AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077600 MtrunA17_Chr1g0187801 98.673 603 8 0 1 603 1 603 0.0 1234
Msa0077600 MtrunA17_Chr1g0167721 76.910 602 132 6 4 601 2 600 0.0 936
Msa0077600 MtrunA17_Chr5g0426121 55.719 612 244 7 2 596 5 606 0.0 696
Msa0077600 MtrunA17_Chr4g0003821 28.731 536 334 19 1 510 11 524 1.49e-51 186
Msa0077600 MtrunA17_Chr3g0138841 28.163 490 278 18 2 446 94 554 2.40e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077600 AT1G04400.1 69.340 561 159 4 5 562 6 556 0.0 807
Msa0077600 AT1G04400.2 69.340 561 159 4 5 562 6 556 0.0 807
Msa0077600 AT4G08920.1 55.872 596 243 7 7 593 15 599 0.0 667
Msa0077600 AT3G15620.1 29.735 528 315 17 6 501 26 529 2.74e-53 191
Msa0077600 AT5G24850.1 30.105 475 270 20 2 444 82 526 4.12e-34 137
Msa0077600 AT3G15620.2 29.009 424 249 15 6 397 26 429 6.09e-32 129

Find 228 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTATGTTTCTAAATT+AGG 0.046710 1_2:+54571329 Msa0077600:five_prime_UTR
TCTGATAGCAATTCCTTTAT+TGG 0.107689 1_2:+54576214 Msa0077600:three_prime_UTR
CAAGGCTTTAACAGAATTTA+TGG 0.120110 1_2:+54573029 Msa0077600:CDS
ACTCTTCCTTGCACCCTTTC+AGG 0.148344 1_2:-54576114 None:intergenic
CACAGAAAACAGTTCATTTA+TGG 0.162448 1_2:-54575608 None:intergenic
TAAAATTGTCCTTCCTCTTT+AGG 0.172518 1_2:-54571832 None:intergenic
CAAGACTATCAAAATATTTA+AGG 0.174603 1_2:-54575714 None:intergenic
TCAGAAAGTGCCGGCATTTC+AGG 0.176635 1_2:+54574926 Msa0077600:CDS
TCGTCTACTAGATTAGTTTA+TGG 0.184761 1_2:-54575747 None:intergenic
GCCATATCTATATCAATTAT+TGG 0.201692 1_2:-54574732 None:intergenic
TGCCTTACATATTCTCCTTC+TGG 0.214099 1_2:-54574597 None:intergenic
AATGGGGAATGAAGTATTTC+TGG 0.219485 1_2:+54573499 Msa0077600:CDS
TGGCTATATTCTCAATAAAA+TGG 0.230875 1_2:+54575629 Msa0077600:three_prime_UTR
TCTTATCTAAGTTGAAAATA+AGG 0.233821 1_2:-54571176 None:intergenic
AATTTCCCACATCTTGAATA+TGG 0.234109 1_2:-54574775 None:intergenic
TTTGAAGCCTAGATATAATA+TGG 0.235090 1_2:+54571699 Msa0077600:exon
CTGTATTCCCTGTGTTTATA+TGG 0.246769 1_2:+54571806 Msa0077600:CDS
CTAATAGGTAGTTCATTCTT+AGG 0.252046 1_2:-54574951 None:intergenic
TTAATTATGTTTCTAAATTA+GGG 0.252907 1_2:+54571330 Msa0077600:five_prime_UTR
ATAATGTTATTAACTCAATA+AGG 0.254817 1_2:-54575999 None:intergenic
GTATTTCTGGGACACGCTTT+TGG 0.272715 1_2:+54573512 Msa0077600:CDS
GAACCATTGTTTGGTTTAGA+AGG 0.277961 1_2:+54571731 Msa0077600:CDS
AAGCTTGCTATGGAAATTCT+AGG 0.296623 1_2:+54576283 Msa0077600:three_prime_UTR
AAGAAAATCCACCAATCTAT+AGG 0.299613 1_2:-54576192 None:intergenic
ACTCATGAGAGAGCACTTCT+TGG 0.306648 1_2:+54573294 Msa0077600:CDS
CATGTGGGCTGAGTTGGTTT+TGG 0.306649 1_2:+54571411 Msa0077600:five_prime_UTR
TCCTTAAGGAGGACAACTTT+TGG 0.310889 1_2:-54574870 None:intergenic
CTAAGAATGAACTACCTATT+AGG 0.318143 1_2:+54574952 Msa0077600:CDS
TTGCATACTACTTTGCTATC+TGG 0.318194 1_2:-54571446 None:intergenic
AAATGTTCAATAGAGGATTT+AGG 0.326416 1_2:+54572931 Msa0077600:CDS
CAAGCAGCATCAAAAGCTTC+TGG 0.339324 1_2:+54574798 Msa0077600:CDS
CTCCAAGTCTTGAAGTTTGA+CGG 0.343433 1_2:-54573348 None:intergenic
TATTATACAAAAGGCCTTGA+TGG 0.344194 1_2:-54576139 None:intergenic
TTATCAGTGAAAAGCTATAA+TGG 0.349616 1_2:+54572508 Msa0077600:CDS
TGTTGCTTCTACCTTGGAAA+TGG 0.350799 1_2:+54573481 Msa0077600:CDS
TGCAAGCATCTCTGCCAAAA+AGG 0.354280 1_2:-54572595 None:intergenic
TTGCTACCCATATTATATCT+AGG 0.355825 1_2:-54571706 None:intergenic
TATCAGTGAAAAGCTATAAT+GGG 0.356330 1_2:+54572509 Msa0077600:CDS
CTGTAGAGCAAGTGTCTTCA+TGG 0.357346 1_2:-54575061 None:intergenic
CTGGATTGTCCTCAATTCTA+AGG 0.360401 1_2:-54571756 None:intergenic
ATTCCTTTATTGAGCCTTGA+TGG 0.361770 1_2:+54576029 Msa0077600:three_prime_UTR
TCCAAAAGTTGTCCTCCTTA+AGG 0.363395 1_2:+54574869 Msa0077600:CDS
CTCTTAGTCCAATTGCTCTA+AGG 0.366113 1_2:-54573236 None:intergenic
CAAGGTTGTTGCTCCAATAA+AGG 0.367546 1_2:-54576227 None:intergenic
ATAAGCTATAAGTACTTGTT+AGG 0.370776 1_2:+54571482 Msa0077600:five_prime_UTR
GTTGCTTCTACCTTGGAAAT+GGG 0.372170 1_2:+54573482 Msa0077600:CDS
ATGAGCACTGCAGCTGCTAC+TGG 0.373841 1_2:-54575570 None:intergenic
CACCACCTTGAAACTCTTCC+TGG 0.373919 1_2:-54571856 None:intergenic
TCCAATAATTGATATAGATA+TGG 0.381151 1_2:+54574731 Msa0077600:CDS
AAACCAAGCAACGCGTTACT+AGG 0.385656 1_2:+54572973 Msa0077600:CDS
CAGTGCTCATGGAAAGAAAA+TGG 0.390156 1_2:+54575583 Msa0077600:three_prime_UTR
TGTATGTAGGAATGGAAGAT+AGG 0.391374 1_2:-54571102 None:intergenic
TGCAGGAATGAGAGAACTTT+GGG 0.399544 1_2:+54573401 Msa0077600:CDS
TCTATATCAATTATTGGATT+CGG 0.400812 1_2:-54574726 None:intergenic
GTTGTGTTTAACCATCTCTA+TGG 0.405567 1_2:+54572006 Msa0077600:CDS
ATATGCATCAAGTTCCAAAA+AGG 0.405729 1_2:-54575808 None:intergenic
TTATCCCCGTATCTCCATTT+CGG 0.407052 1_2:+54573114 Msa0077600:CDS
TGGTCTCGAACCAGTGAAAC+AGG 0.407880 1_2:-54572454 None:intergenic
TTCCCATCAAGGCTCAATAA+AGG 0.408230 1_2:-54576032 None:intergenic
AGAAAATCCACCAATCTATA+GGG 0.409775 1_2:-54576191 None:intergenic
CTCATTCCTGCATCAACTAA+AGG 0.411661 1_2:-54573390 None:intergenic
ATAAGTATTAAGAATAAGAT+TGG 0.412388 1_2:-54576079 None:intergenic
CGTCCTAGTAACGCGTTGCT+TGG 0.415085 1_2:-54572976 None:intergenic
CGCTCAAGCTCGTGACCGTC+TGG 0.421155 1_2:-54573588 None:intergenic
ATGAGAGAACTTTGGGCTAC+AGG 0.422513 1_2:+54573408 Msa0077600:CDS
ATATTTAAGGACTTCTCATT+CGG 0.428113 1_2:-54575701 None:intergenic
CTTAGTGTGCTTAGAGCATC+AGG 0.428735 1_2:+54574681 Msa0077600:CDS
CAAGGTGGAATAAGCGAAAC+AGG 0.434780 1_2:-54572631 None:intergenic
TTTATCAGATCCTGTTTCAC+TGG 0.435781 1_2:+54572444 Msa0077600:intron
CTTATCTAAGTTGAAAATAA+GGG 0.436200 1_2:-54571175 None:intergenic
GTAGCAATAGAACCATTGTT+TGG 0.440981 1_2:+54571722 Msa0077600:CDS
TGTCCCTTTCACAAGTTTGA+AGG 0.442030 1_2:-54571390 None:intergenic
CAGCACTAGCTGCTGCTGCT+AGG 0.442114 1_2:+54571776 Msa0077600:CDS
ATGCAGGAATGAGAGAACTT+TGG 0.446720 1_2:+54573400 Msa0077600:CDS
TCTTGAATATGGCTTGAGTC+AGG 0.448589 1_2:-54574764 None:intergenic
CTAGCAGCAGCAGCTAGTGC+TGG 0.448793 1_2:-54571775 None:intergenic
TGAAAATGTTGCTTCTACCT+TGG 0.450718 1_2:+54573475 Msa0077600:CDS
GATGTAACCTCCTCTGATGA+TGG 0.452559 1_2:+54576250 Msa0077600:three_prime_UTR
