Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709040 | XP_003620882.1 | 90.643 | 513 | 47 | 1 | 1 | 513 | 1 | 512 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709040 | G7KJ82 | 90.643 | 513 | 47 | 1 | 1 | 513 | 1 | 512 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019390 | Msa0709040 | 0.823224 | 1.554111e-53 | -8.615850e-47 |
| Msa0033950 | Msa0709040 | 0.843890 | 1.060751e-58 | -8.615850e-47 |
| Msa0034030 | Msa0709040 | 0.845796 | 3.247604e-59 | -8.615850e-47 |
| Msa0043660 | Msa0709040 | 0.831370 | 1.735185e-55 | -8.615850e-47 |
| Msa0054440 | Msa0709040 | 0.827156 | 1.827614e-54 | -8.615850e-47 |
| Msa0054480 | Msa0709040 | 0.803944 | 2.737762e-49 | -8.615850e-47 |
| Msa0067630 | Msa0709040 | 0.826744 | 2.292588e-54 | -8.615850e-47 |
| Msa0070700 | Msa0709040 | 0.822077 | 2.872896e-53 | -8.615850e-47 |
| Msa0075500 | Msa0709040 | 0.826183 | 3.119489e-54 | -8.615850e-47 |
| Msa0079820 | Msa0709040 | 0.826202 | 3.088336e-54 | -8.615850e-47 |
| Msa0090080 | Msa0709040 | 0.802963 | 4.371700e-49 | -8.615850e-47 |
| Msa0094470 | Msa0709040 | 0.804881 | 1.745847e-49 | -8.615850e-47 |
| Msa0105620 | Msa0709040 | 0.826834 | 2.182913e-54 | -8.615850e-47 |
| Msa0115130 | Msa0709040 | 0.836490 | 9.074397e-57 | -8.615850e-47 |
| Msa0118590 | Msa0709040 | 0.832226 | 1.066668e-55 | -8.615850e-47 |
| Msa0605000 | Msa0709040 | 0.863175 | 3.001785e-64 | -8.615850e-47 |
| Msa0660850 | Msa0709040 | 0.818420 | 1.978660e-52 | -8.615850e-47 |
| Msa0685140 | Msa0709040 | 0.865430 | 5.939492e-65 | -8.615850e-47 |
| Msa0689260 | Msa0709040 | 0.833456 | 5.277859e-56 | -8.615850e-47 |
| Msa0691290 | Msa0709040 | 0.814841 | 1.254336e-51 | -8.615850e-47 |
| Msa0709040 | Msa0711780 | 0.830031 | 3.691933e-55 | -8.615850e-47 |
| Msa0709040 | Msa0715650 | 0.844485 | 7.343000e-59 | -8.615850e-47 |
| Msa0709040 | Msa0715700 | 0.804293 | 2.316133e-49 | -8.615850e-47 |
| Msa0709040 | Msa0719420 | 0.823249 | 1.533483e-53 | -8.615850e-47 |
| Msa0709040 | Msa0719610 | 0.808043 | 3.758700e-50 | -8.615850e-47 |
| Msa0709040 | Msa0753140 | 0.800856 | 1.184544e-48 | -8.615850e-47 |
| Msa0709040 | Msa0757940 | 0.812862 | 3.424880e-51 | -8.615850e-47 |
| Msa0709040 | Msa0763330 | 0.840311 | 9.386343e-58 | -8.615850e-47 |
| Msa0709040 | Msa0772480 | 0.845516 | 3.868417e-59 | -8.615850e-47 |
| Msa0709040 | Msa0789680 | 0.826303 | 2.921294e-54 | -8.615850e-47 |
| Msa0709040 | Msa0794670 | 0.815994 | 6.948990e-52 | -8.615850e-47 |
| Msa0709040 | Msa0798440 | 0.841444 | 4.734325e-58 | -8.615850e-47 |
| Msa0709040 | Msa0799260 | 0.832312 | 1.015460e-55 | -8.615850e-47 |
| Msa0709040 | Msa0799310 | 0.825621 | 4.242320e-54 | -8.615850e-47 |
