AlfalfaGEDB | Msa1323710

M. sativa cultivar zhongmu-4 / Msa1323710

KEGG: K16280
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009690 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009850 GO:0009867 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0034754 GO:0036211 GO:0042221 GO:0042445 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000070
PFAM: PF07002.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323710	sp\|Q9SAL0\|RGLG4_ARATH	68.975	361	105	2	51	411	48	401	1.81e-178	506

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323710	A0A072TPA7	94.660	412	17	3	1	412	1	407	0.0	781

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1323710	0.807416	5.108988e-50	-8.615850e-47
Msa0030180	Msa1323710	0.811311	7.460049e-51	-8.615850e-47
Msa0032580	Msa1323710	0.806957	6.390962e-50	-8.615850e-47
Msa0044000	Msa1323710	0.811202	7.878772e-51	-8.615850e-47
Msa0047030	Msa1323710	0.809300	2.026073e-50	-8.615850e-47
Msa0063890	Msa1323710	0.852287	5.095491e-61	-8.615850e-47
Msa0077600	Msa1323710	0.815398	9.436524e-52	-8.615850e-47
Msa0077680	Msa1323710	0.816088	6.621751e-52	-8.615850e-47
Msa0089630	Msa1323710	0.808333	3.261358e-50	-8.615850e-47
Msa0090570	Msa1323710	0.815737	7.929329e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323710	MtrunA17_Chr8g0356381	94.660	412	17	3	1	412	1	407	0.0	781
Msa1323710	MtrunA17_Chr2g0309791	75.806	372	80	3	43	412	54	417	0.0	586
Msa1323710	MtrunA17_Chr2g0309781	76.323	359	71	4	54	412	59	403	0.0	563
Msa1323710	MtrunA17_Chr2g0309821	74.925	335	67	5	54	385	53	373	1.56e-179	504
Msa1323710	MtrunA17_Chr6g0488261	78.289	304	59	2	55	358	2	298	2.38e-175	491
Msa1323710	MtrunA17_Chr6g0488251	74.441	313	66	4	100	412	9	307	5.58e-172	483
Msa1323710	MtrunA17_Chr3g0130411	56.145	415	158	6	3	411	42	438	4.09e-160	457
Msa1323710	MtrunA17_Chr6g0458051	55.502	418	145	6	28	410	75	486	2.12e-158	455
Msa1323710	MtrunA17_Chr7g0226791	58.886	377	127	4	53	410	78	445	1.45e-157	451
Msa1323710	MtrunA17_Chr3g0123481	58.247	388	129	6	47	410	92	470	1.63e-155	447

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323710	AT1G79380.1	68.975	361	105	2	51	411	48	401	1.84e-179	506
Msa1323710	AT1G67800.4	58.445	373	137	2	53	410	64	433	4.86e-159	455
Msa1323710	AT1G67800.1	58.445	373	137	2	53	410	64	433	4.86e-159	455
Msa1323710	AT1G67800.3	58.445	373	137	2	53	410	64	433	4.86e-159	455
Msa1323710	AT1G67800.6	58.445	373	137	2	53	410	64	433	4.86e-159	455
Msa1323710	AT1G67800.2	58.445	373	137	2	53	410	84	453	1.91e-158	454
Msa1323710	AT5G14420.3	56.959	388	135	6	47	410	89	468	3.44e-152	439
Msa1323710	AT5G14420.2	56.959	388	135	6	47	410	89	468	3.44e-152	439
Msa1323710	AT5G14420.4	56.959	388	135	6	47	410	89	468	3.44e-152	439
Msa1323710	AT5G14420.1	56.959	388	135	6	47	410	89	468	3.44e-152	439

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Find 116 sgRNAs with CRISPR-Local

