AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356100 MtrunA17_Chr7g0249461 97.312 186 5 0 1 186 1 186 2.20e-130 363
Msa1356100 MtrunA17_Chr5g0404831 37.736 106 62 2 79 181 8 112 2.32e-18 76.6
Msa1356100 MtrunA17_Chr1g0155721 40.000 105 59 2 79 180 6 109 3.90e-17 73.6
Msa1356100 MtrunA17_Chr3g0142051 42.683 82 46 1 99 180 29 109 6.45e-16 70.5
Msa1356100 MtrunA17_Chr7g0216481 39.744 78 46 1 99 176 49 125 2.88e-15 68.9
Msa1356100 MtrunA17_Chr3g0125821 32.867 143 77 6 34 171 31 159 1.75e-13 65.5
Msa1356100 MtrunA17_Chr8g0334481 36.905 84 51 2 94 176 43 125 3.05e-13 63.9
Msa1356100 MtrunA17_Chr7g0245141 39.744 78 46 1 99 176 47 123 7.52e-12 60.1
Msa1356100 MtrunA17_Chr6g0488561 33.824 68 44 1 93 160 90 156 3.17e-11 60.1
Msa1356100 MtrunA17_Chr8g0393201 43.836 73 40 1 99 171 250 321 4.91e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356100 AT5G16400.1 81.679 131 22 1 56 186 57 185 7.69e-73 218
Msa1356100 AT3G02730.1 63.587 184 56 3 4 186 2 175 5.39e-72 215
Msa1356100 AT3G51030.1 44.737 76 41 1 101 176 31 105 7.17e-17 73.2
Msa1356100 AT5G42980.1 37.975 79 48 1 99 177 28 105 4.25e-16 71.2
Msa1356100 AT5G39950.1 38.202 89 52 2 98 185 47 133 8.66e-16 70.9
Msa1356100 AT1G45145.1 35.897 78 49 1 99 176 28 104 1.74e-15 69.7
Msa1356100 AT1G19730.1 34.314 102 62 4 79 176 6 106 3.95e-15 68.6
Msa1356100 AT1G59730.1 31.707 123 76 3 65 184 11 128 7.13e-13 63.2
Msa1356100 AT4G26160.1 33.673 98 61 3 87 181 102 198 3.05e-12 63.2
Msa1356100 AT4G29670.2 32.432 74 49 1 87 160 112 184 2.66e-11 60.8
Msa1356100 AT1G69880.1 37.209 86 51 2 93 176 52 136 3.39e-11 58.9
Msa1356100 AT4G29670.1 32.432 74 49 1 87 160 112 184 3.52e-11 60.5
Msa1356100 AT3G08710.2 35.897 78 49 1 99 176 46 122 4.30e-11 58.5
Msa1356100 AT3G08710.3 35.897 78 49 1 99 176 46 122 4.30e-11 58.5
Msa1356100 AT3G08710.1 35.897 78 49 1 99 176 46 122 4.30e-11 58.5

Find 100 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTAATTCTTTGTATTT+TGG 0.153277 tig0015447:+11097 None:intergenic
GCCATCCCAAAGTGTATTTC+TGG 0.177064 tig0015447:-10385 Msa1356100:three_prime_UTR
AGAATTAGCTGAGAAGTATT+TGG 0.241894 tig0015447:-11086 Msa1356100:CDS
AACACTCTTGGAATTCAAAA+TGG 0.249767 tig0015447:+13373 None:intergenic
ATCTCTGCACCTCCCCTAAA+TGG 0.258474 tig0015447:-13478 Msa1356100:CDS
CCTAATGTACATGGGTATTA+TGG 0.259369 tig0015447:-10503 Msa1356100:three_prime_UTR
CACCTTAATTCCTAGCTCTT+TGG 0.269465 tig0015447:+10926 None:intergenic
AATTGTGATTTGTATTCTTT+TGG 0.274862 tig0015447:+13733 None:intergenic
TAATCCATACCTTGTTATCT+TGG 0.303298 tig0015447:+11035 None:intergenic
TCATTAAGTGTATGGTGTTT+TGG 0.304234 tig0015447:+10474 None:intergenic
TGGAGCTAAATATGATGATT+TGG 0.335332 tig0015447:-10853 Msa1356100:CDS
GGCCAAAGAGCTAGGAATTA+AGG 0.347175 tig0015447:-10928 Msa1356100:CDS
TGATCATGGTCTATCTATAA+AGG 0.357562 tig0015447:-10609 Msa1356100:three_prime_UTR
ACGGTGGTGCCAATCCATTT+AGG 0.358436 tig0015447:+13464 None:intergenic
CGGTGGTGCCAATCCATTTA+GGG 0.375482 tig0015447:+13465 None:intergenic
CGTTAATATGAGGGTGGAAT+TGG 0.376541 tig0015447:+13652 None:intergenic
CCATAATACCCATGTACATT+AGG 0.379105 tig0015447:+10503 None:intergenic
GATTGTGTATGATATTCTTT+TGG 0.384247 tig0015447:+13710 None:intergenic
TTGTCCAGCCGGAATGATCT+TGG 0.396843 tig0015447:+10422 None:intergenic
TTGCCCTTGGAGTTTGTGTA+TGG 0.405123 tig0015447:+13617 None:intergenic
TTCTGTTATCAACTTGATCA+TGG 0.406946 tig0015447:-10623 Msa1356100:three_prime_UTR
AAGGTTGTAAAAGAAGTAAC+TGG 0.408021 tig0015447:-10873 Msa1356100:CDS
