AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077680 MtrunA17_Chr1g0187801 98.644 590 8 0 1 590 1 590 0.0 1207
Msa0077680 MtrunA17_Chr1g0167721 77.265 585 127 5 4 584 2 584 0.0 934
Msa0077680 MtrunA17_Chr5g0426121 58.813 573 215 5 2 563 5 567 0.0 694
Msa0077680 MtrunA17_Chr4g0003821 28.958 518 321 18 1 493 11 506 1.48e-51 186
Msa0077680 MtrunA17_Chr3g0138841 28.163 490 278 18 2 446 94 554 2.28e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077680 AT1G04400.1 69.340 561 159 4 5 562 6 556 0.0 807
Msa0077680 AT1G04400.2 69.340 561 159 4 5 562 6 556 0.0 807
Msa0077680 AT4G08920.1 59.555 539 207 5 7 536 15 551 0.0 667
Msa0077680 AT3G15620.1 29.735 528 315 17 6 501 26 529 2.83e-53 191
Msa0077680 AT5G24850.1 30.105 475 270 20 2 444 82 526 2.69e-34 138
Msa0077680 AT3G15620.2 29.009 424 249 15 6 397 26 429 8.07e-32 129

Find 226 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTATGTTTCTAAATT+AGG 0.046710 1_2:-54635568 Msa0077680:five_prime_UTR
TCTGATAGCAATTCCTTTAT+TGG 0.107689 1_2:-54630683 Msa0077680:three_prime_UTR
CAAGGCTTTAACAGAATTTA+TGG 0.120110 1_2:-54633868 Msa0077680:CDS
ACTCTTCCTTGCACCCTTTC+AGG 0.148344 1_2:+54630783 None:intergenic
CACAGAAAACAGTTCATTTA+TGG 0.162448 1_2:+54631289 None:intergenic
TAAAATTGTCCTTCCTCTTT+AGG 0.172518 1_2:+54635065 None:intergenic
CAAGACTATCAAAATATTTA+AGG 0.174603 1_2:+54631183 None:intergenic
TCAGAAAGTGCCGGCATTTC+AGG 0.176635 1_2:-54631971 Msa0077680:CDS
TCGTCTACTAGATTAGTTTA+TGG 0.184761 1_2:+54631150 None:intergenic
GCCATATCTATATCAATTAT+TGG 0.201692 1_2:+54632165 None:intergenic
TGCCTTACATATTCTCCTTC+TGG 0.214099 1_2:+54632300 None:intergenic
AATGGGGAATGAAGTATTTC+TGG 0.219485 1_2:-54633398 Msa0077680:CDS
TGGCTATATTCTCAATAAAA+TGG 0.230875 1_2:-54631268 Msa0077680:three_prime_UTR
TCTTATCTAAGTTGAAAATA+AGG 0.233821 1_2:+54635721 None:intergenic
AATTTCCCACATCTTGAATA+TGG 0.234109 1_2:+54632122 None:intergenic
TTTGAAGCCTAGATATAATA+TGG 0.235090 1_2:-54635198 Msa0077680:exon
CTGTATTCCCTGTGTTTATA+TGG 0.246769 1_2:-54635091 Msa0077680:CDS
CTAATAGGTAGTTCATTCTT+AGG 0.252046 1_2:+54631946 None:intergenic
TTAATTATGTTTCTAAATTA+GGG 0.252907 1_2:-54635567 Msa0077680:five_prime_UTR
ATAATGTTATTAACTCAATA+AGG 0.254817 1_2:+54630898 None:intergenic
GTATTTCTGGGACACGCTTT+TGG 0.272715 1_2:-54633385 Msa0077680:CDS
GAACCATTGTTTGGTTTAGA+AGG 0.277961 1_2:-54635166 Msa0077680:CDS
AAGCTTGCTATGGAAATTCT+AGG 0.296623 1_2:-54630614 Msa0077680:three_prime_UTR
AAGAAAATCCACCAATCTAT+AGG 0.299613 1_2:+54630705 None:intergenic
ACTCATGAGAGAGCACTTCT+TGG 0.306648 1_2:-54633603 Msa0077680:CDS
CATGTGGGCTGAGTTGGTTT+TGG 0.306649 1_2:-54635486 Msa0077680:five_prime_UTR
TCCTTAAGGAGGACAACTTT+TGG 0.310889 1_2:+54632027 None:intergenic
CTAAGAATGAACTACCTATT+AGG 0.318143 1_2:-54631945 Msa0077680:CDS
TTGCATACTACTTTGCTATC+TGG 0.318194 1_2:+54635451 None:intergenic
AAATGTTCAATAGAGGATTT+AGG 0.326416 1_2:-54633966 Msa0077680:CDS
CAAGCAGCATCAAAAGCTTC+TGG 0.339324 1_2:-54632099 Msa0077680:CDS
CTCCAAGTCTTGAAGTTTGA+CGG 0.343433 1_2:+54633549 None:intergenic
TATTATACAAAAGGCCTTGA+TGG 0.344194 1_2:+54630758 None:intergenic
TTATCAGTGAAAAGCTATAA+TGG 0.349616 1_2:-54634389 Msa0077680:CDS
TGTTGCTTCTACCTTGGAAA+TGG 0.350799 1_2:-54633416 Msa0077680:CDS
TGCAAGCATCTCTGCCAAAA+AGG 0.354280 1_2:+54634302 None:intergenic
TTGCTACCCATATTATATCT+AGG 0.355825 1_2:+54635191 None:intergenic
TATCAGTGAAAAGCTATAAT+GGG 0.356330 1_2:-54634388 Msa0077680:CDS
CTGTAGAGCAAGTGTCTTCA+TGG 0.357346 1_2:+54631836 None:intergenic
CTGGATTGTCCTCAATTCTA+AGG 0.360401 1_2:+54635141 None:intergenic
ATTCCTTTATTGAGCCTTGA+TGG 0.361770 1_2:-54630868 Msa0077680:three_prime_UTR
TCCAAAAGTTGTCCTCCTTA+AGG 0.363395 1_2:-54632028 Msa0077680:CDS
CTCTTAGTCCAATTGCTCTA+AGG 0.366113 1_2:+54633661 None:intergenic
CAAGGTTGTTGCTCCAATAA+AGG 0.367546 1_2:+54630670 None:intergenic
ATAAGCTATAAGTACTTGTT+AGG 0.370776 1_2:-54635415 Msa0077680:five_prime_UTR
GTTGCTTCTACCTTGGAAAT+GGG 0.372170 1_2:-54633415 Msa0077680:CDS
ATGAGCACTGCAGCTGCTAC+TGG 0.373841 1_2:+54631327 None:intergenic
CACCACCTTGAAACTCTTCC+TGG 0.373919 1_2:+54635041 None:intergenic
TCCAATAATTGATATAGATA+TGG 0.381151 1_2:-54632166 Msa0077680:CDS
AAACCAAGCAACGCGTTACT+AGG 0.385656 1_2:-54633924 Msa0077680:CDS
CAGTGCTCATGGAAAGAAAA+TGG 0.390156 1_2:-54631314 Msa0077680:CDS
TGTATGTAGGAATGGAAGAT+AGG 0.391374 1_2:+54635795 None:intergenic
TGCAGGAATGAGAGAACTTT+GGG 0.399544 1_2:-54633496 Msa0077680:CDS
TCTATATCAATTATTGGATT+CGG 0.400812 1_2:+54632171 None:intergenic
GTTGTGTTTAACCATCTCTA+TGG 0.405567 1_2:-54634891 Msa0077680:intron
ATATGCATCAAGTTCCAAAA+AGG 0.405729 1_2:+54631089 None:intergenic
TTATCCCCGTATCTCCATTT+CGG 0.407052 1_2:-54633783 Msa0077680:CDS
TGGTCTCGAACCAGTGAAAC+AGG 0.407880 1_2:+54634443 None:intergenic
TTCCCATCAAGGCTCAATAA+AGG 0.408230 1_2:+54630865 None:intergenic
AGAAAATCCACCAATCTATA+GGG 0.409775 1_2:+54630706 None:intergenic
CTCATTCCTGCATCAACTAA+AGG 0.411661 1_2:+54633507 None:intergenic
ATAAGTATTAAGAATAAGAT+TGG 0.412388 1_2:+54630818 None:intergenic
CGTCCTAGTAACGCGTTGCT+TGG 0.415085 1_2:+54633921 None:intergenic
CGCTCAAGCTCGTGACCGTC+TGG 0.421155 1_2:+54633309 None:intergenic
ATGAGAGAACTTTGGGCTAC+AGG 0.422513 1_2:-54633489 Msa0077680:CDS
ATATTTAAGGACTTCTCATT+CGG 0.428113 1_2:+54631196 None:intergenic
CTTAGTGTGCTTAGAGCATC+AGG 0.428735 1_2:-54632216 Msa0077680:CDS
CAAGGTGGAATAAGCGAAAC+AGG 0.434780 1_2:+54634266 None:intergenic
TTTATCAGATCCTGTTTCAC+TGG 0.435781 1_2:-54634453 Msa0077680:intron
CTTATCTAAGTTGAAAATAA+GGG 0.436200 1_2:+54635722 None:intergenic
GTAGCAATAGAACCATTGTT+TGG 0.440981 1_2:-54635175 Msa0077680:CDS
TGTCCCTTTCACAAGTTTGA+AGG 0.442030 1_2:+54635507 None:intergenic
CAGCACTAGCTGCTGCTGCT+AGG 0.442114 1_2:-54635121 Msa0077680:CDS
ATGCAGGAATGAGAGAACTT+TGG 0.446720 1_2:-54633497 Msa0077680:CDS
TCTTGAATATGGCTTGAGTC+AGG 0.448589 1_2:+54632133 None:intergenic
CTAGCAGCAGCAGCTAGTGC+TGG 0.448793 1_2:+54635122 None:intergenic
TGAAAATGTTGCTTCTACCT+TGG 0.450718 1_2:-54633422 Msa0077680:CDS
GATGTAACCTCCTCTGATGA+TGG 0.452559 1_2:-54630647 Msa0077680:three_prime_UTR
TCTCGAACCAAGTGATTTCA+AGG 0.453164 1_2:+54634986 None:intergenic
