AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050040 MtrunA17_Chr1g0156931 97.230 361 10 0 1 361 1 361 0.0 721
Msa0050040 MtrunA17_Chr3g0142941 71.217 337 96 1 25 360 31 367 0.0 517
Msa0050040 MtrunA17_Chr1g0156891 63.562 365 129 3 1 361 1 365 1.83e-175 492
Msa0050040 MtrunA17_Chr3g0142921 65.084 358 120 3 9 361 1 358 4.07e-175 491
Msa0050040 MtrunA17_Chr1g0156911 62.535 355 132 1 8 361 4 358 4.80e-175 490
Msa0050040 MtrunA17_Chr1g0156901 61.453 358 137 1 4 360 13 370 1.18e-173 487
Msa0050040 MtrunA17_Chr1g0156921 57.102 352 149 2 12 361 13 364 1.83e-157 446
Msa0050040 MtrunA17_Chr8g0371491 57.798 327 136 2 31 355 26 352 7.51e-139 399
Msa0050040 MtrunA17_Chr5g0405821 55.211 355 152 6 4 354 9 360 3.25e-136 392
Msa0050040 MtrunA17_Chr5g0405831 53.390 354 159 4 4 354 9 359 1.40e-132 383
Msa0050040 MtrunA17_Chr8g0371471 52.722 349 160 4 17 361 16 363 1.83e-129 375
Msa0050040 MtrunA17_Chr8g0371481 52.000 350 162 4 17 361 16 364 8.42e-129 373
Msa0050040 MtrunA17_Chr8g0341001 44.152 342 182 5 17 353 10 347 4.49e-99 297
Msa0050040 MtrunA17_Chr2g0283191 41.379 348 191 6 12 348 11 356 2.45e-96 291
Msa0050040 MtrunA17_Chr5g0438621 44.984 309 164 3 39 343 28 334 3.73e-96 290
Msa0050040 MtrunA17_Chr4g0046151 42.902 317 172 3 41 348 36 352 4.92e-96 290
Msa0050040 MtrunA17_Chr5g0438631 43.827 324 177 4 39 358 26 348 2.57e-95 288
Msa0050040 MtrunA17_Chr1g0157001 42.319 345 195 3 14 356 9 351 9.58e-95 287
Msa0050040 MtrunA17_Chr2g0330781 44.479 326 178 3 36 358 26 351 1.01e-94 286
Msa0050040 MtrunA17_Chr5g0432101 42.735 351 190 6 12 354 2 349 2.18e-93 283
Msa0050040 MtrunA17_Chr3g0120861 42.202 327 183 4 39 361 36 360 8.70e-93 281
Msa0050040 MtrunA17_Chr3g0105401 41.104 326 189 3 39 361 26 351 3.69e-92 280
Msa0050040 MtrunA17_Chr2g0320671 39.769 347 201 3 9 353 4 344 5.13e-91 276
Msa0050040 MtrunA17_Chr5g0438641 40.857 350 203 3 14 361 7 354 5.88e-91 276
Msa0050040 MtrunA17_Chr5g0437421 38.957 326 192 2 39 357 30 355 1.36e-84 260
Msa0050040 MtrunA17_Chr4g0027521 37.231 325 189 4 39 353 25 344 2.11e-68 218
Msa0050040 MtrunA17_Chr2g0285061 35.484 310 190 6 39 342 30 335 9.05e-66 212
Msa0050040 MtrunA17_Chr8g0374101 36.061 330 199 6 41 358 37 366 1.66e-64 209
Msa0050040 MtrunA17_Chr3g0086641 34.603 315 199 5 32 342 29 340 1.57e-63 206
Msa0050040 MtrunA17_Chr8g0380041 35.045 331 205 6 18 342 7 333 1.78e-63 206
Msa0050040 MtrunA17_Chr3g0077571 36.893 309 184 7 38 342 27 328 5.57e-63 205
Msa0050040 MtrunA17_Chr4g0017431 32.934 334 216 5 16 344 6 336 9.10e-62 202
Msa0050040 MtrunA17_Chr7g0275011 35.826 321 194 6 41 354 34 349 1.03e-61 202
Msa0050040 MtrunA17_Chr4g0008851 35.110 319 199 6 41 353 32 348 1.51e-61 201
Msa0050040 MtrunA17_Chr1g0182811 34.161 322 200 6 41 354 33 350 4.01e-61 200
Msa0050040 MtrunA17_Chr7g0275021 34.862 327 200 8 41 358 34 356 1.20e-60 199
Msa0050040 MtrunA17_Chr1g0189901 33.123 317 206 5 41 353 31 345 2.22e-59 196
Msa0050040 MtrunA17_Chr7g0274991 34.049 326 203 6 35 353 27 347 3.19e-59 195
Msa0050040 MtrunA17_Chr2g0294301 35.000 320 199 6 31 344 25 341 7.78e-59 194
Msa0050040 MtrunA17_Chr3g0077581 32.659 346 214 9 13 344 4 344 1.59e-58 194
Msa0050040 MtrunA17_Chr3g0099161 34.844 353 219 5 7 352 59 407 2.80e-58 194
Msa0050040 MtrunA17_Chr7g0275001 33.143 350 221 6 9 354 1 341 3.74e-58 192
Msa0050040 MtrunA17_Chr5g0396511 34.219 301 192 4 46 342 51 349 1.25e-57 191
Msa0050040 MtrunA17_Chr6g0457921 34.483 319 196 7 43 353 31 344 6.48e-57 189
Msa0050040 MtrunA17_Chr1g0189891 34.277 318 196 6 41 353 29 338 8.14e-57 189
Msa0050040 MtrunA17_Chr3g0131321 32.853 347 221 7 13 351 6 348 1.22e-56 189
Msa0050040 MtrunA17_Chr1g0189931 34.069 317 203 5 41 353 32 346 2.87e-56 187
Msa0050040 MtrunA17_Chr3g0099151 35.014 357 219 7 5 352 51 403 3.98e-56 189
Msa0050040 MtrunA17_Chr4g0068441 36.335 322 194 7 30 344 24 341 1.71e-55 186
Msa0050040 MtrunA17_Chr2g0294311 34.203 345 204 7 14 344 11 346 3.83e-55 185
Msa0050040 MtrunA17_Chr5g0434621 32.759 348 217 9 19 361 6 341 4.21e-54 181
Msa0050040 MtrunA17_Chr3g0092131 32.492 317 206 6 45 356 27 340 9.96e-54 181
Msa0050040 MtrunA17_Chr7g0215961 32.416 327 193 7 41 357 33 341 2.10e-53 180
Msa0050040 MtrunA17_Chr6g0463261 68.595 121 37 1 94 213 4 124 1.37e-52 170
Msa0050040 MtrunA17_Chr4g0060811 31.861 317 208 6 45 356 31 344 4.40e-52 177
Msa0050040 MtrunA17_Chr3g0099231 33.903 351 213 8 9 352 4 342 6.82e-52 177
Msa0050040 MtrunA17_Chr2g0284921 32.372 312 190 8 39 342 32 330 5.97e-48 166
Msa0050040 MtrunA17_Chr5g0444401 31.790 324 209 5 39 354 26 345 1.33e-47 165
Msa0050040 MtrunA17_Chr4g0027571 38.498 213 127 3 144 353 3 214 6.96e-47 159
Msa0050040 MtrunA17_Chr8g0344941 33.123 317 199 7 41 349 41 352 1.94e-46 162
Msa0050040 MtrunA17_Chr8g0380031 31.118 331 206 8 17 342 63 376 8.12e-45 159
Msa0050040 MtrunA17_Chr3g0085881 31.833 311 191 9 39 344 31 325 1.43e-44 156
Msa0050040 MtrunA17_Chr8g0349341 32.456 342 207 11 18 346 10 340 1.59e-44 157
Msa0050040 MtrunA17_Chr8g0344931 32.416 327 194 9 41 361 37 342 2.01e-44 156
Msa0050040 MtrunA17_Chr2g0301641 31.755 359 221 9 14 358 16 364 3.66e-44 157
Msa0050040 MtrunA17_Chr5g0420811 33.623 345 202 12 9 344 1 327 8.13e-44 154
Msa0050040 MtrunA17_Chr2g0284991 32.143 336 208 10 13 342 8 329 3.07e-43 154
Msa0050040 MtrunA17_Chr8g0349321 31.161 353 220 11 4 346 1 340 8.02e-42 149
Msa0050040 MtrunA17_Chr2g0284951 32.808 317 182 11 39 344 31 327 4.97e-40 145
Msa0050040 MtrunA17_Chr7g0229591 40.000 210 113 4 6 213 5 203 1.36e-38 137
Msa0050040 MtrunA17_Chr7g0229581 44.595 148 81 1 214 360 7 154 4.69e-38 134
Msa0050040 MtrunA17_Chr8g0370981 28.610 374 194 10 40 354 43 402 2.73e-36 136
Msa0050040 MtrunA17_Chr2g0285001 31.132 318 200 12 39 349 31 336 8.29e-36 134
Msa0050040 MtrunA17_Chr8g0349301 30.769 312 187 11 12 311 5 299 2.91e-35 131
Msa0050040 MtrunA17_Chr8g0370951 29.513 349 220 11 9 344 6 341 2.55e-34 129
Msa0050040 MtrunA17_Chr1g0160011 29.863 365 217 14 14 352 15 366 1.86e-33 127
Msa0050040 MtrunA17_Chr8g0349331 28.152 341 191 9 18 346 10 308 2.67e-33 126
Msa0050040 MtrunA17_Chr2g0284941 30.032 313 181 9 39 345 31 311 4.89e-33 126
Msa0050040 MtrunA17_Chr3g0085231 29.882 338 203 11 13 342 11 322 9.30e-33 125
Msa0050040 MtrunA17_Chr6g0469511 51.786 112 54 0 39 150 28 139 4.28e-31 115
Msa0050040 MtrunA17_Chr1g0160031 28.696 345 207 13 36 353 34 366 8.35e-31 120