| Msa0709040 | Msa0802410 | 0.827950 | 1.178534e-54 | -8.615850e-47 |
| Msa0709040 | Msa0830040 | 0.822133 | 2.788278e-53 | -8.615850e-47 |
| Msa0709040 | Msa0830540 | 0.834071 | 3.705703e-56 | -8.615850e-47 |
| Msa0709040 | Msa0869130 | 0.830028 | 3.697326e-55 | -8.615850e-47 |
| Msa0709040 | Msa0879540 | 0.804904 | 1.726489e-49 | -8.615850e-47 |
| Msa0709040 | Msa0901470 | 0.828937 | 6.807894e-55 | -8.615850e-47 |
| Msa0709040 | Msa0909950 | 0.823569 | 1.290450e-53 | -8.615850e-47 |
| Msa0709040 | Msa0925770 | 0.825757 | 3.938720e-54 | -8.615850e-47 |
| Msa0709040 | Msa0933300 | 0.800054 | 1.725444e-48 | -8.615850e-47 |
| Msa0709040 | Msa0945440 | 0.864304 | 1.339347e-64 | -8.615850e-47 |
| Msa0709040 | Msa0989540 | 0.826696 | 2.355056e-54 | -8.615850e-47 |
| Msa0709040 | Msa1001370 | 0.813935 | 1.989209e-51 | -8.615850e-47 |
| Msa0709040 | Msa1051200 | 0.808725 | 2.689966e-50 | -8.615850e-47 |
| Msa0709040 | Msa1083560 | 0.813145 | 2.968554e-51 | -8.615850e-47 |
| Msa0709040 | Msa1128570 | 0.856788 | 2.538640e-62 | -8.615850e-47 |
| Msa0709040 | Msa1137700 | 0.821688 | 3.534163e-53 | -8.615850e-47 |
| Msa0709040 | Msa1153060 | 0.829548 | 4.841033e-55 | -8.615850e-47 |
| Msa0709040 | Msa1160590 | 0.807741 | 4.358549e-50 | -8.615850e-47 |
| Msa0709040 | Msa1197320 | 0.800911 | 1.154327e-48 | -8.615850e-47 |
| Msa0709040 | Msa1209200 | 0.804591 | 2.007453e-49 | -8.615850e-47 |
| Msa0709040 | Msa1209260 | 0.834072 | 3.702111e-56 | -8.615850e-47 |
| Msa0709040 | Msa1209760 | 0.825120 | 5.573695e-54 | -8.615850e-47 |
| Msa0709040 | Msa1218730 | 0.803467 | 3.438768e-49 | -8.615850e-47 |
| Msa0709040 | Msa1224810 | 0.838940 | 2.132930e-57 | -8.615850e-47 |
| Msa0709040 | Msa1245930 | 0.801336 | 9.448622e-49 | -8.615850e-47 |
| Msa0709040 | Msa1250790 | 0.811316 | 7.441333e-51 | -8.615850e-47 |
| Msa0709040 | Msa1259060 | 0.803051 | 4.192240e-49 | -8.615850e-47 |
| Msa0709040 | Msa1358250 | 0.837449 | 5.164483e-57 | -8.615850e-47 |
| Msa0709040 | Msa1392780 | 0.811793 | 5.862191e-51 | -8.615850e-47 |
| Msa0709040 | Msa1394290 | 0.815854 | 7.469074e-52 | -8.615850e-47 |
| Msa0709040 | Msa1400220 | 0.845291 | 4.449431e-59 | -8.615850e-47 |
| Msa0709040 | Msa1400580 | 0.804142 | 2.489465e-49 | -8.615850e-47 |
| Msa0709040 | Msa1403420 | 0.804200 | 2.421252e-49 | -8.615850e-47 |
| Msa0709040 | Msa1411750 | 0.822996 | 1.756379e-53 | -8.615850e-47 |
| Msa0709040 | Msa1419870 | 0.804276 | 2.334721e-49 | -8.615850e-47 |
| Msa0709040 | Msa1457920 | 0.835432 | 1.684095e-56 | -8.615850e-47 |
| Msa0123360 | Msa0709040 | 0.801388 | 9.220214e-49 | -8.615850e-47 |
| Msa0127020 | Msa0709040 | 0.804242 | 2.373194e-49 | -8.615850e-47 |