GCTCTTGAGATTAACACTCT+TGG 0.426875 tig0015447:+13361 None:intergenic
TGTCCAGCCGGAATGATCTT+GGG 0.431711 tig0015447:+10423 None:intergenic
AATTCCTAGCTCTTTGGCCA+AGG 0.431968 tig0015447:+10932 None:intergenic
TCTCGCACCCAAGATCATTC+CGG 0.433558 tig0015447:-10430 Msa1356100:three_prime_UTR
GATGTGAAGAGGAGGAAGAG+TGG 0.442221 tig0015447:+13571 None:intergenic
GCATGTGGAGAGTGAAGAAT+TGG 0.443078 tig0015447:+13519 None:intergenic
ATTGGTAAATTTGAATGAAA+CGG 0.444192 tig0015447:+13670 None:intergenic
CAAGGGATACCTAATGTACA+TGG 0.446648 tig0015447:-10512 Msa1356100:three_prime_UTR
GAATTGGACTCTCTGAGATA+TGG 0.447692 tig0015447:+13535 None:intergenic
TTGTTGCGGTCGTTAATATG+AGG 0.450430 tig0015447:+13642 None:intergenic
TTCGTCCAGAAATACACTTT+GGG 0.462223 tig0015447:+10380 None:intergenic
GCATCCAATTATGTAAAAGA+AGG 0.469447 tig0015447:-13772 None:intergenic
TTTCGTCCAGAAATACACTT+TGG 0.473177 tig0015447:+10379 None:intergenic
ATGTGAAGAGGAGGAAGAGT+GGG 0.484769 tig0015447:+13572 None:intergenic
ATTCCTAGCTCTTTGGCCAA+GGG 0.487064 tig0015447:+10933 None:intergenic
AGATTAAGAGCCATTGGTGT+TGG 0.490679 tig0015447:+13497 None:intergenic
GCTAGACGTCATTAAGTGTA+TGG 0.499786 tig0015447:+10466 None:intergenic
TTTCTGTGTAAGATCAAGCT+TGG 0.505371 tig0015447:-13315 Msa1356100:CDS
CAGCCCTTGGCCAAAGAGCT+AGG 0.508539 tig0015447:-10936 Msa1356100:CDS
GCTAGAACGAACTGTGTCAA+TGG 0.511358 tig0015447:+10824 None:intergenic
ATTGATTATTCCCTATGCAT+AGG 0.511444 tig0015447:-10666 Msa1356100:three_prime_UTR
ACTGGCCCCACCGTGACGGT+TGG 0.511801 tig0015447:-13287 Msa1356100:CDS
AGATCAAGCTTGGAAACTAC+TGG 0.514531 tig0015447:-13305 Msa1356100:CDS
TTTGGAGCTATCACTTTGCA+AGG 0.518801 tig0015447:+11115 None:intergenic
TTGATTATTCCCTATGCATA+GGG 0.522813 tig0015447:-10665 Msa1356100:three_prime_UTR
GAGATATGGTCGTGTGGTGG+TGG 0.529036 tig0015447:+13549 None:intergenic
AGCTTAAGCTTGAGGAAGAG+TGG 0.529887 tig0015447:-13341 Msa1356100:CDS
ATCTCAAGAGCTTAAGCTTG+AGG 0.533549 tig0015447:-13349 Msa1356100:CDS
TGAAATGACGGTGTTGCCCT+TGG 0.535828 tig0015447:+13604 None:intergenic
TGCACCTCCCCTAAATGGAT+TGG 0.536322 tig0015447:-13473 Msa1356100:CDS
GTGCAGAGATTAAGAGCCAT+TGG 0.539401 tig0015447:+13491 None:intergenic
GTGTGGTGGTGGATGTGAAG+AGG 0.557719 tig0015447:+13560 None:intergenic
TCACCGGCGGCATTAACGAT+GGG 0.558656 tig0015447:+13230 None:intergenic
ATCACCGGCGGCATTAACGA+TGG 0.564737 tig0015447:+13229 None:intergenic
GCTTAAGCTTGAGGAAGAGT+GGG 0.565601 tig0015447:-13340 Msa1356100:CDS
GCACCCAAGATCATTCCGGC+TGG 0.567036 tig0015447:-10426 Msa1356100:three_prime_UTR
CATCCAATTATGTAAAAGAA+GGG 0.571110 tig0015447:-13771 None:intergenic
TGCATTAGAAATACTTACAG+AGG 0.576470 tig0015447:+10748 None:intergenic
AACTACTGGCCCCACCGTGA+CGG 0.577342 tig0015447:-13291 Msa1356100:CDS
AAGTTAACAAGGATACGTTC+TGG 0.581922 tig0015447:-13253 Msa1356100:CDS
TCTCCACATGCCAACACCAA+TGG 0.584573 tig0015447:-13507 Msa1356100:exon
TCCAGAAATACACTTTGGGA+TGG 0.585187 tig0015447:+10384 None:intergenic
TCTTCATCGAAGCTATCACT+TGG 0.591272 tig0015447:-13428 Msa1356100:CDS
AATTGAGTCAATGCTGTCAA+GGG 0.592000 tig0015447:-10529 Msa1356100:three_prime_UTR
GAGCCATTGGTGTTGGCATG+TGG 0.594989 tig0015447:+13504 None:intergenic
TGTTGCGGTCGTTAATATGA+GGG 0.597154 tig0015447:+13643 None:intergenic
ACTTGTCCAACCGTCACGGT+GGG 0.599149 tig0015447:+13281 None:intergenic
CACTTAATGACGTCTAGCAA+CGG 0.603031 tig0015447:-10461 Msa1356100:three_prime_UTR
CTCTCTGAGATATGGTCGTG+TGG 0.615715 tig0015447:+13543 None:intergenic
