Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131430 | XP_024636960.1 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 8.50e-47 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131430 | sp|O82232|RC22_ARATH | 79.167 | 72 | 15 | 0 | 1 | 72 | 1 | 72 | 6.74e-37 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131430 | I3S6D4 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 4.06e-47 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033430 | Msa1131430 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
| Msa0052780 | Msa1131430 | 0.850110 | 2.098448e-60 | -8.615850e-47 |
| Msa0061220 | Msa1131430 | 0.808221 | 3.444431e-50 | -8.615850e-47 |
| Msa0074690 | Msa1131430 | 0.812103 | 5.017228e-51 | -8.615850e-47 |
| Msa0077370 | Msa1131430 | 0.837802 | 4.191732e-57 | -8.615850e-47 |
| Msa0077430 | Msa1131430 | 0.805022 | 1.631611e-49 | -8.615850e-47 |
| Msa0095940 | Msa1131430 | 0.804558 | 2.039265e-49 | -8.615850e-47 |
| Msa0097570 | Msa1131430 | 0.852680 | 3.938241e-61 | -8.615850e-47 |
| Msa0603690 | Msa1131430 | -0.807586 | 4.700911e-50 | -8.615850e-47 |
| Msa0611060 | Msa1131430 | 0.835270 | 1.850206e-56 | -8.615850e-47 |
| Msa0618550 | Msa1131430 | 0.827851 | 1.244798e-54 | -8.615850e-47 |
| Msa0631130 | Msa1131430 | 0.850678 | 1.453881e-60 | -8.615850e-47 |
| Msa0657340 | Msa1131430 | 0.826292 | 2.939040e-54 | -8.615850e-47 |
| Msa0669350 | Msa1131430 | 0.844936 | 5.551261e-59 | -8.615850e-47 |
| Msa0701430 | Msa1131430 | 0.818996 | 1.464587e-52 | -8.615850e-47 |
| Msa0707920 | Msa1131430 | 0.801545 | 8.558650e-49 | -8.615850e-47 |
| Msa0713060 | Msa1131430 | 0.825576 | 4.347193e-54 | -8.615850e-47 |
| Msa0744640 | Msa1131430 | 0.873129 | 1.867273e-67 | -8.615850e-47 |
| Msa0795320 | Msa1131430 | 0.800158 | 1.643037e-48 | -8.615850e-47 |
| Msa0816630 | Msa1131430 | 0.846735 | 1.801741e-59 | -8.615850e-47 |
| Msa0829990 | Msa1131430 | 0.809687 | 1.672734e-50 | -8.615850e-47 |
| Msa0833270 | Msa1131430 | 0.808125 | 3.612216e-50 | -8.615850e-47 |
| Msa0841730 | Msa1131430 | 0.872904 | 2.221289e-67 | -8.615850e-47 |
| Msa0129640 | Msa1131430 | 0.805316 | 1.416046e-49 | -8.615850e-47 |
| Msa0145430 | Msa1131430 | 0.838098 | 3.518883e-57 | -8.615850e-47 |
| Msa0158890 | Msa1131430 | -0.835541 | 1.579983e-56 | -8.615850e-47 |
| Msa0203090 | Msa1131430 | 0.801833 | 7.469881e-49 | -8.615850e-47 |
| Msa0402800 | Msa1131430 | 0.807439 | 5.052506e-50 | -8.615850e-47 |
| Msa0443450 | Msa1131430 | 0.809870 | 1.527762e-50 | -8.615850e-47 |
| Msa1001120 | Msa1131430 | 0.806147 | 9.473449e-50 | -8.615850e-47 |