TCACACTCAACTCTCCGAAA+TGG 0.453446 1_2:+54633769 None:intergenic
ACTATCTTTCACATGATTCA+CGG 0.453888 1_2:+54631876 None:intergenic
TAATGTTATTAACTCAATAA+GGG 0.454184 1_2:+54630899 None:intergenic
TTGAAACTATAACTCTGATT+CGG 0.455014 1_2:+54633454 None:intergenic
AAAGTAGTGTCCCTATAGAT+TGG 0.456375 1_2:-54630716 Msa0077680:three_prime_UTR
TTGGAACTTGATGCATATGA+AGG 0.457765 1_2:-54631084 Msa0077680:three_prime_UTR
CACTACTTTGAAAGAAGTCT+TGG 0.464493 1_2:+54630730 None:intergenic
GGCTACCCTTTAGTTGATGC+AGG 0.466577 1_2:-54633513 Msa0077680:CDS
TTGGCACATTATTATACAAA+AGG 0.466771 1_2:+54630749 None:intergenic
TCATTCCTGCATCAACTAAA+GGG 0.470820 1_2:+54633508 None:intergenic
CTGAGTGGATCCATCATCCT+TGG 0.471071 1_2:-54632248 Msa0077680:CDS
CCAAAATCTTATCAAAGAAA+AGG 0.471643 1_2:+54635756 None:intergenic
AGCACTAGCTGCTGCTGCTA+GGG 0.473785 1_2:-54635120 Msa0077680:CDS
GAGATGCTTGCACAAGCAAA+TGG 0.474718 1_2:-54634291 Msa0077680:CDS
CGGTCACGAGCTTGAGCGCT+TGG 0.474915 1_2:-54633304 Msa0077680:CDS
TAGAAGGGACCTTAGAATTG+AGG 0.477865 1_2:-54635150 Msa0077680:CDS
AACTCTCCGAAATGGAGATA+CGG 0.477912 1_2:+54633777 None:intergenic
CTCGGCTGGCAGTATATCTC+AGG 0.480304 1_2:-54633339 Msa0077680:CDS
CCTTGATGGGAACTCATCAT+TGG 0.480346 1_2:-54630854 Msa0077680:three_prime_UTR
CTAGCTGCTGCTGCTAGGGA+TGG 0.482748 1_2:-54635116 Msa0077680:CDS
AAAGAAAAGCTAGTGGAACT+TGG 0.484127 1_2:-54634413 Msa0077680:CDS
ATCCGTCAAACTTCAAGACT+TGG 0.488443 1_2:-54633551 Msa0077680:CDS
AGTCAAGAAATGTTCAATAG+AGG 0.489309 1_2:-54633973 Msa0077680:CDS
CTAGGACGAGCATGGTCTCC+AGG 0.489522 1_2:-54633906 Msa0077680:CDS
ACTCTCCGAAATGGAGATAC+GGG 0.489556 1_2:+54633778 None:intergenic
TTCTTAGGATCCTGAAATGC+CGG 0.490558 1_2:+54631961 None:intergenic
GACATGTATACATGCTAGAA+AGG 0.494362 1_2:-54631041 Msa0077680:three_prime_UTR
ATCCAGAAGGAGAATATGTA+AGG 0.496224 1_2:-54632302 Msa0077680:CDS
GATCAGTCCTTGAAATCACT+TGG 0.496518 1_2:-54634993 Msa0077680:CDS
ATGCCTTCAAACTTGTGAAA+GGG 0.496931 1_2:-54635510 Msa0077680:five_prime_UTR
TACTTCACTACTCCAAGAAT+AGG 0.498999 1_2:-54633836 Msa0077680:CDS
GAGTACTCTCAATGCTCTCT+TGG 0.499541 1_2:-54634943 Msa0077680:CDS
AGTAGCAGCTGCAGTGCTCA+TGG 0.499803 1_2:-54631325 Msa0077680:CDS
GGATCTGTTGTATGAGCCTT+GGG 0.500509 1_2:-54634366 Msa0077680:CDS
CTTTATTGGAGCAACAACCT+TGG 0.503468 1_2:-54630669 Msa0077680:three_prime_UTR
TTTATCCAGGAAGAGTTTCA+AGG 0.505143 1_2:-54635046 Msa0077680:CDS
TTGTCAGCATTGCTCCAACC+TGG 0.505947 1_2:+54633888 None:intergenic
AACCATTGTTTGGTTTAGAA+GGG 0.509245 1_2:-54635165 Msa0077680:CDS
AGATCACATGTCAAGGAGAA+AGG 0.510272 1_2:+54635877 None:intergenic
TGAAGAGAAGAGAAAGAACA+AGG 0.511587 1_2:-54631905 Msa0077680:CDS
CTACTCCAAGAATAGGCAAA+AGG 0.511893 1_2:-54633829 Msa0077680:CDS
AAGGGACATGTGGGCTGAGT+TGG 0.512399 1_2:-54635492 Msa0077680:five_prime_UTR
TTCCTTTATTGAGCCTTGAT+GGG 0.513632 1_2:-54630867 Msa0077680:three_prime_UTR
ATTATACAAAAGGCCTTGAT+GGG 0.516458 1_2:+54630759 None:intergenic
AGCCGAGGATATCACATTCA+AGG 0.517876 1_2:+54633355 None:intergenic
AGCTTCTGGCTCTGAAGCAA+GGG 0.519234 1_2:-54632085 Msa0077680:CDS
CAAACTTGAGAACTAAGATA+AGG 0.520144 1_2:+54635657 None:intergenic
ATGGGGAATGAAGTATTTCT+GGG 0.522424 1_2:-54633397 Msa0077680:CDS
GAAGCAGTCTTTAGTTCACT+TGG 0.523042 1_2:-54635015 Msa0077680:CDS
AAGCTTCTGGCTCTGAAGCA+AGG 0.524562 1_2:-54632086 Msa0077680:CDS
TGTTCACAAGTGTTTATCAC+CGG 0.530213 1_2:+54630570 None:intergenic
CAGGAAGAGTTTCAAGGTGG+TGG 0.530377 1_2:-54635040 Msa0077680:CDS
GTCGATGTCCCTCCACTGCA+TGG 0.531062 1_2:+54630386 None:intergenic
GATGCCTTCAAACTTGTGAA+AGG 0.535690 1_2:-54635511 Msa0077680:five_prime_UTR
ACATGCAGTGTATGTAGGAA+TGG 0.537066 1_2:+54635787 None:intergenic
GTTTACAAAGAAGCTTGCTA+TGG 0.539191 1_2:-54630624 Msa0077680:three_prime_UTR
TCGCATAAAGCAGATATTGT+GGG 0.539284 1_2:-54633727 Msa0077680:CDS
GGGATCTGTTGTATGAGCCT+TGG 0.542320 1_2:-54634367 Msa0077680:CDS
ATGTAACCTCCTCTGATGAT+GGG 0.543378 1_2:-54630646 Msa0077680:three_prime_UTR
CTCAAGCCATATTCAAGATG+TGG 0.544153 1_2:-54632128 Msa0077680:CDS
AAGAATAGGCAAAAGGTTGG+TGG 0.546393 1_2:-54633822 Msa0077680:CDS
GACGAGCATGGTCTCCAGGT+TGG 0.548035 1_2:-54633902 Msa0077680:CDS
GTTGGCATTCTCGCCAACTC+AGG 0.548803 1_2:+54632270 None:intergenic
TTGAAGCCTAGATATAATAT+GGG 0.550311 1_2:-54635197 Msa0077680:exon
GTGGTGCATTCCAAGGATGA+TGG 0.551180 1_2:+54632238 None:intergenic
AAGGCAATGGCTACCTGAGT+TGG 0.551193 1_2:-54632283 Msa0077680:CDS
CAATAACATGCAGTGTATGT+AGG 0.551922 1_2:+54635782 None:intergenic
TTGAATGTGATATCCTCGGC+TGG 0.555532 1_2:-54633353 Msa0077680:CDS
AGGTTGGAGCAATGCTGACA+AGG 0.556873 1_2:-54633886 Msa0077680:CDS
TGCTACTGGATTTATAGATA+AGG 0.557884 1_2:+54631341 None:intergenic
TTGGGAAGTATATGATGAGA+AGG 0.559387 1_2:-54634348 Msa0077680:CDS
ACTTGGAGACAAGGTAGGAC+TGG 0.559715 1_2:-54633534 Msa0077680:CDS
TACTTCATTCCCCATTTCCA+AGG 0.559892 1_2:+54633405 None:intergenic
AGAGCATCAGGAGTCGAGCT+AGG 0.561014 1_2:-54632204 Msa0077680:CDS
TTCTCATCATATACTTCCCA+AGG 0.561654 1_2:+54634350 None:intergenic
TGAGCGCTTGGATGATCCTG+AGG 0.562126 1_2:-54633292 Msa0077680:intron
TTAATGTGCATACCTTCAGC+AGG 0.564087 1_2:+54634233 None:intergenic
GGATCTAGGTTTGATCCAGA+AGG 0.564228 1_2:-54632315 Msa0077680:CDS
CTGTTTCGCTTATTCCACCT+TGG 0.564355 1_2:-54634265 Msa0077680:CDS
GCAAGGAAGAGTTCCCATCA+AGG 0.565323 1_2:-54630772 Msa0077680:three_prime_UTR
GTTTATATGGTGTCCTAAAG+AGG 0.569764 1_2:-54635078 Msa0077680:CDS
ACACTAAGTGGTGCATTCCA+AGG 0.571610 1_2:+54632231 None:intergenic
TGGCAATTAATTCCTGCTGA+AGG 0.571990 1_2:-54634245 Msa0077680:intron
TTGCTTCTACCTTGGAAATG+GGG 0.574156 1_2:-54633414 Msa0077680:CDS
GACCTTGAATGTGATATCCT+CGG 0.577392 1_2:-54633357 Msa0077680:CDS
AGCTAATGATCAGAAAGTGC+CGG 0.577971 1_2:-54631980 Msa0077680:CDS
CTCGCATAAAGCAGATATTG+TGG 0.579056 1_2:-54633728 Msa0077680:CDS
CCAATGATGAGTTCCCATCA+AGG 0.579073 1_2:+54630854 None:intergenic
AAACTTGTGAAAGGGACATG+TGG 0.579526 1_2:-54635502 Msa0077680:five_prime_UTR
TCAAGCCATATTCAAGATGT+GGG 0.581508 1_2:-54632127 Msa0077680:CDS
TACATAGTCAAAGTCTACAT+TGG 0.582002 1_2:-54630923 Msa0077680:three_prime_UTR
