-8.615850e-47
Msa0391430	Msa1272680	0.807213	5.640541e-50	-8.615850e-47
Msa0405570	Msa1272680	0.815989	6.966266e-52	-8.615850e-47
Msa0440750	Msa1272680	0.801492	8.778996e-49	-8.615850e-47
Msa0455760	Msa1272680	0.807174	5.750601e-50	-8.615850e-47
Msa0460590	Msa1272680	0.823953	1.049519e-53	-8.615850e-47
Msa0464680	Msa1272680	0.808069	3.712039e-50	-8.615850e-47
Msa0980880	Msa1272680	0.810807	9.593525e-51	-8.615850e-47
Msa0997370	Msa1272680	0.803517	3.357324e-49	-8.615850e-47
Msa0999290	Msa1272680	0.802195	6.295738e-49	-8.615850e-47
Msa1002850	Msa1272680	0.815354	9.649085e-52	-8.615850e-47
Msa1016320	Msa1272680	0.832734	7.981615e-56	-8.615850e-47
Msa1019000	Msa1272680	0.825404	4.774110e-54	-8.615850e-47
Msa1019150	Msa1272680	0.807598	4.674446e-50	-8.615850e-47
Msa1036610	Msa1272680	0.808062	3.724926e-50	-8.615850e-47
Msa1054990	Msa1272680	0.805086	1.581642e-49	-8.615850e-47
Msa1065570	Msa1272680	0.801655	8.126070e-49	-8.615850e-47
Msa1075650	Msa1272680	0.813115	3.013658e-51	-8.615850e-47
Msa1079430	Msa1272680	0.818652	1.752615e-52	-8.615850e-47
Msa1082500	Msa1272680	0.804200	2.421351e-49	-8.615850e-47
Msa1083840	Msa1272680	0.809302	2.023997e-50	-8.615850e-47
Msa1100050	Msa1272680	0.802159	6.403860e-49	-8.615850e-47
Msa0241140	Msa1272680	0.813795	2.136470e-51	-8.615850e-47
Msa0251640	Msa1272680	0.818229	2.185573e-52	-8.615850e-47
Msa0258310	Msa1272680	0.813159	2.947836e-51	-8.615850e-47
Msa0259210	Msa1272680	0.806548	7.798139e-50	-8.615850e-47
Msa0307540	Msa1272680	0.801728	7.852338e-49	-8.615850e-47
Msa0319170	Msa1272680	0.805293	1.431892e-49	-8.615850e-47
Msa0336320	Msa1272680	0.804250	2.363741e-49	-8.615850e-47
Msa0341540	Msa1272680	0.810524	1.104288e-50	-8.615850e-47
Msa0343850	Msa1272680	0.811882	5.604168e-51	-8.615850e-47
Msa0358890	Msa1272680	0.817078	3.973271e-52	-8.615850e-47
Msa0363790	Msa1272680	0.830064	3.624631e-55	-8.615850e-47
Msa1121480	Msa1272680	0.800477	1.414936e-48	-8.615850e-47
Msa1121490	Msa1272680	0.842218	2.958147e-58	-8.615850e-47
Msa1135470	Msa1272680	0.802306	5.972645e-49	-8.615850e-47
Msa1137570	Msa1272680	0.830347	3.090428e-55	-8.615850e-47
Msa1142670	Msa1272680	0.807485	4.940888e-50	-8.615850e-47
Msa1144450	Msa1272680	0.814091	1.838066e-51	-8.615850e-47
Msa1147740	Msa1272680	0.813525	2.449240e-51	-8.615850e-47
Msa1152440	Msa1272680	0.806662	7.378291e-50	-8.615850e-47
Msa1173100	Msa1272680	0.806600	7.601887e-50	-8.615850e-47
Msa1177560	Msa1272680	0.813363	2.658582e-51	-8.615850e-47
Msa1188710	Msa1272680	0.818272	2.137845e-52	-8.615850e-47
Msa1195190	Msa1272680	0.800894	1.163514e-48	-8.615850e-47
Msa1198770	Msa1272680	0.808931	2.430600e-50	-8.615850e-47
Msa1210020	Msa1272680	0.803901	2.794657e-49	-8.615850e-47
Msa1221050	Msa1272680	0.805993	1.020938e-49	-8.615850e-47
Msa0518380	Msa1272680	0.811178	7.972047e-51	-8.615850e-47