| Msa1034450 | Msa1131430 | 0.820151 | 7.979011e-53 | -8.615850e-47 |
| Msa1062080 | Msa1131430 | 0.805249 | 1.462601e-49 | -8.615850e-47 |
| Msa1069340 | Msa1131430 | 0.827051 | 1.936269e-54 | -8.615850e-47 |
| Msa1074200 | Msa1131430 | 0.819221 | 1.301367e-52 | -8.615850e-47 |
| Msa1080610 | Msa1131430 | -0.802303 | 5.980910e-49 | -8.615850e-47 |
| Msa1080680 | Msa1131430 | -0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa1080820 | Msa1131430 | 0.803431 | 3.498282e-49 | -8.615850e-47 |
| Msa0246140 | Msa1131430 | 0.810917 | 9.080270e-51 | -8.615850e-47 |
| Msa0264680 | Msa1131430 | 0.801400 | 9.168770e-49 | -8.615850e-47 |
| Msa0275250 | Msa1131430 | -0.819406 | 1.181011e-52 | -8.615850e-47 |
| Msa0285890 | Msa1131430 | 0.802988 | 4.320134e-49 | -8.615850e-47 |
| Msa0306310 | Msa1131430 | 0.811114 | 8.231461e-51 | -8.615850e-47 |
| Msa0319680 | Msa1131430 | 0.804264 | 2.347913e-49 | -8.615850e-47 |
| Msa0324810 | Msa1131430 | 0.809391 | 1.936689e-50 | -8.615850e-47 |
| Msa0345050 | Msa1131430 | 0.803751 | 3.001328e-49 | -8.615850e-47 |
| Msa0345890 | Msa1131430 | 0.834801 | 2.429313e-56 | -8.615850e-47 |
| Msa1107220 | Msa1131430 | 0.814666 | 1.371932e-51 | -8.615850e-47 |
| Msa1113100 | Msa1131430 | 0.805635 | 1.213572e-49 | -8.615850e-47 |
| Msa1114670 | Msa1131430 | 0.825468 | 4.611078e-54 | -8.615850e-47 |
| Msa1118960 | Msa1131430 | 0.802778 | 4.773472e-49 | -8.615850e-47 |
| Msa1120580 | Msa1131430 | 0.811287 | 7.548123e-51 | -8.615850e-47 |
| Msa1131430 | Msa1133700 | 0.820552 | 6.459024e-53 | -8.615850e-47 |
| Msa1131430 | Msa1157110 | 0.839292 | 1.729237e-57 | -8.615850e-47 |
| Msa1131430 | Msa1159170 | 0.826957 | 2.039175e-54 | -8.615850e-47 |
| Msa1131430 | Msa1167150 | -0.804369 | 2.233362e-49 | -8.615850e-47 |
| Msa1131430 | Msa1173150 | 0.852820 | 3.592686e-61 | -8.615850e-47 |
| Msa1131430 | Msa1187490 | 0.807916 | 4.001175e-50 | -8.615850e-47 |
| Msa1131430 | Msa1202110 | 0.837256 | 5.788067e-57 | -8.615850e-47 |
| Msa1131430 | Msa1202800 | 0.801046 | 1.082838e-48 | -8.615850e-47 |
| Msa1131430 | Msa1217260 | 0.828588 | 8.270405e-55 | -8.615850e-47 |
| Msa1131430 | Msa1218160 | 0.829023 | 6.492378e-55 | -8.615850e-47 |
| Msa1131430 | Msa1221220 | 0.839851 | 1.237077e-57 | -8.615850e-47 |
| Msa1131430 | Msa1225580 | 0.801815 | 7.535767e-49 | -8.615850e-47 |
| Msa1131430 | Msa1252000 | 0.800626 | 1.319594e-48 | -8.615850e-47 |
| Msa1131430 | Msa1252810 | 0.822815 | 1.935252e-53 | -8.615850e-47 |
| Msa1131430 | Msa1254870 | 0.834438 | 2.997601e-56 | -8.615850e-47 |
| Msa1131430 | Msa1255210 | 0.804528 | 2.068923e-49 | -8.615850e-47 |