| Msa0127390 | Msa0709040 | 0.818244 | 2.168489e-52 | -8.615850e-47 |
| Msa0128050 | Msa0709040 | 0.813528 | 2.445951e-51 | -8.615850e-47 |
| Msa0137550 | Msa0709040 | 0.848174 | 7.252280e-60 | -8.615850e-47 |
| Msa0144370 | Msa0709040 | 0.842392 | 2.660066e-58 | -8.615850e-47 |
| Msa0146770 | Msa0709040 | 0.821805 | 3.321414e-53 | -8.615850e-47 |
| Msa0159170 | Msa0709040 | 0.852452 | 4.573227e-61 | -8.615850e-47 |
| Msa0165660 | Msa0709040 | 0.810060 | 1.390980e-50 | -8.615850e-47 |
| Msa0168230 | Msa0709040 | 0.837570 | 4.809171e-57 | -8.615850e-47 |
| Msa0169280 | Msa0709040 | 0.803957 | 2.719951e-49 | -8.615850e-47 |
| Msa0189300 | Msa0709040 | 0.818651 | 1.753444e-52 | -8.615850e-47 |
| Msa0220720 | Msa0709040 | 0.811299 | 7.505304e-51 | -8.615850e-47 |
| Msa0231660 | Msa0709040 | 0.820774 | 5.742237e-53 | -8.615850e-47 |
| Msa0388700 | Msa0709040 | 0.802303 | 5.981680e-49 | -8.615850e-47 |
| Msa0422840 | Msa0709040 | 0.807010 | 6.227174e-50 | -8.615850e-47 |
| Msa0422920 | Msa0709040 | 0.805347 | 1.394875e-49 | -8.615850e-47 |
| Msa0446050 | Msa0709040 | 0.809733 | 1.635472e-50 | -8.615850e-47 |
| Msa0482130 | Msa0709040 | 0.813909 | 2.015818e-51 | -8.615850e-47 |
| Msa0309750 | Msa0709040 | 0.822844 | 1.906193e-53 | -8.615850e-47 |
| Msa0325590 | Msa0709040 | 0.824435 | 8.085641e-54 | -8.615850e-47 |
| Msa0489410 | Msa0709040 | 0.800484 | 1.410293e-48 | -8.615850e-47 |
| Msa0542090 | Msa0709040 | 0.867363 | 1.445917e-65 | -8.615850e-47 |
| Msa0542130 | Msa0709040 | 0.869811 | 2.339668e-66 | -8.615850e-47 |
| Msa0554290 | Msa0709040 | 0.816251 | 6.090552e-52 | -8.615850e-47 |
| Msa0566100 | Msa0709040 | 0.848897 | 4.571904e-60 | -8.615850e-47 |
| Msa0573140 | Msa0709040 | 0.808136 | 3.592589e-50 | -8.615850e-47 |
| Msa0581280 | Msa0709040 | 0.806022 | 1.006485e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709040 | MtrunA17_Chr6g0488071 | 90.643 | 513 | 47 | 1 | 1 | 513 | 1 | 512 | 0.0 | 875 |
| Msa0709040 | MtrunA17_Chr6g0488141 | 77.626 | 514 | 45 | 4 | 1 | 513 | 1 | 445 | 0.0 | 709 |
| Msa0709040 | MtrunA17_Chr6g0488291 | 90.909 | 275 | 23 | 1 | 1 | 273 | 1 | 275 | 1.18e-163 | 465 |
| Msa0709040 | MtrunA17_Chr1g0151731 | 32.673 | 404 | 241 | 8 | 14 | 397 | 14 | 406 | 1.94e-55 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709040 | AT5G11780.1 | 27.992 | 493 | 290 | 18 | 18 | 483 | 21 | 475 | 2.38e-42 | 158 |
Find 102 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATGGAAATCACAAATT+TGG | 0.169385 | 5_1:+3247 | Msa0709040:exon |
| TAAGCATCTGAATCTGAATT+TGG | 0.212727 | 5_1:-5923 | None:intergenic |
| AGACTTTCATGTTGGTTATT+TGG | 0.219723 | 5_1:+3853 | Msa0709040:CDS |
| GTCTATTCTGCAATCAAATT+TGG | 0.229642 | 5_1:+3428 | Msa0709040:CDS |