Msa0050040 MtrunA17_Chr2g0301581 29.863 365 211 14 10 354 6 345 1.14e-30 119
Msa0050040 MtrunA17_Chr3g0104821 27.941 340 208 13 41 354 44 372 1.28e-30 120
Msa0050040 MtrunA17_Chr2g0283481 29.499 339 201 12 41 353 47 373 1.61e-30 120
Msa0050040 MtrunA17_Chr7g0254461 26.816 358 205 12 40 358 42 381 2.32e-30 119
Msa0050040 MtrunA17_Chr0c01g0489581 27.348 362 226 12 9 354 3 343 1.43e-29 116
Msa0050040 MtrunA17_Chr2g0317271 27.500 360 224 12 11 354 5 343 3.37e-29 115
Msa0050040 MtrunA17_Chr2g0301541 30.240 334 191 13 41 354 34 345 6.50e-29 115
Msa0050040 MtrunA17_Chr0c01g0489571 27.348 362 226 12 9 354 3 343 7.11e-29 114
Msa0050040 MtrunA17_Chr2g0317261 27.298 359 226 11 11 354 5 343 7.71e-29 114
Msa0050040 MtrunA17_Chr1g0159991 28.116 345 209 12 36 352 31 364 6.85e-28 112
Msa0050040 MtrunA17_Chr8g0381581 26.271 354 219 11 36 358 35 377 7.69e-28 112
Msa0050040 MtrunA17_Chr2g0283511 29.341 334 202 14 46 354 36 360 1.33e-27 112
Msa0050040 MtrunA17_Chr4g0018571 38.217 157 96 1 203 358 19 175 3.21e-27 105
Msa0050040 MtrunA17_Chr1g0160101 27.202 386 221 17 4 352 9 371 3.51e-27 110
Msa0050040 MtrunA17_Chr3g0112821 27.410 332 212 11 41 354 30 350 3.67e-27 110
Msa0050040 MtrunA17_Chr1g0191461 25.886 367 235 12 18 359 12 366 5.79e-27 109
Msa0050040 MtrunA17_Chr6g0469521 42.149 121 69 1 215 334 32 152 7.92e-27 103
Msa0050040 MtrunA17_Chr7g0273101 27.920 351 205 16 36 353 24 359 9.80e-27 109
Msa0050040 MtrunA17_Chr4g0027561 47.244 127 57 2 6 132 5 121 2.24e-26 102
Msa0050040 MtrunA17_Chr1g0159981 28.161 348 197 14 40 352 45 374 2.81e-26 108
Msa0050040 MtrunA17_Chr6g0450731 26.359 368 236 14 9 358 1 351 4.83e-26 107
Msa0050040 MtrunA17_Chr2g0283501 28.190 337 211 13 41 354 31 359 1.55e-25 105
Msa0050040 MtrunA17_Chr7g0271551 28.443 334 203 14 40 354 34 350 2.30e-25 105
Msa0050040 MtrunA17_Chr6g0450721 27.147 361 232 13 14 359 6 350 3.87e-25 104
Msa0050040 MtrunA17_Chr3g0093031 27.463 335 213 13 41 354 30 355 7.04e-25 103
Msa0050040 MtrunA17_Chr1g0159971 27.666 347 198 12 41 352 47 375 8.38e-25 104
Msa0050040 MtrunA17_Chr8g0370961 26.415 212 150 4 135 344 11 218 9.19e-25 101
Msa0050040 MtrunA17_Chr7g0226941 27.298 359 221 12 24 353 16 363 1.59e-24 103
Msa0050040 MtrunA17_Chr7g0226911 26.835 395 217 17 13 358 3 374 4.55e-24 102
Msa0050040 MtrunA17_Chr1g0198351 26.446 363 228 14 14 361 13 351 2.72e-23 99.4
Msa0050040 MtrunA17_Chr6g0450701 26.166 386 221 16 9 353 1 363 1.72e-22 97.4
Msa0050040 MtrunA17_Chr6g0450711 26.513 347 203 14 40 354 121 447 1.90e-22 98.2
Msa0050040 MtrunA17_Chr4g0057991 25.337 371 239 14 7 354 6 361 1.91e-22 97.4
Msa0050040 MtrunA17_Chr2g0301551 29.825 285 161 11 90 354 36 301 2.19e-22 96.3
Msa0050040 MtrunA17_Chr8g0352901 24.528 371 240 10 9 353 1 357 2.20e-22 97.1
Msa0050040 MtrunA17_Chr4g0027581 35.374 147 72 2 230 353 41 187 2.93e-22 93.6
Msa0050040 MtrunA17_Chr3g0112691 27.746 346 196 16 41 354 30 353 4.63e-22 95.9
Msa0050040 MtrunA17_Chr7g0275291 26.801 347 201 14 41 353 33 360 5.11e-22 96.3
Msa0050040 MtrunA17_Chr1g0178931 24.316 329 221 12 42 361 38 347 1.22e-21 94.7
Msa0050040 MtrunA17_Chr7g0226931 26.575 365 207 15 41 358 38 388 1.85e-21 94.7
Msa0050040 MtrunA17_Chr6g0455661 32.240 183 115 5 168 345 269 447 4.39e-21 94.4
Msa0050040 MtrunA17_Chr6g0455661 40.972 144 73 6 19 155 6 144 2.72e-18 85.9
Msa0050040 MtrunA17_Chr6g0459921 32.240 183 115 5 168 345 158 336 4.96e-21 93.2
Msa0050040 MtrunA17_Chr2g0301571 29.123 285 163 12 90 354 36 301 1.46e-20 90.9
Msa0050040 MtrunA17_Chr5g0440501 27.803 223 145 4 141 351 11 229 1.55e-20 89.7
Msa0050040 MtrunA17_Chr2g0283531 24.931 361 244 13 14 354 5 358 2.25e-20 91.3
Msa0050040 MtrunA17_Chr7g0266061 25.231 325 212 13 39 352 40 344 3.29e-20 90.5
Msa0050040 MtrunA17_Chr3g0096551 25.459 381 228 15 15 354 1 366 3.80e-20 90.9
Msa0050040 MtrunA17_Chr1g0178941 24.189 339 217 12 42 361 41 358 6.86e-20 89.7
Msa0050040 MtrunA17_Chr8g0347751 26.554 354 207 14 41 358 36 372 9.18e-20 89.7
Msa0050040 MtrunA17_Chr1g0189921 48.276 87 44 1 41 127 31 116 1.20e-18 82.0
Msa0050040 MtrunA17_Chr8g0339251 24.927 341 222 12 9 333 1 323 2.06e-18 85.1
Msa0050040 MtrunA17_Chr2g0321991 48.889 90 44 2 39 127 31 119 3.06e-18 80.1
Msa0050040 MtrunA17_Chr3g0104831 26.103 272 166 11 109 354 29 291 2.39e-17 81.6
Msa0050040 MtrunA17_Chr2g0301591 29.730 296 157 13 10 285 6 270 7.36e-17 80.1
Msa0050040 MtrunA17_Chr1g0198381 24.169 331 210 12 42 355 3 309 5.00e-16 77.8
Msa0050040 MtrunA17_Chr5g0432081 50.794 63 30 1 292 354 3 64 1.28e-15 71.2
Msa0050040 MtrunA17_Chr4g0018561 49.367 79 32 2 14 90 7 79 6.21e-14 67.4
Msa0050040 MtrunA17_Chr8g0370971 40.385 104 58 1 40 139 37 140 1.34e-13 68.2
Msa0050040 MtrunA17_Chr1g0189911 28.800 125 87 2 230 353 5 128 4.99e-13 66.2
Msa0050040 MtrunA17_Chr7g0228261 40.909 66 39 0 289 354 10 75 5.92e-13 64.3
Msa0050040 MtrunA17_Chr2g0308201 46.341 82 35 2 13 94 15 87 1.32e-12 63.2
Msa0050040 MtrunA17_Chr3g0104801 33.099 142 82 5 41 175 44 179 1.41e-12 65.5
Msa0050040 MtrunA17_Chr2g0301561 29.907 214 123 9 90 285 36 240 9.59e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050040 AT1G75900.1 60.519 347 134 2 18 361 18 364 2.66e-158 449
Msa0050040 AT1G75880.2 56.022 357 155 2 6 360 17 373 4.09e-145 416
Msa0050040 AT1G75880.1 55.866 358 155 3 6 360 17 374 2.93e-143 411
Msa0050040 AT1G75890.2 52.925 359 166 3 2 357 8 366 3.59e-141 405
Msa0050040 AT1G75890.3 52.925 359 166 3 2 357 37 395 5.99e-141 405
Msa0050040 AT5G42170.1 56.418 335 143 2 28 361 37 369 2.21e-140 403
Msa0050040 AT1G75890.1 51.075 372 166 4 2 357 8 379 1.14e-137 397
Msa0050040 AT3G14820.1 52.326 344 160 3 14 356 5 345 6.84e-127 368
Msa0050040 AT1G59406.1 54.128 327 145 4 36 360 25 348 2.34e-126 367
Msa0050040 AT1G59030.1 54.128 327 145 4 36 360 25 348 2.34e-126 367
Msa0050040 AT1G58725.1 54.128 327 145 4 36 360 25 348 2.34e-126 367
Msa0050040 AT1G20120.1 54.206 321 145 2 36 354 73 393 3.83e-125 366
Msa0050040 AT1G20132.1 53.517 327 150 2 36 360 56 382 1.12e-121 356
Msa0050040 AT1G58520.3 51.807 332 148 5 31 360 20 341 4.62e-117 343
Msa0050040 AT1G58525.1 51.807 332 148 5 31 360 20 341 4.62e-117 343
Msa0050040 AT3G43570.1 49.547 331 135 4 31 360 20 319 3.00e-114 335
Msa0050040 AT2G04570.1 43.235 340 183 4 30 361 13 350 3.14e-99 298
Msa0050040 AT1G20130.2 45.104 337 170 4 36 360 179 512 6.14e-96 295
Msa0050040 AT1G20130.1 45.104 337 170 4 36 360 199 532 1.67e-95 294