TCTCGAACCAAGTGATTTCA+AGG 0.453164 1_2:-54571911 None:intergenic
TCACACTCAACTCTCCGAAA+TGG 0.453446 1_2:-54573128 None:intergenic
ACTATCTTTCACATGATTCA+CGG 0.453888 1_2:-54575021 None:intergenic
TAATGTTATTAACTCAATAA+GGG 0.454184 1_2:-54575998 None:intergenic
TTGAAACTATAACTCTGATT+CGG 0.455014 1_2:-54573443 None:intergenic
AAAGTAGTGTCCCTATAGAT+TGG 0.456375 1_2:+54576181 Msa0077600:three_prime_UTR
TTGGAACTTGATGCATATGA+AGG 0.457765 1_2:+54575813 Msa0077600:three_prime_UTR
CACTACTTTGAAAGAAGTCT+TGG 0.464493 1_2:-54576167 None:intergenic
GGCTACCCTTTAGTTGATGC+AGG 0.466577 1_2:+54573384 Msa0077600:CDS
TTGGCACATTATTATACAAA+AGG 0.466771 1_2:-54576148 None:intergenic
TCATTCCTGCATCAACTAAA+GGG 0.470820 1_2:-54573389 None:intergenic
CTGAGTGGATCCATCATCCT+TGG 0.471071 1_2:+54574649 Msa0077600:CDS
CCAAAATCTTATCAAAGAAA+AGG 0.471643 1_2:-54571141 None:intergenic
AGCACTAGCTGCTGCTGCTA+GGG 0.473785 1_2:+54571777 Msa0077600:CDS
GAGATGCTTGCACAAGCAAA+TGG 0.474718 1_2:+54572606 Msa0077600:CDS
CGGTCACGAGCTTGAGCGCT+TGG 0.474915 1_2:+54573593 Msa0077600:CDS
TAGAAGGGACCTTAGAATTG+AGG 0.477865 1_2:+54571747 Msa0077600:CDS
AACTCTCCGAAATGGAGATA+CGG 0.477912 1_2:-54573120 None:intergenic
CTCGGCTGGCAGTATATCTC+AGG 0.480304 1_2:+54573558 Msa0077600:CDS
CCTTGATGGGAACTCATCAT+TGG 0.480346 1_2:+54576043 Msa0077600:three_prime_UTR
CTAGCTGCTGCTGCTAGGGA+TGG 0.482748 1_2:+54571781 Msa0077600:CDS
AAAGAAAAGCTAGTGGAACT+TGG 0.484127 1_2:+54572484 Msa0077600:CDS
ATCCGTCAAACTTCAAGACT+TGG 0.488443 1_2:+54573346 Msa0077600:CDS
AGTCAAGAAATGTTCAATAG+AGG 0.489309 1_2:+54572924 Msa0077600:CDS
CTAGGACGAGCATGGTCTCC+AGG 0.489522 1_2:+54572991 Msa0077600:CDS
ACTCTCCGAAATGGAGATAC+GGG 0.489556 1_2:-54573119 None:intergenic
TTCTTAGGATCCTGAAATGC+CGG 0.490558 1_2:-54574936 None:intergenic
GACATGTATACATGCTAGAA+AGG 0.494362 1_2:+54575856 Msa0077600:three_prime_UTR
ATCCAGAAGGAGAATATGTA+AGG 0.496224 1_2:+54574595 Msa0077600:CDS
GATCAGTCCTTGAAATCACT+TGG 0.496518 1_2:+54571904 Msa0077600:CDS
ATGCCTTCAAACTTGTGAAA+GGG 0.496931 1_2:+54571387 Msa0077600:five_prime_UTR
TACTTCACTACTCCAAGAAT+AGG 0.498999 1_2:+54573061 Msa0077600:CDS
GAGTACTCTCAATGCTCTCT+TGG 0.499541 1_2:+54571954 Msa0077600:CDS
AGTAGCAGCTGCAGTGCTCA+TGG 0.499803 1_2:+54575572 Msa0077600:three_prime_UTR
GGATCTGTTGTATGAGCCTT+GGG 0.500509 1_2:+54572531 Msa0077600:CDS
CTTTATTGGAGCAACAACCT+TGG 0.503468 1_2:+54576228 Msa0077600:three_prime_UTR
TTTATCCAGGAAGAGTTTCA+AGG 0.505143 1_2:+54571851 Msa0077600:CDS
TTGTCAGCATTGCTCCAACC+TGG 0.505947 1_2:-54573009 None:intergenic
AACCATTGTTTGGTTTAGAA+GGG 0.509245 1_2:+54571732 Msa0077600:CDS
AGATCACATGTCAAGGAGAA+AGG 0.510272 1_2:-54571020 None:intergenic
TGAAGAGAAGAGAAAGAACA+AGG 0.511587 1_2:+54574992 Msa0077600:CDS
CTACTCCAAGAATAGGCAAA+AGG 0.511893 1_2:+54573068 Msa0077600:CDS
AAGGGACATGTGGGCTGAGT+TGG 0.512399 1_2:+54571405 Msa0077600:five_prime_UTR
TTCCTTTATTGAGCCTTGAT+GGG 0.513632 1_2:+54576030 Msa0077600:three_prime_UTR
ATTATACAAAAGGCCTTGAT+GGG 0.516458 1_2:-54576138 None:intergenic
AGCCGAGGATATCACATTCA+AGG 0.517876 1_2:-54573542 None:intergenic
AGCTTCTGGCTCTGAAGCAA+GGG 0.519234 1_2:+54574812 Msa0077600:CDS
CAAACTTGAGAACTAAGATA+AGG 0.520144 1_2:-54571240 None:intergenic
ATGGGGAATGAAGTATTTCT+GGG 0.522424 1_2:+54573500 Msa0077600:CDS
GAAGCAGTCTTTAGTTCACT+TGG 0.523042 1_2:+54571882 Msa0077600:CDS
AAGCTTCTGGCTCTGAAGCA+AGG 0.524562 1_2:+54574811 Msa0077600:CDS
TGTTCACAAGTGTTTATCAC+CGG 0.530213 1_2:-54576327 None:intergenic
CAGGAAGAGTTTCAAGGTGG+TGG 0.530377 1_2:+54571857 Msa0077600:CDS
GTCGATGTCCCTCCACTGCA+TGG 0.531062 1_2:-54576511 None:intergenic
GATGCCTTCAAACTTGTGAA+AGG 0.535690 1_2:+54571386 Msa0077600:five_prime_UTR
ACATGCAGTGTATGTAGGAA+TGG 0.537066 1_2:-54571110 None:intergenic
TTGTGGAACAGAAAATGAAT+AGG 0.538477 1_2:-54575120 None:intergenic
GTTTACAAAGAAGCTTGCTA+TGG 0.539191 1_2:+54576273 Msa0077600:three_prime_UTR
TCGCATAAAGCAGATATTGT+GGG 0.539284 1_2:+54573170 Msa0077600:CDS
GGGATCTGTTGTATGAGCCT+TGG 0.542320 1_2:+54572530 Msa0077600:CDS
ATGTAACCTCCTCTGATGAT+GGG 0.543378 1_2:+54576251 Msa0077600:three_prime_UTR
CTCAAGCCATATTCAAGATG+TGG 0.544153 1_2:+54574769 Msa0077600:CDS
AAGAATAGGCAAAAGGTTGG+TGG 0.546393 1_2:+54573075 Msa0077600:CDS
GACGAGCATGGTCTCCAGGT+TGG 0.548035 1_2:+54572995 Msa0077600:CDS
GTTGGCATTCTCGCCAACTC+AGG 0.548803 1_2:-54574627 None:intergenic
TTGAAGCCTAGATATAATAT+GGG 0.550311 1_2:+54571700 Msa0077600:exon
GTGGTGCATTCCAAGGATGA+TGG 0.551180 1_2:-54574659 None:intergenic
AAGGCAATGGCTACCTGAGT+TGG 0.551193 1_2:+54574614 Msa0077600:CDS
CAATAACATGCAGTGTATGT+AGG 0.551922 1_2:-54571115 None:intergenic
TTGAATGTGATATCCTCGGC+TGG 0.555532 1_2:+54573544 Msa0077600:CDS
AGGTTGGAGCAATGCTGACA+AGG 0.556873 1_2:+54573011 Msa0077600:CDS
TGCTACTGGATTTATAGATA+AGG 0.557884 1_2:-54575556 None:intergenic
TTGGGAAGTATATGATGAGA+AGG 0.559387 1_2:+54572549 Msa0077600:CDS
ACTTGGAGACAAGGTAGGAC+TGG 0.559715 1_2:+54573363 Msa0077600:CDS
TACTTCATTCCCCATTTCCA+AGG 0.559892 1_2:-54573492 None:intergenic
AGAGCATCAGGAGTCGAGCT+AGG 0.561014 1_2:+54574693 Msa0077600:CDS
TTCTCATCATATACTTCCCA+AGG 0.561654 1_2:-54572547 None:intergenic
TGAGCGCTTGGATGATCCTG+AGG 0.562126 1_2:+54573605 Msa0077600:CDS
TTAATGTGCATACCTTCAGC+AGG 0.564087 1_2:-54572664 None:intergenic
GGATCTAGGTTTGATCCAGA+AGG 0.564228 1_2:+54574582 Msa0077600:CDS
CTGTTTCGCTTATTCCACCT+TGG 0.564355 1_2:+54572632 Msa0077600:CDS
GCAAGGAAGAGTTCCCATCA+AGG 0.565323 1_2:+54576125 Msa0077600:three_prime_UTR
GTTTATATGGTGTCCTAAAG+AGG 0.569764 1_2:+54571819 Msa0077600:CDS
ACACTAAGTGGTGCATTCCA+AGG 0.571610 1_2:-54574666 None:intergenic
TGGCAATTAATTCCTGCTGA+AGG 0.571990 1_2:+54572652 Msa0077600:CDS
TTGCTTCTACCTTGGAAATG+GGG 0.574156 1_2:+54573483 Msa0077600:CDS
GACCTTGAATGTGATATCCT+CGG 0.577392 1_2:+54573540 Msa0077600:CDS
AGCTAATGATCAGAAAGTGC+CGG 0.577971 1_2:+54574917 Msa0077600:CDS
CTCGCATAAAGCAGATATTG+TGG 0.579056 1_2:+54573169 Msa0077600:CDS
CCAATGATGAGTTCCCATCA+AGG 0.579073 1_2:-54576043 None:intergenic
AAACTTGTGAAAGGGACATG+TGG 0.579526 1_2:+54571395 Msa0077600:five_prime_UTR
TCAAGCCATATTCAAGATGT+GGG 0.581508 1_2:+54574770 Msa0077600:CDS