| GGTTGCAGAAAATCTCTTAA+AGG | 0.230767 | 5_1:+3449 | Msa0709040:CDS |
| AGGCAGGCTGTAACAAATTT+TGG | 0.231723 | 5_1:+6093 | Msa0709040:three_prime_UTR |
| TGAATGATTTGGCTCGTCTT+TGG | 0.239540 | 5_1:+3738 | Msa0709040:CDS |
| AGAAAATTCAGGGGATTCTT+TGG | 0.242463 | 5_1:-3339 | None:intergenic |
| GAATGATTTGGCTCGTCTTT+GGG | 0.283844 | 5_1:+3739 | Msa0709040:CDS |
| TGAGGATCCATTTGCCTTGC+CGG | 0.285447 | 5_1:-5396 | None:intergenic |
| GCTTGTTCAGCTTCTGTTAG+TGG | 0.286482 | 5_1:+3524 | Msa0709040:CDS |
| TCTTTGGTTGATATGATTCT+TGG | 0.304559 | 5_1:+3653 | Msa0709040:CDS |
| AATTATTTGTGAAGGTAAAT+TGG | 0.321645 | 5_1:-5336 | None:intergenic |
| GTCCCACCTTTGACAGGAAC+AGG | 0.338931 | 5_1:-5854 | None:intergenic |
| ACCTTCACAAATAATTAAAC+TGG | 0.339310 | 5_1:+5343 | Msa0709040:CDS |
| TATGATACATAGTGTGGTTA+AGG | 0.342249 | 5_1:+3583 | Msa0709040:CDS |
| ATCAAAAGATGGGTCAAGTT+TGG | 0.348170 | 5_1:-3396 | None:intergenic |
| AGACGGAGATACGAGGGTTT+TGG | 0.348813 | 5_1:-3220 | None:intergenic |
| ATGTGGCTGTAGAGTATCTT+AGG | 0.354901 | 5_1:+5156 | Msa0709040:CDS |
| TCAATGGAATGAGAAAATTC+AGG | 0.355310 | 5_1:-3350 | None:intergenic |
| TGAAGAGAAAGATTTGGATT+TGG | 0.356237 | 5_1:+3706 | Msa0709040:CDS |
| AATTTCTGAAGAGAAAGATT+TGG | 0.357567 | 5_1:+3700 | Msa0709040:CDS |
| AGGAACAGTTTGAATTGAAA+AGG | 0.358615 | 5_1:+3603 | Msa0709040:CDS |
| AATGAAGGAAGTGAAATCTT+TGG | 0.369502 | 5_1:+3637 | Msa0709040:CDS |
| GGGAATGGAAAAGGGTGAAT+TGG | 0.370113 | 5_1:+3931 | Msa0709040:CDS |
| TTTGCCTCTGAACTCAATAC+TGG | 0.387425 | 5_1:+4784 | Msa0709040:CDS |
| CCGGCTGCTGGTACTTTAGA+TGG | 0.394377 | 5_1:+5623 | Msa0709040:CDS |
| CTTTGGTTGATATGATTCTT+GGG | 0.402702 | 5_1:+3654 | Msa0709040:CDS |
| GAAAATTCAGGGGATTCTTT+GGG | 0.405005 | 5_1:-3338 | None:intergenic |
| TTTGTTTGATGCTGTACTAT+TGG | 0.406192 | 5_1:+5061 | Msa0709040:CDS |
| ATGTCTTGACATTTCACAAC+TGG | 0.411923 | 5_1:+5595 | Msa0709040:CDS |
| GGAACAGTTTGAATTGAAAA+GGG | 0.418531 | 5_1:+3604 | Msa0709040:CDS |
| CGTCACTAATCAATTTACTT+TGG | 0.425766 | 5_1:-5718 | None:intergenic |
| GAAAATGCCGGCAAGGCAAA+TGG | 0.429113 | 5_1:+5389 | Msa0709040:CDS |
| TACATGATGGGAGGTCTTAG+AGG | 0.431045 | 5_1:+5995 | Msa0709040:three_prime_UTR |
| TATCTCCGTCTTTGTTCTCA+TGG | 0.439243 | 5_1:+3232 | Msa0709040:exon |
| TTTCATGTTGGTTATTTGGC+TGG | 0.443028 | 5_1:+3857 | Msa0709040:CDS |
| CACATGTGTAATAATCAATC+TGG | 0.443588 | 5_1:-5138 | None:intergenic |
| CATGACAAAATTTAAATATG+AGG | 0.444705 | 5_1:-6038 | None:intergenic |
| GATGTTTGTGGTTGGATTTG+TGG | 0.446199 | 5_1:+3827 | Msa0709040:CDS |
| AATGAAAGTCGAAAACGAAA+AGG | 0.455565 | 5_1:+5779 | Msa0709040:CDS |
| TGAGTAGTGATGTTTGTGGT+TGG | 0.458478 | 5_1:+3819 | Msa0709040:CDS |