TCCTCGACATGTACACCCAA+TGG 0.618148 tig0015447:-13196 Msa1356100:intron
GGTGTACATGTCGAGGACGA+CGG 0.623867 tig0015447:+13202 None:intergenic
AACTTGTCCAACCGTCACGG+TGG 0.625736 tig0015447:+13280 None:intergenic
GCATTAGAAATACTTACAGA+GGG 0.629622 tig0015447:+10749 None:intergenic
TGCGGTCGTTAATATGAGGG+TGG 0.630527 tig0015447:+13646 None:intergenic
TAAAATTCTGAAAGACAACA+AGG 0.632667 tig0015447:-10892 Msa1356100:CDS
GGGAGTTATGAATGAAATGA+CGG 0.633006 tig0015447:+13592 None:intergenic
ACCATTGGGTGTACATGTCG+AGG 0.633123 tig0015447:+13195 None:intergenic
CTTGTCCAACCGTCACGGTG+GGG 0.634010 tig0015447:+13282 None:intergenic
GTTTGTGTATGGTATTGTTG+CGG 0.634269 tig0015447:+13628 None:intergenic
AAATTGAGTCAATGCTGTCA+AGG 0.635105 tig0015447:-10530 Msa1356100:three_prime_UTR
GGTGGTGCCAATCCATTTAG+GGG 0.641245 tig0015447:+13466 None:intergenic
ACAAGTTACTGAAGTTAACA+AGG 0.643513 tig0015447:-13264 Msa1356100:CDS
TGAAGAAGTACTATCGAAGA+CGG 0.654052 tig0015447:+13445 None:intergenic
AATACCATACACAAACTCCA+AGG 0.658663 tig0015447:-13621 Msa1356100:five_prime_UTR
AGTAACTTGTCCAACCGTCA+CGG 0.658820 tig0015447:+13277 None:intergenic
TCTGAGATATGGTCGTGTGG+TGG 0.667266 tig0015447:+13546 None:intergenic
ATACCATACACAAACTCCAA+GGG 0.668173 tig0015447:-13620 Msa1356100:five_prime_UTR
TGGTGGTGGATGTGAAGAGG+AGG 0.669679 tig0015447:+13563 None:intergenic
CAAAGAGCTAGGAATTAAGG+TGG 0.670646 tig0015447:-10925 Msa1356100:CDS
TGATTGCAACCAAGATAACA+AGG 0.674067 tig0015447:-11044 Msa1356100:intron
GGTGCCAATCCATTTAGGGG+AGG 0.674114 tig0015447:+13469 None:intergenic
AAGGGATACCTAATGTACAT+GGG 0.679919 tig0015447:-10511 Msa1356100:three_prime_UTR
TGCAATTGTAAGCTGCTGAG+TGG 0.681997 tig0015447:-10729 Msa1356100:three_prime_UTR
TCATGGTCTATCTATAAAGG+TGG 0.684533 tig0015447:-10606 Msa1356100:three_prime_UTR
TACAGCTTACAACAACAACA+TGG 0.685248 tig0015447:+10689 None:intergenic
ATTCCGGCTGGACAAAACAC+AGG 0.688292 tig0015447:-10414 Msa1356100:three_prime_UTR
AAGCTGCTGAGTGGAAGATG+AGG 0.731291 tig0015447:-10720 Msa1356100:three_prime_UTR
AGAAGTACTATCGAAGACGG+TGG 0.755717 tig0015447:+13448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATTAGTTTTTTAAAA+AGG - tig0015447:12687-12706 Msa1356100:intron 10.0%
!!! TTTCATTAGTTTTTTAAAAA+GGG - tig0015447:12688-12707 Msa1356100:intron 10.0%
!! ATGAAATAAAATATACCATT+GGG + tig0015447:10947-10966 None:intergenic 15.0%
!! AATGAAATAAAATATACCAT+TGG + tig0015447:10948-10967 None:intergenic 15.0%
!! GCATTGTATATTAAAATATA+AGG + tig0015447:12203-12222 None:intergenic 15.0%
!! GATAAAAAGATTAATTGATT+TGG - tig0015447:12750-12769 Msa1356100:intron 15.0%
!!! AATTGTGATTTGTATTCTTT+TGG + tig0015447:10395-10414 None:intergenic 20.0%
!! ATTGGTAAATTTGAATGAAA+CGG + tig0015447:10458-10477 None:intergenic 20.0%
!! TTCATGATAAGAATAGTTAA+TGG + tig0015447:10996-11015 None:intergenic 20.0%
!!! ATGATTTGGTAAACTATAAT+TGG - tig0015447:11575-11594 Msa1356100:intron 20.0%
!!! AAAAGGTTTTTTCTAAACTA+AGG - tig0015447:11995-12014 Msa1356100:intron 20.0%
!!! AAAGGTTTTTTCTAAACTAA+GGG - tig0015447:11996-12015 Msa1356100:intron 20.0%
!!! TTTTAATTGTGAAACAATCA+AGG - tig0015447:12044-12063 Msa1356100:intron 20.0%
!! TTTAATTGTGAAACAATCAA+GGG - tig0015447:12045-12064 Msa1356100:intron 20.0%
!!! TACTAAAGTACTTATTTTGT+AGG - tig0015447:12300-12319 Msa1356100:intron 20.0%
!! CAATTAAACATCATACTTAT+CGG - tig0015447:12398-12417 Msa1356100:intron 20.0%
!! CTAAATATAAAGTGTAGATT+TGG - tig0015447:12945-12964 Msa1356100:intron 20.0%