| Msa1131430 | Msa1262540 | 0.836748 | 7.803793e-57 | -8.615850e-47 |
| Msa1131430 | Msa1306830 | 0.812389 | 4.345800e-51 | -8.615850e-47 |
| Msa1131430 | Msa1328430 | 0.834812 | 2.413450e-56 | -8.615850e-47 |
| Msa1131430 | Msa1357570 | 0.802829 | 4.659454e-49 | -8.615850e-47 |
| Msa1131430 | Msa1367790 | 0.820313 | 7.325994e-53 | -8.615850e-47 |
| Msa1131430 | Msa1404050 | 0.810352 | 1.202813e-50 | -8.615850e-47 |
| Msa1131430 | Msa1405530 | 0.811144 | 8.109413e-51 | -8.615850e-47 |
| Msa1131430 | Msa1412410 | 0.811773 | 5.921030e-51 | -8.615850e-47 |
| Msa1131430 | Msa1443400 | 0.800256 | 1.569582e-48 | -8.615850e-47 |
| Msa1131430 | Msa1448040 | 0.802278 | 6.052987e-49 | -8.615850e-47 |
| Msa1131430 | Msa1450970 | 0.868180 | 7.906345e-66 | -8.615850e-47 |
| Msa1131430 | Msa1465860 | 0.815683 | 8.154122e-52 | -8.615850e-47 |
| Msa0483000 | Msa1131430 | 0.823880 | 1.091415e-53 | -8.615850e-47 |
| Msa0488580 | Msa1131430 | 0.807088 | 5.994654e-50 | -8.615850e-47 |
| Msa0490320 | Msa1131430 | 0.827959 | 1.172901e-54 | -8.615850e-47 |
| Msa0497860 | Msa1131430 | 0.805666 | 1.195513e-49 | -8.615850e-47 |
| Msa0529000 | Msa1131430 | 0.836926 | 7.025039e-57 | -8.615850e-47 |
| Msa0530730 | Msa1131430 | 0.802720 | 4.906481e-49 | -8.615850e-47 |
| Msa0534610 | Msa1131430 | 0.854534 | 1.154649e-61 | -8.615850e-47 |
| Msa0545930 | Msa1131430 | -0.801132 | 1.040212e-48 | -8.615850e-47 |
| Msa0565180 | Msa1131430 | 0.816625 | 5.022210e-52 | -8.615850e-47 |
| Msa0574930 | Msa1131430 | 0.814998 | 1.157619e-51 | -8.615850e-47 |
| Msa0576560 | Msa1131430 | 0.811294 | 7.522294e-51 | -8.615850e-47 |
| Msa0577490 | Msa1131430 | 0.840924 | 6.484716e-58 | -8.615850e-47 |
| Msa0584580 | Msa1131430 | 0.816019 | 6.862147e-52 | -8.615850e-47 |
| Msa0584600 | Msa1131430 | 0.810120 | 1.350088e-50 | -8.615850e-47 |
| Msa0590810 | Msa1131430 | 0.849970 | 2.297507e-60 | -8.615850e-47 |
| Msa0863940 | Msa1131430 | 0.829191 | 5.909744e-55 | -8.615850e-47 |
| Msa0863990 | Msa1131430 | 0.804559 | 2.038503e-49 | -8.615850e-47 |
| Msa0870510 | Msa1131430 | 0.813426 | 2.574545e-51 | -8.615850e-47 |
| Msa0905570 | Msa1131430 | 0.827651 | 1.391006e-54 | -8.615850e-47 |
| Msa0930740 | Msa1131430 | 0.809478 | 1.854970e-50 | -8.615850e-47 |
| Msa0969720 | Msa1131430 | 0.803513 | 3.363796e-49 | -8.615850e-47 |
| Msa0975960 | Msa1131430 | 0.803040 | 4.214000e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131430 | MtrunA17_Chr4g0073821 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 7.81e-51 | 153 |