| CAGTTCATGTAATGCATCAA+TGG | 0.462532 | 5_1:-3366 | None:intergenic |
| CAACTGGAGCCACCGGCTGC+TGG | 0.468422 | 5_1:+5611 | Msa0709040:CDS |
| AGCCAACACTCCAACTCTTA+AGG | 0.469350 | 5_1:-3961 | None:intergenic |
| TTTGGCTGGTGCTGTTATGA+TGG | 0.474617 | 5_1:+3871 | Msa0709040:CDS |
| TGGAAATGTGCCTTAAGAGT+TGG | 0.477292 | 5_1:+3951 | Msa0709040:CDS |
| AAGGGAGAAGAAAGTAATGA+AGG | 0.479840 | 5_1:+3622 | Msa0709040:CDS |
| TACAATCAGAGGTTCTTATG+AGG | 0.479898 | 5_1:+4744 | Msa0709040:intron |
| TAGAATCATCTCTTATAGTA+AGG | 0.480176 | 5_1:+5301 | Msa0709040:CDS |
| TTTGATATGGGAATGGAAAA+GGG | 0.481409 | 5_1:+3923 | Msa0709040:CDS |
| TTGCTGCACCTTGAGAATCT+AGG | 0.490715 | 5_1:+5527 | Msa0709040:CDS |
| ACCAGTTTAATTATTTGTGA+AGG | 0.491766 | 5_1:-5344 | None:intergenic |
| CGACGATGATGATGCAAATG+AGG | 0.494007 | 5_1:+3772 | Msa0709040:CDS |
| ACCCACATCACATCAAAAGA+TGG | 0.500998 | 5_1:-3407 | None:intergenic |
| CAAAACCCTGTTCCTGTCAA+AGG | 0.504636 | 5_1:+5848 | Msa0709040:CDS |
| CAATGGAATGAGAAAATTCA+GGG | 0.509336 | 5_1:-3349 | None:intergenic |
| TACTTACTTATAAGTGCTCT+CGG | 0.514235 | 5_1:-5419 | None:intergenic |
| ACAAATTTGGTTCCTCATGT+TGG | 0.514732 | 5_1:+3260 | Msa0709040:CDS |
| GCTGAAGTCCCACCTTTGAC+AGG | 0.517501 | 5_1:-5860 | None:intergenic |
| TGCACTAAATCATCAAGCAC+AGG | 0.519280 | 5_1:-6070 | None:intergenic |
| AGATGAAAATGCAGGTGAGG+AGG | 0.519943 | 5_1:+5691 | Msa0709040:CDS |
| GTTTGATGCTGTACTATTGG+TGG | 0.526853 | 5_1:+5064 | Msa0709040:CDS |
| CATTTCACAACTGGAGCCAC+CGG | 0.534822 | 5_1:+5604 | Msa0709040:CDS |
| GCTGCGCAAACTATGAAGTC+GGG | 0.536847 | 5_1:+5752 | Msa0709040:CDS |
| CTTGTGAGTAGTGATGTTTG+TGG | 0.538129 | 5_1:+3815 | Msa0709040:CDS |
| ATGAAAGTCGAAAACGAAAA+GGG | 0.541860 | 5_1:+5780 | Msa0709040:CDS |
| AAGTGATGAGAGTGAAGTGC+AGG | 0.542405 | 5_1:+5898 | Msa0709040:CDS |
| AGCTGCGCAAACTATGAAGT+CGG | 0.544016 | 5_1:+5751 | Msa0709040:CDS |
| TTGATGATTTAGTGCAAGGC+AGG | 0.549968 | 5_1:+6077 | Msa0709040:three_prime_UTR |
| AAACTGGTTTCAAACCAGAA+TGG | 0.551672 | 5_1:+5359 | Msa0709040:CDS |
| TGTAATAATCAATCTGGTCA+AGG | 0.552695 | 5_1:-5132 | None:intergenic |
| AACCCTGTTCCTGTCAAAGG+TGG | 0.555661 | 5_1:+5851 | Msa0709040:CDS |
| GACGATGATGATGCAAATGA+GGG | 0.566547 | 5_1:+3773 | Msa0709040:CDS |
| TTCTGATAGAATTTCTTGCA+TGG | 0.570840 | 5_1:-3312 | None:intergenic |
| AATGGTATCGAGGAAAATGC+CGG | 0.571295 | 5_1:+5377 | Msa0709040:CDS |
| AGAAGATGAAAATGCAGGTG+AGG | 0.581395 | 5_1:+5688 | Msa0709040:CDS |
| TGTGGTATAGACTTTCATGT+TGG | 0.585968 | 5_1:+3845 | Msa0709040:CDS |
| TAATCAATCTGGTCAAGGCA+AGG | 0.590904 | 5_1:-5127 | None:intergenic |
| CCCACATCACATCAAAAGAT+GGG | 0.595174 | 5_1:-3406 | None:intergenic |