Msa0545700	Msa1272680	0.807129	5.878425e-50	-8.615850e-47
Msa0844490	Msa1272680	0.819640	1.044205e-52	-8.615850e-47
Msa0853520	Msa1272680	0.808423	3.120449e-50	-8.615850e-47
Msa0861130	Msa1272680	0.816989	4.159984e-52	-8.615850e-47
Msa0861540	Msa1272680	0.803093	4.108381e-49	-8.615850e-47
Msa0866410	Msa1272680	0.810530	1.101303e-50	-8.615850e-47
Msa0870610	Msa1272680	0.804894	1.735458e-49	-8.615850e-47
Msa0875290	Msa1272680	0.808423	3.120378e-50	-8.615850e-47
Msa0893800	Msa1272680	0.818190	2.230559e-52	-8.615850e-47
Msa0894710	Msa1272680	0.809956	1.464054e-50	-8.615850e-47
Msa0897330	Msa1272680	0.812138	4.928321e-51	-8.615850e-47
Msa0898750	Msa1272680	0.826876	2.132841e-54	-8.615850e-47
Msa0899450	Msa1272680	0.810848	9.399730e-51	-8.615850e-47
Msa0926370	Msa1272680	0.819354	1.213496e-52	-8.615850e-47
Msa0927310	Msa1272680	0.809907	1.500456e-50	-8.615850e-47
Msa0927380	Msa1272680	0.823525	1.322042e-53	-8.615850e-47
Msa0928130	Msa1272680	0.827067	1.919886e-54	-8.615850e-47
Msa0933100	Msa1272680	0.806138	9.514288e-50	-8.615850e-47
Msa0936390	Msa1272680	0.822160	2.748012e-53	-8.615850e-47
Msa0947660	Msa1272680	0.803101	4.094254e-49	-8.615850e-47
Msa0960390	Msa1272680	0.813947	1.977297e-51	-8.615850e-47
Msa0962840	Msa1272680	0.829954	3.854491e-55	-8.615850e-47
Msa0964310	Msa1272680	0.823981	1.033788e-53	-8.615850e-47
Msa0964900	Msa1272680	0.811855	5.681121e-51	-8.615850e-47
Msa0969520	Msa1272680	0.834938	2.243725e-56	-8.615850e-47
Msa0969810	Msa1272680	0.800362	1.493550e-48	-8.615850e-47
Msa0972100	Msa1272680	0.808719	2.696933e-50	-8.615850e-47
Msa0974080	Msa1272680	0.800678	1.287819e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272680	MtrunA17_Chr8g0337951	88.123	261	17	2	16	274	17	265	6.75e-139	392
Msa1272680	MtrunA17_Chr3g0094841	31.855	248	128	5	29	273	27	236	2.01e-29	111
Msa1272680	MtrunA17_Chr3g0128091	30.120	249	168	4	30	274	38	284	2.33e-24	99.0
Msa1272680	MtrunA17_Chr8g0386231	30.996	271	155	6	31	273	54	320	1.01e-23	98.2
Msa1272680	MtrunA17_Chr4g0028461	29.730	259	166	4	29	273	67	323	4.57e-23	96.3
Msa1272680	MtrunA17_Chr1g0180631	26.506	332	177	7	7	273	3	332	6.65e-23	95.9
Msa1272680	MtrunA17_Chr2g0290471	35.573	253	132	6	31	273	37	268	2.82e-20	87.8
Msa1272680	MtrunA17_Chr3g0132051	32.271	251	140	8	31	273	37	265	2.33e-19	85.1
Msa1272680	MtrunA17_Chr3g0132061	27.941	272	160	5	31	273	37	301	1.05e-16	78.2
Msa1272680	MtrunA17_Chr5g0429111	25.974	154	112	1	30	183	55	206	3.27e-16	77.0
Msa1272680	MtrunA17_Chr7g0264601	27.907	215	120	3	16	204	3	208	3.34e-16	77.4
Msa1272680	MtrunA17_Chr2g0327311	30.814	172	95	4	30	183	67	232	8.61e-14	70.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1272680	AT1G29000.1	51.479	169	70	2	26	184	13	179	1.32e-46	157
Msa1272680	AT1G29000.2	51.479	169	70	2	26	184	13	179	1.32e-46	157