AGCTTGCTATGGAAATTCTA+GGG 0.582029 1_2:-54630613 Msa0077680:three_prime_UTR
TAGCAAAGTAGTATGCAAGT+TGG 0.582266 1_2:-54635446 Msa0077680:five_prime_UTR
CTTTGTAAACCCATCATCAG+AGG 0.583687 1_2:+54630637 None:intergenic
AAGGAGAATATGTAAGGCAA+TGG 0.584996 1_2:-54632296 Msa0077680:CDS
CAGATATTGTGGGGAAACGA+AGG 0.585311 1_2:-54633717 Msa0077680:CDS
CAAGAGATCCATGCAGTGGA+GGG 0.587364 1_2:-54630394 Msa0077680:three_prime_UTR
GAGAACTTTGGGCTACAGGA+TGG 0.589010 1_2:-54633485 Msa0077680:CDS
GGATGATGGATCCACTCAGT+TGG 0.589489 1_2:+54632252 None:intergenic
TCCAAGAATAGGCAAAAGGT+TGG 0.591255 1_2:-54633825 Msa0077680:CDS
AGTGCTCTCTCATGAGTGAA+CGG 0.592898 1_2:+54633609 None:intergenic
ATCAGAGGAGGTTACATCCA+AGG 0.595406 1_2:+54630652 None:intergenic
TCACAGCCTGAAAGGGTGCA+AGG 0.598339 1_2:-54630789 Msa0077680:three_prime_UTR
AAGTAAATAATATACAATGT+TGG 0.599908 1_2:+54631221 None:intergenic
GATGCTCTAAGCACACTAAG+TGG 0.600085 1_2:+54632219 None:intergenic
GGAAACGAAGGCAACAGTGT+TGG 0.600244 1_2:-54633705 Msa0077680:CDS
ATACTACTTTGCTATCTGGA+AGG 0.601501 1_2:+54635455 None:intergenic
CTGAGATATACTGCCAGCCG+AGG 0.601742 1_2:+54633340 None:intergenic
GTAGTGTCCCTATAGATTGG+TGG 0.603110 1_2:-54630713 Msa0077680:three_prime_UTR
TTTGACGGATCAGCATTCCA+AGG 0.608296 1_2:+54633564 None:intergenic
TCAAGACTTGGAGACAAGGT+AGG 0.609400 1_2:-54633539 Msa0077680:CDS
TCAGCAGGAATTAATTGCCA+AGG 0.610860 1_2:+54634248 None:intergenic
TTTCATGCAGGGGCGACAGG+AGG 0.611889 1_2:-54631374 Msa0077680:intron
ATATGGTGTCCTAAAGAGGA+AGG 0.616143 1_2:-54635074 Msa0077680:CDS
TTAGGACACCATATAAACAC+AGG 0.616586 1_2:+54635083 None:intergenic
TTGACGGATCAGCATTCCAA+GGG 0.619378 1_2:+54633565 None:intergenic
AACTTCAAGACTTGGAGACA+AGG 0.622090 1_2:-54633543 Msa0077680:CDS
CGCATAAAGCAGATATTGTG+GGG 0.626353 1_2:-54633726 Msa0077680:CDS
AGCACTACTTACCATAGAGA+TGG 0.626546 1_2:+54634880 None:intergenic
CAACATCAAAGAAAAGCTAG+TGG 0.627181 1_2:-54634420 Msa0077680:CDS
ATCTCAGGATGCTTACCAGA+CGG 0.628095 1_2:-54633324 Msa0077680:CDS
TGTAAACCCATCATCAGAGG+AGG 0.632539 1_2:+54630640 None:intergenic
TTCTCACTAGGCATAAGTCA+TGG 0.633959 1_2:-54631120 Msa0077680:three_prime_UTR
ATCAGTGAAAAGCTATAATG+GGG 0.635939 1_2:-54634387 Msa0077680:CDS
GTCCCTTCTAAACCAAACAA+TGG 0.637331 1_2:+54635163 None:intergenic
GTTCACAAGTGTTTATCACC+GGG 0.640346 1_2:+54630571 None:intergenic
TTAAATGTAATCATATATGT+CGG 0.641334 1_2:-54631008 Msa0077680:three_prime_UTR
GGATCTCTTGTTGTAAACGT+TGG 0.641567 1_2:+54630407 None:intergenic
ACGCGTTACTAGGACGAGCA+TGG 0.642349 1_2:-54633914 Msa0077680:CDS
GCAGGAATTAATTGCCAAGG+TGG 0.644364 1_2:+54634251 None:intergenic
AATGTAATCATATATGTCGG+TGG 0.647016 1_2:-54631005 Msa0077680:three_prime_UTR
GTGGAGAAGATCACATGTCA+AGG 0.648414 1_2:+54635870 None:intergenic
ACAAGAGATCCATGCAGTGG+AGG 0.649604 1_2:-54630395 Msa0077680:three_prime_UTR
TTAGCTGAAATAGTAGCAGA+CGG 0.651586 1_2:+54631997 None:intergenic
AACTTGTGAAAGGGACATGT+GGG 0.652408 1_2:-54635501 Msa0077680:five_prime_UTR
TGGGAAGTATATGATGAGAA+GGG 0.652926 1_2:-54634347 Msa0077680:CDS
TGGCGAGAATGCCAACTGAG+TGG 0.660213 1_2:-54632263 Msa0077680:CDS
ATTTCGGAGAGTTGAGTGTG+AGG 0.666895 1_2:-54633767 Msa0077680:CDS
ACAACAAGAGATCCATGCAG+TGG 0.685539 1_2:-54630398 Msa0077680:three_prime_UTR
CTCTCCGAAATGGAGATACG+GGG 0.691586 1_2:+54633779 None:intergenic
ATCCAGGAAGAGTTTCAAGG+TGG 0.698355 1_2:-54635043 Msa0077680:CDS
ATATGATTGAGTGTGTGTGA+AGG 0.700592 1_2:+54635824 None:intergenic
ATACGGGGATAACAGCGAGG+TGG 0.704873 1_2:+54633794 None:intergenic
GACGATAAATTATTCTCACT+AGG 0.709024 1_2:-54631132 Msa0077680:three_prime_UTR
TAGGACACCATATAAACACA+GGG 0.720737 1_2:+54635084 None:intergenic
GAGATACGGGGATAACAGCG+AGG 0.744456 1_2:+54633791 None:intergenic
ATTAGTGTATGATGATCACG+TGG 0.765451 1_2:+54635851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATGTTTCTAAATTA+GGG - chr1_2:54630703-54630722 Msa0077680:three_prime_UTR 10.0%
!! AAAATACACAAAAAAAAATA+TGG + chr1_2:54630733-54630752 None:intergenic 10.0%
!!! GTTAATTATGTTTCTAAATT+AGG - chr1_2:54630702-54630721 Msa0077680:three_prime_UTR 15.0%
!!! TTCATTTATAGTATAGTTTT+TGG - chr1_2:54632076-54632095 Msa0077680:CDS 15.0%
!! TGAATAAATTATTGAATACA+GGG + chr1_2:54633056-54633075 None:intergenic 15.0%
!! TTGAATAAATTATTGAATAC+AGG + chr1_2:54633057-54633076 None:intergenic 15.0%
!! GCTTATAACATATATTAAAA+TGG + chr1_2:54633637-54633656 None:intergenic 15.0%
!! AAGTAAATAATATACAATGT+TGG + chr1_2:54635052-54635071 None:intergenic 15.0%
!! TTAAATGTAATCATATATGT+CGG - chr1_2:54635262-54635281 Msa0077680:five_prime_UTR 15.0%
!! ATAAGTATTAAGAATAAGAT+TGG + chr1_2:54635455-54635474 None:intergenic 15.0%
!!! CTTATCTAAGTTGAAAATAA+GGG + chr1_2:54630551-54630570 None:intergenic 20.0%
!!! TCTTATCTAAGTTGAAAATA+AGG + chr1_2:54630552-54630571 None:intergenic 20.0%
!! AAAATTGATACACTAAAAAC+TGG + chr1_2:54630974-54630993 None:intergenic 20.0%
!!! AAACCATTTTTAAACTTTTG+AGG - chr1_2:54631022-54631041 Msa0077680:three_prime_UTR 20.0%
!!! TTTGGTTACACTTAATATTT+TGG - chr1_2:54631489-54631508 Msa0077680:intron 20.0%
!!! TTTTTCTATTAGTAACATAG+AGG - chr1_2:54631541-54631560 Msa0077680:intron 20.0%
!! TTGTTGTATCATAATAACTA+TGG + chr1_2:54632240-54632259 None:intergenic 20.0%
!!! TAGATAATAGCTTTTATATC+TGG - chr1_2:54633232-54633251 Msa0077680:intron 20.0%
!! TAAAATTTCAAAGTACAAAC+TGG + chr1_2:54633359-54633378 None:intergenic 20.0%
!!! TATAGGAAACAAGTTTTATT+AGG - chr1_2:54633835-54633854 Msa0077680:CDS 20.0%
!! TCTATATCAATTATTGGATT+CGG + chr1_2:54634102-54634121 None:intergenic 20.0%
!! TCCAATAATTGATATAGATA+TGG - chr1_2:54634104-54634123 Msa0077680:intron 20.0%
!!! ATCCTTAGGTTTATTTTTTT+AGG - chr1_2:54634713-54634732 Msa0077680:intron 20.0%
!!! TCCTTAGGTTTATTTTTTTA+GGG - chr1_2:54634714-54634733 Msa0077680:intron 20.0%
!! CAAGACTATCAAAATATTTA+AGG + chr1_2:54635090-54635109 None:intergenic 20.0%
! CCAAAATCTTATCAAAGAAA+AGG + chr1_2:54630517-54630536 None:intergenic 25.0%
!! CCTTTTCTTTGATAAGATTT+TGG - chr1_2:54630514-54630533 Msa0077680:intron 25.0%
! ATAAGCTATAAGTACTTGTT+AGG - chr1_2:54630855-54630874 Msa0077680:three_prime_UTR 25.0%
! TCACCTCAAAAGTTTAAAAA+TGG + chr1_2:54631028-54631047 None:intergenic 25.0%