!!! TCTTTCAGAATTTTAAAAGT+GGG + tig0015447:13228-13247 None:intergenic 20.0%
!!! TGATATTTTTACATAGCAAA+GGG + tig0015447:13347-13366 None:intergenic 20.0%
!!! ATGATATTTTTACATAGCAA+AGG + tig0015447:13348-13367 None:intergenic 20.0%
!! GATTGTGTATGATATTCTTT+TGG + tig0015447:10418-10437 None:intergenic 25.0%
! ATGTCAATATTCTCTAAGTT+TGG + tig0015447:11322-11341 None:intergenic 25.0%
!! CTTATCATCATAAACCATTT+TGG + tig0015447:11386-11405 None:intergenic 25.0%
! AGCTTATGCTAATATCATTA+AGG - tig0015447:11443-11462 Msa1356100:intron 25.0%
!! CGTTCTCTAAATATGTTTTA+TGG - tig0015447:11526-11545 Msa1356100:intron 25.0%
!! TTTTAGCAAGCAATATGATT+TGG - tig0015447:11561-11580 Msa1356100:intron 25.0%
! TCATAAAGCACAATTGAAAA+CGG + tig0015447:11826-11845 None:intergenic 25.0%
! TACATTATATGATGAAGAGT+GGG - tig0015447:11972-11991 Msa1356100:intron 25.0%
!!! AAGGTTTTTTCTAAACTAAG+GGG - tig0015447:11997-12016 Msa1356100:intron 25.0%
!! GATATATGCATAAAAGGTTT+TGG + tig0015447:12088-12107 None:intergenic 25.0%
!!! GTGTTATTGACTTATGTTTT+AGG - tig0015447:12473-12492 Msa1356100:intron 25.0%
! TAAACTCAAAAATCAATCTC+TGG - tig0015447:12848-12867 Msa1356100:intron 25.0%
! TTCATTGTAAATCATATCCA+AGG + tig0015447:12975-12994 None:intergenic 25.0%
!! TGATTTACAATGAATTTTGC+AGG - tig0015447:12981-13000 Msa1356100:intron 25.0%
!! TCAGCTAATTCTTTGTATTT+TGG + tig0015447:13031-13050 None:intergenic 25.0%
! ACATAGTGTTTAATGGTTAT+TGG - tig0015447:13166-13185 Msa1356100:intron 25.0%
!!! GTCTTTCAGAATTTTAAAAG+TGG + tig0015447:13229-13248 None:intergenic 25.0%
!! TAAAATTCTGAAAGACAACA+AGG - tig0015447:13233-13252 Msa1356100:CDS 25.0%
AACACTCTTGGAATTCAAAA+TGG + tig0015447:10755-10774 None:intergenic 30.0%
ACAAGTTACTGAAGTTAACA+AGG - tig0015447:10861-10880 Msa1356100:CDS 30.0%
TAAGATGCTAATAGACTCTA+AGG - tig0015447:11123-11142 Msa1356100:CDS 30.0%
GATATCGATGTATCTTTATC+AGG + tig0015447:11292-11311 None:intergenic 30.0%
ACCAATCAATTAGAGAATGA+GGG - tig0015447:11350-11369 Msa1356100:intron 30.0%
GTTGAGTAAAACAGAAAACA+GGG + tig0015447:11663-11682 None:intergenic 30.0%
!! CGTTACTACTTACTTTTACT+TGG - tig0015447:11692-11711 Msa1356100:intron 30.0%
!!! TAGTTTTGTGACTTGATTGT+TGG - tig0015447:11764-11783 Msa1356100:intron 30.0%
ATAAAGCACAATTGAAAACG+GGG + tig0015447:11824-11843 None:intergenic 30.0%
CATAAAGCACAATTGAAAAC+GGG + tig0015447:11825-11844 None:intergenic 30.0%
ATCGTATCTCTATATAAGTG+AGG - tig0015447:11917-11936 Msa1356100:intron 30.0%
! GTTTAAGACAAATCTCTTCA+AGG - tig0015447:11939-11958 Msa1356100:intron 30.0%
GTACATTATATGATGAAGAG+TGG - tig0015447:11971-11990 Msa1356100:intron 30.0%
TAAACTAAGGGGTTTATTGT+AGG - tig0015447:12008-12027 Msa1356100:intron 30.0%
AAACTAAGGGGTTTATTGTA+GGG - tig0015447:12009-12028 Msa1356100:intron 30.0%
TGCATGGATATATGCATAAA+AGG + tig0015447:12094-12113 None:intergenic 30.0%
ATATACAATGCCTGAATTTG+AGG - tig0015447:12212-12231 Msa1356100:intron 30.0%
! CTTCTTTTTACCTCAAATTC+AGG + tig0015447:12225-12244 None:intergenic 30.0%
! GAATTTGAGGTAAAAAGAAG+AGG - tig0015447:12225-12244 Msa1356100:intron 30.0%
AAAAAGAAGAGGTAATTCAC+TGG - tig0015447:12236-12255 Msa1356100:intron 30.0%
TTTGTAGGCTGAATATCAAA+AGG - tig0015447:12315-12334 Msa1356100:intron 30.0%
GATGTTTAATTGTATGCCAA+AGG + tig0015447:12390-12409 None:intergenic 30.0%
AAACTAATGAAATGATCAGC+TGG + tig0015447:12680-12699 None:intergenic 30.0%
CATGATCCTTATAATAGTCA+TGG + tig0015447:12887-12906 None:intergenic 30.0%
ACACTTTATATTTAGCAGCA+GGG + tig0015447:12940-12959 None:intergenic 30.0%