Msa0050040 AT3G43550.1 52.963 270 123 3 31 299 20 286 1.90e-95 286
Msa0050040 AT5G63170.1 48.710 310 143 5 39 345 26 322 3.83e-95 287
Msa0050040 AT5G03810.1 45.912 318 169 3 39 353 28 345 4.65e-95 287
Msa0050040 AT1G73610.1 43.902 328 167 5 36 360 30 343 2.65e-93 283
Msa0050040 AT5G45960.1 42.857 329 182 3 38 360 44 372 7.70e-93 282
Msa0050040 AT1G06990.1 41.975 324 185 2 40 360 36 359 1.45e-92 281
Msa0050040 AT3G16370.1 43.385 325 181 3 39 360 28 352 2.38e-92 280
Msa0050040 AT5G22810.1 41.279 344 197 3 15 353 8 351 6.89e-92 280
Msa0050040 AT2G30310.1 44.000 325 175 5 40 357 33 357 3.50e-91 278
Msa0050040 AT2G40250.1 42.683 328 180 3 35 355 30 356 3.05e-90 275
Msa0050040 AT2G31540.1 42.486 346 192 5 4 345 1 343 2.52e-89 273
Msa0050040 AT5G03820.1 44.201 319 174 3 39 353 31 349 6.72e-89 272
Msa0050040 AT4G26790.1 40.841 333 194 3 31 360 18 350 9.29e-89 271
Msa0050040 AT4G26790.2 40.841 333 194 3 31 360 18 350 9.29e-89 271
Msa0050040 AT5G03820.2 44.201 319 174 3 39 353 59 377 1.92e-88 271
Msa0050040 AT2G30220.1 44.000 325 175 5 40 357 32 356 2.03e-88 270
Msa0050040 AT2G42990.1 41.745 321 181 3 39 355 26 344 3.06e-88 270
Msa0050040 AT1G58430.1 42.462 325 180 4 40 357 34 358 3.30e-86 265
Msa0050040 AT1G23500.1 44.860 321 163 4 36 354 30 338 4.50e-86 264
Msa0050040 AT2G24560.1 40.503 358 205 6 9 358 1 358 2.02e-85 263
Msa0050040 AT3G53100.1 39.710 345 197 4 18 358 11 348 3.88e-84 259
Msa0050040 AT1G20135.1 40.127 314 174 5 38 349 26 327 7.63e-79 245
Msa0050040 AT1G75920.2 40.683 322 179 4 36 354 24 336 2.73e-78 244
Msa0050040 AT5G45950.1 37.538 333 198 6 30 357 29 356 1.04e-74 235
Msa0050040 AT1G75920.1 38.872 337 179 5 36 354 19 346 3.45e-74 234
Msa0050040 AT1G75910.1 39.009 323 184 5 36 354 23 336 5.40e-71 225
Msa0050040 AT4G28780.1 33.237 346 226 4 11 353 2 345 3.04e-66 214
Msa0050040 AT3G50400.1 35.043 351 218 6 13 353 6 356 6.15e-66 213
Msa0050040 AT1G29670.1 35.777 341 203 11 12 344 3 335 3.00e-65 211
Msa0050040 AT5G08460.1 33.524 349 221 5 1 342 12 356 3.83e-65 211
Msa0050040 AT1G75920.4 38.567 293 168 4 65 354 25 308 1.01e-64 208
Msa0050040 AT1G29670.2 35.777 341 203 11 12 344 71 403 2.03e-64 211
Msa0050040 AT5G45670.1 35.897 312 190 6 39 344 27 334 2.19e-64 209
Msa0050040 AT4G18970.1 36.538 312 188 6 39 344 26 333 1.15e-63 207
Msa0050040 AT4G18970.2 36.538 312 188 6 39 344 26 333 4.30e-63 207
Msa0050040 AT5G33370.1 35.671 328 199 6 33 353 22 344 1.99e-62 204
Msa0050040 AT2G24560.2 39.865 296 173 5 9 299 1 296 5.92e-62 201
Msa0050040 AT2G23540.1 33.427 356 219 7 5 344 7 360 1.57e-61 202
Msa0050040 AT1G75930.1 38.994 318 174 8 36 346 24 328 1.12e-60 199
Msa0050040 AT1G75920.3 34.557 327 171 5 31 354 19 305 1.15e-60 197
Msa0050040 AT1G71691.2 36.218 312 183 8 39 343 53 355 1.49e-60 199
Msa0050040 AT1G33811.1 33.143 350 207 11 14 344 3 344 1.92e-60 199
Msa0050040 AT5G55050.1 37.386 329 189 8 37 353 35 358 2.70e-60 199
Msa0050040 AT4G10950.2 33.754 317 206 3 39 352 69 384 4.04e-60 199
Msa0050040 AT1G71250.1 35.514 321 196 5 39 355 39 352 8.19e-60 197
Msa0050040 AT1G29660.1 33.033 333 208 7 17 344 14 336 2.72e-58 193
Msa0050040 AT5G15720.1 35.185 324 200 7 39 355 28 348 9.17e-58 192
Msa0050040 AT5G41890.1 35.347 331 186 7 45 354 35 358 1.20e-57 192
Msa0050040 AT5G18430.1 32.378 349 227 5 9 353 1 344 1.53e-57 191
Msa0050040 AT3G04290.1 32.312 359 220 7 2 353 1 343 4.48e-57 190
Msa0050040 AT4G10950.1 32.808 317 205 3 39 352 69 380 1.94e-56 189
Msa0050040 AT1G74460.1 32.492 317 206 6 45 356 27 340 1.11e-53 181
Msa0050040 AT5G37690.1 31.385 325 213 7 34 353 20 339 1.36e-53 181
Msa0050040 AT2G31550.1 42.574 202 113 3 147 345 1 202 1.07e-51 171
Msa0050040 AT5G37690.2 30.769 325 207 8 34 353 20 331 9.20e-49 168
Msa0050040 AT1G53920.1 30.836 347 227 8 13 352 21 361 1.12e-48 169
Msa0050040 AT1G71120.1 33.746 323 199 8 38 354 28 341 6.14e-48 166
Msa0050040 AT5G33370.2 35.766 274 164 6 33 299 22 290 3.89e-46 160
Msa0050040 AT2G19010.1 32.692 312 184 11 39 342 28 321 3.07e-45 159
Msa0050040 AT2G19010.2 32.692 312 184 11 39 342 58 351 4.56e-45 159
Msa0050040 AT2G03980.2 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0050040 AT2G03980.3 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0050040 AT2G03980.1 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0050040 AT2G03980.4 33.832 334 198 11 40 361 42 364 3.87e-44 156
Msa0050040 AT2G19060.1 31.889 323 196 11 39 353 28 334 9.27e-44 155
Msa0050040 AT2G19050.1 31.746 315 187 11 39 344 29 324 1.06e-43 154
Msa0050040 AT1G71691.3 35.075 268 158 8 39 299 53 311 5.09e-41 146
Msa0050040 AT5G15720.2 34.831 267 164 7 40 299 29 292 1.25e-38 140
Msa0050040 AT1G71691.1 32.129 249 155 6 102 343 13 254 2.92e-38 138
Msa0050040 AT3G14225.2 28.923 325 207 8 41 350 37 352 3.53e-38 140
Msa0050040 AT4G30140.1 32.581 310 185 12 39 342 31 322 4.39e-38 139
Msa0050040 AT3G14225.1 28.571 329 207 8 41 350 37 356 1.42e-37 139
Msa0050040 AT4G16230.1 38.095 231 132 5 13 238 6 230 3.00e-37 135
Msa0050040 AT5G40990.1 28.660 321 213 8 41 350 37 352 1.30e-36 136
Msa0050040 AT1G53940.2 28.972 321 212 8 41 350 39 354 8.42e-36 134
Msa0050040 AT5G15720.3 30.651 261 174 5 102 355 57 317 1.13e-35 133
Msa0050040 AT2G19050.2 31.890 254 155 8 39 286 29 270 1.61e-34 128
Msa0050040 AT3G05180.1 28.739 341 207 10 40 353 35 366 3.28e-33 127
Msa0050040 AT1G28610.2 30.588 340 198 13 41 354 31 358 3.37e-32 124
Msa0050040 AT2G04020.1 38.164 207 106 7 40 236 42 236 1.74e-31 120
Msa0050040 AT1G53990.1 26.562 320 214 8 41 350 35 343 7.54e-31 120
Msa0050040 AT1G54790.3 27.378 347 204 14 40 353 31 362 9.65e-31 120
Msa0050040 AT2G04020.2 38.164 207 106 7 40 236 42 236 1.02e-30 119
Msa0050040 AT2G27360.1 30.383 339 200 12 41 353 33 361 4.18e-29 116
Msa0050040 AT1G28600.1 29.586 338 202 14 41 353 31 357 3.14e-28 114
Msa0050040 AT1G31550.2 28.614 339 206 14 41 354 36 363 3.25e-28 114
Msa0050040 AT1G28580.1 29.651 344 195 16 41 353 37 364 3.65e-28 114
Msa0050040 AT1G28640.1 29.204 339 203 15 41 353 35 362 6.29e-28 113
Msa0050040 AT1G28590.1 28.529 340 206 13 41 354 36 364 7.64e-28 113
Msa0050040 AT1G28670.1 29.674 337 205 14 41 353 35 363 1.46e-27 112
Msa0050040 AT1G54000.1 27.619 315 207 6 36 344 31 330 3.70e-27 111
Msa0050040 AT1G28650.1 29.058 382 232 19 4 358 1 370 8.45e-27 110
Msa0050040 AT1G54030.1 27.832 309 192 10 42 344 53 336 2.71e-26 108