TACATAGTCAAAGTCTACAT+TGG 0.582002 1_2:+54575974 Msa0077600:three_prime_UTR
AGCTTGCTATGGAAATTCTA+GGG 0.582029 1_2:+54576284 Msa0077600:three_prime_UTR
TAGCAAAGTAGTATGCAAGT+TGG 0.582266 1_2:+54571451 Msa0077600:five_prime_UTR
GAAGATGAGGAACATTGTTG+TGG 0.582759 1_2:-54575137 None:intergenic
CTTTGTAAACCCATCATCAG+AGG 0.583687 1_2:-54576260 None:intergenic
AAGGAGAATATGTAAGGCAA+TGG 0.584996 1_2:+54574601 Msa0077600:CDS
CAGATATTGTGGGGAAACGA+AGG 0.585311 1_2:+54573180 Msa0077600:CDS
CAAGAGATCCATGCAGTGGA+GGG 0.587364 1_2:+54576503 Msa0077600:three_prime_UTR
GAGAACTTTGGGCTACAGGA+TGG 0.589010 1_2:+54573412 Msa0077600:CDS
GGATGATGGATCCACTCAGT+TGG 0.589489 1_2:-54574645 None:intergenic
TCCAAGAATAGGCAAAAGGT+TGG 0.591255 1_2:+54573072 Msa0077600:CDS
AGTGCTCTCTCATGAGTGAA+CGG 0.592898 1_2:-54573288 None:intergenic
ATCAGAGGAGGTTACATCCA+AGG 0.595406 1_2:-54576245 None:intergenic
TCACAGCCTGAAAGGGTGCA+AGG 0.598339 1_2:+54576108 Msa0077600:three_prime_UTR
AAGTAAATAATATACAATGT+TGG 0.599908 1_2:-54575676 None:intergenic
GATGCTCTAAGCACACTAAG+TGG 0.600085 1_2:-54574678 None:intergenic
GGAAACGAAGGCAACAGTGT+TGG 0.600244 1_2:+54573192 Msa0077600:CDS
ATACTACTTTGCTATCTGGA+AGG 0.601501 1_2:-54571442 None:intergenic
CTGAGATATACTGCCAGCCG+AGG 0.601742 1_2:-54573557 None:intergenic
GTAGTGTCCCTATAGATTGG+TGG 0.603110 1_2:+54576184 Msa0077600:three_prime_UTR
TTTGACGGATCAGCATTCCA+AGG 0.608296 1_2:-54573333 None:intergenic
TCAAGACTTGGAGACAAGGT+AGG 0.609400 1_2:+54573358 Msa0077600:CDS
TCAGCAGGAATTAATTGCCA+AGG 0.610860 1_2:-54572649 None:intergenic
TTTCATGCAGGGGCGACAGG+AGG 0.611889 1_2:+54575523 Msa0077600:intron
ATATGGTGTCCTAAAGAGGA+AGG 0.616143 1_2:+54571823 Msa0077600:CDS
TTAGGACACCATATAAACAC+AGG 0.616586 1_2:-54571814 None:intergenic
TTGACGGATCAGCATTCCAA+GGG 0.619378 1_2:-54573332 None:intergenic
AACTTCAAGACTTGGAGACA+AGG 0.622090 1_2:+54573354 Msa0077600:CDS
CGCATAAAGCAGATATTGTG+GGG 0.626353 1_2:+54573171 Msa0077600:CDS
AGCACTACTTACCATAGAGA+TGG 0.626546 1_2:-54572017 None:intergenic
CAACATCAAAGAAAAGCTAG+TGG 0.627181 1_2:+54572477 Msa0077600:CDS
ATCTCAGGATGCTTACCAGA+CGG 0.628095 1_2:+54573573 Msa0077600:CDS
TGTAAACCCATCATCAGAGG+AGG 0.632539 1_2:-54576257 None:intergenic
TTCTCACTAGGCATAAGTCA+TGG 0.633959 1_2:+54575777 Msa0077600:three_prime_UTR
ATCAGTGAAAAGCTATAATG+GGG 0.635939 1_2:+54572510 Msa0077600:CDS
GTCCCTTCTAAACCAAACAA+TGG 0.637331 1_2:-54571734 None:intergenic
GTTCACAAGTGTTTATCACC+GGG 0.640346 1_2:-54576326 None:intergenic
TTAAATGTAATCATATATGT+CGG 0.641334 1_2:+54575889 Msa0077600:three_prime_UTR
GGATCTCTTGTTGTAAACGT+TGG 0.641567 1_2:-54576490 None:intergenic
ACGCGTTACTAGGACGAGCA+TGG 0.642349 1_2:+54572983 Msa0077600:CDS
GCAGGAATTAATTGCCAAGG+TGG 0.644364 1_2:-54572646 None:intergenic
AATGTAATCATATATGTCGG+TGG 0.647016 1_2:+54575892 Msa0077600:three_prime_UTR
GTGGAGAAGATCACATGTCA+AGG 0.648414 1_2:-54571027 None:intergenic
ACAAGAGATCCATGCAGTGG+AGG 0.649604 1_2:+54576502 Msa0077600:three_prime_UTR
TTAGCTGAAATAGTAGCAGA+CGG 0.651586 1_2:-54574900 None:intergenic
AACTTGTGAAAGGGACATGT+GGG 0.652408 1_2:+54571396 Msa0077600:five_prime_UTR
TGGGAAGTATATGATGAGAA+GGG 0.652926 1_2:+54572550 Msa0077600:CDS
TGGCGAGAATGCCAACTGAG+TGG 0.660213 1_2:+54574634 Msa0077600:CDS
ATTTCGGAGAGTTGAGTGTG+AGG 0.666895 1_2:+54573130 Msa0077600:CDS
ACAACAAGAGATCCATGCAG+TGG 0.685539 1_2:+54576499 Msa0077600:three_prime_UTR
CTCTCCGAAATGGAGATACG+GGG 0.691586 1_2:-54573118 None:intergenic
ATCCAGGAAGAGTTTCAAGG+TGG 0.698355 1_2:+54571854 Msa0077600:CDS
ATATGATTGAGTGTGTGTGA+AGG 0.700592 1_2:-54571073 None:intergenic
ATACGGGGATAACAGCGAGG+TGG 0.704873 1_2:-54573103 None:intergenic
GACGATAAATTATTCTCACT+AGG 0.709024 1_2:+54575765 Msa0077600:three_prime_UTR
TAGGACACCATATAAACACA+GGG 0.720737 1_2:-54571813 None:intergenic
GAGATACGGGGATAACAGCG+AGG 0.744456 1_2:-54573106 None:intergenic
ATTAGTGTATGATGATCACG+TGG 0.765451 1_2:-54571046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATGTTTCTAAATTA+GGG + chr1_2:54571330-54571349 Msa0077600:five_prime_UTR 10.0%
!! AAAATACACAAAAAAAAATA+TGG - chr1_2:54571360-54571379 None:intergenic 10.0%
!!! GTTAATTATGTTTCTAAATT+AGG + chr1_2:54571329-54571348 Msa0077600:five_prime_UTR 15.0%
!!! TTCATTTATAGTATAGTTTT+TGG + chr1_2:54572703-54572722 Msa0077600:intron 15.0%
!! TGAATAAATTATTGAATACA+GGG - chr1_2:54573683-54573702 None:intergenic 15.0%
!! TTGAATAAATTATTGAATAC+AGG - chr1_2:54573684-54573703 None:intergenic 15.0%
!! GCTTATAACATATATTAAAA+TGG - chr1_2:54574264-54574283 None:intergenic 15.0%
!! AAGTAAATAATATACAATGT+TGG - chr1_2:54575679-54575698 None:intergenic 15.0%
!! TTAAATGTAATCATATATGT+CGG + chr1_2:54575889-54575908 Msa0077600:three_prime_UTR 15.0%
!! ATAAGTATTAAGAATAAGAT+TGG - chr1_2:54576082-54576101 None:intergenic 15.0%
!!! CTTATCTAAGTTGAAAATAA+GGG - chr1_2:54571178-54571197 None:intergenic 20.0%
!!! TCTTATCTAAGTTGAAAATA+AGG - chr1_2:54571179-54571198 None:intergenic 20.0%
!! AAAATTGATACACTAAAAAC+TGG - chr1_2:54571601-54571620 None:intergenic 20.0%
!!! AAACCATTTTTAAACTTTTG+AGG + chr1_2:54571649-54571668 Msa0077600:five_prime_UTR 20.0%
!!! TTTGGTTACACTTAATATTT+TGG + chr1_2:54572116-54572135 Msa0077600:intron 20.0%
!!! TTTTTCTATTAGTAACATAG+AGG + chr1_2:54572168-54572187 Msa0077600:intron 20.0%
!! TTGTTGTATCATAATAACTA+TGG - chr1_2:54572867-54572886 None:intergenic 20.0%
!!! TAGATAATAGCTTTTATATC+TGG + chr1_2:54573859-54573878 Msa0077600:intron 20.0%
!! TAAAATTTCAAAGTACAAAC+TGG - chr1_2:54573986-54574005 None:intergenic 20.0%
!!! TATAGGAAACAAGTTTTATT+AGG + chr1_2:54574462-54574481 Msa0077600:intron 20.0%
!! TCTATATCAATTATTGGATT+CGG - chr1_2:54574729-54574748 None:intergenic 20.0%
!! TCCAATAATTGATATAGATA+TGG + chr1_2:54574731-54574750 Msa0077600:CDS 20.0%
!!! ATCCTTAGGTTTATTTTTTT+AGG + chr1_2:54575340-54575359 Msa0077600:intron 20.0%
!!! TCCTTAGGTTTATTTTTTTA+GGG + chr1_2:54575341-54575360 Msa0077600:intron 20.0%
!! CAAGACTATCAAAATATTTA+AGG - chr1_2:54575717-54575736 None:intergenic 20.0%
! CCAAAATCTTATCAAAGAAA+AGG - chr1_2:54571144-54571163 None:intergenic 25.0%
!! CCTTTTCTTTGATAAGATTT+TGG + chr1_2:54571141-54571160 Msa0077600:five_prime_UTR 25.0%