Find 764 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAACTAAACAGTTA+TGG	0.455254	8_4:-32313527	None:intergenic
AAACATGCCAGCATCATCCA+TGG	0.567739	8_4:+32324311	Msa1323710:CDS
AAAGCGTGAAGCTGAATATT+CGG	0.355029	8_4:+32313587	Msa1323710:CDS
AAAGGATCACCAATCGCCTA+AGG	0.513958	8_4:+32325356	Msa1323710:CDS
AAATTGTCGAAATCGCGTGC+AGG	0.550617	8_4:-32323847	None:intergenic
AACGGGAAGGGCAAAGAAAA+TGG	0.450053	8_4:+32324230	Msa1323710:CDS
AAGCGTGAAGCTGAATATTC+GGG	0.448185	8_4:+32313588	Msa1323710:CDS
AAGCTTACCATGTGCCCACA+TGG	0.544821	8_4:-32325061	None:intergenic
AAGGATCACCAATCGCCTAA+GGG	0.625121	8_4:+32325357	Msa1323710:CDS
AAGGATTTGGCCTTTGGATG+TGG	0.475086	8_4:+32325037	Msa1323710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAATAAAATGCGTGAAAAA+GGG	-	chr8_4:32313486-32313505	None:intergenic	30.0%
ACCAATAAAATGCGTGAAAA+AGG	-	chr8_4:32313487-32313506	None:intergenic	30.0%
CAACCAAAAAAAGTTATCCA+TGG	-	chr8_4:32313847-32313866	None:intergenic	30.0%
AGTGTTCCAACAATTATTGT+GGG	-	chr8_4:32313962-32313981	None:intergenic	30.0%
TAGTGTTCCAACAATTATTG+TGG	-	chr8_4:32313963-32313982	None:intergenic	30.0%
AAACAAAACGTGTTTGCTTA+AGG	+	chr8_4:32314274-32314293	Msa1323710:intron	30.0%
TAACAAAAAACGAGTGACTT+GGG	-	chr8_4:32314317-32314336	None:intergenic	30.0%
TTACAAACTCTCCCTATAAA+AGG	+	chr8_4:32314334-32314353	Msa1323710:intron	30.0%
ACTTCTCCAAAACATGAATA+TGG	-	chr8_4:32314666-32314685	None:intergenic	30.0%
CGAAACCGTTCAAATTAATA+TGG	-	chr8_4:32314749-32314768	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	32313475	32325722	32313475	ID=Msa1323710;Name=Msa1323710
chr8_4	mRNA	32313475	32325722	32313475	ID=Msa1323710-mRNA-1;Parent=Msa1323710;Name=Msa1323710-mRNA-1;_AED=0.38;_eAED=0.38;_QI=92\|1\|1\|1\|0.9\|0.90\|11\|329\|412
chr8_4	exon	32313475	32313770	32313475	ID=Msa1323710-mRNA-1:exon:10528;Parent=Msa1323710-mRNA-1
chr8_4	exon	32322141	32322225	32322141	ID=Msa1323710-mRNA-1:exon:10529;Parent=Msa1323710-mRNA-1
chr8_4	exon	32322405	32322545	32322405	ID=Msa1323710-mRNA-1:exon:10530;Parent=Msa1323710-mRNA-1
chr8_4	exon	32322662	32322775	32322662	ID=Msa1323710-mRNA-1:exon:10531;Parent=Msa1323710-mRNA-1
chr8_4	exon	32323245	32323342	32323245	ID=Msa1323710-mRNA-1:exon:10532;Parent=Msa1323710-mRNA-1
chr8_4	exon	32323464	32323543	32323464	ID=Msa1323710-mRNA-1:exon:10533;Parent=Msa1323710-mRNA-1
chr8_4	exon	32323768	32323873	32323768	ID=Msa1323710-mRNA-1:exon:10534;Parent=Msa1323710-mRNA-1
chr8_4	exon	32323966	32324093	32323966	ID=Msa1323710-mRNA-1:exon:10535;Parent=Msa1323710-mRNA-1
chr8_4	exon	32324224	32324353	32324224	ID=Msa1323710-mRNA-1:exon:10536;Parent=Msa1323710-mRNA-1
chr8_4	exon	32325010	32325075	32325010	ID=Msa1323710-mRNA-1:exon:10537;Parent=Msa1323710-mRNA-1
chr8_4	exon	32325307	32325722	32325307	ID=Msa1323710-mRNA-1:exon:10538;Parent=Msa1323710-mRNA-1
chr8_4	five_prime_UTR	32313475	32313566	32313475	ID=Msa1323710-mRNA-1:five_prime_utr;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32313567	32313770	32313567	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32322141	32322225	32322141	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32322405	32322545	32322405	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32322662	32322775	32322662	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32323245	32323342	32323245	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32323464	32323543	32323464	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32323768	32323873	32323768	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32323966	32324093	32323966	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32324224	32324353	32324224	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32325010	32325075	32325010	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	CDS	32325307	32325393	32325307	ID=Msa1323710-mRNA-1:cds;Parent=Msa1323710-mRNA-1
chr8_4	three_prime_UTR	32325394	32325722	32325394	ID=Msa1323710-mRNA-1:three_prime_utr;Parent=Msa1323710-mRNA-1