Msa0050040 AT1G54010.1 28.391 317 198 9 39 344 32 330 3.34e-26 108
Msa0050040 AT1G28570.1 28.297 364 222 14 17 354 12 362 9.99e-26 107
Msa0050040 AT3G26430.1 27.540 374 209 14 9 342 1 352 1.19e-25 106
Msa0050040 AT1G28660.1 28.783 337 207 14 41 353 35 362 1.29e-25 106
Msa0050040 AT5G14450.1 26.984 378 232 14 10 358 14 376 1.86e-25 106
Msa0050040 AT1G54790.1 26.074 349 206 15 40 353 30 361 2.88e-25 105
Msa0050040 AT1G09390.1 29.132 357 221 13 5 344 3 344 4.22e-25 105
Msa0050040 AT1G56670.1 27.485 342 208 13 40 359 39 362 4.80e-25 104
Msa0050040 AT1G31550.1 27.434 339 207 14 41 354 36 360 6.28e-25 104
Msa0050040 AT5G03610.1 25.749 334 214 12 42 361 44 357 7.23e-25 104
Msa0050040 AT1G54020.2 27.070 314 203 10 38 344 28 322 9.75e-25 103
Msa0050040 AT1G28660.2 28.783 337 206 15 41 353 35 361 2.89e-24 102
Msa0050040 AT1G53940.1 28.571 266 182 6 41 302 39 300 4.63e-24 100
Msa0050040 AT3G62280.1 27.746 346 195 16 40 356 35 354 3.66e-23 99.4
Msa0050040 AT3G09930.2 26.686 341 214 12 30 357 32 349 7.59e-23 98.6
Msa0050040 AT3G09930.1 26.686 341 214 12 30 357 32 349 7.59e-23 98.6
Msa0050040 AT4G01130.1 25.789 380 221 14 17 358 14 370 8.39e-23 98.6
Msa0050040 AT5G45910.1 28.415 366 225 16 17 354 7 363 2.38e-22 97.4
Msa0050040 AT1G67830.1 24.642 349 211 13 40 352 29 361 2.36e-21 94.4
Msa0050040 AT5G03600.1 26.730 318 203 12 39 348 12 307 3.31e-21 93.2
Msa0050040 AT5G03600.2 26.730 318 203 12 39 348 47 342 5.35e-21 93.2
Msa0050040 AT3G27950.1 25.770 357 226 12 27 358 18 360 2.64e-20 91.7
Msa0050040 AT1G54790.2 24.267 375 206 16 40 353 30 387 3.79e-20 91.3
Msa0050040 AT4G16233.1 43.434 99 55 1 247 344 5 103 4.54e-20 85.5
Msa0050040 AT3G14210.1 28.485 330 194 15 35 348 33 336 6.47e-19 87.8
Msa0050040 AT4G01130.3 25.694 288 174 9 105 358 3 284 8.79e-18 83.2
Msa0050040 AT4G16220.1 48.315 89 44 1 39 127 28 114 4.21e-17 80.5
Msa0050040 AT1G54030.2 26.996 263 163 8 42 298 53 292 4.54e-17 81.3
Msa0050040 AT1G56670.2 27.076 277 167 11 40 299 39 297 1.27e-15 77.0
Msa0050040 AT2G36325.1 24.620 329 206 13 42 353 48 351 2.76e-15 76.6
Msa0050040 AT4G01130.2 26.032 315 185 13 41 326 34 329 2.98e-15 76.3
Msa0050040 AT3G14220.1 24.930 357 217 14 16 350 5 332 5.01e-14 72.8
Msa0050040 AT1G54020.1 23.715 253 172 7 96 344 1 236 6.36e-14 72.0
Msa0050040 AT1G54020.5 23.715 253 172 7 96 344 1 236 6.36e-14 72.0
Msa0050040 AT1G54020.3 23.715 253 172 7 96 344 1 236 6.36e-14 72.0
Msa0050040 AT1G28580.2 26.695 236 140 11 139 353 60 283 1.94e-13 70.9
Msa0050040 AT3G62280.2 26.148 283 160 14 40 299 35 291 2.04e-13 70.5
Msa0050040 AT5G03980.1 25.941 239 153 8 136 360 90 318 3.84e-13 70.1
Msa0050040 AT1G54020.4 28.000 150 101 4 199 344 41 187 3.65e-12 65.9
Msa0050040 AT1G28600.2 34.286 175 95 10 18 180 9 175 3.75e-11 62.8
Msa0050040 AT1G28610.1 33.766 154 84 7 39 180 29 176 6.73e-11 62.4
Msa0050040 AT1G28570.3 25.490 204 131 7 167 354 1 199 9.67e-11 61.6

Find 87 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAATATTTCTTTCTATT+TGG 0.138549 1_2:-3603916 Msa0050040:three_prime_UTR
AACTCATCAAAATACAAATT+TGG 0.243337 1_2:+3604029 None:intergenic
GGAGTATGTACCTGCATATT+TGG 0.251645 1_2:-3605702 Msa0050040:CDS
ATGCTTCAGAATACGTCTTT+TGG 0.268336 1_2:-3604190 Msa0050040:CDS
AATATAAACTATCCTGCTAT+TGG 0.271340 1_2:+3604718 None:intergenic
AGATCACTGGATTTGAGATT+TGG 0.274463 1_2:+3605677 None:intergenic
GGAGATTCAATAGTTGATTC+AGG 0.282268 1_2:-3608484 Msa0050040:CDS
GGCTTTGCCTCCGGAGCTTC+AGG 0.282493 1_2:-3605641 Msa0050040:CDS
TGATTGTTTAAGTATTTCTT+TGG 0.310588 1_2:-3603990 Msa0050040:three_prime_UTR
TGGTGAGGGTGATTGTTTAA+TGG 0.311578 1_2:-3603970 Msa0050040:three_prime_UTR
AAATCCAGTGATCTTCTTAC+AGG 0.317537 1_2:-3605668 Msa0050040:CDS
AAATGCAATTTCCCTCCTTA+TGG 0.328590 1_2:-3608433 Msa0050040:CDS
TCTGGCATGAACAACATAAT+AGG 0.347030 1_2:+3605285 None:intergenic
TAAGTATGATATAATGCTTT+AGG 0.348716 1_2:+3608692 None:intergenic
GTTGGAGGAGCTAGCTAGTA+TGG 0.367220 1_2:-3608638 Msa0050040:exon
TTTACTTGCAGCTGAACAAT+TGG 0.371511 1_2:-3605732 Msa0050040:intron
GTTCCAGCAGTGATAGCATT+TGG 0.381837 1_2:-3608505 Msa0050040:CDS
ATCTGCTCAAATATCTTTCA+AGG 0.398464 1_2:+3604117 None:intergenic
AGTTACCTTTACAAAATTAG+TGG 0.409175 1_2:+3605216 None:intergenic
CCATCACAGAGAACTCTTGC+AGG 0.411427 1_2:-3604839 Msa0050040:CDS
AATAGAAAGAAATATTTCAT+AGG 0.417636 1_2:+3603919 None:intergenic
ATATAAACTATCCTGCTATT+GGG 0.437929 1_2:+3604719 None:intergenic
ATCAGAAATGAAGTAGTCAT+TGG 0.448951 1_2:+3608598 None:intergenic
TTTCAAGGTGGTGTCCCAAC+TGG 0.461503 1_2:-3608403 Msa0050040:CDS
ATGTCTAGTTGAGCAGATAA+TGG 0.462544 1_2:+3605421 None:intergenic
CATTGCAAAATCGACCAGTT+GGG 0.467454 1_2:+3608389 None:intergenic
CCTTGAAAATCTTTGCCATA+AGG 0.472764 1_2:+3608418 None:intergenic
GTACTGAGTGCACCACCAAT+TGG 0.474419 1_2:-3604869 Msa0050040:CDS
GGGAAGAAAGAAGTGTTTGT+TGG 0.475790 1_2:-3608656 Msa0050040:five_prime_UTR
TCAGAACAAGTAGCATCTAA+AGG 0.482084 1_2:+3604212 None:intergenic
TACAAAATTAGTGGCTGAGT+TGG 0.482731 1_2:+3605225 None:intergenic
GGGAAGTTGAAAGGAATTGT+TGG 0.482912 1_2:-3605382 Msa0050040:CDS
AGCTGAACAATTGGGTATCA+AGG 0.484175 1_2:-3605723 Msa0050040:CDS
GTTTAAGTATTTCTTTGGTG+AGG 0.484607 1_2:-3603985 Msa0050040:three_prime_UTR
CAATAACGACCTCAAAACTT+TGG 0.489567 1_2:-3608458 Msa0050040:CDS
TTTAAGTATTTCTTTGGTGA+GGG 0.490452 1_2:-3603984 Msa0050040:three_prime_UTR
AGATTTGGATCCAAATATGC+AGG 0.491272 1_2:+3605692 None:intergenic
CCATTGCAAAATCGACCAGT+TGG 0.494511 1_2:+3608388 None:intergenic
AGGAATGTCATATTGCAATC+TGG 0.497840 1_2:+3605267 None:intergenic
ACATGTTCAAAGAATACATT+GGG 0.499245 1_2:-3605402 Msa0050040:CDS
TTACTTGCAGCTGAACAATT+GGG 0.499390 1_2:-3605731 Msa0050040:intron
TTTCTATATGCTCGTTCTGT+AGG 0.500946 1_2:+3604155 None:intergenic
TCTCCAAATGCTATCACTGC+TGG 0.502033 1_2:+3608502 None:intergenic
CAGAACAAGTAGCATCTAAA+GGG 0.502089 1_2:+3604213 None:intergenic
GCTGGAACTGTAACATTTGG+TGG 0.503557 1_2:+3608520 None:intergenic
CCTGCAAGAGTTCTCTGTGA+TGG 0.518882 1_2:+3604839 None:intergenic
ATACTTATAATTTCTGTCAC+GGG 0.521923 1_2:-3608676 Msa0050040:five_prime_UTR
GTCAGAACTCACCCAATAGC+AGG 0.522356 1_2:-3604730 Msa0050040:CDS
ACCGCTATTTGTGGTGTCAA+AGG 0.522728 1_2:+3605611 None:intergenic
GACAGAGGTTGTTGTGGCAC+AGG 0.524250 1_2:-3604263 Msa0050040:CDS
ACTGCTGGAACTGTAACATT+TGG 0.526783 1_2:+3608517 None:intergenic
CATACTTATAATTTCTGTCA+CGG 0.526971 1_2:-3608677 Msa0050040:five_prime_UTR