TACACTTTATATTTAGCAGC+AGG + tig0015447:12941-12960 None:intergenic 30.0%
!! AGAATTAGCTGAGAAGTATT+TGG - tig0015447:13039-13058 Msa1356100:intron 30.0%
! TAATCCATACCTTGTTATCT+TGG + tig0015447:13093-13112 None:intergenic 30.0%
ACTGAATAGTAGATAGTCTA+TGG - tig0015447:13121-13140 Msa1356100:intron 30.0%
TAACCATTAAACACTATGTC+AGG + tig0015447:13165-13184 None:intergenic 30.0%
AAGGTTGTAAAAGAAGTAAC+TGG - tig0015447:13252-13271 Msa1356100:CDS 30.0%
TGGAGCTAAATATGATGATT+TGG - tig0015447:13272-13291 Msa1356100:CDS 30.0%
GCATTAGAAATACTTACAGA+GGG + tig0015447:13379-13398 None:intergenic 30.0%
TGCATTAGAAATACTTACAG+AGG + tig0015447:13380-13399 None:intergenic 30.0%
ATTGATTATTCCCTATGCAT+AGG - tig0015447:13459-13478 Msa1356100:CDS 30.0%
TTGATTATTCCCTATGCATA+GGG - tig0015447:13460-13479 Msa1356100:CDS 30.0%
TTCTGTTATCAACTTGATCA+TGG - tig0015447:13502-13521 Msa1356100:CDS 30.0%
TGATCATGGTCTATCTATAA+AGG - tig0015447:13516-13535 Msa1356100:exon 30.0%
! TCATTAAGTGTATGGTGTTT+TGG + tig0015447:13654-13673 None:intergenic 30.0%
GTTTGTGTATGGTATTGTTG+CGG + tig0015447:10500-10519 None:intergenic 35.0%
AATACCATACACAAACTCCA+AGG - tig0015447:10504-10523 Msa1356100:three_prime_UTR 35.0%
ATACCATACACAAACTCCAA+GGG - tig0015447:10505-10524 Msa1356100:three_prime_UTR 35.0%
GGGAGTTATGAATGAAATGA+CGG + tig0015447:10536-10555 None:intergenic 35.0%
!! TGAAGAAGTACTATCGAAGA+CGG + tig0015447:10683-10702 None:intergenic 35.0%
TTTCTGTGTAAGATCAAGCT+TGG - tig0015447:10810-10829 Msa1356100:exon 35.0%
AAGTTAACAAGGATACGTTC+TGG - tig0015447:10872-10891 Msa1356100:CDS 35.0%
AAGGTAGATTCGATATGTTG+AGG - tig0015447:11142-11161 Msa1356100:intron 35.0%
GACCAATCAATTAGAGAATG+AGG - tig0015447:11349-11368 Msa1356100:intron 35.0%
ACCCTCATTCTCTAATTGAT+TGG + tig0015447:11354-11373 None:intergenic 35.0%
GGTTGAGTAAAACAGAAAAC+AGG + tig0015447:11664-11683 None:intergenic 35.0%
! ATGTTGTTTAGTGACACGTT+GGG + tig0015447:11886-11905 None:intergenic 35.0%
ATATGATGAAGAGTGGGAAA+AGG - tig0015447:11978-11997 Msa1356100:intron 35.0%
TGCAGTTATGGTAAAATGCA+TGG + tig0015447:12110-12129 None:intergenic 35.0%
! TTTGAAGCTTTCAACCAGAT+TGG + tig0015447:12362-12381 None:intergenic 35.0%
GTTTAGCAAAGACCAATTCA+AGG - tig0015447:12430-12449 Msa1356100:intron 35.0%
ATGTACATGTAGCCAAATCA+GGG - tig0015447:12501-12520 Msa1356100:intron 35.0%
ATAATCCACTCTTATGCACA+TGG + tig0015447:12606-12625 None:intergenic 35.0%
TGGATTATTCATGACTCATG+AGG - tig0015447:12618-12637 Msa1356100:intron 35.0%
GGATTATTCATGACTCATGA+GGG - tig0015447:12619-12638 Msa1356100:intron 35.0%
TCAAAAATCAATCTCTGGTG+TGG - tig0015447:12853-12872 Msa1356100:intron 35.0%
TTGCAGCCATGACTATTATA+AGG - tig0015447:12878-12897 Msa1356100:intron 35.0%
!! CAGGGATAAAAGTGTCATAA+GGG + tig0015447:12922-12941 None:intergenic 35.0%
AGTGTAGATTTGGATAACCT+TGG - tig0015447:12955-12974 Msa1356100:intron 35.0%
! TACAATGAATTTTGCAGGTG+TGG - tig0015447:12986-13005 Msa1356100:intron 35.0%
TGATTGCAACCAAGATAACA+AGG - tig0015447:13081-13100 Msa1356100:intron 35.0%
TACAGCTTACAACAACAACA+TGG + tig0015447:13439-13458 None:intergenic 35.0%
TCATGGTCTATCTATAAAGG+TGG - tig0015447:13519-13538 Msa1356100:exon 35.0%
AAATTGAGTCAATGCTGTCA+AGG - tig0015447:13595-13614 Msa1356100:five_prime_UTR 35.0%
AATTGAGTCAATGCTGTCAA+GGG - tig0015447:13596-13615 Msa1356100:five_prime_UTR 35.0%
AAGGGATACCTAATGTACAT+GGG - tig0015447:13614-13633 Msa1356100:five_prime_UTR 35.0%
CCATAATACCCATGTACATT+AGG + tig0015447:13625-13644 None:intergenic 35.0%