| Msa1131430 | MtrunA17_Chr4g0073811 | 81.333 | 75 | 14 | 0 | 1 | 75 | 1 | 75 | 1.22e-40 | 127 |
| Msa1131430 | MtrunA17_Chr7g0271271 | 70.833 | 48 | 13 | 1 | 8 | 55 | 6 | 52 | 2.43e-16 | 65.9 |
| Msa1131430 | MtrunA17_Chr7g0271281 | 62.500 | 48 | 17 | 1 | 8 | 55 | 6 | 52 | 2.29e-14 | 60.8 |
| Msa1131430 | MtrunA17_Chr6g0462381 | 55.769 | 52 | 22 | 1 | 5 | 56 | 3 | 53 | 1.91e-13 | 58.5 |
| Msa1131430 | MtrunA17_Chr7g0271261 | 61.702 | 47 | 17 | 1 | 9 | 55 | 7 | 52 | 1.58e-12 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131430 | AT4G28088.1 | 80.263 | 76 | 14 | 1 | 1 | 75 | 1 | 76 | 8.21e-41 | 128 |
| Msa1131430 | AT2G24040.1 | 79.167 | 72 | 15 | 0 | 1 | 72 | 1 | 72 | 6.85e-38 | 121 |
| Msa1131430 | AT4G30660.1 | 75.342 | 73 | 18 | 0 | 1 | 73 | 1 | 73 | 4.70e-37 | 119 |
| Msa1131430 | AT4G30660.2 | 75.342 | 73 | 18 | 0 | 1 | 73 | 1 | 73 | 4.70e-37 | 119 |
| Msa1131430 | AT4G30650.1 | 63.514 | 74 | 26 | 1 | 1 | 74 | 1 | 73 | 2.63e-27 | 94.4 |
| Msa1131430 | AT2G38905.1 | 66.667 | 51 | 16 | 1 | 6 | 56 | 4 | 53 | 1.36e-15 | 64.3 |
| Msa1131430 | AT3G05880.1 | 69.565 | 46 | 13 | 1 | 10 | 55 | 8 | 52 | 1.71e-14 | 61.6 |
| Msa1131430 | AT3G05890.1 | 67.391 | 46 | 14 | 1 | 10 | 55 | 8 | 52 | 2.92e-14 | 60.8 |
| Msa1131430 | AT2G24040.2 | 75.000 | 32 | 8 | 0 | 1 | 32 | 1 | 32 | 4.71e-13 | 57.8 |
Find 30 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGTGTTGCTCCCTCCTT+TGG | 0.237778 | 7_3:-83971698 | Msa1131430:CDS |
| AGATTTGAGTTAGGTCAATT+TGG | 0.259030 | 7_3:-83971196 | Msa1131430:three_prime_UTR |
| GATCATCACTTGTTCTTGTT+TGG | 0.268370 | 7_3:-83971795 | Msa1131430:five_prime_UTR |
| AATTCATGTAGAAAATTATA+TGG | 0.289444 | 7_3:-83971102 | Msa1131430:three_prime_UTR |
| TGATGTGATTGTTGATTGTT+TGG | 0.361552 | 7_3:-83971079 | Msa1131430:three_prime_UTR |
| ATTGTGGTTTACTCGAAAAC+TGG | 0.367118 | 7_3:-83971150 | Msa1131430:three_prime_UTR |
| ATCACGATCAATAAAGATAA+TGG | 0.374759 | 7_3:+83971353 | None:intergenic |
| GTGATGATCATCTAAAGTTT+AGG | 0.388258 | 7_3:+83971809 | None:intergenic |
| TGCTTGCTCCTTACAATACT+AGG | 0.414159 | 7_3:-83971408 | Msa1131430:CDS |
| CTTGTTCTTGTTTGGATCGC+GGG | 0.438467 | 7_3:-83971787 | Msa1131430:five_prime_UTR |
| TTCTCTTTGAGATTTGAGTT+AGG | 0.454642 | 7_3:-83971205 | Msa1131430:three_prime_UTR |
| TAAAGTGGTTAGTTATATTG+TGG | 0.465212 | 7_3:-83971014 | Msa1131430:three_prime_UTR |
| ACAATACTAGGATATCTTCC+TGG | 0.469622 | 7_3:-83971396 | Msa1131430:CDS |
| GCTGTGTTGCTCCCTCCTTT+GGG | 0.470326 | 7_3:-83971697 | Msa1131430:CDS |
| TTGAGTTAGGTCAATTTGGA+TGG | 0.478573 | 7_3:-83971192 | Msa1131430:three_prime_UTR |
| ATCAGTACTTTGATGAATAT+AGG | 0.494017 | 7_3:-83971332 | Msa1131430:CDS |