ATGCAAATAATACAATGAAA+CGG 0.527516 1_2:+3608575 None:intergenic
GGATAGGAAATATATAAACT+TGG 0.528249 1_2:-3604908 Msa0050040:intron
GACATAAGATCAGTGTAAGC+AGG 0.531306 1_2:+3605247 None:intergenic
TGTGATGGCACACATCCAAT+TGG 0.535323 1_2:+3604854 None:intergenic
AATTGCAGGATTCAAAGTTG+TGG 0.538805 1_2:-3604285 Msa0050040:intron
GGAAAGAACAAACTTCATAC+TGG 0.540634 1_2:-3605356 Msa0050040:CDS
ACAGGCGTAGGCTTTGCCTC+CGG 0.541095 1_2:-3605650 Msa0050040:CDS
AAAATCCCCTCAGATATACT+TGG 0.543755 1_2:-3608364 Msa0050040:intron
AATGATGTGATATATATGAT+TGG 0.544119 1_2:+3603795 None:intergenic
GAGAGTACCAAGTATATCTG+AGG 0.544723 1_2:+3608357 None:intergenic
TGAAAATCTTTGCCATAAGG+AGG 0.545046 1_2:+3608421 None:intergenic
GAATACATTGGGAAGTTGAA+AGG 0.545870 1_2:-3605391 Msa0050040:CDS
ATGAACAACATAATAGGTGT+TGG 0.552774 1_2:+3605291 None:intergenic
TACGCCTGTAAGAAGATCAC+TGG 0.554567 1_2:+3605664 None:intergenic
AAGAAAGAAGTGTTTGTTGG+AGG 0.556331 1_2:-3608653 Msa0050040:five_prime_UTR
AGGATCGTATCCTGAAGCTC+CGG 0.556985 1_2:+3605631 None:intergenic
TGCATTGTGCTACAAAACGA+AGG 0.567143 1_2:-3608557 Msa0050040:CDS
GAAAATCTTTGCCATAAGGA+GGG 0.574938 1_2:+3608422 None:intergenic
AGAGTACCAAGTATATCTGA+GGG 0.575632 1_2:+3608358 None:intergenic
AGTGATCTTCTTACAGGCGT+AGG 0.576669 1_2:-3605662 Msa0050040:CDS
GCATTGTGCTACAAAACGAA+GGG 0.592507 1_2:-3608556 Msa0050040:CDS
TTACAAATTACAATGTACAA+TGG 0.603132 1_2:-3603832 Msa0050040:three_prime_UTR
GACATGTTCAAAGAATACAT+TGG 0.607658 1_2:-3605403 Msa0050040:CDS
TCCTTTGACACCACAAATAG+CGG 0.614050 1_2:-3605612 Msa0050040:intron
CACAGAGAACTCTTGCAGGA+GGG 0.614252 1_2:-3604835 Msa0050040:CDS
ACAGAGGTTGTTGTGGCACA+GGG 0.618045 1_2:-3604262 Msa0050040:CDS
GTTGAAAGGAATTGTTGGTG+AGG 0.620179 1_2:-3605377 Msa0050040:CDS
GGATTCAAAGTTGTGGACAG+AGG 0.623753 1_2:-3604278 Msa0050040:CDS
TCACAGAGAACTCTTGCAGG+AGG 0.631897 1_2:-3604836 Msa0050040:CDS
ATCGTATCCTGAAGCTCCGG+AGG 0.633985 1_2:+3605634 None:intergenic
TTGACAATGATATCAAGTAG+AGG 0.653200 1_2:+3604683 None:intergenic
GATGGCACACATCCAATTGG+TGG 0.659053 1_2:+3604857 None:intergenic
TTGTGGCACAGGGAAACTAG+AGG 0.676349 1_2:-3604252 Msa0050040:CDS
GTTGTGGACAGAGGTTGTTG+TGG 0.717058 1_2:-3604269 Msa0050040:CDS
GAGTACCAAGTATATCTGAG+GGG 0.751977 1_2:+3608359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATTTATTATACATTAA+GGG + chr1_2:3604828-3604847 None:intergenic 10.0%
!! TGATAATTTATTATACATTA+AGG + chr1_2:3604829-3604848 None:intergenic 10.0%
!! AAAATATGATTTCATAAAAA+TGG + chr1_2:3604993-3605012 None:intergenic 10.0%
!! AAATGATTAAAACAAATATT+AGG + chr1_2:3605314-3605333 None:intergenic 10.0%
!! AAATATTAGATAAATGATAA+AGG - chr1_2:3605444-3605463 Msa0050040:intron 10.0%
!!! TTTTTAAATTTAAGATTGAA+TGG + chr1_2:3606317-3606336 None:intergenic 10.0%
!! ATTAAAAATTGAAACTATAT+CGG + chr1_2:3607513-3607532 None:intergenic 10.0%
!! TGTTTATGATAAAAAAAAAA+AGG + chr1_2:3608095-3608114 None:intergenic 10.0%
!! GAAAAAAATTGTTTATAGTA+GGG - chr1_2:3604489-3604508 Msa0050040:intron 15.0%
!! AAAAAAATTGTTTATAGTAG+GGG - chr1_2:3604490-3604509 Msa0050040:intron 15.0%
!!! GTCAACTTTTTTTTATAAAT+AGG + chr1_2:3604660-3604679 None:intergenic 15.0%
!!! ATTTTAGTGTAAATGTTTAA+TGG + chr1_2:3605187-3605206 None:intergenic 15.0%
!! AACAAATATATAATACTTAC+TGG - chr1_2:3605963-3605982 Msa0050040:intron 15.0%
!!! GCTTTTTATTTTATAGAAAT+GGG - chr1_2:3607324-3607343 Msa0050040:intron 15.0%
!!! GTTATTTTATCATATTTCTA+TGG - chr1_2:3608420-3608439 Msa0050040:CDS 15.0%
!! AATAGAAAGAAATATTTCAT+AGG + chr1_2:3608561-3608580 None:intergenic 15.0%
!! ATGAAATATTTCTTTCTATT+TGG - chr1_2:3608561-3608580 Msa0050040:CDS 15.0%
!! ATGCAAATAATACAATGAAA+CGG + chr1_2:3603905-3603924 None:intergenic 20.0%
!!! TTTCTAGGTTAAAACTTTTT+TGG - chr1_2:3604257-3604276 Msa0050040:CDS 20.0%
!! TAAACTTCAAAGCAAAATAA+CGG - chr1_2:3604341-3604360 Msa0050040:intron 20.0%
!! GGAAAAAAATTGTTTATAGT+AGG - chr1_2:3604488-3604507 Msa0050040:intron 20.0%
!!! CTTTTTTTTATAAATAGGAC+CGG + chr1_2:3604655-3604674 None:intergenic 20.0%
!! GTCAAATGTTTCTTATAAAT+AGG - chr1_2:3604758-3604777 Msa0050040:CDS 20.0%
!! AATGTTTCTTATAAATAGGA+CGG - chr1_2:3604762-3604781 Msa0050040:CDS 20.0%
!!! GAAATCATATTTTCATACTT+TGG - chr1_2:3605000-3605019 Msa0050040:intron 20.0%
!!! GTTGGAAATAATTTTATTGA+TGG + chr1_2:3605133-3605152 None:intergenic 20.0%
!! TTAAAATTAGGTAAGGATAT+AGG + chr1_2:3605221-3605240 None:intergenic 20.0%
!! ACTGAAATTAAAATTAGGTA+AGG + chr1_2:3605228-3605247 None:intergenic 20.0%
!! AAACGACTGAAATTAAAATT+AGG + chr1_2:3605233-3605252 None:intergenic 20.0%
!! AATATTAGGTAAAAAGATGA+AGG + chr1_2:3605300-3605319 None:intergenic 20.0%
!! GAATGACGAAAATATAATTT+AGG - chr1_2:3605891-3605910 Msa0050040:intron 20.0%
!! ACAATTTCATGAACTAAATT+TGG + chr1_2:3606285-3606304 None:intergenic 20.0%
!!! TTTAGTTCATGAAATTGTAA+TGG - chr1_2:3606287-3606306 Msa0050040:intron 20.0%
!!! TAACTTGCATTATTTTTGTT+TGG + chr1_2:3606540-3606559 None:intergenic 20.0%
!! TATGAATATGTGTTTATAAG+TGG + chr1_2:3606654-3606673 None:intergenic 20.0%
!!! TATCATATGTATGTCATTTA+AGG - chr1_2:3606672-3606691 Msa0050040:intron 20.0%
!!! GGCTTTTTATTTTATAGAAA+TGG - chr1_2:3607323-3607342 Msa0050040:intron 20.0%
!! GTACAAGATATTTAAAAGAA+GGG - chr1_2:3607366-3607385 Msa0050040:intron 20.0%
!! TTTCGATAAGTTTAAATCAT+TGG - chr1_2:3607477-3607496 Msa0050040:intron 20.0%
!!! AATAGGAATTACCATATTTT+TGG + chr1_2:3607823-3607842 None:intergenic 20.0%
!! TGACTAAGTTAAGATATAAT+AGG + chr1_2:3607840-3607859 None:intergenic 20.0%
!!! GTATTTATTTTTTGAATTGC+AGG - chr1_2:3608178-3608197 Msa0050040:intron 20.0%
!! AACTCATCAAAATACAAATT+TGG + chr1_2:3608451-3608470 None:intergenic 20.0%
!! TGATTGTTTAAGTATTTCTT+TGG - chr1_2:3608487-3608506 Msa0050040:CDS 20.0%
!! TTACAAATTACAATGTACAA+TGG - chr1_2:3608645-3608664 Msa0050040:five_prime_UTR 20.0%
!! AATGATGTGATATATATGAT+TGG + chr1_2:3608685-3608704 None:intergenic 20.0%
! CATACTTATAATTTCTGTCA+CGG - chr1_2:3603800-3603819 Msa0050040:three_prime_UTR 25.0%
! ATACTTATAATTTCTGTCAC+GGG - chr1_2:3603801-3603820 Msa0050040:three_prime_UTR 25.0%
! AGGAATGAGATAAAATAGAA+AGG + chr1_2:3604322-3604341 None:intergenic 25.0%
!!! GTTATTTTGCTTTGAAGTTT+AGG + chr1_2:3604342-3604361 None:intergenic 25.0%
! CTTCTCAAAATTTCTACATT+TGG + chr1_2:3604517-3604536 None:intergenic 25.0%
!!! CAAATGTAGAAATTTTGAGA+AGG - chr1_2:3604515-3604534 Msa0050040:intron 25.0%
! TGCATCAAACATGATATTTA+AGG - chr1_2:3604604-3604623 Msa0050040:intron 25.0%