| CTCTAATTCCTAGATTCTCA+AGG | 0.598093 | 5_1:-5535 | None:intergenic |
| ACCCTGTTCCTGTCAAAGGT+GGG | 0.599711 | 5_1:+5852 | Msa0709040:CDS |
| CCATCTAAAGTACCAGCAGC+CGG | 0.601460 | 5_1:-5623 | None:intergenic |
| TGCCTTAAGAGTTGGAGTGT+TGG | 0.602128 | 5_1:+3959 | Msa0709040:CDS |
| GATTTCCATGAGAACAAAGA+CGG | 0.608393 | 5_1:-3237 | None:intergenic |
| GTGCTTGATGATTTAGTGCA+AGG | 0.616276 | 5_1:+6073 | Msa0709040:three_prime_UTR |
| TCCCACCTTTGACAGGAACA+GGG | 0.625909 | 5_1:-5853 | None:intergenic |
| GATGGTAAGATAACAGATGA+CGG | 0.628077 | 5_1:+5641 | Msa0709040:CDS |
| GTTGGAGAAGATGAAAATGC+AGG | 0.634820 | 5_1:+5683 | Msa0709040:CDS |
| TATCGAGGAAAATGCCGGCA+AGG | 0.638104 | 5_1:+5382 | Msa0709040:CDS |
| CAAACATCACTACTCACAAG+AGG | 0.646663 | 5_1:-3812 | None:intergenic |
| TTCAAACCAGAATGGTATCG+AGG | 0.654461 | 5_1:+5367 | Msa0709040:CDS |
| CAGATTGATTATTACACATG+TGG | 0.657009 | 5_1:+5139 | Msa0709040:CDS |
| AGAACAAAGACGGAGATACG+AGG | 0.665893 | 5_1:-3227 | None:intergenic |
| GCACTAAATCATCAAGCACA+GGG | 0.672051 | 5_1:-6069 | None:intergenic |
| CTAACCAGTATTGAGTTCAG+AGG | 0.672560 | 5_1:-4788 | None:intergenic |
| ACTTATAAGTGCTCTCGGTG+AGG | 0.679393 | 5_1:-5414 | None:intergenic |
| GAACAAAGACGGAGATACGA+GGG | 0.683687 | 5_1:-3226 | None:intergenic |
| AATGGAATGAGAAAATTCAG+GGG | 0.687354 | 5_1:-3348 | None:intergenic |
| AGGCAGTGAGAAGTTACATG+TGG | 0.701511 | 5_1:+6015 | Msa0709040:three_prime_UTR |
| TCTAAAGTACCAGCAGCCGG+TGG | 0.704066 | 5_1:-5620 | None:intergenic |
| ACGATGATGATGCAAATGAG+GGG | 0.709607 | 5_1:+3774 | Msa0709040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAGTATGTTTAATT+TGG | - | chr5_1:4657-4676 | None:intergenic | 10.0% |
| !! | ACATTATCTCAAATTATTAT+CGG | - | chr5_1:4414-4433 | None:intergenic | 15.0% |
| !! | ACTAATATCCATAAAAATAA+TGG | - | chr5_1:4896-4915 | None:intergenic | 15.0% |
| !!! | TTGTGTTTGTTTTTTGATAT+GGG | + | chr5_1:3911-3930 | Msa0709040:CDS | 20.0% |
| !!! | TTTAAGGTAAAATATGTAGT+AGG | - | chr5_1:4347-4366 | None:intergenic | 20.0% |
| !!! | TTAGTTATTGACTTATTGTA+TGG | + | chr5_1:5188-5207 | Msa0709040:intron | 20.0% |
| !! | AATTATTTGTGAAGGTAAAT+TGG | - | chr5_1:5339-5358 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTTCTAATATCTA+TGG | + | chr5_1:5444-5463 | Msa0709040:intron | 20.0% |
| !! | TTTCATAATTCATTCTAGAT+TGG | + | chr5_1:5504-5523 | Msa0709040:intron | 20.0% |
| !!! | ATGTTTTTACAATTACATGA+TGG | + | chr5_1:5982-6001 | Msa0709040:three_prime_UTR | 20.0% |
| !!! | TGTTTTTACAATTACATGAT+GGG | + | chr5_1:5983-6002 | Msa0709040:three_prime_UTR | 20.0% |
| !! | CATGACAAAATTTAAATATG+AGG | - | chr5_1:6041-6060 | None:intergenic | 20.0% |