CCTAATGTACATGGGTATTA+TGG - tig0015447:13622-13641 Msa1356100:five_prime_UTR 35.0%
TTCGTCCAGAAATACACTTT+GGG + tig0015447:13748-13767 None:intergenic 35.0%
TTTCGTCCAGAAATACACTT+TGG + tig0015447:13749-13768 None:intergenic 35.0%
CGTTAATATGAGGGTGGAAT+TGG + tig0015447:10476-10495 None:intergenic 40.0%
TGTTGCGGTCGTTAATATGA+GGG + tig0015447:10485-10504 None:intergenic 40.0%
TTGTTGCGGTCGTTAATATG+AGG + tig0015447:10486-10505 None:intergenic 40.0%
!! GAATTGGACTCTCTGAGATA+TGG + tig0015447:10593-10612 None:intergenic 40.0%
AGATTAAGAGCCATTGGTGT+TGG + tig0015447:10631-10650 None:intergenic 40.0%
TCTTCATCGAAGCTATCACT+TGG - tig0015447:10697-10716 Msa1356100:three_prime_UTR 40.0%
GCTCTTGAGATTAACACTCT+TGG + tig0015447:10767-10786 None:intergenic 40.0%
ATCTCAAGAGCTTAAGCTTG+AGG - tig0015447:10776-10795 Msa1356100:three_prime_UTR 40.0%
AGATCAAGCTTGGAAACTAC+TGG - tig0015447:10820-10839 Msa1356100:exon 40.0%
! AGCTCTAGCTGTATGAAACA+AGG + tig0015447:11075-11094 None:intergenic 40.0%
ATACAGCTAGAGCTAGCTAT+AGG - tig0015447:11081-11100 Msa1356100:CDS 40.0%
TTTGTGTAAGAGAGTTTCGC+AGG - tig0015447:11193-11212 Msa1356100:intron 40.0%
TTGTGTAAGAGAGTTTCGCA+GGG - tig0015447:11194-11213 Msa1356100:intron 40.0%
AATTAGAGAATGAGGGTCGA+AGG - tig0015447:11357-11376 Msa1356100:intron 40.0%
GTCCATTGATCAGTACATCT+TGG - tig0015447:11716-11735 Msa1356100:intron 40.0%
! CACCAAGATGTACTGATCAA+TGG + tig0015447:11721-11740 None:intergenic 40.0%
! GATGTTGTTTAGTGACACGT+TGG + tig0015447:11887-11906 None:intergenic 40.0%
ACAGCTACTACTTGCAGTTA+TGG + tig0015447:12122-12141 None:intergenic 40.0%
! GAAGAGGTAATTCACTGGTT+TGG - tig0015447:12241-12260 Msa1356100:intron 40.0%
AGCATTCATGCTTTCCAATC+TGG - tig0015447:12345-12364 Msa1356100:intron 40.0%
CTGGTTGAAAGCTTCAAAGT+TGG - tig0015447:12364-12383 Msa1356100:intron 40.0%
!! AAAGCTTCAAAGTTGGCCTT+TGG - tig0015447:12371-12390 Msa1356100:intron 40.0%
GATGTACATGTAGCCAAATC+AGG - tig0015447:12500-12519 Msa1356100:intron 40.0%
TATACAAGCACACCCTGATT+TGG + tig0015447:12516-12535 None:intergenic 40.0%
TTTCTCCATGTGCATAAGAG+TGG - tig0015447:12598-12617 Msa1356100:intron 40.0%
TCAAACTCTGATGTACCACT+GGG - tig0015447:12783-12802 Msa1356100:intron 40.0%
!! GCAGGGATAAAAGTGTCATA+AGG + tig0015447:12923-12942 None:intergenic 40.0%
! TTTGGAGCTATCACTTTGCA+AGG + tig0015447:13013-13032 None:intergenic 40.0%
GCAACCAAGATAACAAGGTA+TGG - tig0015447:13086-13105 Msa1356100:intron 40.0%
TGGCCTGACATAGTGTTTAA+TGG - tig0015447:13159-13178 Msa1356100:intron 40.0%
! CACCTTAATTCCTAGCTCTT+TGG + tig0015447:13202-13221 None:intergenic 40.0%
CAAAGAGCTAGGAATTAAGG+TGG - tig0015447:13200-13219 Msa1356100:CDS 40.0%
! GCAACTTTTCCCTATGCATA+GGG + tig0015447:13472-13491 None:intergenic 40.0%
! AGCAACTTTTCCCTATGCAT+AGG + tig0015447:13473-13492 None:intergenic 40.0%
CAAGGGATACCTAATGTACA+TGG - tig0015447:13613-13632 Msa1356100:five_prime_UTR 40.0%
GCTAGACGTCATTAAGTGTA+TGG + tig0015447:13662-13681 None:intergenic 40.0%
CACTTAATGACGTCTAGCAA+CGG - tig0015447:13664-13683 Msa1356100:five_prime_UTR 40.0%
! TCCAGAAATACACTTTGGGA+TGG + tig0015447:13744-13763 None:intergenic 40.0%
TTGCCCTTGGAGTTTGTGTA+TGG + tig0015447:10511-10530 None:intergenic 45.0%
ATGTGAAGAGGAGGAAGAGT+GGG + tig0015447:10556-10575 None:intergenic 45.0%
GCATGTGGAGAGTGAAGAAT+TGG + tig0015447:10609-10628 None:intergenic 45.0%
GTGCAGAGATTAAGAGCCAT+TGG + tig0015447:10637-10656 None:intergenic 45.0%
!! AGAAGTACTATCGAAGACGG+TGG + tig0015447:10680-10699 None:intergenic 45.0%