! CATTGCATAAATGATGTATT+TGG + chr1_2:3604729-3604748 None:intergenic 25.0%
! TTATAAAACATCATAGTCGT+TGG + chr1_2:3605151-3605170 None:intergenic 25.0%
! CTTGTAGTTCACAAAAAAAA+AGG + chr1_2:3605365-3605384 None:intergenic 25.0%
! GACTAAAATGAATCAAAAGA+GGG - chr1_2:3605466-3605485 Msa0050040:intron 25.0%
! TGTGGCAAAAAAATATGTAA+CGG - chr1_2:3605562-3605581 Msa0050040:intron 25.0%
! GTGGCAAAAAAAATATCTAA+CGG + chr1_2:3605718-3605737 None:intergenic 25.0%
!!! TATCATTTTTTGATTCGACT+TGG + chr1_2:3605815-3605834 None:intergenic 25.0%
! GTCGAATCAAAAAATGATAA+AGG - chr1_2:3605816-3605835 Msa0050040:intron 25.0%
!! CTTTTAACCAATATTCATCT+TGG + chr1_2:3605843-3605862 None:intergenic 25.0%
!!! GGTAGGATATTTGTTTTTAA+GGG + chr1_2:3606014-3606033 None:intergenic 25.0%
!!! AGGTAGGATATTTGTTTTTA+AGG + chr1_2:3606015-3606034 None:intergenic 25.0%
! ATATATATTGCAAACACTTG+AGG + chr1_2:3606035-3606054 None:intergenic 25.0%
! AGAAACAATATAGTTGAGAT+AGG - chr1_2:3606080-3606099 Msa0050040:intron 25.0%
! ATGATTGACCATATTCATAT+GGG + chr1_2:3606109-3606128 None:intergenic 25.0%
! TTGTCAATGATTAATCTATG+CGG + chr1_2:3606138-3606157 None:intergenic 25.0%
! TTAAGAACCTACTAAATCTA+AGG + chr1_2:3606180-3606199 None:intergenic 25.0%
!! ATTTATATCTTCTAGAGGTA+GGG - chr1_2:3606378-3606397 Msa0050040:intron 25.0%
!! TTATTGATAGCTGCAAATAT+AGG + chr1_2:3606574-3606593 None:intergenic 25.0%
! AGCTATCAATAAAATCAGTA+TGG - chr1_2:3606582-3606601 Msa0050040:intron 25.0%
!! ATGAGATATTCTAACTTGTA+AGG - chr1_2:3606616-3606635 Msa0050040:intron 25.0%
!! TTTTTATATACCGCTATTTG+TGG + chr1_2:3606878-3606897 None:intergenic 25.0%
! ATTTATAAGGTGCATCTAAT+AGG - chr1_2:3606921-3606940 Msa0050040:intron 25.0%
! ACATGTTCAAAGAATACATT+GGG - chr1_2:3607075-3607094 Msa0050040:intron 25.0%
!!! AATAGTCTTTTTGTTTTGGT+GGG - chr1_2:3607146-3607165 Msa0050040:intron 25.0%
! AGTTACCTTTACAAAATTAG+TGG + chr1_2:3607264-3607283 None:intergenic 25.0%
! GGTACAAGATATTTAAAAGA+AGG - chr1_2:3607365-3607384 Msa0050040:intron 25.0%
!!! TTTGATCGACATTTTTTCAT+CGG + chr1_2:3607450-3607469 None:intergenic 25.0%
!! TTTTTCCCTCTTGAATAAAA+TGG - chr1_2:3607548-3607567 Msa0050040:intron 25.0%
! GGATAGGAAATATATAAACT+TGG - chr1_2:3607569-3607588 Msa0050040:intron 25.0%
! ATATAAACTATCCTGCTATT+GGG + chr1_2:3607761-3607780 None:intergenic 25.0%
! AATATAAACTATCCTGCTAT+TGG + chr1_2:3607762-3607781 None:intergenic 25.0%
! ATTGTCAACTACCAAAAATA+TGG - chr1_2:3607809-3607828 Msa0050040:intron 25.0%
! TTTAAGTATTTCTTTGGTGA+GGG - chr1_2:3608493-3608512 Msa0050040:CDS 25.0%
! AAATGTCCTATGAAAAATCA+AGG - chr1_2:3608530-3608549 Msa0050040:CDS 25.0%
! AATGTCCTATGAAAAATCAA+GGG - chr1_2:3608531-3608550 Msa0050040:CDS 25.0%
ATCAGAAATGAAGTAGTCAT+TGG + chr1_2:3603882-3603901 None:intergenic 30.0%
AAAATAACGGTTCAGCTATA+TGG - chr1_2:3604354-3604373 Msa0050040:intron 30.0%
ATGATATGGCGAAAGAAAAA+CGG + chr1_2:3604433-3604452 None:intergenic 30.0%
ACTCGAAACGAAATATGATA+TGG + chr1_2:3604447-3604466 None:intergenic 30.0%
GAGAAGGAAGACAAAATTAT+TGG - chr1_2:3604531-3604550 Msa0050040:intron 30.0%
ATTATTGGAGAGGATAAGAT+AGG - chr1_2:3604546-3604565 Msa0050040:intron 30.0%
TTAATATATCATACTCCCTC+CGG - chr1_2:3604633-3604652 Msa0050040:intron 30.0%
! TTTTTATAAATAGGACCGGA+GGG + chr1_2:3604651-3604670 None:intergenic 30.0%
!!! TTTTTTATAAATAGGACCGG+AGG + chr1_2:3604652-3604671 None:intergenic 30.0%
TTCTTATAAATAGGACGGAA+TGG - chr1_2:3604767-3604786 Msa0050040:CDS 30.0%
GGACTAAAATGAATCAAAAG+AGG - chr1_2:3605465-3605484 Msa0050040:intron 30.0%
TAAAGGACCAAGATGAATAT+TGG - chr1_2:3605833-3605852 Msa0050040:intron 30.0%
! TGTTTCTGACAGATTATCTA+AGG + chr1_2:3605947-3605966 None:intergenic 30.0%
TCTAGCTACAAGACAATATA+AGG + chr1_2:3606059-3606078 None:intergenic 30.0%
CATGATTGACCATATTCATA+TGG + chr1_2:3606110-3606129 None:intergenic 30.0%
TTGTACACCTTAGATTTAGT+AGG - chr1_2:3606170-3606189 Msa0050040:intron 30.0%
ATACTTAAGAGCTAGATCTA+GGG + chr1_2:3606242-3606261 None:intergenic 30.0%
GTCACATTTATATCTTCTAG+AGG - chr1_2:3606373-3606392 Msa0050040:intron 30.0%
! CATTTATATCTTCTAGAGGT+AGG - chr1_2:3606377-3606396 Msa0050040:intron 30.0%
GACATGTTCAAAGAATACAT+TGG - chr1_2:3607074-3607093 Msa0050040:intron 30.0%
CACCAAAACAAAAAGACTAT+TGG + chr1_2:3607147-3607166 None:intergenic 30.0%
!!! CAATAGTCTTTTTGTTTTGG+TGG - chr1_2:3607145-3607164 Msa0050040:intron 30.0%
ATGAACAACATAATAGGTGT+TGG + chr1_2:3607189-3607208 None:intergenic 30.0%
CTAACTACTATAGTGTCTAA+AGG - chr1_2:3607290-3607309 Msa0050040:intron 30.0%
ATCTTGTACCATTTCCAAAT+GGG + chr1_2:3607355-3607374 None:intergenic 30.0%
TATCTTGTACCATTTCCAAA+TGG + chr1_2:3607356-3607375 None:intergenic 30.0%
! TTAAAAGAAGGGTTTTCTCT+AGG - chr1_2:3607377-3607396 Msa0050040:intron 30.0%
! CCTATCCATTTTATTCAAGA+GGG + chr1_2:3607556-3607575 None:intergenic 30.0%
! TCCTATCCATTTTATTCAAG+AGG + chr1_2:3607557-3607576 None:intergenic 30.0%
TTGACAATGATATCAAGTAG+AGG + chr1_2:3607797-3607816 None:intergenic 30.0%
AACTTAGTCATAGAATTGTG+AGG - chr1_2:3607850-3607869 Msa0050040:intron 30.0%
ATCTGCTCAAATATCTTTCA+AGG + chr1_2:3608363-3608382 None:intergenic 30.0%
GTTTAAGTATTTCTTTGGTG+AGG - chr1_2:3608492-3608511 Msa0050040:CDS 30.0%
!!! TGTACAATGGTTTTATGTTG+AGG - chr1_2:3608658-3608677 Msa0050040:five_prime_UTR 30.0%
!! AAGAAAGAAGTGTTTGTTGG+AGG - chr1_2:3603824-3603843 Msa0050040:three_prime_UTR 35.0%
! GGAGATTCAATAGTTGATTC+AGG - chr1_2:3603993-3604012 Msa0050040:three_prime_UTR 35.0%
CAATAACGACCTCAAAACTT+TGG - chr1_2:3604019-3604038 Msa0050040:three_prime_UTR 35.0%
! TGCATTTGACCAAAGTTTTG+AGG + chr1_2:3604031-3604050 None:intergenic 35.0%
AAATGCAATTTCCCTCCTTA+TGG - chr1_2:3604044-3604063 Msa0050040:three_prime_UTR 35.0%
GAAAATCTTTGCCATAAGGA+GGG + chr1_2:3604058-3604077 None:intergenic 35.0%
TGAAAATCTTTGCCATAAGG+AGG + chr1_2:3604059-3604078 None:intergenic 35.0%
CCTTGAAAATCTTTGCCATA+AGG + chr1_2:3604062-3604081 None:intergenic 35.0%
! CCTTATGGCAAAGATTTTCA+AGG - chr1_2:3604059-3604078 Msa0050040:three_prime_UTR 35.0%
!! TATGGCAAAGATTTTCAAGG+TGG - chr1_2:3604062-3604081 Msa0050040:three_prime_UTR 35.0%
AAAATCCCCTCAGATATACT+TGG - chr1_2:3604113-3604132 Msa0050040:CDS 35.0%
! AGAGTACCAAGTATATCTGA+GGG + chr1_2:3604122-3604141 None:intergenic 35.0%
GGAAGACAAAATTATTGGAG+AGG - chr1_2:3604536-3604555 Msa0050040:intron 35.0%
GTTTGATGCAGCAAAGAAAT+AGG + chr1_2:3604594-3604613 None:intergenic 35.0%