Msa1272680	AT5G50740.5	31.395	258	157	5	31	273	30	282	1.08e-28	110
Msa1272680	AT5G50740.1	31.395	258	157	5	31	273	30	282	1.08e-28	110
Msa1272680	AT5G50740.3	31.439	264	149	5	31	273	37	289	1.56e-28	110
Msa1272680	AT3G02960.1	29.044	272	151	6	5	273	13	245	1.07e-24	99.4
Msa1272680	AT5G24580.4	25.940	266	170	4	31	274	59	319	1.72e-20	89.7
Msa1272680	AT5G24580.1	25.940	266	170	4	31	274	59	319	1.72e-20	89.7
Msa1272680	AT5G24580.2	25.940	266	170	4	31	274	58	318	1.73e-20	89.4
Msa1272680	AT5G60800.1	28.897	263	164	4	28	273	26	282	5.24e-20	87.8
Msa1272680	AT5G60800.2	28.897	263	164	4	28	273	26	282	9.36e-20	87.4
Msa1272680	AT5G03380.1	27.727	220	119	2	7	186	3	222	5.99e-19	85.9
Msa1272680	AT5G63530.2	31.325	166	100	4	31	185	61	223	5.68e-18	82.8
Msa1272680	AT5G63530.1	31.325	166	100	4	31	185	76	238	6.59e-18	82.8
Msa1272680	AT5G24580.3	25.188	266	169	5	31	274	59	316	2.19e-17	80.9
Msa1272680	AT5G03380.2	27.320	194	101	2	33	186	2	195	5.91e-16	77.4
Msa1272680	AT2G36950.1	26.126	333	156	8	31	273	53	385	1.82e-15	75.9
Msa1272680	AT5G50740.2	33.884	121	73	2	31	144	30	150	2.63e-14	69.3
Msa1272680	AT5G50740.4	33.884	121	73	2	31	144	37	157	7.37e-14	68.6
Msa1272680	AT5G24580.5	24.473	237	152	4	60	274	1	232	4.57e-13	67.4

Find 45 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCATAAAAGAACATAAAA+AGG	0.239075	8_3:-6447236	Msa1272680:CDS
TGAAAAGGGAAAAGATAAAA+AGG	0.281846	8_3:-6448253	Msa1272680:CDS
TAGGAAATAGAACAGGAATT+AGG	0.314724	8_3:+6446983	None:intergenic
CTTACATCCTTAGCTTCCTT+TGG	0.331951	8_3:+6447833	None:intergenic
ATCTCTTTAGGCTTCACTTT+TGG	0.333375	8_3:+6447875	None:intergenic
GCCTAAAGAGATTATTATTA+CGG	0.342379	8_3:-6447864	Msa1272680:CDS
ACCGTGATAGTTCGGACAAT+TGG	0.342873	8_3:+6447576	None:intergenic
ATGATGAATTTCTATTACTT+TGG	0.343843	8_3:+6447102	None:intergenic
AGAAGAAAAGAAAGATGAAA+AGG	0.346094	8_3:-6448268	Msa1272680:CDS
ACGAGATGAGATTAAAATAA+AGG	0.367193	8_3:-6447071	Msa1272680:CDS
TAAACATAGTGAATAATATA+AGG	0.370125	8_3:+6447034	None:intergenic
GAAGAAAAGAAAGATGAAAA+GGG	0.399027	8_3:-6448267	Msa1272680:CDS
TCCGTAATAATAATCTCTTT+AGG	0.412077	8_3:+6447863	None:intergenic
AAGAAGGACAAGGGCAAAGA+AGG	0.417924	8_3:-6447142	Msa1272680:CDS
AAAGGAGAAATCAAGGCAAA+AGG	0.441442	8_3:-6447968	Msa1272680:CDS
GCTCAAAGTCTAATAGTTGA+AGG	0.463896	8_3:-6447325	Msa1272680:CDS
TAGACTTTGAGCTTTCTTGT+CGG	0.464535	8_3:+6447336	None:intergenic
AAGGAAGAAAAGAAAGAGAA+GGG	0.471156	8_3:-6447217	Msa1272680:CDS
TGTCAATTTCTCCACTTCAA+TGG	0.471427	8_3:+6447300	None:intergenic
AAAGGAAGAAAAGAAAGAGA+AGG	0.477998	8_3:-6447218	Msa1272680:CDS
TTCTGGCAATAAGGAATGGC+AGG	0.478136	8_3:-6448297	None:intergenic
AAGGAGAAATCAAGGCAAAA+GGG	0.480202	8_3:-6447967	Msa1272680:CDS
GGGCAAAGAAGAAGAAAAGA+AGG	0.484184	8_3:-6447158	Msa1272680:CDS
GAACCTTCACCGTGATAGTT+CGG	0.491514	8_3:+6447568	None:intergenic