!! TTTGAAGCCTAGATATAATA+TGG - chr1_2:54631072-54631091 Msa0077680:three_prime_UTR 25.0%
! TTGAAGCCTAGATATAATAT+GGG - chr1_2:54631073-54631092 Msa0077680:three_prime_UTR 25.0%
!!! GATTTGATTTGATTCATGTT+TGG - chr1_2:54631471-54631490 Msa0077680:intron 25.0%
! ATGTTACTAATAGAAAAAGC+CGG + chr1_2:54631539-54631558 None:intergenic 25.0%
! TTATCAGTGAAAAGCTATAA+TGG - chr1_2:54631881-54631900 Msa0077680:CDS 25.0%
! TATCAGTGAAAAGCTATAAT+GGG - chr1_2:54631882-54631901 Msa0077680:CDS 25.0%
!!! TATAGTTTTTGGTTCTACAT+TGG - chr1_2:54632087-54632106 Msa0077680:CDS 25.0%
!! AAAAGATGATACTTTCGTTT+TGG + chr1_2:54632203-54632222 None:intergenic 25.0%
! AAATGTTCAATAGAGGATTT+AGG - chr1_2:54632304-54632323 Msa0077680:CDS 25.0%
! TTGAAACTATAACTCTGATT+CGG + chr1_2:54632819-54632838 None:intergenic 25.0%
! ATAAATTATTGAATACAGGG+TGG + chr1_2:54633053-54633072 None:intergenic 25.0%
! CAAATTAGATATTTAACGAG+CGG + chr1_2:54633287-54633306 None:intergenic 25.0%
!!! TTGCTTTTAACACAGATTAT+TGG - chr1_2:54633304-54633323 Msa0077680:CDS 25.0%
! TAAGTTCGTTTATTCAAACA+GGG + chr1_2:54633529-54633548 None:intergenic 25.0%
!!! GGTATTACTTTTTCGTATAT+AGG - chr1_2:54633818-54633837 Msa0077680:CDS 25.0%
! GCCATATCTATATCAATTAT+TGG + chr1_2:54634108-54634127 None:intergenic 25.0%
! TCCCTAAAAAAATAAACCTA+AGG + chr1_2:54634718-54634737 None:intergenic 25.0%
!! AAGAATTTTCATTTTCATGC+AGG - chr1_2:54634884-54634903 Msa0077680:intron 25.0%
!! AGAATTTTCATTTTCATGCA+GGG - chr1_2:54634885-54634904 Msa0077680:intron 25.0%
! TGGCTATATTCTCAATAAAA+TGG - chr1_2:54635002-54635021 Msa0077680:CDS 25.0%
! ATATTTAAGGACTTCTCATT+CGG + chr1_2:54635077-54635096 None:intergenic 25.0%
!! CATTTTCGTATATGAAGTAT+CGG - chr1_2:54635321-54635340 Msa0077680:five_prime_UTR 25.0%
! TTGGCACATTATTATACAAA+AGG + chr1_2:54635524-54635543 None:intergenic 25.0%
!!! CTATATTTTTGGATAAAACC+CGG - chr1_2:54635681-54635700 Msa0077680:five_prime_UTR 25.0%
CAAACTTGAGAACTAAGATA+AGG + chr1_2:54630616-54630635 None:intergenic 30.0%
TTGCTACCCATATTATATCT+AGG + chr1_2:54631082-54631101 None:intergenic 30.0%
! AACCATTGTTTGGTTTAGAA+GGG - chr1_2:54631105-54631124 Msa0077680:three_prime_UTR 30.0%
TAAAATTGTCCTTCCTCTTT+AGG + chr1_2:54631208-54631227 None:intergenic 30.0%
GTAAAATGCTGGATTCTTAT+TGG - chr1_2:54631634-54631653 Msa0077680:intron 30.0%
GAACTGTAAAGAAACATATC+AGG + chr1_2:54631758-54631777 None:intergenic 30.0%
ACAATCATGGTACAAAATGT+TGG + chr1_2:54631797-54631816 None:intergenic 30.0%
AGGATCTGATAAAACAATCA+TGG + chr1_2:54631810-54631829 None:intergenic 30.0%
ATCAGTGAAAAGCTATAATG+GGG - chr1_2:54631883-54631902 Msa0077680:CDS 30.0%
AGTAAGTTAGTAGTTGTGTT+GGG + chr1_2:54632167-54632186 None:intergenic 30.0%
TAGTAAGTTAGTAGTTGTGT+TGG + chr1_2:54632168-54632187 None:intergenic 30.0%
!! ATGATACTTTCGTTTTGGAT+AGG + chr1_2:54632198-54632217 None:intergenic 30.0%
AGTCAAGAAATGTTCAATAG+AGG - chr1_2:54632297-54632316 Msa0077680:CDS 30.0%
! CAAGGCTTTAACAGAATTTA+TGG - chr1_2:54632402-54632421 Msa0077680:intron 30.0%
!! TGTGAGGAAAGTTTTTCAAA+TGG - chr1_2:54632519-54632538 Msa0077680:intron 30.0%
TCCAATCAACTGCATAAATT+TGG - chr1_2:54633194-54633213 Msa0077680:intron 30.0%
ACCAAATTTATGCAGTTGAT+TGG + chr1_2:54633198-54633217 None:intergenic 30.0%
CAACTATTATAGTCATGCTA+AGG + chr1_2:54633469-54633488 None:intergenic 30.0%
GTAAGTTCGTTTATTCAAAC+AGG + chr1_2:54633530-54633549 None:intergenic 30.0%
!! GCTATTTTCGTAAACTATCT+TGG - chr1_2:54633655-54633674 Msa0077680:CDS 30.0%
AAACTATCTTGGAGATCTTA+TGG - chr1_2:54633666-54633685 Msa0077680:CDS 30.0%
! AATGAACAGATAACAGCTTT+TGG - chr1_2:54633690-54633709 Msa0077680:CDS 30.0%
AGTAATACCAATCTCACTTA+GGG + chr1_2:54633807-54633826 None:intergenic 30.0%
AAGTAATACCAATCTCACTT+AGG + chr1_2:54633808-54633827 None:intergenic 30.0%
!! GTTTTATTAGGTTTGTTCGT+TGG - chr1_2:54633847-54633866 Msa0077680:CDS 30.0%
! TAGCGTGATTTCTCTAATTT+TGG - chr1_2:54633909-54633928 Msa0077680:CDS 30.0%
! TCATTGTTTGTCCAGATTTT+AGG - chr1_2:54633934-54633953 Msa0077680:CDS 30.0%
AATTTCCCACATCTTGAATA+TGG + chr1_2:54634151-54634170 None:intergenic 30.0%
CTAATAGGTAGTTCATTCTT+AGG + chr1_2:54634327-54634346 None:intergenic 30.0%
CTAAGAATGAACTACCTATT+AGG - chr1_2:54634325-54634344 Msa0077680:CDS 30.0%
! CATTTTGTTCTCTTCCTAAT+AGG + chr1_2:54634342-54634361 None:intergenic 30.0%
ACTATCTTTCACATGATTCA+CGG + chr1_2:54634397-54634416 None:intergenic 30.0%
TTGTGGAACAGAAAATGAAT+AGG + chr1_2:54634496-54634515 None:intergenic 30.0%
! CCATTTTAGATTTGAAGATG+AGG + chr1_2:54634526-54634545 None:intergenic 30.0%
CCTCATCTTCAAATCTAAAA+TGG - chr1_2:54634523-54634542 Msa0077680:intron 30.0%
!! AGTTACTTCTATTTTTCTCG+TGG + chr1_2:54634658-54634677 None:intergenic 30.0%
ACCTAAGGATTAAATTGTCT+CGG + chr1_2:54634703-54634722 None:intergenic 30.0%
! AAGAGTGAAGACTCATTTTA+GGG + chr1_2:54634602-54634621 None:intergenic 30.0%
! AAAGAGTGAAGACTCATTTT+AGG + chr1_2:54634768-54634787 None:intergenic 30.0%
ATCACTGTGTTTCATAATGA+GGG - chr1_2:54634808-54634827 Msa0077680:intron 30.0%
!!! CACTCTTTTTTACACTTTGT+TGG - chr1_2:54634841-54634860 Msa0077680:intron 30.0%
! GAATTTTCATTTTCATGCAG+GGG - chr1_2:54634886-54634905 Msa0077680:intron 30.0%
TGCTACTGGATTTATAGATA+AGG + chr1_2:54634932-54634951 None:intergenic 30.0%
CACAGAAAACAGTTCATTTA+TGG + chr1_2:54634984-54635003 None:intergenic 30.0%
! CATAAATGAACTGTTTTCTG+TGG - chr1_2:54634982-54635001 Msa0077680:CDS 30.0%
!! TCGTCTACTAGATTAGTTTA+TGG + chr1_2:54635123-54635142 None:intergenic 30.0%
GACGATAAATTATTCTCACT+AGG - chr1_2:54635138-54635157 Msa0077680:CDS 30.0%
ATATGCATCAAGTTCCAAAA+AGG + chr1_2:54635184-54635203 None:intergenic 30.0%
AATGTAATCATATATGTCGG+TGG - chr1_2:54635265-54635284 Msa0077680:five_prime_UTR 30.0%
TACATAGTCAAAGTCTACAT+TGG - chr1_2:54635347-54635366 Msa0077680:five_prime_UTR 30.0%
!! ATTTTATTTCACAGCCTGAA+AGG - chr1_2:54635473-54635492 Msa0077680:five_prime_UTR 30.0%
!! TTTTATTTCACAGCCTGAAA+GGG - chr1_2:54635474-54635493 Msa0077680:five_prime_UTR 30.0%
ATTATACAAAAGGCCTTGAT+GGG + chr1_2:54635514-54635533 None:intergenic 30.0%
TATTATACAAAAGGCCTTGA+TGG + chr1_2:54635515-54635534 None:intergenic 30.0%