! ATAAGCTATAAGTACTTGTT+AGG + chr1_2:54571482-54571501 Msa0077600:five_prime_UTR 25.0%
! TCACCTCAAAAGTTTAAAAA+TGG - chr1_2:54571655-54571674 None:intergenic 25.0%
!! TTTGAAGCCTAGATATAATA+TGG + chr1_2:54571699-54571718 Msa0077600:exon 25.0%
! TTGAAGCCTAGATATAATAT+GGG + chr1_2:54571700-54571719 Msa0077600:exon 25.0%
!!! GATTTGATTTGATTCATGTT+TGG + chr1_2:54572098-54572117 Msa0077600:intron 25.0%
! ATGTTACTAATAGAAAAAGC+CGG - chr1_2:54572166-54572185 None:intergenic 25.0%
! TTATCAGTGAAAAGCTATAA+TGG + chr1_2:54572508-54572527 Msa0077600:CDS 25.0%
! TATCAGTGAAAAGCTATAAT+GGG + chr1_2:54572509-54572528 Msa0077600:CDS 25.0%
!!! TATAGTTTTTGGTTCTACAT+TGG + chr1_2:54572714-54572733 Msa0077600:intron 25.0%
!! AAAAGATGATACTTTCGTTT+TGG - chr1_2:54572830-54572849 None:intergenic 25.0%
! AAATGTTCAATAGAGGATTT+AGG + chr1_2:54572931-54572950 Msa0077600:CDS 25.0%
! TTGAAACTATAACTCTGATT+CGG - chr1_2:54573446-54573465 None:intergenic 25.0%
! ATAAATTATTGAATACAGGG+TGG - chr1_2:54573680-54573699 None:intergenic 25.0%
! CAAATTAGATATTTAACGAG+CGG - chr1_2:54573914-54573933 None:intergenic 25.0%
!!! TTGCTTTTAACACAGATTAT+TGG + chr1_2:54573931-54573950 Msa0077600:intron 25.0%
! TAAGTTCGTTTATTCAAACA+GGG - chr1_2:54574156-54574175 None:intergenic 25.0%
!!! GGTATTACTTTTTCGTATAT+AGG + chr1_2:54574445-54574464 Msa0077600:intron 25.0%
! GCCATATCTATATCAATTAT+TGG - chr1_2:54574735-54574754 None:intergenic 25.0%
! TCCCTAAAAAAATAAACCTA+AGG - chr1_2:54575345-54575364 None:intergenic 25.0%
!! AAGAATTTTCATTTTCATGC+AGG + chr1_2:54575511-54575530 Msa0077600:intron 25.0%
!! AGAATTTTCATTTTCATGCA+GGG + chr1_2:54575512-54575531 Msa0077600:intron 25.0%
! TGGCTATATTCTCAATAAAA+TGG + chr1_2:54575629-54575648 Msa0077600:three_prime_UTR 25.0%
! ATATTTAAGGACTTCTCATT+CGG - chr1_2:54575704-54575723 None:intergenic 25.0%
!! CATTTTCGTATATGAAGTAT+CGG + chr1_2:54575948-54575967 Msa0077600:three_prime_UTR 25.0%
! TTGGCACATTATTATACAAA+AGG - chr1_2:54576151-54576170 None:intergenic 25.0%
!!! CTATATTTTTGGATAAAACC+CGG + chr1_2:54576308-54576327 Msa0077600:three_prime_UTR 25.0%
CAAACTTGAGAACTAAGATA+AGG - chr1_2:54571243-54571262 None:intergenic 30.0%
TTGCTACCCATATTATATCT+AGG - chr1_2:54571709-54571728 None:intergenic 30.0%
! AACCATTGTTTGGTTTAGAA+GGG + chr1_2:54571732-54571751 Msa0077600:CDS 30.0%
TAAAATTGTCCTTCCTCTTT+AGG - chr1_2:54571835-54571854 None:intergenic 30.0%
GTAAAATGCTGGATTCTTAT+TGG + chr1_2:54572261-54572280 Msa0077600:intron 30.0%
GAACTGTAAAGAAACATATC+AGG - chr1_2:54572385-54572404 None:intergenic 30.0%
ACAATCATGGTACAAAATGT+TGG - chr1_2:54572424-54572443 None:intergenic 30.0%
AGGATCTGATAAAACAATCA+TGG - chr1_2:54572437-54572456 None:intergenic 30.0%
ATCAGTGAAAAGCTATAATG+GGG + chr1_2:54572510-54572529 Msa0077600:CDS 30.0%
AGTAAGTTAGTAGTTGTGTT+GGG - chr1_2:54572794-54572813 None:intergenic 30.0%
TAGTAAGTTAGTAGTTGTGT+TGG - chr1_2:54572795-54572814 None:intergenic 30.0%
!! ATGATACTTTCGTTTTGGAT+AGG - chr1_2:54572825-54572844 None:intergenic 30.0%
AGTCAAGAAATGTTCAATAG+AGG + chr1_2:54572924-54572943 Msa0077600:CDS 30.0%
! CAAGGCTTTAACAGAATTTA+TGG + chr1_2:54573029-54573048 Msa0077600:CDS 30.0%
!! TGTGAGGAAAGTTTTTCAAA+TGG + chr1_2:54573146-54573165 Msa0077600:CDS 30.0%
TCCAATCAACTGCATAAATT+TGG + chr1_2:54573821-54573840 Msa0077600:intron 30.0%
ACCAAATTTATGCAGTTGAT+TGG - chr1_2:54573825-54573844 None:intergenic 30.0%
CAACTATTATAGTCATGCTA+AGG - chr1_2:54574096-54574115 None:intergenic 30.0%
GTAAGTTCGTTTATTCAAAC+AGG - chr1_2:54574157-54574176 None:intergenic 30.0%
!! GCTATTTTCGTAAACTATCT+TGG + chr1_2:54574282-54574301 Msa0077600:intron 30.0%
AAACTATCTTGGAGATCTTA+TGG + chr1_2:54574293-54574312 Msa0077600:intron 30.0%
! AATGAACAGATAACAGCTTT+TGG + chr1_2:54574317-54574336 Msa0077600:intron 30.0%
AGTAATACCAATCTCACTTA+GGG - chr1_2:54574434-54574453 None:intergenic 30.0%
AAGTAATACCAATCTCACTT+AGG - chr1_2:54574435-54574454 None:intergenic 30.0%
!! GTTTTATTAGGTTTGTTCGT+TGG + chr1_2:54574474-54574493 Msa0077600:intron 30.0%
! TAGCGTGATTTCTCTAATTT+TGG + chr1_2:54574536-54574555 Msa0077600:intron 30.0%
! TCATTGTTTGTCCAGATTTT+AGG + chr1_2:54574561-54574580 Msa0077600:intron 30.0%
AATTTCCCACATCTTGAATA+TGG - chr1_2:54574778-54574797 None:intergenic 30.0%
CTAATAGGTAGTTCATTCTT+AGG - chr1_2:54574954-54574973 None:intergenic 30.0%
CTAAGAATGAACTACCTATT+AGG + chr1_2:54574952-54574971 Msa0077600:CDS 30.0%
! CATTTTGTTCTCTTCCTAAT+AGG - chr1_2:54574969-54574988 None:intergenic 30.0%
ACTATCTTTCACATGATTCA+CGG - chr1_2:54575024-54575043 None:intergenic 30.0%
TTGTGGAACAGAAAATGAAT+AGG - chr1_2:54575123-54575142 None:intergenic 30.0%
! CCATTTTAGATTTGAAGATG+AGG - chr1_2:54575153-54575172 None:intergenic 30.0%
CCTCATCTTCAAATCTAAAA+TGG + chr1_2:54575150-54575169 Msa0077600:intron 30.0%
!! AGTTACTTCTATTTTTCTCG+TGG - chr1_2:54575285-54575304 None:intergenic 30.0%
ACCTAAGGATTAAATTGTCT+CGG - chr1_2:54575330-54575349 None:intergenic 30.0%
! AAGAGTGAAGACTCATTTTA+GGG - chr1_2:54575229-54575248 None:intergenic 30.0%
! AAAGAGTGAAGACTCATTTT+AGG - chr1_2:54575395-54575414 None:intergenic 30.0%
ATCACTGTGTTTCATAATGA+GGG + chr1_2:54575435-54575454 Msa0077600:intron 30.0%
!!! CACTCTTTTTTACACTTTGT+TGG + chr1_2:54575468-54575487 Msa0077600:intron 30.0%
! GAATTTTCATTTTCATGCAG+GGG + chr1_2:54575513-54575532 Msa0077600:intron 30.0%
TGCTACTGGATTTATAGATA+AGG - chr1_2:54575559-54575578 None:intergenic 30.0%
CACAGAAAACAGTTCATTTA+TGG - chr1_2:54575611-54575630 None:intergenic 30.0%
! CATAAATGAACTGTTTTCTG+TGG + chr1_2:54575609-54575628 Msa0077600:three_prime_UTR 30.0%
!! TCGTCTACTAGATTAGTTTA+TGG - chr1_2:54575750-54575769 None:intergenic 30.0%
GACGATAAATTATTCTCACT+AGG + chr1_2:54575765-54575784 Msa0077600:three_prime_UTR 30.0%
ATATGCATCAAGTTCCAAAA+AGG - chr1_2:54575811-54575830 None:intergenic 30.0%
AATGTAATCATATATGTCGG+TGG + chr1_2:54575892-54575911 Msa0077600:three_prime_UTR 30.0%
TACATAGTCAAAGTCTACAT+TGG + chr1_2:54575974-54575993 Msa0077600:three_prime_UTR 30.0%
!! ATTTTATTTCACAGCCTGAA+AGG + chr1_2:54576100-54576119 Msa0077600:three_prime_UTR 30.0%