TATTGAGAAAGGAGAAATCA+AGG	0.521327	8_3:-6447975	Msa1272680:CDS
CCAAAACTAGGAAATAGAAC+AGG	0.525497	8_3:+6446976	None:intergenic
GTAGAAATGAATATTGAGAA+AGG	0.528475	8_3:-6447986	Msa1272680:CDS
AAAGGAAGAAAAGAAAGACC+AGG	0.531320	8_3:-6447179	Msa1272680:CDS
AAGCATCTCTTAACTACTCA+AGG	0.543765	8_3:-6448144	Msa1272680:intron
AAAGTAATAGAAATTCATCA+TGG	0.570530	8_3:-6447100	Msa1272680:CDS
TTCTCATCACTGAATAATTG+TGG	0.571327	8_3:+6447007	None:intergenic
GAAGAAGAAAAGAAGGACAA+GGG	0.572285	8_3:-6447151	Msa1272680:CDS
CTCAAAGTCTAATAGTTGAA+GGG	0.578136	8_3:-6447324	Msa1272680:CDS
AGAAGAAGAAAAGAAGGACA+AGG	0.578619	8_3:-6447152	Msa1272680:CDS
GGCAATAAGGAATGGCAGGA+GGG	0.588187	8_3:-6448293	None:intergenic
GCCAATTGTCCGAACTATCA+CGG	0.589016	8_3:-6447577	Msa1272680:CDS
AAGGAAGAAAAGAAAGACCA+GGG	0.601578	8_3:-6447178	Msa1272680:CDS
AACTTGCATTGTCAAGAATG+TGG	0.604558	8_3:-6448180	Msa1272680:CDS
AGTTGAAGGGACCATTGAAG+TGG	0.609413	8_3:-6447311	Msa1272680:CDS
ACTTGCATTGTCAAGAATGT+GGG	0.635040	8_3:-6448179	Msa1272680:CDS
TGTCCGAACTATCACGGTGA+AGG	0.635919	8_3:-6447571	Msa1272680:CDS
TGGCAATAAGGAATGGCAGG+AGG	0.640559	8_3:-6448294	None:intergenic
AAGAGTGCATAGAAATGCAG+AGG	0.644270	8_3:-6447263	Msa1272680:CDS
CGTATATTAATCAAGCACAA+AGG	0.685243	8_3:-6447510	Msa1272680:intron
CATGCATTGTGACAAATGTG+AGG	0.745793	8_3:-6447544	Msa1272680:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAATTGTATTTTATTTTGTA+GGG	-	chr8_3:6447246-6447265	Msa1272680:CDS	10.0%
!!!	ATGATATATTTTTTTTTTTG+AGG	-	chr8_3:6447550-6447569	Msa1272680:CDS	10.0%
!!!	TGATATATTTTTTTTTTTGA+GGG	-	chr8_3:6447551-6447570	Msa1272680:CDS	10.0%
!!!	TAATTGTATTTTATTTTGTA+GGG	-	chr8_3:6447246-6447265	Msa1272680:CDS	10.0%
!!!	ATGATATATTTTTTTTTTTG+AGG	-	chr8_3:6447550-6447569	Msa1272680:CDS	10.0%
!!!	TGATATATTTTTTTTTTTGA+GGG	-	chr8_3:6447551-6447570	Msa1272680:CDS	10.0%
!!!	GTAATTGTATTTTATTTTGT+AGG	-	chr8_3:6447245-6447264	Msa1272680:CDS	15.0%
!!!	AATTGTATTTTATTTTGTAG+GGG	-	chr8_3:6447247-6447266	Msa1272680:CDS	15.0%
!!	TAAACATAGTGAATAATATA+AGG	+	chr8_3:6448233-6448252	None:intergenic	15.0%
!!!	GTAATTGTATTTTATTTTGT+AGG	-	chr8_3:6447245-6447264	Msa1272680:CDS	15.0%
!!!	AATTGTATTTTATTTTGTAG+GGG	-	chr8_3:6447247-6447266	Msa1272680:CDS	15.0%
!!	TAAACATAGTGAATAATATA+AGG	+	chr8_3:6448233-6448252	None:intergenic	15.0%
!!	AAGAAACTCATAAAATCATA+TGG	+	chr8_3:6447175-6447194	None:intergenic	20.0%
!!!	TAAGCTTCAAAATTTTCAAA+GGG	+	chr8_3:6447331-6447350	None:intergenic	20.0%
!!!	ATAAGCTTCAAAATTTTCAA+AGG	+	chr8_3:6447332-6447351	None:intergenic	20.0%
!!!	TTAAGATTTGAGTTTGATTT+TGG	-	chr8_3:6447472-6447491	Msa1272680:intron	20.0%
!!	AAATTTGACCAAATATATAC+AGG	-	chr8_3:6447888-6447907	Msa1272680:CDS	20.0%
!!	TGAAAATACCTGTATATATT+TGG	+	chr8_3:6447899-6447918	None:intergenic	20.0%
!!	TTCCATAAAAGAACATAAAA+AGG	-	chr8_3:6448028-6448047	Msa1272680:intron	20.0%