AGAAAATCCACCAATCTATA+GGG + chr1_2:54635567-54635586 None:intergenic 30.0%
AAGAAAATCCACCAATCTAT+AGG + chr1_2:54635568-54635587 None:intergenic 30.0%
TCTGATAGCAATTCCTTTAT+TGG - chr1_2:54635587-54635606 Msa0077680:five_prime_UTR 30.0%
!!! AATTCTAGGGCCTATATTTT+TGG - chr1_2:54635670-54635689 Msa0077680:five_prime_UTR 30.0%
!! CGGGTTTTATCCAAAAATAT+AGG + chr1_2:54635683-54635702 None:intergenic 30.0%
!! TCATTTGTTATAAGCTGCAA+AGG - chr1_2:54635725-54635744 Msa0077680:five_prime_UTR 30.0%
ATTAGTGTATGATGATCACG+TGG + chr1_2:54630422-54630441 None:intergenic 35.0%
ATATGATTGAGTGTGTGTGA+AGG + chr1_2:54630449-54630468 None:intergenic 35.0%
TGTATGTAGGAATGGAAGAT+AGG + chr1_2:54630478-54630497 None:intergenic 35.0%
CAATAACATGCAGTGTATGT+AGG + chr1_2:54630491-54630510 None:intergenic 35.0%
ATGCCTTCAAACTTGTGAAA+GGG - chr1_2:54630760-54630779 Msa0077680:three_prime_UTR 35.0%
! ATACTACTTTGCTATCTGGA+AGG + chr1_2:54630818-54630837 None:intergenic 35.0%
! TTGCATACTACTTTGCTATC+TGG + chr1_2:54630822-54630841 None:intergenic 35.0%
TAGCAAAGTAGTATGCAAGT+TGG - chr1_2:54630824-54630843 Msa0077680:three_prime_UTR 35.0%
! CTATTTTCAGCAGTGATTTG+AGG - chr1_2:54630879-54630898 Msa0077680:three_prime_UTR 35.0%
TAAAAACTGGCTACAAAGGT+TGG + chr1_2:54630961-54630980 None:intergenic 35.0%
ACACTAAAAACTGGCTACAA+AGG + chr1_2:54630965-54630984 None:intergenic 35.0%
GTAGCAATAGAACCATTGTT+TGG - chr1_2:54631095-54631114 Msa0077680:three_prime_UTR 35.0%
! GAACCATTGTTTGGTTTAGA+AGG - chr1_2:54631104-54631123 Msa0077680:three_prime_UTR 35.0%
CTGTATTCCCTGTGTTTATA+TGG - chr1_2:54631179-54631198 Msa0077680:three_prime_UTR 35.0%
TAGGACACCATATAAACACA+GGG + chr1_2:54631189-54631208 None:intergenic 35.0%
TTAGGACACCATATAAACAC+AGG + chr1_2:54631190-54631209 None:intergenic 35.0%
GTTTATATGGTGTCCTAAAG+AGG - chr1_2:54631192-54631211 Msa0077680:three_prime_UTR 35.0%
TTTATCCAGGAAGAGTTTCA+AGG - chr1_2:54631224-54631243 Msa0077680:three_prime_UTR 35.0%
GTTGTGTTTAACCATCTCTA+TGG - chr1_2:54631379-54631398 Msa0077680:intron 35.0%
!! TGGTAAGTAGTGCTGTTTAT+AGG - chr1_2:54631399-54631418 Msa0077680:intron 35.0%
CAAAAGTTGAAGAATCAAGC+CGG - chr1_2:54631517-54631536 Msa0077680:intron 35.0%
GTTATGTGTGGCAAAATGAA+GGG + chr1_2:54631613-54631632 None:intergenic 35.0%
AGTTATGTGTGGCAAAATGA+AGG + chr1_2:54631614-54631633 None:intergenic 35.0%
! CAGCATTTTACAGTTATGTG+TGG + chr1_2:54631625-54631644 None:intergenic 35.0%
CACACATAACTGTAAAATGC+TGG - chr1_2:54631623-54631642 Msa0077680:intron 35.0%
TTTATCAGATCCTGTTTCAC+TGG - chr1_2:54631817-54631836 Msa0077680:CDS 35.0%
!! CTAGCTTTTCTTTGATGTTG+TGG + chr1_2:54631850-54631869 None:intergenic 35.0%
CAACATCAAAGAAAAGCTAG+TGG - chr1_2:54631850-54631869 Msa0077680:CDS 35.0%
AAAGAAAAGCTAGTGGAACT+TGG - chr1_2:54631857-54631876 Msa0077680:CDS 35.0%
TTCTCATCATATACTTCCCA+AGG + chr1_2:54631923-54631942 None:intergenic 35.0%
! TTGGGAAGTATATGATGAGA+AGG - chr1_2:54631922-54631941 Msa0077680:CDS 35.0%
! TGGGAAGTATATGATGAGAA+GGG - chr1_2:54631923-54631942 Msa0077680:CDS 35.0%
! TTACAACCTTCGATCCTTTT+TGG - chr1_2:54631954-54631973 Msa0077680:CDS 35.0%
!! TTCTACATTGGTAGCTTTGT+TGG - chr1_2:54632099-54632118 Msa0077680:CDS 35.0%
TACTTCACTACTCCAAGAAT+AGG - chr1_2:54632434-54632453 Msa0077680:intron 35.0%
TCGCATAAAGCAGATATTGT+GGG - chr1_2:54632543-54632562 Msa0077680:intron 35.0%
TCATTCCTGCATCAACTAAA+GGG + chr1_2:54632765-54632784 None:intergenic 35.0%
! TGAAAATGTTGCTTCTACCT+TGG - chr1_2:54632848-54632867 Msa0077680:intron 35.0%
! AATGGGGAATGAAGTATTTC+TGG - chr1_2:54632872-54632891 Msa0077680:intron 35.0%
! ATGGGGAATGAAGTATTTCT+GGG - chr1_2:54632873-54632892 Msa0077680:intron 35.0%
AAAAATTGGCACATGAGGAT+GGG + chr1_2:54633155-54633174 None:intergenic 35.0%
ATCTCAAAAATTGGCACATG+AGG + chr1_2:54633160-54633179 None:intergenic 35.0%
!!! ATGTGCCAATTTTTGAGATC+TGG - chr1_2:54633161-54633180 Msa0077680:intron 35.0%
!!! TGTGCCAATTTTTGAGATCT+GGG - chr1_2:54633162-54633181 Msa0077680:intron 35.0%
GCGGTGAAGTTTAATATGAA+AGG + chr1_2:54633268-54633287 None:intergenic 35.0%
AGATTGTTTGGGAGAGATTT+CGG + chr1_2:54633734-54633753 None:intergenic 35.0%
AAGCACTTGTGAGATTGTTT+GGG + chr1_2:54633745-54633764 None:intergenic 35.0%
TAAGCACTTGTGAGATTGTT+TGG + chr1_2:54633746-54633765 None:intergenic 35.0%
!! TCTTGTTGTGAGGATCTTTT+TGG + chr1_2:54633884-54633903 None:intergenic 35.0%
!!! TTGTCCAGATTTTAGGATCT+AGG - chr1_2:54633941-54633960 Msa0077680:CDS 35.0%
CAAACCTAGATCCTAAAATC+TGG + chr1_2:54633948-54633967 None:intergenic 35.0%
ATCCAGAAGGAGAATATGTA+AGG - chr1_2:54633968-54633987 Msa0077680:CDS 35.0%
AAGGAGAATATGTAAGGCAA+TGG - chr1_2:54633974-54633993 Msa0077680:CDS 35.0%
TCAAGCCATATTCAAGATGT+GGG - chr1_2:54634143-54634162 Msa0077680:intron 35.0%
TTAGCTGAAATAGTAGCAGA+CGG + chr1_2:54634276-54634295 None:intergenic 35.0%
TGAAGAGAAGAGAAAGAACA+AGG - chr1_2:54634365-54634384 Msa0077680:CDS 35.0%
! CTTCAAATCTAAAATGGCCA+TGG - chr1_2:54634529-54634548 Msa0077680:intron 35.0%
!! GTCTCGGTTTATTTTCTTCA+TGG + chr1_2:54634687-54634706 None:intergenic 35.0%
ACCGAGACAATTTAATCCTT+AGG - chr1_2:54634699-54634718 Msa0077680:intron 35.0%
!!! GAAGTTGCGTTATTTTTCTC+AGG - chr1_2:54634741-54634760 Msa0077680:intron 35.0%
TCTTCACTCTTTACCATCAT+AGG - chr1_2:54634776-54634795 Msa0077680:intron 35.0%
TGATGTAGAAAGTCCTATGA+TGG + chr1_2:54634792-54634811 None:intergenic 35.0%
CATCACTGTGTTTCATAATG+AGG - chr1_2:54634807-54634826 Msa0077680:intron 35.0%
! TCATGGTGCTTTTACCTTTT+TGG - chr1_2:54635167-54635186 Msa0077680:CDS 35.0%
TTGGAACTTGATGCATATGA+AGG - chr1_2:54635186-54635205 Msa0077680:exon 35.0%
GACATGTATACATGCTAGAA+AGG - chr1_2:54635229-54635248 Msa0077680:five_prime_UTR 35.0%
ATTCCTTTATTGAGCCTTGA+TGG - chr1_2:54635402-54635421 Msa0077680:five_prime_UTR 35.0%
TTCCTTTATTGAGCCTTGAT+GGG - chr1_2:54635403-54635422 Msa0077680:five_prime_UTR 35.0%
! CACTACTTTGAAAGAAGTCT+TGG + chr1_2:54635543-54635562 None:intergenic 35.0%
AAAGTAGTGTCCCTATAGAT+TGG - chr1_2:54635554-54635573 Msa0077680:five_prime_UTR 35.0%
!! GTTTACAAAGAAGCTTGCTA+TGG - chr1_2:54635646-54635665 Msa0077680:five_prime_UTR 35.0%