| ! | CTATGTATCATAAAAACAAC+AGG | - | chr5_1:3575-3594 | None:intergenic | 25.0% |
| !!! | TGTTTTTATGATACATAGTG+TGG | + | chr5_1:3577-3596 | Msa0709040:CDS | 25.0% |
| !! | AATTTCTGAAGAGAAAGATT+TGG | + | chr5_1:3700-3719 | Msa0709040:CDS | 25.0% |
| !!! | GTTGTGTTTGTTTTTTGATA+TGG | + | chr5_1:3910-3929 | Msa0709040:CDS | 25.0% |
| !!! | TTTGTTTTTTGATATGGGAA+TGG | + | chr5_1:3916-3935 | Msa0709040:CDS | 25.0% |
| !!! | TTTCAGAATGTGTACTTTTT+GGG | + | chr5_1:3995-4014 | Msa0709040:CDS | 25.0% |
| !! | TCAATGTTTCATAGGTTTTA+AGG | - | chr5_1:4080-4099 | None:intergenic | 25.0% |
| ! | GTTGAATGTAACTATATCTT+TGG | + | chr5_1:4147-4166 | Msa0709040:intron | 25.0% |
| !! | CATAGCTTAAAACTTTTATC+TGG | + | chr5_1:4248-4267 | Msa0709040:intron | 25.0% |
| !! | TAAAACTTTTATCTGGATGA+TGG | + | chr5_1:4255-4274 | Msa0709040:intron | 25.0% |
| !!! | ATCAGTGTTTCATAGTTTTA+AGG | - | chr5_1:4363-4382 | None:intergenic | 25.0% |
| !! | ACATAGCTTAACTTTTTATC+TGG | + | chr5_1:4485-4504 | Msa0709040:intron | 25.0% |
| !! | TTAACTTTTTATCTGGATGA+GGG | + | chr5_1:4492-4511 | Msa0709040:intron | 25.0% |
| !! | TTTTGCTAAAAGCTATACTT+TGG | - | chr5_1:4584-4603 | None:intergenic | 25.0% |
| !! | TTTATCTTTTGTACAATCAG+AGG | + | chr5_1:4733-4752 | Msa0709040:intron | 25.0% |
| ! | GCAGATATGAATAAATAACA+AGG | - | chr5_1:4822-4841 | None:intergenic | 25.0% |
| !! | TTAGACATTTTTGCAATACA+CGG | - | chr5_1:4871-4890 | None:intergenic | 25.0% |
| !!! | GTCTAACACCATTATTTTTA+TGG | + | chr5_1:4885-4904 | Msa0709040:intron | 25.0% |
| ! | TGAAGCATAATTTCTGTTAA+TGG | + | chr5_1:5253-5272 | Msa0709040:intron | 25.0% |
| ! | TAGAATCATCTCTTATAGTA+AGG | + | chr5_1:5301-5320 | Msa0709040:CDS | 25.0% |
| ! | ACCTTCACAAATAATTAAAC+TGG | + | chr5_1:5343-5362 | Msa0709040:CDS | 25.0% |
| ! | ACCAGTTTAATTATTTGTGA+AGG | - | chr5_1:5347-5366 | None:intergenic | 25.0% |
| ! | AATATCTATGGTTTCAGAAA+TGG | + | chr5_1:5456-5475 | Msa0709040:intron | 25.0% |
| TCTCATGGAAATCACAAATT+TGG | + | chr5_1:3247-3266 | Msa0709040:exon | 30.0% | |
| TTCTGATAGAATTTCTTGCA+TGG | - | chr5_1:3315-3334 | None:intergenic | 30.0% | |
| AATGGAATGAGAAAATTCAG+GGG | - | chr5_1:3351-3370 | None:intergenic | 30.0% | |
| CAATGGAATGAGAAAATTCA+GGG | - | chr5_1:3352-3371 | None:intergenic | 30.0% | |
| TCAATGGAATGAGAAAATTC+AGG | - | chr5_1:3353-3372 | None:intergenic | 30.0% | |
| GTCTATTCTGCAATCAAATT+TGG | + | chr5_1:3428-3447 | Msa0709040:CDS | 30.0% | |
| TATGATACATAGTGTGGTTA+AGG | + | chr5_1:3583-3602 | Msa0709040:CDS | 30.0% | |
| AGGAACAGTTTGAATTGAAA+AGG | + | chr5_1:3603-3622 | Msa0709040:CDS | 30.0% | |
| GGAACAGTTTGAATTGAAAA+GGG | + | chr5_1:3604-3623 | Msa0709040:CDS | 30.0% | |
| AATGAAGGAAGTGAAATCTT+TGG | + | chr5_1:3637-3656 | Msa0709040:CDS | 30.0% | |