!!!	TTCCTTTTTATGTTCTTTTA+TGG	+	chr8_3:6448033-6448052	None:intergenic	20.0%
!!	ATGATGAATTTCTATTACTT+TGG	+	chr8_3:6448165-6448184	None:intergenic	20.0%
!!	AAAGTAATAGAAATTCATCA+TGG	-	chr8_3:6448164-6448183	Msa1272680:CDS	20.0%
!!	AAGAAACTCATAAAATCATA+TGG	+	chr8_3:6447175-6447194	None:intergenic	20.0%
!!!	TAAGCTTCAAAATTTTCAAA+GGG	+	chr8_3:6447331-6447350	None:intergenic	20.0%
!!!	ATAAGCTTCAAAATTTTCAA+AGG	+	chr8_3:6447332-6447351	None:intergenic	20.0%
!!!	TTAAGATTTGAGTTTGATTT+TGG	-	chr8_3:6447472-6447491	Msa1272680:intron	20.0%
!!	AAATTTGACCAAATATATAC+AGG	-	chr8_3:6447888-6447907	Msa1272680:CDS	20.0%
!!	TGAAAATACCTGTATATATT+TGG	+	chr8_3:6447899-6447918	None:intergenic	20.0%
!!	TTCCATAAAAGAACATAAAA+AGG	-	chr8_3:6448028-6448047	Msa1272680:intron	20.0%
!!!	TTCCTTTTTATGTTCTTTTA+TGG	+	chr8_3:6448033-6448052	None:intergenic	20.0%
!!	ATGATGAATTTCTATTACTT+TGG	+	chr8_3:6448165-6448184	None:intergenic	20.0%
!!	AAAGTAATAGAAATTCATCA+TGG	-	chr8_3:6448164-6448183	Msa1272680:CDS	20.0%
!	AGAAGAAAAGAAAGATGAAA+AGG	-	chr8_3:6446996-6447015	Msa1272680:CDS	25.0%
!	GAAGAAAAGAAAGATGAAAA+GGG	-	chr8_3:6446997-6447016	Msa1272680:CDS	25.0%
!	TGAAAAGGGAAAAGATAAAA+AGG	-	chr8_3:6447011-6447030	Msa1272680:CDS	25.0%
!	GTAGAAATGAATATTGAGAA+AGG	-	chr8_3:6447278-6447297	Msa1272680:CDS	25.0%
!	GCCTAAAGAGATTATTATTA+CGG	-	chr8_3:6447400-6447419	Msa1272680:intron	25.0%
!	TCCGTAATAATAATCTCTTT+AGG	+	chr8_3:6447404-6447423	None:intergenic	25.0%
!	AAAGTTAATTTCATTCATGC+AGG	+	chr8_3:6447612-6447631	None:intergenic	25.0%
!!	GCTTGATTAATATACGTTTT+AGG	+	chr8_3:6447750-6447769	None:intergenic	25.0%
!	CACATCAAACTTAATTAACA+TGG	+	chr8_3:6447865-6447884	None:intergenic	25.0%
!	ACGAGATGAGATTAAAATAA+AGG	-	chr8_3:6448193-6448212	Msa1272680:CDS	25.0%
!	AGAAGAAAAGAAAGATGAAA+AGG	-	chr8_3:6446996-6447015	Msa1272680:CDS	25.0%
!	GAAGAAAAGAAAGATGAAAA+GGG	-	chr8_3:6446997-6447016	Msa1272680:CDS	25.0%
!	TGAAAAGGGAAAAGATAAAA+AGG	-	chr8_3:6447011-6447030	Msa1272680:CDS	25.0%
!	GTAGAAATGAATATTGAGAA+AGG	-	chr8_3:6447278-6447297	Msa1272680:CDS	25.0%
!	GCCTAAAGAGATTATTATTA+CGG	-	chr8_3:6447400-6447419	Msa1272680:intron	25.0%
!	TCCGTAATAATAATCTCTTT+AGG	+	chr8_3:6447404-6447423	None:intergenic	25.0%
!	AAAGTTAATTTCATTCATGC+AGG	+	chr8_3:6447612-6447631	None:intergenic	25.0%
!!	GCTTGATTAATATACGTTTT+AGG	+	chr8_3:6447750-6447769	None:intergenic	25.0%
!	CACATCAAACTTAATTAACA+TGG	+	chr8_3:6447865-6447884	None:intergenic	25.0%
!	ACGAGATGAGATTAAAATAA+AGG	-	chr8_3:6448193-6448212	Msa1272680:CDS	25.0%
	TATTGAGAAAGGAGAAATCA+AGG	-	chr8_3:6447289-6447308	Msa1272680:CDS	30.0%
	TATTACGGATAAAAAGCCAA+AGG	-	chr8_3:6447415-6447434	Msa1272680:intron	30.0%
!!	ATTTGAGTTTGATTTTGGTG+TGG	-	chr8_3:6447477-6447496	Msa1272680:intron	30.0%
	CGTATATTAATCAAGCACAA+AGG	-	chr8_3:6447754-6447773	Msa1272680:intron	30.0%