!! AAGCTTGCTATGGAAATTCT+AGG - chr1_2:54635656-54635675 Msa0077680:five_prime_UTR 35.0%
!! AGCTTGCTATGGAAATTCTA+GGG - chr1_2:54635657-54635676 Msa0077680:five_prime_UTR 35.0%
TGTTCACAAGTGTTTATCAC+CGG + chr1_2:54635703-54635722 None:intergenic 35.0%
AGATCACATGTCAAGGAGAA+AGG + chr1_2:54630396-54630415 None:intergenic 40.0%
ACATGCAGTGTATGTAGGAA+TGG + chr1_2:54630486-54630505 None:intergenic 40.0%
GATGCCTTCAAACTTGTGAA+AGG - chr1_2:54630759-54630778 Msa0077680:three_prime_UTR 40.0%
TGTCCCTTTCACAAGTTTGA+AGG + chr1_2:54630766-54630785 None:intergenic 40.0%
AAACTTGTGAAAGGGACATG+TGG - chr1_2:54630768-54630787 Msa0077680:three_prime_UTR 40.0%
AACTTGTGAAAGGGACATGT+GGG - chr1_2:54630769-54630788 Msa0077680:three_prime_UTR 40.0%
GTCCCTTCTAAACCAAACAA+TGG + chr1_2:54631110-54631129 None:intergenic 40.0%
TAGAAGGGACCTTAGAATTG+AGG - chr1_2:54631120-54631139 Msa0077680:three_prime_UTR 40.0%
CTGGATTGTCCTCAATTCTA+AGG + chr1_2:54631132-54631151 None:intergenic 40.0%
ATATGGTGTCCTAAAGAGGA+AGG - chr1_2:54631196-54631215 Msa0077680:three_prime_UTR 40.0%
! GAGGAAGGACAATTTTATCC+AGG - chr1_2:54631211-54631230 Msa0077680:three_prime_UTR 40.0%
! GAAGCAGTCTTTAGTTCACT+TGG - chr1_2:54631255-54631274 Msa0077680:three_prime_UTR 40.0%
GATCAGTCCTTGAAATCACT+TGG - chr1_2:54631277-54631296 Msa0077680:three_prime_UTR 40.0%
TCTCGAACCAAGTGATTTCA+AGG + chr1_2:54631287-54631306 None:intergenic 40.0%
AGCACTACTTACCATAGAGA+TGG + chr1_2:54631393-54631412 None:intergenic 40.0%
! CGGCTTGATTCTTCAACTTT+TGG + chr1_2:54631519-54631538 None:intergenic 40.0%
GCAAAATGAAGGGTTCTCAT+CGG + chr1_2:54631603-54631622 None:intergenic 40.0%
TCCAGTAACGTTAAGCGAAA+GGG + chr1_2:54631699-54631718 None:intergenic 40.0%
TTCCAGTAACGTTAAGCGAA+AGG + chr1_2:54631700-54631719 None:intergenic 40.0%
TCAGCAGGAATTAATTGCCA+AGG + chr1_2:54632025-54632044 None:intergenic 40.0%
TGGCAATTAATTCCTGCTGA+AGG - chr1_2:54632025-54632044 Msa0077680:CDS 40.0%
TTAATGTGCATACCTTCAGC+AGG + chr1_2:54632040-54632059 None:intergenic 40.0%
! CTGAAGGTATGCACATTAAC+AGG - chr1_2:54632041-54632060 Msa0077680:CDS 40.0%
CCTCTGTCGTAAAACTTCTT+TGG + chr1_2:54632138-54632157 None:intergenic 40.0%
! CCAAAGAAGTTTTACGACAG+AGG - chr1_2:54632135-54632154 Msa0077680:CDS 40.0%
! AGAAGTTTTACGACAGAGGT+CGG - chr1_2:54632139-54632158 Msa0077680:CDS 40.0%
TCTCTTCTGCTGTGTATTAC+AGG - chr1_2:54632271-54632290 Msa0077680:CDS 40.0%
CTACTCCAAGAATAGGCAAA+AGG - chr1_2:54632441-54632460 Msa0077680:intron 40.0%
TCCAAGAATAGGCAAAAGGT+TGG - chr1_2:54632445-54632464 Msa0077680:intron 40.0%
! ACCAACCTTTTGCCTATTCT+TGG + chr1_2:54632449-54632468 None:intergenic 40.0%
AAGAATAGGCAAAAGGTTGG+TGG - chr1_2:54632448-54632467 Msa0077680:intron 40.0%
TTATCCCCGTATCTCCATTT+CGG - chr1_2:54632487-54632506 Msa0077680:intron 40.0%
AACTCTCCGAAATGGAGATA+CGG + chr1_2:54632496-54632515 None:intergenic 40.0%
CTCGCATAAAGCAGATATTG+TGG - chr1_2:54632542-54632561 Msa0077680:intron 40.0%
CGCATAAAGCAGATATTGTG+GGG - chr1_2:54632544-54632563 Msa0077680:intron 40.0%
! GCTCTTTTCCTTAGAGCAAT+TGG - chr1_2:54632601-54632620 Msa0077680:intron 40.0%
CTCTTAGTCCAATTGCTCTA+AGG + chr1_2:54632612-54632631 None:intergenic 40.0%
!!! GACACTTGAGTTTTTTCCCT+TGG - chr1_2:54632689-54632708 Msa0077680:intron 40.0%
ATCCGTCAAACTTCAAGACT+TGG - chr1_2:54632719-54632738 Msa0077680:intron 40.0%
CTCCAAGTCTTGAAGTTTGA+CGG + chr1_2:54632724-54632743 None:intergenic 40.0%
AACTTCAAGACTTGGAGACA+AGG - chr1_2:54632727-54632746 Msa0077680:intron 40.0%
CTCATTCCTGCATCAACTAA+AGG + chr1_2:54632766-54632785 None:intergenic 40.0%
ATGCAGGAATGAGAGAACTT+TGG - chr1_2:54632773-54632792 Msa0077680:intron 40.0%
TGCAGGAATGAGAGAACTTT+GGG - chr1_2:54632774-54632793 Msa0077680:intron 40.0%
! TGTTGCTTCTACCTTGGAAA+TGG - chr1_2:54632854-54632873 Msa0077680:intron 40.0%
GTTGCTTCTACCTTGGAAAT+GGG - chr1_2:54632855-54632874 Msa0077680:intron 40.0%
TTGCTTCTACCTTGGAAATG+GGG - chr1_2:54632856-54632875 Msa0077680:intron 40.0%
TACTTCATTCCCCATTTCCA+AGG + chr1_2:54632868-54632887 None:intergenic 40.0%
GACCTTGAATGTGATATCCT+CGG - chr1_2:54632913-54632932 Msa0077680:intron 40.0%
AGAAAAACGTGACAAACCTC+AGG + chr1_2:54632997-54633016 None:intergenic 40.0%
CAGAATGTGATGTGTGATAC+AGG + chr1_2:54633085-54633104 None:intergenic 40.0%
CAAAAATTGGCACATGAGGA+TGG + chr1_2:54633156-54633175 None:intergenic 40.0%
ACCACCCAGATCTCAAAAAT+TGG + chr1_2:54633169-54633188 None:intergenic 40.0%
CTTAGATGCATTTCCCTCTT+AGG - chr1_2:54633503-54633522 Msa0077680:CDS 40.0%
TATTCAAACAGGGCCTAAGA+GGG + chr1_2:54633519-54633538 None:intergenic 40.0%
TTATTCAAACAGGGCCTAAG+AGG + chr1_2:54633520-54633539 None:intergenic 40.0%
! ACAGCTTTTGGACATGTCAT+AGG - chr1_2:54633702-54633721 Msa0077680:CDS 40.0%
AATCTCACTTAGGGACTGTT+TGG + chr1_2:54633798-54633817 None:intergenic 40.0%
AAACAGTCCCTAAGTGAGAT+TGG - chr1_2:54633797-54633816 Msa0077680:CDS 40.0%
! CGCTATTTACTCTTGTTGTG+AGG + chr1_2:54633894-54633913 None:intergenic 40.0%
TGCCTTACATATTCTCCTTC+TGG + chr1_2:54633973-54633992 None:intergenic 40.0%
TCTTGAATATGGCTTGAGTC+AGG + chr1_2:54634140-54634159 None:intergenic 40.0%
CTCAAGCCATATTCAAGATG+TGG - chr1_2:54634142-54634161 Msa0077680:intron 40.0%
TCCAAAAGTTGTCCTCCTTA+AGG - chr1_2:54634242-54634261 Msa0077680:intron 40.0%
! TCCTTAAGGAGGACAACTTT+TGG + chr1_2:54634246-54634265 None:intergenic 40.0%
! AGCTAATGATCAGAAAGTGC+CGG - chr1_2:54634290-54634309 Msa0077680:CDS 40.0%
TTCTTAGGATCCTGAAATGC+CGG + chr1_2:54634312-54634331 None:intergenic 40.0%
GAAGATGAGGAACATTGTTG+TGG + chr1_2:54634513-54634532 None:intergenic 40.0%
!! AGAGTGTCACAGTTTTTCTC+AGG + chr1_2:54634628-54634647 None:intergenic 40.0%
CAGTGCTCATGGAAAGAAAA+TGG - chr1_2:54634956-54634975 Msa0077680:CDS 40.0%
TTCTCACTAGGCATAAGTCA+TGG - chr1_2:54635150-54635169 Msa0077680:CDS 40.0%
TTCCCATCAAGGCTCAATAA+AGG + chr1_2:54635408-54635427 None:intergenic 40.0%
CAAGGTTGTTGCTCCAATAA+AGG + chr1_2:54635603-54635622 None:intergenic 40.0%
CTTTATTGGAGCAACAACCT+TGG - chr1_2:54635601-54635620 Msa0077680:five_prime_UTR 40.0%
ATGTAACCTCCTCTGATGAT+GGG - chr1_2:54635624-54635643 Msa0077680:five_prime_UTR 40.0%
CTTTGTAAACCCATCATCAG+AGG + chr1_2:54635636-54635655 None:intergenic 40.0%