| ATCAAATTATGAAAATAAAG+TGG | 0.499775 | 7_3:-83971029 | Msa1131430:three_prime_UTR |
| GAAGATATCCTAGTATTGTA+AGG | 0.501846 | 7_3:+83971400 | None:intergenic |
| TTGCATTATTCGTTTCATTG+TGG | 0.556335 | 7_3:-83971166 | Msa1131430:three_prime_UTR |
| TTGGGTGTTTGTCTCCGCCA+TGG | 0.565764 | 7_3:-83971679 | Msa1131430:CDS |
| ACTTGTTCTTGTTTGGATCG+CGG | 0.583202 | 7_3:-83971788 | Msa1131430:five_prime_UTR |
| CAAGAATAATAAAATTCAAG+TGG | 0.594545 | 7_3:+83971238 | None:intergenic |
| GGAGACAAACACCCAAAGGA+GGG | 0.610468 | 7_3:+83971686 | None:intergenic |
| CGGAGACAAACACCCAAAGG+AGG | 0.614116 | 7_3:+83971685 | None:intergenic |
| TGGCGGAGACAAACACCCAA+AGG | 0.638625 | 7_3:+83971682 | None:intergenic |
| TAGAGAGCATAAATTATACC+AGG | 0.643088 | 7_3:+83971378 | None:intergenic |
| TATTGTGATTGTGCATACAA+AGG | 0.645143 | 7_3:+83971306 | None:intergenic |
| GACATACAGTGCAGCAACCA+TGG | 0.648406 | 7_3:+83971662 | None:intergenic |
| CAGCAAATTTCACAACGTGA+AGG | 0.664232 | 7_3:+83971733 | None:intergenic |
| ATACAGTGCAGCAACCATGG+CGG | 0.788306 | 7_3:+83971665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTCATTAAAATCA+TGG | + | chr7_3:83971400-83971419 | None:intergenic | 10.0% |
| !! | AAATAATTTCATTAAAATCA+TGG | + | chr7_3:83971400-83971419 | None:intergenic | 10.0% |
| !! | ACTAAAAAATCATGAAAAAT+TGG | + | chr7_3:83971293-83971312 | None:intergenic | 15.0% |
| !! | AATTCATGTAGAAAATTATA+TGG | - | chr7_3:83971753-83971772 | Msa1131430:exon | 15.0% |
| !! | ATCAAATTATGAAAATAAAG+TGG | - | chr7_3:83971826-83971845 | Msa1131430:five_prime_UTR | 15.0% |
| !! | ACTAAAAAATCATGAAAAAT+TGG | + | chr7_3:83971293-83971312 | None:intergenic | 15.0% |
| !! | AATTCATGTAGAAAATTATA+TGG | - | chr7_3:83971753-83971772 | Msa1131430:exon | 15.0% |
| !! | ATCAAATTATGAAAATAAAG+TGG | - | chr7_3:83971826-83971845 | Msa1131430:five_prime_UTR | 15.0% |
| !! | AAAGGAAAAAAGAAGTAAAA+GGG | + | chr7_3:83971256-83971275 | None:intergenic | 20.0% |
| !! | AAAAGGAAAAAAGAAGTAAA+AGG | + | chr7_3:83971257-83971276 | None:intergenic | 20.0% |
| !!! | AATCATGAAAAATTGGATTT+TGG | + | chr7_3:83971286-83971305 | None:intergenic | 20.0% |
| !!! | GAAATTATTTTAATTTGTGC+AGG | - | chr7_3:83971410-83971429 | Msa1131430:CDS | 20.0% |
| !! | CAAGAATAATAAAATTCAAG+TGG | + | chr7_3:83971620-83971639 | None:intergenic | 20.0% |
| !! | AAAGGAAAAAAGAAGTAAAA+GGG | + | chr7_3:83971256-83971275 | None:intergenic | 20.0% |
| !! | AAAAGGAAAAAAGAAGTAAA+AGG | + | chr7_3:83971257-83971276 | None:intergenic | 20.0% |
| !!! | AATCATGAAAAATTGGATTT+TGG | + | chr7_3:83971286-83971305 | None:intergenic | 20.0% |