Gene Sequence

>Msa1323710

ATGGGAAACTCGCAGGCGAAAAAGCGTGAAGCTGAATATTCGGGAAATGTTGAAGCGAGAAACAAGTCCACAGTTGTCTCACCGCGATCTAAACAACAAGAAGAAGAAGTGTCTTTCAATATTCAACATCATTATGGTAAGAAGAAGCTCTCTACGAAGGAGAAATATGCTTTAATTCCCGATAATTTTACAACTCTTGAACAGGTTACAAGTGCCTTGAGAAGTGAAGGTTTAGAATCCTCAAATCTTATCCTTGGAATTGATTTTACGAAAAGCAATGAATGGACTGGCAGAAGCTCGTTTAATAATAAAAGCCTGCATTCTATTGGAGATACGCCTAACCCTTATGAGAAAGCCATTTCGATTATTGGCAAGACTTTGGCTCCTTTTGATGACGACAACTTGATTCCTTGTCTTGGCTTTGGTGATGCTACGACTCATGATAGCGAAGTGTTTAGCTTTCATGCTGATGATTCATCTTGCCATGGATTTGAGGAAGTTTTGGCTTGCTATCAAAAAATTGTTCCAAACTTGAGTCTTTCGGGACCAACTTCATATGCACCAGTGATCGAGGCTGCAATAGACATTGTTGAGAAAACTCATGGCCAATTCCATGTGTTGGTTATTGTTGCAGATGGCCAGGTCACAAGATATGGCAACAATGAAGGTGGAAAACTTAGTCCTCAAGAAGAGAAGACAATAAAAGCAATAGTTGATGCCAGTTCATATCCTCTCTCTATTGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGATATGAAAAAGTTTGATGACAAGTTACCTGCACGCGATTTCGACAATTTTCAGTTTGTTAACTTCACTGACATTATGTCTAAGAAAATAAGCCCTTCTGCAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTTATGGAGATACCTTTCCAATATAAAGCAGCCCTTGAGCTTGGATTACTTGGTCGTGCAACGGGAAGGGCAAAGAAAATGGTTCCAAGACCTCCTCCAGCTCCTTATTCTCGACATATGCCACCAGATCATTTTCTGAGAAACATGCCAGCATCATCCATGGATGACCAGCGAAACCAAATGGAATGTGCTATATGTCTGACCAATAAAAAGGATTTGGCCTTTGGATGTGGCCCATGTGGGCACATGACCTGCAGAGATTGTGGATCAAGATTAAGCGATTGTCCGATATGCCGCCAAAGGATCACCAATCGCCTAAGGGTGTTTACGGGATGA

Protein sequence

>Msa1323710

MGNSQAKKREAEYSGNVEARNKSTVVSPRSKQQEEEVSFNIQHHYGKKKLSTKEKYALIPDNFTTLEQVTSALRSEGLESSNLILGIDFTKSNEWTGRSSFNNKSLHSIGDTPNPYEKAISIIGKTLAPFDDDNLIPCLGFGDATTHDSEVFSFHADDSSCHGFEEVLACYQKIVPNLSLSGPTSYAPVIEAAIDIVEKTHGQFHVLVIVADGQVTRYGNNEGGKLSPQEEKTIKAIVDASSYPLSIVLVGVGDGPWEDMKKFDDKLPARDFDNFQFVNFTDIMSKKISPSAKEAAFALAALMEIPFQYKAALELGLLGRATGRAKKMVPRPPPAPYSRHMPPDHFLRNMPASSMDDQRNQMECAICLTNKKDLAFGCGPCGHMTCRDCGSRLSDCPICRQRITNRLRVFTG*