GTTCACAAGTGTTTATCACC+GGG + chr1_2:54635702-54635721 None:intergenic 40.0%
!! AAACGTTGGTGATCTTATGC+AGG + chr1_2:54635852-54635871 None:intergenic 40.0%
! GGATCTCTTGTTGTAAACGT+TGG + chr1_2:54635866-54635885 None:intergenic 40.0%
GTGGAGAAGATCACATGTCA+AGG + chr1_2:54630403-54630422 None:intergenic 45.0%
ATCCAGGAAGAGTTTCAAGG+TGG - chr1_2:54631227-54631246 Msa0077680:three_prime_UTR 45.0%
GAGTACTCTCAATGCTCTCT+TGG - chr1_2:54631327-54631346 Msa0077680:CDS 45.0%
CCAGTAACGTTAAGCGAAAG+GGG + chr1_2:54631698-54631717 None:intergenic 45.0%
GGATCTGTTGTATGAGCCTT+GGG - chr1_2:54631904-54631923 Msa0077680:CDS 45.0%
TCTCTGCCAAAAAGGATCGA+AGG + chr1_2:54631963-54631982 None:intergenic 45.0%
TGCAAGCATCTCTGCCAAAA+AGG + chr1_2:54631971-54631990 None:intergenic 45.0%
GAGATGCTTGCACAAGCAAA+TGG - chr1_2:54631979-54631998 Msa0077680:CDS 45.0%
CAAGGTGGAATAAGCGAAAC+AGG + chr1_2:54632007-54632026 None:intergenic 45.0%
CTGTTTCGCTTATTCCACCT+TGG - chr1_2:54632005-54632024 Msa0077680:CDS 45.0%
GCAGGAATTAATTGCCAAGG+TGG + chr1_2:54632022-54632041 None:intergenic 45.0%
AAACCAAGCAACGCGTTACT+AGG - chr1_2:54632346-54632365 Msa0077680:intron 45.0%
ACTCTCCGAAATGGAGATAC+GGG + chr1_2:54632495-54632514 None:intergenic 45.0%
TCACACTCAACTCTCCGAAA+TGG + chr1_2:54632504-54632523 None:intergenic 45.0%
ATTTCGGAGAGTTGAGTGTG+AGG - chr1_2:54632503-54632522 Msa0077680:intron 45.0%
CAGATATTGTGGGGAAACGA+AGG - chr1_2:54632553-54632572 Msa0077680:intron 45.0%
AGTGCTCTCTCATGAGTGAA+CGG + chr1_2:54632664-54632683 None:intergenic 45.0%
!! ACTCATGAGAGAGCACTTCT+TGG - chr1_2:54632667-54632686 Msa0077680:intron 45.0%
! TTGACGGATCAGCATTCCAA+GGG + chr1_2:54632708-54632727 None:intergenic 45.0%
! TTTGACGGATCAGCATTCCA+AGG + chr1_2:54632709-54632728 None:intergenic 45.0%
TCAAGACTTGGAGACAAGGT+AGG - chr1_2:54632731-54632750 Msa0077680:intron 45.0%
ATGAGAGAACTTTGGGCTAC+AGG - chr1_2:54632781-54632800 Msa0077680:intron 45.0%
!!! GTATTTCTGGGACACGCTTT+TGG - chr1_2:54632885-54632904 Msa0077680:intron 45.0%
AGCCGAGGATATCACATTCA+AGG + chr1_2:54632918-54632937 None:intergenic 45.0%
TTGAATGTGATATCCTCGGC+TGG - chr1_2:54632917-54632936 Msa0077680:intron 45.0%
ATCTCAGGATGCTTACCAGA+CGG - chr1_2:54632946-54632965 Msa0077680:intron 45.0%
!!! GCCAATTTTTGAGATCTGGG+TGG - chr1_2:54633165-54633184 Msa0077680:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - chr1_2:54633752-54633771 Msa0077680:CDS 45.0%
CACTTAGGGACTGTTTGGAT+TGG + chr1_2:54633793-54633812 None:intergenic 45.0%
GGATCTAGGTTTGATCCAGA+AGG - chr1_2:54633955-54633974 Msa0077680:CDS 45.0%
ACACTAAGTGGTGCATTCCA+AGG + chr1_2:54634042-54634061 None:intergenic 45.0%
! GATGCTCTAAGCACACTAAG+TGG + chr1_2:54634054-54634073 None:intergenic 45.0%
! CTTAGTGTGCTTAGAGCATC+AGG - chr1_2:54634054-54634073 Msa0077680:intron 45.0%
CAAGCAGCATCAAAAGCTTC+TGG - chr1_2:54634171-54634190 Msa0077680:intron 45.0%
!! ACGGAGCTTTTTCCTTAAGG+AGG + chr1_2:54634257-54634276 None:intergenic 45.0%
!! CAGACGGAGCTTTTTCCTTA+AGG + chr1_2:54634260-54634279 None:intergenic 45.0%
CTGTAGAGCAAGTGTCTTCA+TGG + chr1_2:54634437-54634456 None:intergenic 45.0%
ATGTCTGTCTGTTCTTGCCA+TGG + chr1_2:54634549-54634568 None:intergenic 45.0%
ATGGCAAGAACAGACAGACA+TGG - chr1_2:54634548-54634567 Msa0077680:intron 45.0%
CCAATGATGAGTTCCCATCA+AGG + chr1_2:54635419-54635438 None:intergenic 45.0%
CCTTGATGGGAACTCATCAT+TGG - chr1_2:54635416-54635435 Msa0077680:five_prime_UTR 45.0%
GTAGTGTCCCTATAGATTGG+TGG - chr1_2:54635557-54635576 Msa0077680:five_prime_UTR 45.0%
ATCAGAGGAGGTTACATCCA+AGG + chr1_2:54635621-54635640 None:intergenic 45.0%
GATGTAACCTCCTCTGATGA+TGG - chr1_2:54635623-54635642 Msa0077680:five_prime_UTR 45.0%
TGTAAACCCATCATCAGAGG+AGG + chr1_2:54635633-54635652 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+TGG - chr1_2:54635872-54635891 Msa0077680:five_prime_UTR 45.0%
!!! CATGTGGGCTGAGTTGGTTT+TGG - chr1_2:54630784-54630803 Msa0077680:three_prime_UTR 50.0%
CACCACCTTGAAACTCTTCC+TGG + chr1_2:54631232-54631251 None:intergenic 50.0%
CAGGAAGAGTTTCAAGGTGG+TGG - chr1_2:54631230-54631249 Msa0077680:three_prime_UTR 50.0%
CCCCTTTCGCTTAACGTTAC+TGG - chr1_2:54631695-54631714 Msa0077680:intron 50.0%
TGGTCTCGAACCAGTGAAAC+AGG + chr1_2:54631830-54631849 None:intergenic 50.0%
GGGATCTGTTGTATGAGCCT+TGG - chr1_2:54631903-54631922 Msa0077680:CDS 50.0%
TTGTCAGCATTGCTCCAACC+TGG + chr1_2:54632385-54632404 None:intergenic 50.0%
AGGTTGGAGCAATGCTGACA+AGG - chr1_2:54632384-54632403 Msa0077680:intron 50.0%
CTCTCCGAAATGGAGATACG+GGG + chr1_2:54632494-54632513 None:intergenic 50.0%
GGAAACGAAGGCAACAGTGT+TGG - chr1_2:54632565-54632584 Msa0077680:intron 50.0%
ACTTGGAGACAAGGTAGGAC+TGG - chr1_2:54632736-54632755 Msa0077680:intron 50.0%
! GGCTACCCTTTAGTTGATGC+AGG - chr1_2:54632757-54632776 Msa0077680:intron 50.0%
GAGAACTTTGGGCTACAGGA+TGG - chr1_2:54632785-54632804 Msa0077680:intron 50.0%
AAGGCAATGGCTACCTGAGT+TGG - chr1_2:54633987-54634006 Msa0077680:intron 50.0%
!! GGATGATGGATCCACTCAGT+TGG + chr1_2:54634021-54634040 None:intergenic 50.0%
CTGAGTGGATCCATCATCCT+TGG - chr1_2:54634022-54634041 Msa0077680:intron 50.0%
GTGGTGCATTCCAAGGATGA+TGG + chr1_2:54634035-54634054 None:intergenic 50.0%
! GGCTTGAGTCAGGTTTTCTC+TGG + chr1_2:54634130-54634149 None:intergenic 50.0%
!! AAGCTTCTGGCTCTGAAGCA+AGG - chr1_2:54634184-54634203 Msa0077680:intron 50.0%
!! AGCTTCTGGCTCTGAAGCAA+GGG - chr1_2:54634185-54634204 Msa0077680:intron 50.0%
!! TCAGAAAGTGCCGGCATTTC+AGG - chr1_2:54634299-54634318 Msa0077680:CDS 50.0%
ACAGACATGGAGCAAAGCTC+AGG - chr1_2:54634561-54634580 Msa0077680:intron 50.0%
CAGACATGGAGCAAAGCTCA+GGG - chr1_2:54634562-54634581 Msa0077680:intron 50.0%
GAGCAAAGCTCAGGGAAAGA+TGG - chr1_2:54634570-54634589 Msa0077680:intron 50.0%
ACTCTTCCTTGCACCCTTTC+AGG + chr1_2:54635490-54635509 None:intergenic 50.0%
GCAAGGAAGAGTTCCCATCA+AGG - chr1_2:54635498-54635517 Msa0077680:five_prime_UTR 50.0%
ACAAGAGATCCATGCAGTGG+AGG - chr1_2:54635875-54635894 Msa0077680:five_prime_UTR 50.0%
CAAGAGATCCATGCAGTGGA+GGG - chr1_2:54635876-54635895 Msa0077680:five_prime_UTR 50.0%
! AAGGGACATGTGGGCTGAGT+TGG - chr1_2:54630778-54630797 Msa0077680:three_prime_UTR 55.0%