| !!! | GAAATTATTTTAATTTGTGC+AGG | - | chr7_3:83971410-83971429 | Msa1131430:CDS | 20.0% |
| !! | CAAGAATAATAAAATTCAAG+TGG | + | chr7_3:83971620-83971639 | None:intergenic | 20.0% |
| ! | ATCACGATCAATAAAGATAA+TGG | + | chr7_3:83971505-83971524 | None:intergenic | 25.0% |
| ! | ATCAGTACTTTGATGAATAT+AGG | - | chr7_3:83971523-83971542 | Msa1131430:intron | 25.0% |
| !! | TAAAGTGGTTAGTTATATTG+TGG | - | chr7_3:83971841-83971860 | Msa1131430:five_prime_UTR | 25.0% |
| ! | ATCACGATCAATAAAGATAA+TGG | + | chr7_3:83971505-83971524 | None:intergenic | 25.0% |
| ! | ATCAGTACTTTGATGAATAT+AGG | - | chr7_3:83971523-83971542 | Msa1131430:intron | 25.0% |
| ! | GTGATGATCATCTAAAGTTT+AGG | + | chr7_3:83971049-83971068 | None:intergenic | 30.0% |
| ! | TTGGATTTTGGATGTGAAAA+AGG | + | chr7_3:83971274-83971293 | None:intergenic | 30.0% |
| GAAGATATCCTAGTATTGTA+AGG | + | chr7_3:83971458-83971477 | None:intergenic | 30.0% | |
| ! | TAGAGAGCATAAATTATACC+AGG | + | chr7_3:83971480-83971499 | None:intergenic | 30.0% |
| TATTGTGATTGTGCATACAA+AGG | + | chr7_3:83971552-83971571 | None:intergenic | 30.0% | |
| !! | TTCTCTTTGAGATTTGAGTT+AGG | - | chr7_3:83971650-83971669 | Msa1131430:intron | 30.0% |
| ! | AGATTTGAGTTAGGTCAATT+TGG | - | chr7_3:83971659-83971678 | Msa1131430:intron | 30.0% |
| TTGCATTATTCGTTTCATTG+TGG | - | chr7_3:83971689-83971708 | Msa1131430:CDS | 30.0% | |
| ! | TGATGTGATTGTTGATTGTT+TGG | - | chr7_3:83971776-83971795 | Msa1131430:five_prime_UTR | 30.0% |
| ! | GTGATGATCATCTAAAGTTT+AGG | + | chr7_3:83971049-83971068 | None:intergenic | 30.0% |
| ! | TTGGATTTTGGATGTGAAAA+AGG | + | chr7_3:83971274-83971293 | None:intergenic | 30.0% |
| GAAGATATCCTAGTATTGTA+AGG | + | chr7_3:83971458-83971477 | None:intergenic | 30.0% | |
| ! | TAGAGAGCATAAATTATACC+AGG | + | chr7_3:83971480-83971499 | None:intergenic | 30.0% |
| TATTGTGATTGTGCATACAA+AGG | + | chr7_3:83971552-83971571 | None:intergenic | 30.0% | |
| !! | TTCTCTTTGAGATTTGAGTT+AGG | - | chr7_3:83971650-83971669 | Msa1131430:intron | 30.0% |
| ! | AGATTTGAGTTAGGTCAATT+TGG | - | chr7_3:83971659-83971678 | Msa1131430:intron | 30.0% |
| TTGCATTATTCGTTTCATTG+TGG | - | chr7_3:83971689-83971708 | Msa1131430:CDS | 30.0% | |
| ! | TGATGTGATTGTTGATTGTT+TGG | - | chr7_3:83971776-83971795 | Msa1131430:five_prime_UTR | 30.0% |
| GATCATCACTTGTTCTTGTT+TGG | - | chr7_3:83971060-83971079 | Msa1131430:three_prime_UTR | 35.0% | |
| !!! | CATTTTTTCTGGCTTCTTGT+TGG | + | chr7_3:83971102-83971121 | None:intergenic | 35.0% |
| TTACAATCATTGTGAGTGAC+AGG | - | chr7_3:83971368-83971387 | Msa1131430:CDS | 35.0% | |