AGCTTAAGCTTGAGGAAGAG+TGG - tig0015447:10784-10803 Msa1356100:three_prime_UTR 45.0%
GCTTAAGCTTGAGGAAGAGT+GGG - tig0015447:10785-10804 Msa1356100:three_prime_UTR 45.0%
! AGTAACTTGTCCAACCGTCA+CGG + tig0015447:10851-10870 None:intergenic 45.0%
ATGATTAACGTCGCCACGTT+AGG - tig0015447:11245-11264 Msa1356100:intron 45.0%
CCATGAACTTCTACCTAACG+TGG + tig0015447:11261-11280 None:intergenic 45.0%
CCACGTTAGGTAGAAGTTCA+TGG - tig0015447:11258-11277 Msa1356100:intron 45.0%
!! AGGGTCGAAGGTATCCAAAA+TGG - tig0015447:11369-11388 Msa1356100:intron 45.0%
GTAAGTAGTAACGCTGTGCA+TGG + tig0015447:11685-11704 None:intergenic 45.0%
TTGTTTAGTGACACGTTGGG+AGG + tig0015447:11883-11902 None:intergenic 45.0%
TCATGACTCATGAGGGTTGT+TGG - tig0015447:12626-12645 Msa1356100:intron 45.0%
CATGACTCATGAGGGTTGTT+GGG - tig0015447:12627-12646 Msa1356100:intron 45.0%
CAGCTGGCTGATCACTATTT+AGG + tig0015447:12664-12683 None:intergenic 45.0%
CTCAAACTCTGATGTACCAC+TGG - tig0015447:12782-12801 Msa1356100:intron 45.0%
CAAACTCTGATGTACCACTG+GGG - tig0015447:12784-12803 Msa1356100:intron 45.0%
TATGGTTGCCCATGCTTTCT+TGG - tig0015447:13139-13158 Msa1356100:intron 45.0%
! ATGTCAGGCCAAGAAAGCAT+GGG + tig0015447:13150-13169 None:intergenic 45.0%
TATGTCAGGCCAAGAAAGCA+TGG + tig0015447:13151-13170 None:intergenic 45.0%
TAATGGTTATTGGCAGCCCT+TGG - tig0015447:13176-13195 Msa1356100:intron 45.0%
! ATTCCTAGCTCTTTGGCCAA+GGG + tig0015447:13195-13214 None:intergenic 45.0%
! AATTCCTAGCTCTTTGGCCA+AGG + tig0015447:13196-13215 None:intergenic 45.0%
GGCCAAAGAGCTAGGAATTA+AGG - tig0015447:13197-13216 Msa1356100:CDS 45.0%
GCTAGAACGAACTGTGTCAA+TGG + tig0015447:13304-13323 None:intergenic 45.0%
TGCAATTGTAAGCTGCTGAG+TGG - tig0015447:13396-13415 Msa1356100:CDS 45.0%
GCCATCCCAAAGTGTATTTC+TGG - tig0015447:13740-13759 Msa1356100:five_prime_UTR 45.0%
TGCGGTCGTTAATATGAGGG+TGG + tig0015447:10482-10501 None:intergenic 50.0%
!! TGAAATGACGGTGTTGCCCT+TGG + tig0015447:10524-10543 None:intergenic 50.0%
GATGTGAAGAGGAGGAAGAG+TGG + tig0015447:10557-10576 None:intergenic 50.0%
! TCTGAGATATGGTCGTGTGG+TGG + tig0015447:10582-10601 None:intergenic 50.0%
!! CTCTCTGAGATATGGTCGTG+TGG + tig0015447:10585-10604 None:intergenic 50.0%
TCTCCACATGCCAACACCAA+TGG - tig0015447:10618-10637 Msa1356100:three_prime_UTR 50.0%
ATCTCTGCACCTCCCCTAAA+TGG - tig0015447:10647-10666 Msa1356100:three_prime_UTR 50.0%
TGCACCTCCCCTAAATGGAT+TGG - tig0015447:10652-10671 Msa1356100:three_prime_UTR 50.0%
! GGTGGTGCCAATCCATTTAG+GGG + tig0015447:10662-10681 None:intergenic 50.0%
! CGGTGGTGCCAATCCATTTA+GGG + tig0015447:10663-10682 None:intergenic 50.0%
! ACGGTGGTGCCAATCCATTT+AGG + tig0015447:10664-10683 None:intergenic 50.0%
!! GAGGACGACGGTTTTATCAC+CGG + tig0015447:10914-10933 None:intergenic 50.0%
TCCTCGACATGTACACCCAA+TGG - tig0015447:10929-10948 Msa1356100:CDS 50.0%
ACCATTGGGTGTACATGTCG+AGG + tig0015447:10933-10952 None:intergenic 50.0%
GAAAACGGGGAGATAGAGAG+AGG + tig0015447:11811-11830 None:intergenic 50.0%
GCAAAGACCAATTCAAGGCG+TGG - tig0015447:12435-12454 Msa1356100:intron 50.0%
CTGATGACCACGCCTTGAAT+TGG + tig0015447:12445-12464 None:intergenic 50.0%
AAGCTGCTGAGTGGAAGATG+AGG - tig0015447:13405-13424 Msa1356100:CDS 50.0%
TCTCGCACCCAAGATCATTC+CGG - tig0015447:13695-13714 Msa1356100:five_prime_UTR 50.0%
TGTCCAGCCGGAATGATCTT+GGG + tig0015447:13705-13724 None:intergenic 50.0%
TTGTCCAGCCGGAATGATCT+TGG + tig0015447:13706-13725 None:intergenic 50.0%