	CTCAAAGTCTAATAGTTGAA+GGG	-	chr8_3:6447940-6447959	Msa1272680:CDS	30.0%
	AAAGGAAGAAAAGAAAGAGA+AGG	-	chr8_3:6448046-6448065	Msa1272680:intron	30.0%
	AAGGAAGAAAAGAAAGAGAA+GGG	-	chr8_3:6448047-6448066	Msa1272680:intron	30.0%
	TTCTCATCACTGAATAATTG+TGG	+	chr8_3:6448260-6448279	None:intergenic	30.0%
	TAGGAAATAGAACAGGAATT+AGG	+	chr8_3:6448284-6448303	None:intergenic	30.0%
	TATTGAGAAAGGAGAAATCA+AGG	-	chr8_3:6447289-6447308	Msa1272680:CDS	30.0%
	TATTACGGATAAAAAGCCAA+AGG	-	chr8_3:6447415-6447434	Msa1272680:intron	30.0%
!!	ATTTGAGTTTGATTTTGGTG+TGG	-	chr8_3:6447477-6447496	Msa1272680:intron	30.0%
	CGTATATTAATCAAGCACAA+AGG	-	chr8_3:6447754-6447773	Msa1272680:intron	30.0%
	CTCAAAGTCTAATAGTTGAA+GGG	-	chr8_3:6447940-6447959	Msa1272680:CDS	30.0%
	AAAGGAAGAAAAGAAAGAGA+AGG	-	chr8_3:6448046-6448065	Msa1272680:intron	30.0%
	AAGGAAGAAAAGAAAGAGAA+GGG	-	chr8_3:6448047-6448066	Msa1272680:intron	30.0%
	TTCTCATCACTGAATAATTG+TGG	+	chr8_3:6448260-6448279	None:intergenic	30.0%
	TAGGAAATAGAACAGGAATT+AGG	+	chr8_3:6448284-6448303	None:intergenic	30.0%
	AACTTGCATTGTCAAGAATG+TGG	-	chr8_3:6447084-6447103	Msa1272680:CDS	35.0%
	ACTTGCATTGTCAAGAATGT+GGG	-	chr8_3:6447085-6447104	Msa1272680:CDS	35.0%
	AAGCATCTCTTAACTACTCA+AGG	-	chr8_3:6447120-6447139	Msa1272680:CDS	35.0%
	AAAGGAGAAATCAAGGCAAA+AGG	-	chr8_3:6447296-6447315	Msa1272680:CDS	35.0%
	AAGGAGAAATCAAGGCAAAA+GGG	-	chr8_3:6447297-6447316	Msa1272680:CDS	35.0%
!	ATCTCTTTAGGCTTCACTTT+TGG	+	chr8_3:6447392-6447411	None:intergenic	35.0%
	TAAAAAGCCAAAGGAAGCTA+AGG	-	chr8_3:6447424-6447443	Msa1272680:intron	35.0%
	TAGACTTTGAGCTTTCTTGT+CGG	+	chr8_3:6447931-6447950	None:intergenic	35.0%
	GCTCAAAGTCTAATAGTTGA+AGG	-	chr8_3:6447939-6447958	Msa1272680:CDS	35.0%
	TGTCAATTTCTCCACTTCAA+TGG	+	chr8_3:6447967-6447986	None:intergenic	35.0%
	GGGCAAAGAAGAAGAAAAAA+AGG	-	chr8_3:6448067-6448086	Msa1272680:intron	35.0%
	AAAGGAAGAAAAGAAAGACC+AGG	-	chr8_3:6448085-6448104	Msa1272680:intron	35.0%
	AAGGAAGAAAAGAAAGACCA+GGG	-	chr8_3:6448086-6448105	Msa1272680:intron	35.0%
	AGAAGAAGAAAAGAAGGACA+AGG	-	chr8_3:6448112-6448131	Msa1272680:intron	35.0%
	GAAGAAGAAAAGAAGGACAA+GGG	-	chr8_3:6448113-6448132	Msa1272680:intron	35.0%
	AACTTGCATTGTCAAGAATG+TGG	-	chr8_3:6447084-6447103	Msa1272680:CDS	35.0%
	ACTTGCATTGTCAAGAATGT+GGG	-	chr8_3:6447085-6447104	Msa1272680:CDS	35.0%
	AAGCATCTCTTAACTACTCA+AGG	-	chr8_3:6447120-6447139	Msa1272680:CDS	35.0%
	AAAGGAGAAATCAAGGCAAA+AGG	-	chr8_3:6447296-6447315	Msa1272680:CDS	35.0%
	AAGGAGAAATCAAGGCAAAA+GGG	-	chr8_3:6447297-6447316	Msa1272680:CDS	35.0%
!	ATCTCTTTAGGCTTCACTTT+TGG	+	chr8_3:6447392-6447411	None:intergenic	35.0%
	TAAAAAGCCAAAGGAAGCTA+AGG	-	chr8_3:6447424-6447443	Msa1272680:intron	35.0%
	TAGACTTTGAGCTTTCTTGT+CGG	+	chr8_3:6447931-6447950	None:intergenic	35.0%
	GCTCAAAGTCTAATAGTTGA+AGG	-	chr8_3:6447939-6447958	Msa1272680:CDS	35.0%