| ACAATACTAGGATATCTTCC+TGG | - | chr7_3:83971459-83971478 | Msa1131430:intron | 35.0% | |
| TTGAGTTAGGTCAATTTGGA+TGG | - | chr7_3:83971663-83971682 | Msa1131430:intron | 35.0% | |
| ATTGTGGTTTACTCGAAAAC+TGG | - | chr7_3:83971705-83971724 | Msa1131430:CDS | 35.0% | |
| GATCATCACTTGTTCTTGTT+TGG | - | chr7_3:83971060-83971079 | Msa1131430:three_prime_UTR | 35.0% | |
| !!! | CATTTTTTCTGGCTTCTTGT+TGG | + | chr7_3:83971102-83971121 | None:intergenic | 35.0% |
| TTACAATCATTGTGAGTGAC+AGG | - | chr7_3:83971368-83971387 | Msa1131430:CDS | 35.0% | |
| ACAATACTAGGATATCTTCC+TGG | - | chr7_3:83971459-83971478 | Msa1131430:intron | 35.0% | |
| TTGAGTTAGGTCAATTTGGA+TGG | - | chr7_3:83971663-83971682 | Msa1131430:intron | 35.0% | |
| ATTGTGGTTTACTCGAAAAC+TGG | - | chr7_3:83971705-83971724 | Msa1131430:CDS | 35.0% | |
| ! | ACTTGTTCTTGTTTGGATCG+CGG | - | chr7_3:83971067-83971086 | Msa1131430:three_prime_UTR | 40.0% |
| !!! | CAACGTGAAGGCATTTTTTC+TGG | + | chr7_3:83971113-83971132 | None:intergenic | 40.0% |
| CAGCAAATTTCACAACGTGA+AGG | + | chr7_3:83971125-83971144 | None:intergenic | 40.0% | |
| TGCTTGCTCCTTACAATACT+AGG | - | chr7_3:83971447-83971466 | Msa1131430:intron | 40.0% | |
| ! | ACTTGTTCTTGTTTGGATCG+CGG | - | chr7_3:83971067-83971086 | Msa1131430:three_prime_UTR | 40.0% |
| !!! | CAACGTGAAGGCATTTTTTC+TGG | + | chr7_3:83971113-83971132 | None:intergenic | 40.0% |
| CAGCAAATTTCACAACGTGA+AGG | + | chr7_3:83971125-83971144 | None:intergenic | 40.0% | |
| TGCTTGCTCCTTACAATACT+AGG | - | chr7_3:83971447-83971466 | Msa1131430:intron | 40.0% | |
| ! | CTTGTTCTTGTTTGGATCGC+GGG | - | chr7_3:83971068-83971087 | Msa1131430:three_prime_UTR | 45.0% |
| TCTCTCTCCATCACTTCCAT+GGG | - | chr7_3:83971224-83971243 | Msa1131430:three_prime_UTR | 45.0% | |
| AGTAAAAGGGTAGATCCCCA+TGG | + | chr7_3:83971243-83971262 | None:intergenic | 45.0% | |
| ! | CTTGTTCTTGTTTGGATCGC+GGG | - | chr7_3:83971068-83971087 | Msa1131430:three_prime_UTR | 45.0% |
| TCTCTCTCCATCACTTCCAT+GGG | - | chr7_3:83971224-83971243 | Msa1131430:three_prime_UTR | 45.0% | |
| AGTAAAAGGGTAGATCCCCA+TGG | + | chr7_3:83971243-83971262 | None:intergenic | 45.0% | |
| GGAGACAAACACCCAAAGGA+GGG | + | chr7_3:83971172-83971191 | None:intergenic | 50.0% | |
| ATACAGTGCAGCAACCATGG+CGG | + | chr7_3:83971193-83971212 | None:intergenic | 50.0% | |
| GACATACAGTGCAGCAACCA+TGG | + | chr7_3:83971196-83971215 | None:intergenic | 50.0% | |
| CTCTCTCTCCATCACTTCCA+TGG | - | chr7_3:83971223-83971242 | Msa1131430:three_prime_UTR | 50.0% | |
| CTCTCTCCATCACTTCCATG+GGG | - | chr7_3:83971225-83971244 | Msa1131430:three_prime_UTR | 50.0% | |