!! TTTTATTTCACAGCCTGAAA+GGG + chr1_2:54576101-54576120 Msa0077600:three_prime_UTR 30.0%
ATTATACAAAAGGCCTTGAT+GGG - chr1_2:54576141-54576160 None:intergenic 30.0%
TATTATACAAAAGGCCTTGA+TGG - chr1_2:54576142-54576161 None:intergenic 30.0%
AGAAAATCCACCAATCTATA+GGG - chr1_2:54576194-54576213 None:intergenic 30.0%
AAGAAAATCCACCAATCTAT+AGG - chr1_2:54576195-54576214 None:intergenic 30.0%
TCTGATAGCAATTCCTTTAT+TGG + chr1_2:54576214-54576233 Msa0077600:three_prime_UTR 30.0%
!!! AATTCTAGGGCCTATATTTT+TGG + chr1_2:54576297-54576316 Msa0077600:three_prime_UTR 30.0%
!! CGGGTTTTATCCAAAAATAT+AGG - chr1_2:54576310-54576329 None:intergenic 30.0%
!! TCATTTGTTATAAGCTGCAA+AGG + chr1_2:54576352-54576371 Msa0077600:intron 30.0%
ATTAGTGTATGATGATCACG+TGG - chr1_2:54571049-54571068 None:intergenic 35.0%
ATATGATTGAGTGTGTGTGA+AGG - chr1_2:54571076-54571095 None:intergenic 35.0%
TGTATGTAGGAATGGAAGAT+AGG - chr1_2:54571105-54571124 None:intergenic 35.0%
CAATAACATGCAGTGTATGT+AGG - chr1_2:54571118-54571137 None:intergenic 35.0%
ATGCCTTCAAACTTGTGAAA+GGG + chr1_2:54571387-54571406 Msa0077600:five_prime_UTR 35.0%
! ATACTACTTTGCTATCTGGA+AGG - chr1_2:54571445-54571464 None:intergenic 35.0%
! TTGCATACTACTTTGCTATC+TGG - chr1_2:54571449-54571468 None:intergenic 35.0%
TAGCAAAGTAGTATGCAAGT+TGG + chr1_2:54571451-54571470 Msa0077600:five_prime_UTR 35.0%
! CTATTTTCAGCAGTGATTTG+AGG + chr1_2:54571506-54571525 Msa0077600:five_prime_UTR 35.0%
TAAAAACTGGCTACAAAGGT+TGG - chr1_2:54571588-54571607 None:intergenic 35.0%
ACACTAAAAACTGGCTACAA+AGG - chr1_2:54571592-54571611 None:intergenic 35.0%
GTAGCAATAGAACCATTGTT+TGG + chr1_2:54571722-54571741 Msa0077600:CDS 35.0%
! GAACCATTGTTTGGTTTAGA+AGG + chr1_2:54571731-54571750 Msa0077600:CDS 35.0%
CTGTATTCCCTGTGTTTATA+TGG + chr1_2:54571806-54571825 Msa0077600:CDS 35.0%
TAGGACACCATATAAACACA+GGG - chr1_2:54571816-54571835 None:intergenic 35.0%
TTAGGACACCATATAAACAC+AGG - chr1_2:54571817-54571836 None:intergenic 35.0%
GTTTATATGGTGTCCTAAAG+AGG + chr1_2:54571819-54571838 Msa0077600:CDS 35.0%
TTTATCCAGGAAGAGTTTCA+AGG + chr1_2:54571851-54571870 Msa0077600:CDS 35.0%
GTTGTGTTTAACCATCTCTA+TGG + chr1_2:54572006-54572025 Msa0077600:CDS 35.0%
!! TGGTAAGTAGTGCTGTTTAT+AGG + chr1_2:54572026-54572045 Msa0077600:intron 35.0%
CAAAAGTTGAAGAATCAAGC+CGG + chr1_2:54572144-54572163 Msa0077600:intron 35.0%
GTTATGTGTGGCAAAATGAA+GGG - chr1_2:54572240-54572259 None:intergenic 35.0%
AGTTATGTGTGGCAAAATGA+AGG - chr1_2:54572241-54572260 None:intergenic 35.0%
! CAGCATTTTACAGTTATGTG+TGG - chr1_2:54572252-54572271 None:intergenic 35.0%
CACACATAACTGTAAAATGC+TGG + chr1_2:54572250-54572269 Msa0077600:intron 35.0%
TTTATCAGATCCTGTTTCAC+TGG + chr1_2:54572444-54572463 Msa0077600:intron 35.0%
!! CTAGCTTTTCTTTGATGTTG+TGG - chr1_2:54572477-54572496 None:intergenic 35.0%
CAACATCAAAGAAAAGCTAG+TGG + chr1_2:54572477-54572496 Msa0077600:CDS 35.0%
AAAGAAAAGCTAGTGGAACT+TGG + chr1_2:54572484-54572503 Msa0077600:CDS 35.0%
TTCTCATCATATACTTCCCA+AGG - chr1_2:54572550-54572569 None:intergenic 35.0%
! TTGGGAAGTATATGATGAGA+AGG + chr1_2:54572549-54572568 Msa0077600:CDS 35.0%
! TGGGAAGTATATGATGAGAA+GGG + chr1_2:54572550-54572569 Msa0077600:CDS 35.0%
! TTACAACCTTCGATCCTTTT+TGG + chr1_2:54572581-54572600 Msa0077600:CDS 35.0%
!! TTCTACATTGGTAGCTTTGT+TGG + chr1_2:54572726-54572745 Msa0077600:intron 35.0%
TACTTCACTACTCCAAGAAT+AGG + chr1_2:54573061-54573080 Msa0077600:CDS 35.0%
TCGCATAAAGCAGATATTGT+GGG + chr1_2:54573170-54573189 Msa0077600:CDS 35.0%
TCATTCCTGCATCAACTAAA+GGG - chr1_2:54573392-54573411 None:intergenic 35.0%
! TGAAAATGTTGCTTCTACCT+TGG + chr1_2:54573475-54573494 Msa0077600:CDS 35.0%
! AATGGGGAATGAAGTATTTC+TGG + chr1_2:54573499-54573518 Msa0077600:CDS 35.0%
! ATGGGGAATGAAGTATTTCT+GGG + chr1_2:54573500-54573519 Msa0077600:CDS 35.0%
AAAAATTGGCACATGAGGAT+GGG - chr1_2:54573782-54573801 None:intergenic 35.0%
ATCTCAAAAATTGGCACATG+AGG - chr1_2:54573787-54573806 None:intergenic 35.0%
!!! ATGTGCCAATTTTTGAGATC+TGG + chr1_2:54573788-54573807 Msa0077600:intron 35.0%
!!! TGTGCCAATTTTTGAGATCT+GGG + chr1_2:54573789-54573808 Msa0077600:intron 35.0%
GCGGTGAAGTTTAATATGAA+AGG - chr1_2:54573895-54573914 None:intergenic 35.0%
AGATTGTTTGGGAGAGATTT+CGG - chr1_2:54574361-54574380 None:intergenic 35.0%
AAGCACTTGTGAGATTGTTT+GGG - chr1_2:54574372-54574391 None:intergenic 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_2:54574373-54574392 None:intergenic 35.0%
!! TCTTGTTGTGAGGATCTTTT+TGG - chr1_2:54574511-54574530 None:intergenic 35.0%
!!! TTGTCCAGATTTTAGGATCT+AGG + chr1_2:54574568-54574587 Msa0077600:intron 35.0%
CAAACCTAGATCCTAAAATC+TGG - chr1_2:54574575-54574594 None:intergenic 35.0%
ATCCAGAAGGAGAATATGTA+AGG + chr1_2:54574595-54574614 Msa0077600:CDS 35.0%
AAGGAGAATATGTAAGGCAA+TGG + chr1_2:54574601-54574620 Msa0077600:CDS 35.0%
TCAAGCCATATTCAAGATGT+GGG + chr1_2:54574770-54574789 Msa0077600:CDS 35.0%
TTAGCTGAAATAGTAGCAGA+CGG - chr1_2:54574903-54574922 None:intergenic 35.0%
TGAAGAGAAGAGAAAGAACA+AGG + chr1_2:54574992-54575011 Msa0077600:CDS 35.0%
! CTTCAAATCTAAAATGGCCA+TGG + chr1_2:54575156-54575175 Msa0077600:intron 35.0%
!! GTCTCGGTTTATTTTCTTCA+TGG - chr1_2:54575314-54575333 None:intergenic 35.0%
ACCGAGACAATTTAATCCTT+AGG + chr1_2:54575326-54575345 Msa0077600:intron 35.0%
!!! GAAGTTGCGTTATTTTTCTC+AGG + chr1_2:54575368-54575387 Msa0077600:intron 35.0%
TCTTCACTCTTTACCATCAT+AGG + chr1_2:54575403-54575422 Msa0077600:intron 35.0%
TGATGTAGAAAGTCCTATGA+TGG - chr1_2:54575419-54575438 None:intergenic 35.0%
CATCACTGTGTTTCATAATG+AGG + chr1_2:54575434-54575453 Msa0077600:intron 35.0%
! TCATGGTGCTTTTACCTTTT+TGG + chr1_2:54575794-54575813 Msa0077600:three_prime_UTR 35.0%
TTGGAACTTGATGCATATGA+AGG + chr1_2:54575813-54575832 Msa0077600:three_prime_UTR 35.0%
GACATGTATACATGCTAGAA+AGG + chr1_2:54575856-54575875 Msa0077600:three_prime_UTR 35.0%
ATTCCTTTATTGAGCCTTGA+TGG + chr1_2:54576029-54576048 Msa0077600:three_prime_UTR 35.0%
TTCCTTTATTGAGCCTTGAT+GGG + chr1_2:54576030-54576049 Msa0077600:three_prime_UTR 35.0%
! CACTACTTTGAAAGAAGTCT+TGG - chr1_2:54576170-54576189 None:intergenic 35.0%