	TGTCAATTTCTCCACTTCAA+TGG	+	chr8_3:6447967-6447986	None:intergenic	35.0%
	GGGCAAAGAAGAAGAAAAAA+AGG	-	chr8_3:6448067-6448086	Msa1272680:intron	35.0%
	AAAGGAAGAAAAGAAAGACC+AGG	-	chr8_3:6448085-6448104	Msa1272680:intron	35.0%
	AAGGAAGAAAAGAAAGACCA+GGG	-	chr8_3:6448086-6448105	Msa1272680:intron	35.0%
	AGAAGAAGAAAAGAAGGACA+AGG	-	chr8_3:6448112-6448131	Msa1272680:intron	35.0%
	GAAGAAGAAAAGAAGGACAA+GGG	-	chr8_3:6448113-6448132	Msa1272680:intron	35.0%
	CTTACATCCTTAGCTTCCTT+TGG	+	chr8_3:6447434-6447453	None:intergenic	40.0%
	CATGCATTGTGACAAATGTG+AGG	-	chr8_3:6447720-6447739	Msa1272680:intron	40.0%
!	AAGAGTGCATAGAAATGCAG+AGG	-	chr8_3:6448001-6448020	Msa1272680:intron	40.0%
!	TCTTTTCTTCTTCTTTGCCC+TGG	+	chr8_3:6448106-6448125	None:intergenic	40.0%
	GGGCAAAGAAGAAGAAAAGA+AGG	-	chr8_3:6448106-6448125	Msa1272680:intron	40.0%
	CTTACATCCTTAGCTTCCTT+TGG	+	chr8_3:6447434-6447453	None:intergenic	40.0%
	CATGCATTGTGACAAATGTG+AGG	-	chr8_3:6447720-6447739	Msa1272680:intron	40.0%
!	AAGAGTGCATAGAAATGCAG+AGG	-	chr8_3:6448001-6448020	Msa1272680:intron	40.0%
!	TCTTTTCTTCTTCTTTGCCC+TGG	+	chr8_3:6448106-6448125	None:intergenic	40.0%
	GGGCAAAGAAGAAGAAAAGA+AGG	-	chr8_3:6448106-6448125	Msa1272680:intron	40.0%
	GCCAATTGTCCGAACTATCA+CGG	-	chr8_3:6447687-6447706	Msa1272680:intron	45.0%
	ACCGTGATAGTTCGGACAAT+TGG	+	chr8_3:6447691-6447710	None:intergenic	45.0%
	GAACCTTCACCGTGATAGTT+CGG	+	chr8_3:6447699-6447718	None:intergenic	45.0%
	AGTTGAAGGGACCATTGAAG+TGG	-	chr8_3:6447953-6447972	Msa1272680:CDS	45.0%
	AAGAAGGACAAGGGCAAAGA+AGG	-	chr8_3:6448122-6448141	Msa1272680:intron	45.0%
	GCCAATTGTCCGAACTATCA+CGG	-	chr8_3:6447687-6447706	Msa1272680:intron	45.0%
	ACCGTGATAGTTCGGACAAT+TGG	+	chr8_3:6447691-6447710	None:intergenic	45.0%
	GAACCTTCACCGTGATAGTT+CGG	+	chr8_3:6447699-6447718	None:intergenic	45.0%
	AGTTGAAGGGACCATTGAAG+TGG	-	chr8_3:6447953-6447972	Msa1272680:CDS	45.0%
	AAGAAGGACAAGGGCAAAGA+AGG	-	chr8_3:6448122-6448141	Msa1272680:intron	45.0%
!!!	AATTAACTTTAAATTAATTT+TGG	-	chr8_3:6447622-6447641	Msa1272680:intron	5.0%
!!!	ATTAACTTTAAATTAATTTT+GGG	-	chr8_3:6447623-6447642	Msa1272680:intron	5.0%
!!!	AATTAACTTTAAATTAATTT+TGG	-	chr8_3:6447622-6447641	Msa1272680:intron	5.0%
!!!	ATTAACTTTAAATTAATTTT+GGG	-	chr8_3:6447623-6447642	Msa1272680:intron	5.0%
!!	TTTTGGTGTGGCCGTAACTC+AGG	-	chr8_3:6447489-6447508	Msa1272680:intron	50.0%
!	TTTGGTGTGGCCGTAACTCA+GGG	-	chr8_3:6447490-6447509	Msa1272680:intron	50.0%
	TGTCCGAACTATCACGGTGA+AGG	-	chr8_3:6447693-6447712	Msa1272680:intron	50.0%
!!	TTTTGGTGTGGCCGTAACTC+AGG	-	chr8_3:6447489-6447508	Msa1272680:intron	50.0%
!	TTTGGTGTGGCCGTAACTCA+GGG	-	chr8_3:6447490-6447509	Msa1272680:intron	50.0%
	TGTCCGAACTATCACGGTGA+AGG	-	chr8_3:6447693-6447712	Msa1272680:intron	50.0%
	TTGGTGTGGCCGTAACTCAG+GGG	-	chr8_3:6447491-6447510	Msa1272680:intron	55.0%