| GTAGATCCCCATGGAAGTGA+TGG | + | chr7_3:83971234-83971253 | None:intergenic | 50.0% | |
| GGAGACAAACACCCAAAGGA+GGG | + | chr7_3:83971172-83971191 | None:intergenic | 50.0% | |
| ATACAGTGCAGCAACCATGG+CGG | + | chr7_3:83971193-83971212 | None:intergenic | 50.0% | |
| GACATACAGTGCAGCAACCA+TGG | + | chr7_3:83971196-83971215 | None:intergenic | 50.0% | |
| CTCTCTCTCCATCACTTCCA+TGG | - | chr7_3:83971223-83971242 | Msa1131430:three_prime_UTR | 50.0% | |
| CTCTCTCCATCACTTCCATG+GGG | - | chr7_3:83971225-83971244 | Msa1131430:three_prime_UTR | 50.0% | |
| GTAGATCCCCATGGAAGTGA+TGG | + | chr7_3:83971234-83971253 | None:intergenic | 50.0% | |
| ! | GCTGTGTTGCTCCCTCCTTT+GGG | - | chr7_3:83971158-83971177 | Msa1131430:three_prime_UTR | 55.0% |
| CGGAGACAAACACCCAAAGG+AGG | + | chr7_3:83971173-83971192 | None:intergenic | 55.0% | |
| TGGCGGAGACAAACACCCAA+AGG | + | chr7_3:83971176-83971195 | None:intergenic | 55.0% | |
| TTGGGTGTTTGTCTCCGCCA+TGG | - | chr7_3:83971176-83971195 | Msa1131430:three_prime_UTR | 55.0% | |
| ! | GCTGTGTTGCTCCCTCCTTT+GGG | - | chr7_3:83971158-83971177 | Msa1131430:three_prime_UTR | 55.0% |
| CGGAGACAAACACCCAAAGG+AGG | + | chr7_3:83971173-83971192 | None:intergenic | 55.0% | |
| TGGCGGAGACAAACACCCAA+AGG | + | chr7_3:83971176-83971195 | None:intergenic | 55.0% | |
| TTGGGTGTTTGTCTCCGCCA+TGG | - | chr7_3:83971176-83971195 | Msa1131430:three_prime_UTR | 55.0% | |
| ! | CGCTGTGTTGCTCCCTCCTT+TGG | - | chr7_3:83971157-83971176 | Msa1131430:three_prime_UTR | 60.0% |
| ! | CGCTGTGTTGCTCCCTCCTT+TGG | - | chr7_3:83971157-83971176 | Msa1131430:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 83971014 | 83971863 | 83971014 | ID=Msa1131430;Name=Msa1131430 |
| chr7_3 | mRNA | 83971014 | 83971863 | 83971014 | ID=Msa1131430-mRNA-1;Parent=Msa1131430;Name=Msa1131430-mRNA-1;_AED=0.30;_eAED=0.30;_QI=105|1|1|1|1|1|2|288|77 |
| chr7_3 | exon | 83971014 | 83971445 | 83971014 | ID=Msa1131430-mRNA-1:exon:24973;Parent=Msa1131430-mRNA-1 |
| chr7_3 | exon | 83971669 | 83971863 | 83971669 | ID=Msa1131430-mRNA-1:exon:24972;Parent=Msa1131430-mRNA-1 |
| chr7_3 | five_prime_UTR | 83971759 | 83971863 | 83971759 | ID=Msa1131430-mRNA-1:five_prime_utr;Parent=Msa1131430-mRNA-1 |
| chr7_3 | CDS | 83971669 | 83971758 | 83971669 | ID=Msa1131430-mRNA-1:cds;Parent=Msa1131430-mRNA-1 |
| chr7_3 | CDS | 83971302 | 83971445 | 83971302 | ID=Msa1131430-mRNA-1:cds;Parent=Msa1131430-mRNA-1 |
| chr7_3 | three_prime_UTR | 83971014 | 83971301 | 83971014 | ID=Msa1131430-mRNA-1:three_prime_utr;Parent=Msa1131430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