AAAGTAGTGTCCCTATAGAT+TGG + chr1_2:54576181-54576200 Msa0077600:three_prime_UTR 35.0%
!! GTTTACAAAGAAGCTTGCTA+TGG + chr1_2:54576273-54576292 Msa0077600:three_prime_UTR 35.0%
!! AAGCTTGCTATGGAAATTCT+AGG + chr1_2:54576283-54576302 Msa0077600:three_prime_UTR 35.0%
!! AGCTTGCTATGGAAATTCTA+GGG + chr1_2:54576284-54576303 Msa0077600:three_prime_UTR 35.0%
TGTTCACAAGTGTTTATCAC+CGG - chr1_2:54576330-54576349 None:intergenic 35.0%
AGATCACATGTCAAGGAGAA+AGG - chr1_2:54571023-54571042 None:intergenic 40.0%
ACATGCAGTGTATGTAGGAA+TGG - chr1_2:54571113-54571132 None:intergenic 40.0%
GATGCCTTCAAACTTGTGAA+AGG + chr1_2:54571386-54571405 Msa0077600:five_prime_UTR 40.0%
TGTCCCTTTCACAAGTTTGA+AGG - chr1_2:54571393-54571412 None:intergenic 40.0%
AAACTTGTGAAAGGGACATG+TGG + chr1_2:54571395-54571414 Msa0077600:five_prime_UTR 40.0%
AACTTGTGAAAGGGACATGT+GGG + chr1_2:54571396-54571415 Msa0077600:five_prime_UTR 40.0%
GTCCCTTCTAAACCAAACAA+TGG - chr1_2:54571737-54571756 None:intergenic 40.0%
TAGAAGGGACCTTAGAATTG+AGG + chr1_2:54571747-54571766 Msa0077600:CDS 40.0%
CTGGATTGTCCTCAATTCTA+AGG - chr1_2:54571759-54571778 None:intergenic 40.0%
ATATGGTGTCCTAAAGAGGA+AGG + chr1_2:54571823-54571842 Msa0077600:CDS 40.0%
! GAGGAAGGACAATTTTATCC+AGG + chr1_2:54571838-54571857 Msa0077600:CDS 40.0%
! GAAGCAGTCTTTAGTTCACT+TGG + chr1_2:54571882-54571901 Msa0077600:CDS 40.0%
GATCAGTCCTTGAAATCACT+TGG + chr1_2:54571904-54571923 Msa0077600:CDS 40.0%
TCTCGAACCAAGTGATTTCA+AGG - chr1_2:54571914-54571933 None:intergenic 40.0%
AGCACTACTTACCATAGAGA+TGG - chr1_2:54572020-54572039 None:intergenic 40.0%
! CGGCTTGATTCTTCAACTTT+TGG - chr1_2:54572146-54572165 None:intergenic 40.0%
GCAAAATGAAGGGTTCTCAT+CGG - chr1_2:54572230-54572249 None:intergenic 40.0%
TCCAGTAACGTTAAGCGAAA+GGG - chr1_2:54572326-54572345 None:intergenic 40.0%
TTCCAGTAACGTTAAGCGAA+AGG - chr1_2:54572327-54572346 None:intergenic 40.0%
TCAGCAGGAATTAATTGCCA+AGG - chr1_2:54572652-54572671 None:intergenic 40.0%
TGGCAATTAATTCCTGCTGA+AGG + chr1_2:54572652-54572671 Msa0077600:CDS 40.0%
TTAATGTGCATACCTTCAGC+AGG - chr1_2:54572667-54572686 None:intergenic 40.0%
! CTGAAGGTATGCACATTAAC+AGG + chr1_2:54572668-54572687 Msa0077600:intron 40.0%
CCTCTGTCGTAAAACTTCTT+TGG - chr1_2:54572765-54572784 None:intergenic 40.0%
! CCAAAGAAGTTTTACGACAG+AGG + chr1_2:54572762-54572781 Msa0077600:intron 40.0%
! AGAAGTTTTACGACAGAGGT+CGG + chr1_2:54572766-54572785 Msa0077600:intron 40.0%
TCTCTTCTGCTGTGTATTAC+AGG + chr1_2:54572898-54572917 Msa0077600:intron 40.0%
CTACTCCAAGAATAGGCAAA+AGG + chr1_2:54573068-54573087 Msa0077600:CDS 40.0%
TCCAAGAATAGGCAAAAGGT+TGG + chr1_2:54573072-54573091 Msa0077600:CDS 40.0%
! ACCAACCTTTTGCCTATTCT+TGG - chr1_2:54573076-54573095 None:intergenic 40.0%
AAGAATAGGCAAAAGGTTGG+TGG + chr1_2:54573075-54573094 Msa0077600:CDS 40.0%
TTATCCCCGTATCTCCATTT+CGG + chr1_2:54573114-54573133 Msa0077600:CDS 40.0%
AACTCTCCGAAATGGAGATA+CGG - chr1_2:54573123-54573142 None:intergenic 40.0%
CTCGCATAAAGCAGATATTG+TGG + chr1_2:54573169-54573188 Msa0077600:CDS 40.0%
CGCATAAAGCAGATATTGTG+GGG + chr1_2:54573171-54573190 Msa0077600:CDS 40.0%
! GCTCTTTTCCTTAGAGCAAT+TGG + chr1_2:54573228-54573247 Msa0077600:CDS 40.0%
CTCTTAGTCCAATTGCTCTA+AGG - chr1_2:54573239-54573258 None:intergenic 40.0%
!!! GACACTTGAGTTTTTTCCCT+TGG + chr1_2:54573316-54573335 Msa0077600:CDS 40.0%
ATCCGTCAAACTTCAAGACT+TGG + chr1_2:54573346-54573365 Msa0077600:CDS 40.0%
CTCCAAGTCTTGAAGTTTGA+CGG - chr1_2:54573351-54573370 None:intergenic 40.0%
AACTTCAAGACTTGGAGACA+AGG + chr1_2:54573354-54573373 Msa0077600:CDS 40.0%
CTCATTCCTGCATCAACTAA+AGG - chr1_2:54573393-54573412 None:intergenic 40.0%
ATGCAGGAATGAGAGAACTT+TGG + chr1_2:54573400-54573419 Msa0077600:CDS 40.0%
TGCAGGAATGAGAGAACTTT+GGG + chr1_2:54573401-54573420 Msa0077600:CDS 40.0%
! TGTTGCTTCTACCTTGGAAA+TGG + chr1_2:54573481-54573500 Msa0077600:CDS 40.0%
GTTGCTTCTACCTTGGAAAT+GGG + chr1_2:54573482-54573501 Msa0077600:CDS 40.0%
TTGCTTCTACCTTGGAAATG+GGG + chr1_2:54573483-54573502 Msa0077600:CDS 40.0%
TACTTCATTCCCCATTTCCA+AGG - chr1_2:54573495-54573514 None:intergenic 40.0%
GACCTTGAATGTGATATCCT+CGG + chr1_2:54573540-54573559 Msa0077600:CDS 40.0%
AGAAAAACGTGACAAACCTC+AGG - chr1_2:54573624-54573643 None:intergenic 40.0%
CAGAATGTGATGTGTGATAC+AGG - chr1_2:54573712-54573731 None:intergenic 40.0%
CAAAAATTGGCACATGAGGA+TGG - chr1_2:54573783-54573802 None:intergenic 40.0%
ACCACCCAGATCTCAAAAAT+TGG - chr1_2:54573796-54573815 None:intergenic 40.0%
CTTAGATGCATTTCCCTCTT+AGG + chr1_2:54574130-54574149 Msa0077600:intron 40.0%
TATTCAAACAGGGCCTAAGA+GGG - chr1_2:54574146-54574165 None:intergenic 40.0%
TTATTCAAACAGGGCCTAAG+AGG - chr1_2:54574147-54574166 None:intergenic 40.0%
! ACAGCTTTTGGACATGTCAT+AGG + chr1_2:54574329-54574348 Msa0077600:intron 40.0%
AATCTCACTTAGGGACTGTT+TGG - chr1_2:54574425-54574444 None:intergenic 40.0%
AAACAGTCCCTAAGTGAGAT+TGG + chr1_2:54574424-54574443 Msa0077600:intron 40.0%
! CGCTATTTACTCTTGTTGTG+AGG - chr1_2:54574521-54574540 None:intergenic 40.0%
TGCCTTACATATTCTCCTTC+TGG - chr1_2:54574600-54574619 None:intergenic 40.0%
TCTTGAATATGGCTTGAGTC+AGG - chr1_2:54574767-54574786 None:intergenic 40.0%
CTCAAGCCATATTCAAGATG+TGG + chr1_2:54574769-54574788 Msa0077600:CDS 40.0%
TCCAAAAGTTGTCCTCCTTA+AGG + chr1_2:54574869-54574888 Msa0077600:CDS 40.0%
! TCCTTAAGGAGGACAACTTT+TGG - chr1_2:54574873-54574892 None:intergenic 40.0%
! AGCTAATGATCAGAAAGTGC+CGG + chr1_2:54574917-54574936 Msa0077600:CDS 40.0%
TTCTTAGGATCCTGAAATGC+CGG - chr1_2:54574939-54574958 None:intergenic 40.0%
GAAGATGAGGAACATTGTTG+TGG - chr1_2:54575140-54575159 None:intergenic 40.0%
!! AGAGTGTCACAGTTTTTCTC+AGG - chr1_2:54575255-54575274 None:intergenic 40.0%
CAGTGCTCATGGAAAGAAAA+TGG + chr1_2:54575583-54575602 Msa0077600:three_prime_UTR 40.0%
TTCTCACTAGGCATAAGTCA+TGG + chr1_2:54575777-54575796 Msa0077600:three_prime_UTR 40.0%
TTCCCATCAAGGCTCAATAA+AGG - chr1_2:54576035-54576054 None:intergenic 40.0%
CAAGGTTGTTGCTCCAATAA+AGG - chr1_2:54576230-54576249 None:intergenic 40.0%
CTTTATTGGAGCAACAACCT+TGG + chr1_2:54576228-54576247 Msa0077600:three_prime_UTR 40.0%