ATTCCGGCTGGACAAAACAC+AGG - tig0015447:13711-13730 Msa1356100:five_prime_UTR 50.0%
! ACACCTGTGTTTTGTCCAGC+CGG + tig0015447:13717-13736 None:intergenic 50.0%
!! TGGTGGTGGATGTGAAGAGG+AGG + tig0015447:10565-10584 None:intergenic 55.0%
!! GTGTGGTGGTGGATGTGAAG+AGG + tig0015447:10568-10587 None:intergenic 55.0%
GAGATATGGTCGTGTGGTGG+TGG + tig0015447:10579-10598 None:intergenic 55.0%
!! GAGCCATTGGTGTTGGCATG+TGG + tig0015447:10624-10643 None:intergenic 55.0%
GGTGCCAATCCATTTAGGGG+AGG + tig0015447:10659-10678 None:intergenic 55.0%
ACTTGTCCAACCGTCACGGT+GGG + tig0015447:10847-10866 None:intergenic 55.0%
AACTTGTCCAACCGTCACGG+TGG + tig0015447:10848-10867 None:intergenic 55.0%
TCACCGGCGGCATTAACGAT+GGG + tig0015447:10898-10917 None:intergenic 55.0%
ATCACCGGCGGCATTAACGA+TGG + tig0015447:10899-10918 None:intergenic 55.0%
!! GACGACGGTTTTATCACCGG+CGG + tig0015447:10911-10930 None:intergenic 55.0%
GGTGTACATGTCGAGGACGA+CGG + tig0015447:10926-10945 None:intergenic 55.0%
AACTACTGGCCCCACCGTGA+CGG - tig0015447:10834-10853 Msa1356100:CDS 60.0%
CTTGTCCAACCGTCACGGTG+GGG + tig0015447:10846-10865 None:intergenic 60.0%
TGGCCCATCGTTAATGCCGC+CGG - tig0015447:10892-10911 Msa1356100:CDS 60.0%
CAAGGCGTGGTCATCAGCTG+AGG - tig0015447:12448-12467 Msa1356100:intron 60.0%
CTACTAGCGCTAGACCCCAG+TGG + tig0015447:12801-12820 None:intergenic 60.0%
CAGCCCTTGGCCAAAGAGCT+AGG - tig0015447:13189-13208 Msa1356100:intron 60.0%
GCACCCAAGATCATTCCGGC+TGG - tig0015447:13699-13718 Msa1356100:five_prime_UTR 60.0%
ACTGGCCCCACCGTGACGGT+TGG - tig0015447:10838-10857 Msa1356100:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0015447 gene 10358 13789 10358 ID=Msa1356100;Name=Msa1356100
tig0015447 mRNA 10358 13789 10358 ID=Msa1356100-mRNA-1;Parent=Msa1356100;Name=Msa1356100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=267|1|1|1|1|1|3|463|186
tig0015447 exon 10358 10955 10358 ID=Msa1356100-mRNA-1:exon:9741;Parent=Msa1356100-mRNA-1
tig0015447 exon 11045 11144 11045 ID=Msa1356100-mRNA-1:exon:9740;Parent=Msa1356100-mRNA-1
tig0015447 exon 13197 13789 13197 ID=Msa1356100-mRNA-1:exon:9739;Parent=Msa1356100-mRNA-1
tig0015447 five_prime_UTR 13523 13789 13523 ID=Msa1356100-mRNA-1:five_prime_utr;Parent=Msa1356100-mRNA-1
tig0015447 CDS 13197 13522 13197 ID=Msa1356100-mRNA-1:cds;Parent=Msa1356100-mRNA-1
tig0015447 CDS 11045 11144 11045 ID=Msa1356100-mRNA-1:cds;Parent=Msa1356100-mRNA-1
tig0015447 CDS 10821 10955 10821 ID=Msa1356100-mRNA-1:cds;Parent=Msa1356100-mRNA-1
tig0015447 three_prime_UTR 10358 10820 10358 ID=Msa1356100-mRNA-1:three_prime_utr;Parent=Msa1356100-mRNA-1
Gene Sequence

>Msa1356100

ATGCCAACACCAATGGCTCTTAATCTCTGCACCTCCCCTAAATGGATTGGCACCACCGTCTTCGATAGTACTTCTTCATCGAAGCTATCACTTGGTTCTTCTTCTTCTACTACTTCATTTTCTTCTTCCATTTTGAATTCCAAGAGTGTTAATCTCAAGAGCTTAAGCTTGAGGAAGAGTGGGAGTTTCTGTGTAAGATCAAGCTTGGAAACTACTGGCCCCACCGTGACGGTTGGACAAGTTACTGAAGTTAACAAGGATACGTTCTGGCCCATCGTTAATGCCGCCGGTGATAAAACCGTCGTCCTCGACATGTACACCCAATGGTGTGGTCCTTGCAAAGTGATAGCTCCAAAATACAAAGAATTAGCTGAGAAGTATTTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGATAACAAGCCCTTGGCCAAAGAGCTAGGAATTAAGGTGGTTCCCACTTTTAAAATTCTGAAAGACAACAAGGTTGTAAAAGAAGTAACTGGAGCTAAATATGATGATTTGGTCTTTGCCATTGACACAGTTCGTTCTAGCTAA

Protein sequence

>Msa1356100

MPTPMALNLCTSPKWIGTTVFDSTSSSKLSLGSSSSTTSFSSSILNSKSVNLKSLSLRKSGSFCVRSSLETTGPTVTVGQVTEVNKDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKYKELAEKYLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDNKVVKEVTGAKYDDLVFAIDTVRSS*