! TTCGTTTGATGGTCATGATA+GGG + chr1_2:3604805-3604824 None:intergenic 35.0%
TACATTAAGGGTTCGTTTGA+TGG + chr1_2:3604816-3604835 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG + chr1_2:3605766-3605785 None:intergenic 35.0%
AAGCTCCATTTACTCCATTT+AGG - chr1_2:3605523-3605542 Msa0050040:intron 35.0%
AGCTCCATTTACTCCATTTA+GGG - chr1_2:3605524-3605543 Msa0050040:intron 35.0%
CAAACCCTAAATGGAGTAAA+TGG + chr1_2:3605750-3605769 None:intergenic 35.0%
! CATTTACTCCATTTAGGGTT+TGG - chr1_2:3605529-3605548 Msa0050040:intron 35.0%
GTTGTGATATGAGAGAAGAA+GGG + chr1_2:3605662-3605681 None:intergenic 35.0%
TGTTGTGATATGAGAGAAGA+AGG + chr1_2:3605663-3605682 None:intergenic 35.0%
! CATTTACTCCATTTAGGGTT+TGG + chr1_2:3605529-3605548 None:intergenic 35.0%
CAAACCCTAAATGGAGTAAA+TGG - chr1_2:3605750-3605769 Msa0050040:intron 35.0%
AGCTCCATTTACTCCATTTA+GGG + chr1_2:3605524-3605543 None:intergenic 35.0%
AAGCTCCATTTACTCCATTT+AGG + chr1_2:3605523-3605542 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG - chr1_2:3605766-3605785 Msa0050040:intron 35.0%
! TTACTGGCGTTTGAAATACA+AGG - chr1_2:3605979-3605998 Msa0050040:intron 35.0%
! TACTGGCGTTTGAAATACAA+GGG - chr1_2:3605980-3605999 Msa0050040:intron 35.0%
ATATTGCAAACACTTGAGGT+AGG + chr1_2:3606031-3606050 None:intergenic 35.0%
ATAGGAGACCCATATGAATA+TGG - chr1_2:3606098-3606117 Msa0050040:intron 35.0%
! CTAAGGTGTACAAAGTATCA+TGG + chr1_2:3606163-3606182 None:intergenic 35.0%
CATACTTAAGAGCTAGATCT+AGG + chr1_2:3606243-3606262 None:intergenic 35.0%
TTTACTTGCAGCTGAACAAT+TGG - chr1_2:3606745-3606764 Msa0050040:intron 35.0%
TTACTTGCAGCTGAACAATT+GGG - chr1_2:3606746-3606765 Msa0050040:intron 35.0%
AGATTTGGATCCAAATATGC+AGG + chr1_2:3606788-3606807 None:intergenic 35.0%
! AGATCACTGGATTTGAGATT+TGG + chr1_2:3606803-3606822 None:intergenic 35.0%
AAATCCAGTGATCTTCTTAC+AGG - chr1_2:3606809-3606828 Msa0050040:intron 35.0%
TGTTAAAATTGACCCTAGTG+TGG - chr1_2:3606960-3606979 Msa0050040:intron 35.0%
GTTAAAATTGACCCTAGTGT+GGG - chr1_2:3606961-3606980 Msa0050040:intron 35.0%
ACAAGCAAGTCACAAAACAA+TGG + chr1_2:3607014-3607033 None:intergenic 35.0%
ATGTCTAGTTGAGCAGATAA+TGG + chr1_2:3607059-3607078 None:intergenic 35.0%
GAATACATTGGGAAGTTGAA+AGG - chr1_2:3607086-3607105 Msa0050040:intron 35.0%
GGAAAGAACAAACTTCATAC+TGG - chr1_2:3607121-3607140 Msa0050040:intron 35.0%
!! GGCCAATAGTCTTTTTGTTT+TGG - chr1_2:3607142-3607161 Msa0050040:intron 35.0%
TCTGGCATGAACAACATAAT+AGG + chr1_2:3607195-3607214 None:intergenic 35.0%
AGGAATGTCATATTGCAATC+TGG + chr1_2:3607213-3607232 None:intergenic 35.0%
TACAAAATTAGTGGCTGAGT+TGG + chr1_2:3607255-3607274 None:intergenic 35.0%
! CTCAGCCACTAATTTTGTAA+AGG - chr1_2:3607256-3607275 Msa0050040:intron 35.0%
AGTGTCTAAAGGAGATAAGA+TGG - chr1_2:3607301-3607320 Msa0050040:intron 35.0%
GTGTCTAAAGGAGATAAGAT+GGG - chr1_2:3607302-3607321 Msa0050040:intron 35.0%
!! AGAAATGGGTTTTTCCCATT+TGG - chr1_2:3607338-3607357 Msa0050040:intron 35.0%
CAACACTTGAAAAAGCTGAT+CGG - chr1_2:3607414-3607433 Msa0050040:intron 35.0%
AACACTTGAAAAAGCTGATC+GGG - chr1_2:3607415-3607434 Msa0050040:intron 35.0%
CCCTCTTGAATAAAATGGAT+AGG - chr1_2:3607553-3607572 Msa0050040:intron 35.0%
AATTGCAGGATTCAAAGTTG+TGG - chr1_2:3608192-3608211 Msa0050040:intron 35.0%
CAGAACAAGTAGCATCTAAA+GGG + chr1_2:3608267-3608286 None:intergenic 35.0%
TCAGAACAAGTAGCATCTAA+AGG + chr1_2:3608268-3608287 None:intergenic 35.0%
! ATGCTTCAGAATACGTCTTT+TGG - chr1_2:3608287-3608306 Msa0050040:intron 35.0%
! TGCTTCAGAATACGTCTTTT+GGG - chr1_2:3608288-3608307 Msa0050040:intron 35.0%
TTTCTATATGCTCGTTCTGT+AGG + chr1_2:3608325-3608344 None:intergenic 35.0%
!! GGGAAGAAAGAAGTGTTTGT+TGG - chr1_2:3603821-3603840 Msa0050040:three_prime_UTR 40.0%
TGCATTGTGCTACAAAACGA+AGG - chr1_2:3603920-3603939 Msa0050040:three_prime_UTR 40.0%
GCATTGTGCTACAAAACGAA+GGG - chr1_2:3603921-3603940 Msa0050040:three_prime_UTR 40.0%
ACTGCTGGAACTGTAACATT+TGG + chr1_2:3603963-3603982 None:intergenic 40.0%
CATTGCAAAATCGACCAGTT+GGG + chr1_2:3604091-3604110 None:intergenic 40.0%
GAGTACCAAGTATATCTGAG+GGG + chr1_2:3604121-3604140 None:intergenic 40.0%
!! GAGAGTACCAAGTATATCTG+AGG + chr1_2:3604123-3604142 None:intergenic 40.0%
! CGAGTGTGAATTGATAGTTG+TGG - chr1_2:3604462-3604481 Msa0050040:intron 40.0%
! GTGAATTGATAGTTGTGGCA+TGG - chr1_2:3604467-3604486 Msa0050040:intron 40.0%
! GTTCGTTTGATGGTCATGAT+AGG + chr1_2:3604806-3604825 None:intergenic 40.0%
CCTTTCACATGAGAATCGTA+GGG + chr1_2:3605043-3605062 None:intergenic 40.0%
CCTACGATTCTCATGTGAAA+GGG - chr1_2:3605041-3605060 Msa0050040:intron 40.0%
AAGAGGGTAAATGACGAGTT+CGG - chr1_2:3605482-3605501 Msa0050040:intron 40.0%
TCTTGCATCCAAACCCTAAA+TGG + chr1_2:3605741-3605760 None:intergenic 40.0%
TCTTGCATCCAAACCCTAAA+TGG - chr1_2:3605741-3605760 Msa0050040:intron 40.0%
ACTTGGTCATTTACGAGTTC+GGG + chr1_2:3605798-3605817 None:intergenic 40.0%
! GACTTGGTCATTTACGAGTT+CGG + chr1_2:3605799-3605818 None:intergenic 40.0%
TAGAGGTAGGGTATAGAAGA+GGG - chr1_2:3606390-3606409 Msa0050040:intron 40.0%
GAGAAGAAGAAGGAATGTTG+TGG - chr1_2:3606434-3606453 Msa0050040:intron 40.0%
GAACTCCAACTTATAACACG+AGG - chr1_2:3606456-3606475 Msa0050040:intron 40.0%
GACAACAAACATCCAAATCG+TGG + chr1_2:3606483-3606502 None:intergenic 40.0%
AGCTGAACAATTGGGTATCA+AGG - chr1_2:3606754-3606773 Msa0050040:intron 40.0%
GGAGTATGTACCTGCATATT+TGG - chr1_2:3606775-3606794 Msa0050040:intron 40.0%
TCCTTTGACACCACAAATAG+CGG - chr1_2:3606865-3606884 Msa0050040:intron 40.0%
ATCAATTTCCACCCACACTA+GGG + chr1_2:3606975-3606994 None:intergenic 40.0%
TATCAATTTCCACCCACACT+AGG + chr1_2:3606976-3606995 None:intergenic 40.0%
GGGAAGTTGAAAGGAATTGT+TGG - chr1_2:3607095-3607114 Msa0050040:intron 40.0%
GTTGAAAGGAATTGTTGGTG+AGG - chr1_2:3607100-3607119 Msa0050040:intron 40.0%
!!! AGTCTTTTTGTTTTGGTGGG+AGG - chr1_2:3607149-3607168 Msa0050040:intron 40.0%
GACATAAGATCAGTGTAAGC+AGG + chr1_2:3607233-3607252 None:intergenic 40.0%
! GGGTTTTTCCCATTTGGAAA+TGG - chr1_2:3607344-3607363 Msa0050040:intron 40.0%
TGGTGAGGGTGATTGTTTAA+TGG - chr1_2:3608507-3608526 Msa0050040:CDS 40.0%
! GACAGCCCTTGATTTTTCAT+AGG + chr1_2:3608539-3608558 None:intergenic 40.0%
GCTGGAACTGTAACATTTGG+TGG + chr1_2:3603960-3603979 None:intergenic 45.0%
GTTCCAGCAGTGATAGCATT+TGG - chr1_2:3603972-3603991 Msa0050040:three_prime_UTR 45.0%
TCTCCAAATGCTATCACTGC+TGG + chr1_2:3603978-3603997 None:intergenic 45.0%
CCATTGCAAAATCGACCAGT+TGG + chr1_2:3604092-3604111 None:intergenic 45.0%