ATGTAACCTCCTCTGATGAT+GGG + chr1_2:54576251-54576270 Msa0077600:three_prime_UTR 40.0%
CTTTGTAAACCCATCATCAG+AGG - chr1_2:54576263-54576282 None:intergenic 40.0%
GTTCACAAGTGTTTATCACC+GGG - chr1_2:54576329-54576348 None:intergenic 40.0%
!! AAACGTTGGTGATCTTATGC+AGG - chr1_2:54576479-54576498 None:intergenic 40.0%
! GGATCTCTTGTTGTAAACGT+TGG - chr1_2:54576493-54576512 None:intergenic 40.0%
GTGGAGAAGATCACATGTCA+AGG - chr1_2:54571030-54571049 None:intergenic 45.0%
ATCCAGGAAGAGTTTCAAGG+TGG + chr1_2:54571854-54571873 Msa0077600:CDS 45.0%
GAGTACTCTCAATGCTCTCT+TGG + chr1_2:54571954-54571973 Msa0077600:CDS 45.0%
CCAGTAACGTTAAGCGAAAG+GGG - chr1_2:54572325-54572344 None:intergenic 45.0%
GGATCTGTTGTATGAGCCTT+GGG + chr1_2:54572531-54572550 Msa0077600:CDS 45.0%
TCTCTGCCAAAAAGGATCGA+AGG - chr1_2:54572590-54572609 None:intergenic 45.0%
TGCAAGCATCTCTGCCAAAA+AGG - chr1_2:54572598-54572617 None:intergenic 45.0%
GAGATGCTTGCACAAGCAAA+TGG + chr1_2:54572606-54572625 Msa0077600:CDS 45.0%
CAAGGTGGAATAAGCGAAAC+AGG - chr1_2:54572634-54572653 None:intergenic 45.0%
CTGTTTCGCTTATTCCACCT+TGG + chr1_2:54572632-54572651 Msa0077600:CDS 45.0%
GCAGGAATTAATTGCCAAGG+TGG - chr1_2:54572649-54572668 None:intergenic 45.0%
AAACCAAGCAACGCGTTACT+AGG + chr1_2:54572973-54572992 Msa0077600:CDS 45.0%
ACTCTCCGAAATGGAGATAC+GGG - chr1_2:54573122-54573141 None:intergenic 45.0%
TCACACTCAACTCTCCGAAA+TGG - chr1_2:54573131-54573150 None:intergenic 45.0%
ATTTCGGAGAGTTGAGTGTG+AGG + chr1_2:54573130-54573149 Msa0077600:CDS 45.0%
CAGATATTGTGGGGAAACGA+AGG + chr1_2:54573180-54573199 Msa0077600:CDS 45.0%
AGTGCTCTCTCATGAGTGAA+CGG - chr1_2:54573291-54573310 None:intergenic 45.0%
!! ACTCATGAGAGAGCACTTCT+TGG + chr1_2:54573294-54573313 Msa0077600:CDS 45.0%
! TTGACGGATCAGCATTCCAA+GGG - chr1_2:54573335-54573354 None:intergenic 45.0%
! TTTGACGGATCAGCATTCCA+AGG - chr1_2:54573336-54573355 None:intergenic 45.0%
TCAAGACTTGGAGACAAGGT+AGG + chr1_2:54573358-54573377 Msa0077600:CDS 45.0%
ATGAGAGAACTTTGGGCTAC+AGG + chr1_2:54573408-54573427 Msa0077600:CDS 45.0%
!!! GTATTTCTGGGACACGCTTT+TGG + chr1_2:54573512-54573531 Msa0077600:CDS 45.0%
AGCCGAGGATATCACATTCA+AGG - chr1_2:54573545-54573564 None:intergenic 45.0%
TTGAATGTGATATCCTCGGC+TGG + chr1_2:54573544-54573563 Msa0077600:CDS 45.0%
ATCTCAGGATGCTTACCAGA+CGG + chr1_2:54573573-54573592 Msa0077600:CDS 45.0%
!!! GCCAATTTTTGAGATCTGGG+TGG + chr1_2:54573792-54573811 Msa0077600:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG + chr1_2:54574379-54574398 Msa0077600:intron 45.0%
CACTTAGGGACTGTTTGGAT+TGG - chr1_2:54574420-54574439 None:intergenic 45.0%
GGATCTAGGTTTGATCCAGA+AGG + chr1_2:54574582-54574601 Msa0077600:CDS 45.0%
ACACTAAGTGGTGCATTCCA+AGG - chr1_2:54574669-54574688 None:intergenic 45.0%
! GATGCTCTAAGCACACTAAG+TGG - chr1_2:54574681-54574700 None:intergenic 45.0%
! CTTAGTGTGCTTAGAGCATC+AGG + chr1_2:54574681-54574700 Msa0077600:CDS 45.0%
CAAGCAGCATCAAAAGCTTC+TGG + chr1_2:54574798-54574817 Msa0077600:CDS 45.0%
!! ACGGAGCTTTTTCCTTAAGG+AGG - chr1_2:54574884-54574903 None:intergenic 45.0%
!! CAGACGGAGCTTTTTCCTTA+AGG - chr1_2:54574887-54574906 None:intergenic 45.0%
CTGTAGAGCAAGTGTCTTCA+TGG - chr1_2:54575064-54575083 None:intergenic 45.0%
ATGTCTGTCTGTTCTTGCCA+TGG - chr1_2:54575176-54575195 None:intergenic 45.0%
ATGGCAAGAACAGACAGACA+TGG + chr1_2:54575175-54575194 Msa0077600:intron 45.0%
CCAATGATGAGTTCCCATCA+AGG - chr1_2:54576046-54576065 None:intergenic 45.0%
CCTTGATGGGAACTCATCAT+TGG + chr1_2:54576043-54576062 Msa0077600:three_prime_UTR 45.0%
GTAGTGTCCCTATAGATTGG+TGG + chr1_2:54576184-54576203 Msa0077600:three_prime_UTR 45.0%
ATCAGAGGAGGTTACATCCA+AGG - chr1_2:54576248-54576267 None:intergenic 45.0%
GATGTAACCTCCTCTGATGA+TGG + chr1_2:54576250-54576269 Msa0077600:three_prime_UTR 45.0%
TGTAAACCCATCATCAGAGG+AGG - chr1_2:54576260-54576279 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+TGG + chr1_2:54576499-54576518 Msa0077600:three_prime_UTR 45.0%
!!! CATGTGGGCTGAGTTGGTTT+TGG + chr1_2:54571411-54571430 Msa0077600:five_prime_UTR 50.0%
CACCACCTTGAAACTCTTCC+TGG - chr1_2:54571859-54571878 None:intergenic 50.0%
CAGGAAGAGTTTCAAGGTGG+TGG + chr1_2:54571857-54571876 Msa0077600:CDS 50.0%
CCCCTTTCGCTTAACGTTAC+TGG + chr1_2:54572322-54572341 Msa0077600:intron 50.0%
TGGTCTCGAACCAGTGAAAC+AGG - chr1_2:54572457-54572476 None:intergenic 50.0%
GGGATCTGTTGTATGAGCCT+TGG + chr1_2:54572530-54572549 Msa0077600:CDS 50.0%
TTGTCAGCATTGCTCCAACC+TGG - chr1_2:54573012-54573031 None:intergenic 50.0%
AGGTTGGAGCAATGCTGACA+AGG + chr1_2:54573011-54573030 Msa0077600:CDS 50.0%
CTCTCCGAAATGGAGATACG+GGG - chr1_2:54573121-54573140 None:intergenic 50.0%
GGAAACGAAGGCAACAGTGT+TGG + chr1_2:54573192-54573211 Msa0077600:CDS 50.0%
ACTTGGAGACAAGGTAGGAC+TGG + chr1_2:54573363-54573382 Msa0077600:CDS 50.0%
! GGCTACCCTTTAGTTGATGC+AGG + chr1_2:54573384-54573403 Msa0077600:CDS 50.0%
GAGAACTTTGGGCTACAGGA+TGG + chr1_2:54573412-54573431 Msa0077600:CDS 50.0%
AAGGCAATGGCTACCTGAGT+TGG + chr1_2:54574614-54574633 Msa0077600:CDS 50.0%
!! GGATGATGGATCCACTCAGT+TGG - chr1_2:54574648-54574667 None:intergenic 50.0%
CTGAGTGGATCCATCATCCT+TGG + chr1_2:54574649-54574668 Msa0077600:CDS 50.0%
GTGGTGCATTCCAAGGATGA+TGG - chr1_2:54574662-54574681 None:intergenic 50.0%
! GGCTTGAGTCAGGTTTTCTC+TGG - chr1_2:54574757-54574776 None:intergenic 50.0%
!! AAGCTTCTGGCTCTGAAGCA+AGG + chr1_2:54574811-54574830 Msa0077600:CDS 50.0%
!! AGCTTCTGGCTCTGAAGCAA+GGG + chr1_2:54574812-54574831 Msa0077600:CDS 50.0%
!! TCAGAAAGTGCCGGCATTTC+AGG + chr1_2:54574926-54574945 Msa0077600:CDS 50.0%
ACAGACATGGAGCAAAGCTC+AGG + chr1_2:54575188-54575207 Msa0077600:intron 50.0%
CAGACATGGAGCAAAGCTCA+GGG + chr1_2:54575189-54575208 Msa0077600:intron 50.0%
GAGCAAAGCTCAGGGAAAGA+TGG + chr1_2:54575197-54575216 Msa0077600:intron 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_2:54576117-54576136 None:intergenic 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_2:54576125-54576144 Msa0077600:three_prime_UTR 50.0%
ACAAGAGATCCATGCAGTGG+AGG + chr1_2:54576502-54576521 Msa0077600:three_prime_UTR 50.0%
CAAGAGATCCATGCAGTGGA+GGG + chr1_2:54576503-54576522 Msa0077600:three_prime_UTR 50.0%