AGCACTAGCTGCTGCTGCTA+GGG - chr1_2:54631150-54631169 Msa0077680:three_prime_UTR 55.0%
CGTCCTAGTAACGCGTTGCT+TGG + chr1_2:54632352-54632371 None:intergenic 55.0%
ACGCGTTACTAGGACGAGCA+TGG - chr1_2:54632356-54632375 Msa0077680:intron 55.0%
ATACGGGGATAACAGCGAGG+TGG + chr1_2:54632479-54632498 None:intergenic 55.0%
GAGATACGGGGATAACAGCG+AGG + chr1_2:54632482-54632501 None:intergenic 55.0%
CTGAGATATACTGCCAGCCG+AGG + chr1_2:54632933-54632952 None:intergenic 55.0%
CTCGGCTGGCAGTATATCTC+AGG - chr1_2:54632931-54632950 Msa0077680:intron 55.0%
TGAGCGCTTGGATGATCCTG+AGG - chr1_2:54632978-54632997 Msa0077680:intron 55.0%
GTTGGCATTCTCGCCAACTC+AGG + chr1_2:54634003-54634022 None:intergenic 55.0%
TGGCGAGAATGCCAACTGAG+TGG - chr1_2:54634007-54634026 Msa0077680:intron 55.0%
! AGAGCATCAGGAGTCGAGCT+AGG - chr1_2:54634066-54634085 Msa0077680:intron 55.0%
! CATTTTCATGCAGGGGCGAC+AGG - chr1_2:54634893-54634912 Msa0077680:CDS 55.0%
! ATGAGCACTGCAGCTGCTAC+TGG + chr1_2:54634946-54634965 None:intergenic 55.0%
AGTAGCAGCTGCAGTGCTCA+TGG - chr1_2:54634945-54634964 Msa0077680:CDS 55.0%
! TCACAGCCTGAAAGGGTGCA+AGG - chr1_2:54635481-54635500 Msa0077680:five_prime_UTR 55.0%
CTAGCAGCAGCAGCTAGTGC+TGG + chr1_2:54631151-54631170 None:intergenic 60.0%
CAGCACTAGCTGCTGCTGCT+AGG - chr1_2:54631149-54631168 Msa0077680:three_prime_UTR 60.0%
CTAGCTGCTGCTGCTAGGGA+TGG - chr1_2:54631154-54631173 Msa0077680:three_prime_UTR 60.0%
CTAGGACGAGCATGGTCTCC+AGG - chr1_2:54632364-54632383 Msa0077680:intron 60.0%
GACGAGCATGGTCTCCAGGT+TGG - chr1_2:54632368-54632387 Msa0077680:intron 60.0%
TTTCATGCAGGGGCGACAGG+AGG - chr1_2:54634896-54634915 Msa0077680:CDS 60.0%
GTCGATGTCCCTCCACTGCA+TGG + chr1_2:54635887-54635906 None:intergenic 60.0%
CGCTCAAGCTCGTGACCGTC+TGG + chr1_2:54632964-54632983 None:intergenic 65.0%
CGGTCACGAGCTTGAGCGCT+TGG - chr1_2:54632966-54632985 Msa0077680:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54630386 54635906 54630386 ID=Msa0077680;Name=Msa0077680
chr1_2 mRNA 54630386 54635906 54630386 ID=Msa0077680-mRNA-1;Parent=Msa0077680;Name=Msa0077680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=705|0.8|0.83|1|0.6|0.5|6|805|617
chr1_2 exon 54630386 54630439 54630386 ID=Msa0077680-mRNA-1:exon:16969;Parent=Msa0077680-mRNA-1
chr1_2 exon 54630551 54631386 54630551 ID=Msa0077680-mRNA-1:exon:16968;Parent=Msa0077680-mRNA-1
chr1_2 exon 54631814 54632343 54631814 ID=Msa0077680-mRNA-1:exon:16967;Parent=Msa0077680-mRNA-1
chr1_2 exon 54633293 54633999 54633293 ID=Msa0077680-mRNA-1:exon:16966;Parent=Msa0077680-mRNA-1
chr1_2 exon 54634246 54634467 54634246 ID=Msa0077680-mRNA-1:exon:16965;Parent=Msa0077680-mRNA-1
chr1_2 exon 54634892 54635906 54634892 ID=Msa0077680-mRNA-1:exon:16964;Parent=Msa0077680-mRNA-1
chr1_2 five_prime_UTR 54635202 54635906 54635202 ID=Msa0077680-mRNA-1:five_prime_utr;Parent=Msa0077680-mRNA-1
chr1_2 CDS 54634892 54635201 54634892 ID=Msa0077680-mRNA-1:cds;Parent=Msa0077680-mRNA-1
chr1_2 CDS 54634246 54634467 54634246 ID=Msa0077680-mRNA-1:cds;Parent=Msa0077680-mRNA-1
chr1_2 CDS 54633293 54633999 54633293 ID=Msa0077680-mRNA-1:cds;Parent=Msa0077680-mRNA-1
chr1_2 CDS 54631814 54632343 54631814 ID=Msa0077680-mRNA-1:cds;Parent=Msa0077680-mRNA-1
chr1_2 CDS 54631302 54631386 54631302 ID=Msa0077680-mRNA-1:cds;Parent=Msa0077680-mRNA-1
chr1_2 three_prime_UTR 54630551 54631301 54630551 ID=Msa0077680-mRNA-1:three_prime_utr;Parent=Msa0077680-mRNA-1
chr1_2 three_prime_UTR 54630386 54630439 54630386 ID=Msa0077680-mRNA-1:three_prime_utr;Parent=Msa0077680-mRNA-1
Gene Sequence

>Msa0077680

ATGGGTAGCAATAGAACCATTGTTTGGTTTAGAAGGGACCTTAGAATTGAGGACAATCCAGCACTAGCTGCTGCTGCTAGGGATGGTTCTGTATTCCCTGTGTTTATATGGTGTCCTAAAGAGGAAGGACAATTTTATCCAGGAAGAGTTTCAAGGTGGTGGCTGAAGCAGTCTTTAGTTCACTTGGATCAGTCCTTGAAATCACTTGGTTCGAGACTCGTGTTGATCAAAACTGAGAGTACTCTCAATGCTCTCTTGGATTGTATAAATGCTATTCAAGCTACAAAAGTTGTGTTTAACCATCTCTATGATCCTGTTTCACTGGTTCGAGACCACAACATCAAAGAAAAGCTAGTGGAACTTGGCTTATCAGTGAAAAGCTATAATGGGGATCTGTTGTATGAGCCTTGGGAAGTATATGATGAGAAGGGACATGCTTTTACAACCTTCGATCCTTTTTGGCAGAGATGCTTGCACAAGCAAATGGAACCTGTTTCGCTTATTCCACCTTGGCAATTAATTCCTGCTGAAGGAAAAGTCAAGAAATGTTCAATAGAGGATTTAGGTCTCGAAAATGAATTAGAAAAACCAAGCAACGCGTTACTAGGACGAGCATGGTCTCCAGGTTGGAGCAATGCTGACAAGGCTTTAACAGAATTTATGGACAAGCAGCTACTTCACTACTCCAAGAATAGGCAAAAGGTTGGTGGAGACTCCACCTCGCTGTTATCCCCGTATCTCCATTTCGGAGAGTTGAGTGTGAGGAAAGTTTTTCAAATGGCTCGCATAAAGCAGATATTGTGGGGAAACGAAGGCAACAGTGTTGGAGAAGAAAGTGTAGCTCTTTTCCTTAGAGCAATTGGACTAAGAGAGTACTCGCGTTATCTTTGTTTCAATTTTCCGTTCACTCATGAGAGAGCACTTCTTGGACACTTGAGTTTTTTCCCTTGGAATGCTGATCCGTCAAACTTCAAGACTTGGAGACAAGGTAGGACTGGCTACCCTTTAGTTGATGCAGGAATGAGAGAACTTTGGGCTACAGGATGGATGCATAACCGAATCAGAGTTATAGTTTCAAGTTTTGCTGTGAAAATGTTGCTTCTACCTTGGAAATGGGGAATGAAGTATTTCTGGGACACGCTTTTGGATGCAGACCTTGAATGTGATATCCTCGGCTGGCAGTATATCTCAGGATGCTTACCAGACGGTCACGAGCTTGAGCGCTTGGATGATCCTGAGATTTTAGGATCTAGGTTTGATCCAGAAGGAGAATATGTAAGGCAATGGCTACCTGAGTTGGCGAGAATGCCAACTGAGTGGATCCATCATCCTTGGAATGCACCACTTAGTGTGCTTAGAGCATCAGGAGTCGAGCTAGGTCAAAACTATCCGAATCCAATAATTGATATAGATATGGCCAGAGAAAACCTGACTCAAGCCATATTCAAGATGTGGGAAATTCAAGCAGCATCAAAAGCTTCTGGCTCTGAAGCAAGGGATGAAGTTGTTGCTGAAAGTGAATATCTAGACATTCCAAAAGTTGTCCTCCTTAAGGAAAAAGCTCCGTCTGCTACTATTTCAGCTAATGATCAGAAAGTGCCGGCATTTCAGGATCCTAAGAATGAACTACCTATTAGGAAGAGAACAAAATGTTTTGAAGAGAAGAGAAAGAACAAGGAAAATTCCGTGAATCATGTGAAAGATAGTAATGTTTCAAGCTCTGACCATGAAGACACTTGCTCTACAGCTGACTCTTCACGTAAGAAGCAGGGCGACAGGAGGTTGATGATGTCCTTATCTATAAATCCAGTAGCAGCTGCAGTGCTCATGGAAAGAAAATGGTGCCATAAATGA
Protein sequence

>Msa0077680

MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLVHLDQSLKSLGSRLVLIKTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGLSVKSYNGDLLYEPWEVYDEKGHAFTTFDPFWQRCLHKQMEPVSLIPPWQLIPAEGKVKKCSIEDLGLENELEKPSNALLGRAWSPGWSNADKALTEFMDKQLLHYSKNRQKVGGDSTSLLSPYLHFGELSVRKVFQMARIKQILWGNEGNSVGEESVALFLRAIGLREYSRYLCFNFPFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGSRFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDMARENLTQAIFKMWEIQAASKASGSEARDEVVAESEYLDIPKVVLLKEKAPSATISANDQKVPAFQDPKNELPIRKRTKCFEEKRKNKENSVNHVKDSNVSSSDHEDTCSTADSSRKKQGDRRLMMSLSINPVAAAVLMERKWCHK*