	TCCTCCCTTCCCCTGAGTTA+CGG	+	chr8_3:6447503-6447522	None:intergenic	55.0%
	TTGGTGTGGCCGTAACTCAG+GGG	-	chr8_3:6447491-6447510	Msa1272680:intron	55.0%
	TCCTCCCTTCCCCTGAGTTA+CGG	+	chr8_3:6447503-6447522	None:intergenic	55.0%
	TGTGGCCGTAACTCAGGGGA+AGG	-	chr8_3:6447495-6447514	Msa1272680:intron	60.0%
	GTGGCCGTAACTCAGGGGAA+GGG	-	chr8_3:6447496-6447515	Msa1272680:intron	60.0%
	TGTGGCCGTAACTCAGGGGA+AGG	-	chr8_3:6447495-6447514	Msa1272680:intron	60.0%
	GTGGCCGTAACTCAGGGGAA+GGG	-	chr8_3:6447496-6447515	Msa1272680:intron	60.0%
	GCCGTAACTCAGGGGAAGGG+AGG	-	chr8_3:6447499-6447518	Msa1272680:intron	65.0%
	GCCGTAACTCAGGGGAAGGG+AGG	-	chr8_3:6447499-6447518	Msa1272680:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	6446982	6448304	6446982	ID=Msa1272680;Name=Msa1272680
chr8_3	mRNA	6446982	6448304	6446982	ID=Msa1272680-mRNA-1;Parent=Msa1272680;Name=Msa1272680-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0.66\|0.25\|1\|1\|1\|4\|0\|274
chr8_3	exon	6448145	6448304	6448145	ID=Msa1272680-mRNA-1:exon:2402;Parent=Msa1272680-mRNA-1
chr8_3	exon	6447838	6448019	6447838	ID=Msa1272680-mRNA-1:exon:2401;Parent=Msa1272680-mRNA-1
chr8_3	exon	6447511	6447598	6447511	ID=Msa1272680-mRNA-1:exon:2400;Parent=Msa1272680-mRNA-1
chr8_3	exon	6446982	6447376	6446982	ID=Msa1272680-mRNA-1:exon:2399;Parent=Msa1272680-mRNA-1
chr8_3	CDS	6448145	6448304	6448145	ID=Msa1272680-mRNA-1:cds;Parent=Msa1272680-mRNA-1
chr8_3	CDS	6447838	6448019	6447838	ID=Msa1272680-mRNA-1:cds;Parent=Msa1272680-mRNA-1
chr8_3	CDS	6447511	6447598	6447511	ID=Msa1272680-mRNA-1:cds;Parent=Msa1272680-mRNA-1
chr8_3	CDS	6446982	6447376	6446982	ID=Msa1272680-mRNA-1:cds;Parent=Msa1272680-mRNA-1

Gene Sequence

>Msa1272680

ATGGCAGGAGGGAAAGAAGAAAAGAAAGATGAAAAGGGAAAAGATAAAAAGGAAGAAAAGAAGAAAGATGAGATTGAATTGATCACTGCTATTTACAAATTGAACTTGCATTGTCAAGAATGTGGGAACAAGATCAAGAAGCATCTCTTAACTACTCAAGGGGTACAGACTGTAGAAATGAATATTGAGAAAGGAGAAATCAAGGCAAAAGGGAAATTAGACCCTTTGAAAATTTTGAAGCTTATAGAGAAGAAGAGCAATAATAAAGTTGAATTAATATCACCAAAAGTGAAGCCTAAAGAGATTATTATTACGGATAAAAAGCCAAAGGAAGCTAAGGATCCAATTGTCCGAACTATCACGGTGAAGGTTCACATGCATTGTGACAAATGTGAGGCTGACCTAAAACGTATATTAATCAAGCACAAAGGTATTTTCAATGTTAAAACCGACAAGAAAGCTCAAAGTCTAATAGTTGAAGGGACCATTGAAGTGGAGAAATTGACATCATTTTTGAAAAAAAGAGTGCATAGAAATGCAGAGGTTATTTCCATAAAAGAACATAAAAAGGAAGAAAAGAAAGAGAAGGGCAAAGAAGAAGAAAAAAAGGAAGAAAAGAAAGACCAGGGCAAAGAAGAAGAAAAGAAGGACAAGGGCAAAGAAGGAAAGTCATCAGAATCAACCAAAGTAATAGAAATTCATCATGGAGATACACGAGATGAGATTAAAATAAAGGACAATAATAATGTTCCTTATATTATTCACTATGTTTATGCACCACAATTATTCAGTGATGAGAATCCTAATTCCTGTTCTATTTCCTAG

Protein sequence

>Msa1272680

MAGGKEEKKDEKGKDKKEEKKKDEIELITAIYKLNLHCQECGNKIKKHLLTTQGVQTVEMNIEKGEIKAKGKLDPLKILKLIEKKSNNKVELISPKVKPKEIIITDKKPKEAKDPIVRTITVKVHMHCDKCEADLKRILIKHKGIFNVKTDKKAQSLIVEGTIEVEKLTSFLKKRVHRNAEVISIKEHKKEEKKEKGKEEEKKEEKKDQGKEEEKKDKGKEGKSSESTKVIEIHHGDTRDEIKIKDNNNVPYIIHYVYAPQLFSDENPNSCSIS*