! AAGGGACATGTGGGCTGAGT+TGG + chr1_2:54571405-54571424 Msa0077600:five_prime_UTR 55.0%
AGCACTAGCTGCTGCTGCTA+GGG + chr1_2:54571777-54571796 Msa0077600:CDS 55.0%
CGTCCTAGTAACGCGTTGCT+TGG - chr1_2:54572979-54572998 None:intergenic 55.0%
ACGCGTTACTAGGACGAGCA+TGG + chr1_2:54572983-54573002 Msa0077600:CDS 55.0%
ATACGGGGATAACAGCGAGG+TGG - chr1_2:54573106-54573125 None:intergenic 55.0%
GAGATACGGGGATAACAGCG+AGG - chr1_2:54573109-54573128 None:intergenic 55.0%
CTGAGATATACTGCCAGCCG+AGG - chr1_2:54573560-54573579 None:intergenic 55.0%
CTCGGCTGGCAGTATATCTC+AGG + chr1_2:54573558-54573577 Msa0077600:CDS 55.0%
TGAGCGCTTGGATGATCCTG+AGG + chr1_2:54573605-54573624 Msa0077600:CDS 55.0%
GTTGGCATTCTCGCCAACTC+AGG - chr1_2:54574630-54574649 None:intergenic 55.0%
TGGCGAGAATGCCAACTGAG+TGG + chr1_2:54574634-54574653 Msa0077600:CDS 55.0%
! AGAGCATCAGGAGTCGAGCT+AGG + chr1_2:54574693-54574712 Msa0077600:CDS 55.0%
! CATTTTCATGCAGGGGCGAC+AGG + chr1_2:54575520-54575539 Msa0077600:intron 55.0%
! ATGAGCACTGCAGCTGCTAC+TGG - chr1_2:54575573-54575592 None:intergenic 55.0%
AGTAGCAGCTGCAGTGCTCA+TGG + chr1_2:54575572-54575591 Msa0077600:three_prime_UTR 55.0%
! TCACAGCCTGAAAGGGTGCA+AGG + chr1_2:54576108-54576127 Msa0077600:three_prime_UTR 55.0%
CTAGCAGCAGCAGCTAGTGC+TGG - chr1_2:54571778-54571797 None:intergenic 60.0%
CAGCACTAGCTGCTGCTGCT+AGG + chr1_2:54571776-54571795 Msa0077600:CDS 60.0%
CTAGCTGCTGCTGCTAGGGA+TGG + chr1_2:54571781-54571800 Msa0077600:CDS 60.0%
CTAGGACGAGCATGGTCTCC+AGG + chr1_2:54572991-54573010 Msa0077600:CDS 60.0%
GACGAGCATGGTCTCCAGGT+TGG + chr1_2:54572995-54573014 Msa0077600:CDS 60.0%
TTTCATGCAGGGGCGACAGG+AGG + chr1_2:54575523-54575542 Msa0077600:intron 60.0%
GTCGATGTCCCTCCACTGCA+TGG - chr1_2:54576514-54576533 None:intergenic 60.0%
CGCTCAAGCTCGTGACCGTC+TGG - chr1_2:54573591-54573610 None:intergenic 65.0%
CGGTCACGAGCTTGAGCGCT+TGG + chr1_2:54573593-54573612 Msa0077600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54571013 54576533 54571013 ID=Msa0077600;Name=Msa0077600
chr1_2 mRNA 54571013 54576533 54571013 ID=Msa0077600-mRNA-1;Parent=Msa0077600;Name=Msa0077600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=705|0.8|0.83|1|0.6|0.5|6|873|608
chr1_2 exon 54571013 54572027 54571013 ID=Msa0077600-mRNA-1:exon:16898;Parent=Msa0077600-mRNA-1
chr1_2 exon 54572452 54572673 54572452 ID=Msa0077600-mRNA-1:exon:16899;Parent=Msa0077600-mRNA-1
chr1_2 exon 54572920 54573626 54572920 ID=Msa0077600-mRNA-1:exon:16900;Parent=Msa0077600-mRNA-1
chr1_2 exon 54574576 54575146 54574576 ID=Msa0077600-mRNA-1:exon:16901;Parent=Msa0077600-mRNA-1
chr1_2 exon 54575533 54576368 54575533 ID=Msa0077600-mRNA-1:exon:16902;Parent=Msa0077600-mRNA-1
chr1_2 exon 54576480 54576533 54576480 ID=Msa0077600-mRNA-1:exon:16903;Parent=Msa0077600-mRNA-1
chr1_2 five_prime_UTR 54571013 54571717 54571013 ID=Msa0077600-mRNA-1:five_prime_utr;Parent=Msa0077600-mRNA-1
chr1_2 CDS 54571718 54572027 54571718 ID=Msa0077600-mRNA-1:cds;Parent=Msa0077600-mRNA-1
chr1_2 CDS 54572452 54572673 54572452 ID=Msa0077600-mRNA-1:cds;Parent=Msa0077600-mRNA-1
chr1_2 CDS 54572920 54573626 54572920 ID=Msa0077600-mRNA-1:cds;Parent=Msa0077600-mRNA-1
chr1_2 CDS 54574576 54575146 54574576 ID=Msa0077600-mRNA-1:cds;Parent=Msa0077600-mRNA-1
chr1_2 CDS 54575533 54575549 54575533 ID=Msa0077600-mRNA-1:cds;Parent=Msa0077600-mRNA-1
chr1_2 three_prime_UTR 54575550 54576368 54575550 ID=Msa0077600-mRNA-1:three_prime_utr;Parent=Msa0077600-mRNA-1
chr1_2 three_prime_UTR 54576480 54576533 54576480 ID=Msa0077600-mRNA-1:three_prime_utr;Parent=Msa0077600-mRNA-1
Gene Sequence

>Msa0077600

ATGGGTAGCAATAGAACCATTGTTTGGTTTAGAAGGGACCTTAGAATTGAGGACAATCCAGCACTAGCTGCTGCTGCTAGGGATGGTTCTGTATTCCCTGTGTTTATATGGTGTCCTAAAGAGGAAGGACAATTTTATCCAGGAAGAGTTTCAAGGTGGTGGCTGAAGCAGTCTTTAGTTCACTTGGATCAGTCCTTGAAATCACTTGGTTCGAGACTCGTGTTGATCAAAACTGAGAGTACTCTCAATGCTCTCTTGGATTGTATAAATGCTATTCAAGCTACAAAAGTTGTGTTTAACCATCTCTATGATCCTGTTTCACTGGTTCGAGACCACAACATCAAAGAAAAGCTAGTGGAACTTGGCTTATCAGTGAAAAGCTATAATGGGGATCTGTTGTATGAGCCTTGGGAAGTATATGATGAGAAGGGACATGCTTTTACAACCTTCGATCCTTTTTGGCAGAGATGCTTGCACAAGCAAATGGAACCTGTTTCGCTTATTCCACCTTGGCAATTAATTCCTGCTGAAGGAAAAGTCAAGAAATGTTCAATAGAGGATTTAGGTCTCGAAAATGAATTAGAAAAACCAAGCAACGCGTTACTAGGACGAGCATGGTCTCCAGGTTGGAGCAATGCTGACAAGGCTTTAACAGAATTTATGGACAAGCAGCTACTTCACTACTCCAAGAATAGGCAAAAGGTTGGTGGAGACTCCACCTCGCTGTTATCCCCGTATCTCCATTTCGGAGAGTTGAGTGTGAGGAAAGTTTTTCAAATGGCTCGCATAAAGCAGATATTGTGGGGAAACGAAGGCAACAGTGTTGGAGAAGAAAGTGTAGCTCTTTTCCTTAGAGCAATTGGACTAAGAGAGTACTCGCGTTATCTTTGTTTCAATTTTCCGTTCACTCATGAGAGAGCACTTCTTGGACACTTGAGTTTTTTCCCTTGGAATGCTGATCCGTCAAACTTCAAGACTTGGAGACAAGGTAGGACTGGCTACCCTTTAGTTGATGCAGGAATGAGAGAACTTTGGGCTACAGGATGGATGCATAACCGAATCAGAGTTATAGTTTCAAGTTTTGCTGTGAAAATGTTGCTTCTACCTTGGAAATGGGGAATGAAGTATTTCTGGGACACGCTTTTGGATGCAGACCTTGAATGTGATATCCTCGGCTGGCAGTATATCTCAGGATGCTTACCAGACGGTCACGAGCTTGAGCGCTTGGATGATCCTGAGATTTTAGGATCTAGGTTTGATCCAGAAGGAGAATATGTAAGGCAATGGCTACCTGAGTTGGCGAGAATGCCAACTGAGTGGATCCATCATCCTTGGAATGCACCACTTAGTGTGCTTAGAGCATCAGGAGTCGAGCTAGGTCAAAACTATCCGAATCCAATAATTGATATAGATATGGCCAGAGAAAACCTGACTCAAGCCATATTCAAGATGTGGGAAATTCAAGCAGCATCAAAAGCTTCTGGCTCTGAAGCAAGGGATGAAGTTGTTGCTGAAAGTGAATATCTAGACATTCCAAAAGTTGTCCTCCTTAAGGAAAAAGCTCCGTCTGCTACTATTTCAGCTAATGATCAGAAAGTGCCGGCATTTCAGGATCCTAAGAATGAACTACCTATTAGGAAGAGAACAAAATGTTTTGAAGAGAAGAGAAAGAACAAGGAAAATTCCGTGAATCATGTGAAAGATAGTAATGTTTCAAGCTCTGACCATGAAGACACTTGCTCTACAGCTGACTCTTCACGTAAGAAGCAGTGTAGTACAAGCACCTATTCATTTTCTGTTCCACAACAATGGGCGACAGGAGGTTGA
Protein sequence

>Msa0077600

MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLVHLDQSLKSLGSRLVLIKTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGLSVKSYNGDLLYEPWEVYDEKGHAFTTFDPFWQRCLHKQMEPVSLIPPWQLIPAEGKVKKCSIEDLGLENELEKPSNALLGRAWSPGWSNADKALTEFMDKQLLHYSKNRQKVGGDSTSLLSPYLHFGELSVRKVFQMARIKQILWGNEGNSVGEESVALFLRAIGLREYSRYLCFNFPFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGSRFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDMARENLTQAIFKMWEIQAASKASGSEARDEVVAESEYLDIPKVVLLKEKAPSATISANDQKVPAFQDPKNELPIRKRTKCFEEKRKNKENSVNHVKDSNVSSSDHEDTCSTADSSRKKQCSTSTYSFSVPQQWATGG*