!! CCAACTGGTCGATTTTGCAA+TGG - chr1_2:3604089-3604108 Msa0050040:three_prime_UTR 45.0%
CTCTCTCTCTCTCTCTTTCT+AGG - chr1_2:3604242-3604261 Msa0050040:CDS 45.0%
CCCTACGATTCTCATGTGAA+AGG - chr1_2:3605040-3605059 Msa0050040:intron 45.0%
CCCTTTCACATGAGAATCGT+AGG + chr1_2:3605044-3605063 None:intergenic 45.0%
AGAGGGTAAATGACGAGTTC+GGG - chr1_2:3605483-3605502 Msa0050040:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG - chr1_2:3605498-3605517 Msa0050040:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG + chr1_2:3605498-3605517 None:intergenic 45.0%
CTAGAGGTAGGGTATAGAAG+AGG - chr1_2:3606389-3606408 Msa0050040:intron 45.0%
AGAGGTAGGGTATAGAAGAG+GGG - chr1_2:3606391-3606410 Msa0050040:intron 45.0%
AAAGAGAGGGGAGAAGAAGA+AGG - chr1_2:3606424-3606443 Msa0050040:intron 45.0%
GTGGACCTCGTGTTATAAGT+TGG + chr1_2:3606464-3606483 None:intergenic 45.0%
ATAACACGAGGTCCACGATT+TGG - chr1_2:3606468-3606487 Msa0050040:intron 45.0%
TACGCCTGTAAGAAGATCAC+TGG + chr1_2:3606816-3606835 None:intergenic 45.0%
AGTGATCTTCTTACAGGCGT+AGG - chr1_2:3606815-3606834 Msa0050040:intron 45.0%
! ACCGCTATTTGTGGTGTCAA+AGG + chr1_2:3606869-3606888 None:intergenic 45.0%
AAAATTGACCCTAGTGTGGG+TGG - chr1_2:3606964-3606983 Msa0050040:intron 45.0%
TGTGATGGCACACATCCAAT+TGG + chr1_2:3607626-3607645 None:intergenic 45.0%
GGATTCAAAGTTGTGGACAG+AGG - chr1_2:3608199-3608218 Msa0050040:intron 45.0%
!!! AAAATAATTAAAAGTTTTTT+TGG + chr1_2:3604952-3604971 None:intergenic 5.0%
!! TTAAATTAAAAAACAATAAA+AGG + chr1_2:3605687-3605706 None:intergenic 5.0%
!!! AGATATATTTAAAATTTATA+AGG - chr1_2:3606908-3606927 Msa0050040:intron 5.0%
GTTGGAGGAGCTAGCTAGTA+TGG - chr1_2:3603839-3603858 Msa0050040:three_prime_UTR 50.0%
TTTCAAGGTGGTGTCCCAAC+TGG - chr1_2:3604074-3604093 Msa0050040:three_prime_UTR 50.0%
GGGTTTGGATGCAAGACATG+TGG - chr1_2:3605544-3605563 Msa0050040:intron 50.0%
GGGTTTGGATGCAAGACATG+TGG + chr1_2:3605544-3605563 None:intergenic 50.0%
! GGGTGGTGGTATGAAAGAGA+GGG - chr1_2:3606411-3606430 Msa0050040:intron 50.0%
! GGTGGTGGTATGAAAGAGAG+GGG - chr1_2:3606412-3606431 Msa0050040:intron 50.0%
AGGATCGTATCCTGAAGCTC+CGG + chr1_2:3606849-3606868 None:intergenic 50.0%
GTACTGAGTGCACCACCAAT+TGG - chr1_2:3607608-3607627 Msa0050040:intron 50.0%
GATGGCACACATCCAATTGG+TGG + chr1_2:3607623-3607642 None:intergenic 50.0%
CCTGCAAGAGTTCTCTGTGA+TGG + chr1_2:3607641-3607660 None:intergenic 50.0%
CCATCACAGAGAACTCTTGC+AGG - chr1_2:3607638-3607657 Msa0050040:intron 50.0%
TCACAGAGAACTCTTGCAGG+AGG - chr1_2:3607641-3607660 Msa0050040:intron 50.0%
CACAGAGAACTCTTGCAGGA+GGG - chr1_2:3607642-3607661 Msa0050040:intron 50.0%
GTCAGAACTCACCCAATAGC+AGG - chr1_2:3607747-3607766 Msa0050040:intron 50.0%
GTTGTGGACAGAGGTTGTTG+TGG - chr1_2:3608208-3608227 Msa0050040:intron 50.0%
ACAGAGGTTGTTGTGGCACA+GGG - chr1_2:3608215-3608234 Msa0050040:intron 50.0%
TTGTGGCACAGGGAAACTAG+AGG - chr1_2:3608225-3608244 Msa0050040:intron 50.0%
GGTAGGGTATAGAAGAGGGG+TGG - chr1_2:3606394-3606413 Msa0050040:intron 55.0%
AGGGTATAGAAGAGGGGTGG+TGG - chr1_2:3606397-3606416 Msa0050040:intron 55.0%
! GGGGTGGTGGTATGAAAGAG+AGG - chr1_2:3606410-3606429 Msa0050040:intron 55.0%
ATCGTATCCTGAAGCTCCGG+AGG + chr1_2:3606846-3606865 None:intergenic 55.0%
GACAGAGGTTGTTGTGGCAC+AGG - chr1_2:3608214-3608233 Msa0050040:intron 55.0%
ACAGGCGTAGGCTTTGCCTC+CGG - chr1_2:3606827-3606846 Msa0050040:intron 60.0%
GGCTTTGCCTCCGGAGCTTC+AGG - chr1_2:3606836-3606855 Msa0050040:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3603786 3608713 3603786 ID=Msa0050040;Name=Msa0050040
chr1_2 mRNA 3603786 3608713 3603786 ID=Msa0050040-mRNA-1;Parent=Msa0050040;Name=Msa0050040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=72|1|1|1|1|1|5|323|361
chr1_2 exon 3603786 3604299 3603786 ID=Msa0050040-mRNA-1:exon:910;Parent=Msa0050040-mRNA-1
chr1_2 exon 3604669 3604924 3604669 ID=Msa0050040-mRNA-1:exon:909;Parent=Msa0050040-mRNA-1
chr1_2 exon 3605222 3605452 3605222 ID=Msa0050040-mRNA-1:exon:908;Parent=Msa0050040-mRNA-1
chr1_2 exon 3605613 3605743 3605613 ID=Msa0050040-mRNA-1:exon:907;Parent=Msa0050040-mRNA-1
chr1_2 exon 3608365 3608713 3608365 ID=Msa0050040-mRNA-1:exon:906;Parent=Msa0050040-mRNA-1
chr1_2 five_prime_UTR 3608642 3608713 3608642 ID=Msa0050040-mRNA-1:five_prime_utr;Parent=Msa0050040-mRNA-1
chr1_2 CDS 3608365 3608641 3608365 ID=Msa0050040-mRNA-1:cds;Parent=Msa0050040-mRNA-1
chr1_2 CDS 3605613 3605743 3605613 ID=Msa0050040-mRNA-1:cds;Parent=Msa0050040-mRNA-1
chr1_2 CDS 3605222 3605452 3605222 ID=Msa0050040-mRNA-1:cds;Parent=Msa0050040-mRNA-1
chr1_2 CDS 3604669 3604924 3604669 ID=Msa0050040-mRNA-1:cds;Parent=Msa0050040-mRNA-1
chr1_2 CDS 3604109 3604299 3604109 ID=Msa0050040-mRNA-1:cds;Parent=Msa0050040-mRNA-1
chr1_2 three_prime_UTR 3603786 3604108 3603786 ID=Msa0050040-mRNA-1:three_prime_utr;Parent=Msa0050040-mRNA-1
Gene Sequence

>Msa0050040

ATGGTGCAGCTCACAACTTCTCCAATGACTACTTCATTTCTGATCCGTTTCATTGTATTATTTGCATTGTGCTACAAAACGAAGGGTTTGATAAAGCTTCCACCAAATGTTACAGTTCCAGCAGTGATAGCATTTGGAGATTCAATAGTTGATTCAGGAAACAATAACGACCTCAAAACTTTGGTCAAATGCAATTTCCCTCCTTATGGCAAAGATTTTCAAGGTGGTGTCCCAACTGGTCGATTTTGCAATGGAAAAATCCCCTCAGATATACTTGCTGAACAATTGGGTATCAAGGAGTATGTACCTGCATATTTGGATCCAAATCTCAAATCCAGTGATCTTCTTACAGGCGTAGGCTTTGCCTCCGGAGCTTCAGGATACGATCCTTTGACACCACAAATAGCGTCAGTAATACCATTATCTGCTCAACTAGACATGTTCAAAGAATACATTGGGAAGTTGAAAGGAATTGTTGGTGAGGAAAGAACAAACTTCATACTGGCCAATAGTCTTTTTGTTTTGGTGGGAGGTAGTGACGACATTGCCAACACCTATTATGTTGTTCATGCCAGATTGCAATATGACATTCCTGCTTACACTGATCTTATGTCCAACTCAGCCACTAATTTTGTAAAGGAAATATATAAACTTGGAGCTCGTAGAATTGCTGTACTGAGTGCACCACCAATTGGATGTGTGCCATCACAGAGAACTCTTGCAGGAGGGATAGTAAGAGAGTGTGCAGAAAAGTATAATGATGCAGCAAAGTTATTCAACTCAAAACTCTCAAAGCAGCTTGATTCTCTAAGTCAGAACTCACCCAATAGCAGGATAGTTTATATTGATGTTTACGCTCCTCTACTTGATATCATTGTCAACTACCAAAAATATGGATTCAAAGTTGTGGACAGAGGTTGTTGTGGCACAGGGAAACTAGAGGTTGCAGTGTTATGCAACCCTTTAGATGCTACTTGTTCTGATGCTTCAGAATACGTCTTTTGGGATAGTTATCATCCTACAGAACGAGCATATAGAAAGCTCGTAGATTCAGTCCTTGAAAGATATTTGAGCAGATTGATATGA

Protein sequence

>Msa0050040

MVQLTTSPMTTSFLIRFIVLFALCYKTKGLIKLPPNVTVPAVIAFGDSIVDSGNNNDLKTLVKCNFPPYGKDFQGGVPTGRFCNGKIPSDILAEQLGIKEYVPAYLDPNLKSSDLLTGVGFASGASGYDPLTPQIASVIPLSAQLDMFKEYIGKLKGIVGEERTNFILANSLFVLVGGSDDIANTYYVVHARLQYDIPAYTDLMSNSATNFVKEIYKLGARRIAVLSAPPIGCVPSQRTLAGGIVRECAEKYNDAAKLFNSKLSKQLDSLSQNSPNSRIVYIDVYAPLLDIIVNYQKYGFKVVDRGCCGTGKLEVAVLCNPLDATCSDASEYVFWDSYHPTERAYRKLVDSVLERYLSRLI*