| ! | TCTTTGGTTGATATGATTCT+TGG | + | chr5_1:3653-3672 | Msa0709040:CDS | 30.0% |
| ! | CTTTGGTTGATATGATTCTT+GGG | + | chr5_1:3654-3673 | Msa0709040:CDS | 30.0% |
| TGAAGAGAAAGATTTGGATT+TGG | + | chr5_1:3706-3725 | Msa0709040:CDS | 30.0% | |
| !! | GGTTTTGTCTTTGAATGATT+TGG | + | chr5_1:3727-3746 | Msa0709040:CDS | 30.0% |
| ! | AGACTTTCATGTTGGTTATT+TGG | + | chr5_1:3853-3872 | Msa0709040:CDS | 30.0% |
| ! | TTTTGATATGGGAATGGAAA+AGG | + | chr5_1:3922-3941 | Msa0709040:CDS | 30.0% |
| TTTGATATGGGAATGGAAAA+GGG | + | chr5_1:3923-3942 | Msa0709040:CDS | 30.0% | |
| ! | CTTTCAGAATGTGTACTTTT+TGG | + | chr5_1:3994-4013 | Msa0709040:CDS | 30.0% |
| !!! | GGTGAGGTTTATTTTGTTTT+TGG | + | chr5_1:4016-4035 | Msa0709040:intron | 30.0% |
| TGTCAGTATCAATGTTTCAT+AGG | - | chr5_1:4088-4107 | None:intergenic | 30.0% | |
| CTTCACATTGAATGTACATT+CGG | - | chr5_1:4217-4236 | None:intergenic | 30.0% | |
| GTACATTCAATGTGAAGTAA+TGG | + | chr5_1:4220-4239 | Msa0709040:intron | 30.0% | |
| ! | ATTCCATTCAATGCACTTTT+TGG | + | chr5_1:4282-4301 | Msa0709040:intron | 30.0% |
| !! | TTCCATTCAATGCACTTTTT+GGG | + | chr5_1:4283-4302 | Msa0709040:intron | 30.0% |
| ! | CTTAACTTTTTATCTGGATG+AGG | + | chr5_1:4491-4510 | Msa0709040:intron | 30.0% |
| ! | TTAATTTGGTCTGTCTGAAT+TGG | - | chr5_1:4643-4662 | None:intergenic | 30.0% |
| ! | GTGTTGTTCTTTGTTTAATG+TGG | + | chr5_1:4709-4728 | Msa0709040:intron | 30.0% |
| ! | TAGACATTTTTGCAATACAC+GGG | - | chr5_1:4870-4889 | None:intergenic | 30.0% |
| ! | CCAAATGTTAACAGCTTTAA+TGG | - | chr5_1:4995-5014 | None:intergenic | 30.0% |
| CCATTAAAGCTGTTAACATT+TGG | + | chr5_1:4992-5011 | Msa0709040:intron | 30.0% | |
| TTTGTTTGATGCTGTACTAT+TGG | + | chr5_1:5061-5080 | Msa0709040:CDS | 30.0% | |
| TGTAATAATCAATCTGGTCA+AGG | - | chr5_1:5135-5154 | None:intergenic | 30.0% | |
| CACATGTGTAATAATCAATC+TGG | - | chr5_1:5141-5160 | None:intergenic | 30.0% | |
| CAGATTGATTATTACACATG+TGG | + | chr5_1:5139-5158 | Msa0709040:CDS | 30.0% | |
| TTCTGTTAATGGTTTGATGT+AGG | + | chr5_1:5264-5283 | Msa0709040:intron | 30.0% | |
| TCTGTTAATGGTTTGATGTA+GGG | + | chr5_1:5265-5284 | Msa0709040:intron | 30.0% | |
| TACTTACTTATAAGTGCTCT+CGG | - | chr5_1:5422-5441 | None:intergenic | 30.0% | |
| ! | TCTAGGAATTAGAGTTTTTG+AGG | + | chr5_1:5544-5563 | Msa0709040:CDS | 30.0% |
| CAACATTGTCAACGTAAAAA+AGG | - | chr5_1:5667-5686 | None:intergenic | 30.0% | |
| !!! | CTTTTTTACGTTGACAATGT+TGG | + | chr5_1:5665-5684 | Msa0709040:CDS | 30.0% |
| CGTCACTAATCAATTTACTT+TGG | - | chr5_1:5721-5740 | None:intergenic | 30.0% | |
| AATGAAAGTCGAAAACGAAA+AGG | + | chr5_1:5779-5798 | Msa0709040:CDS | 30.0% | |
| ATGAAAGTCGAAAACGAAAA+GGG | + | chr5_1:5780-5799 | Msa0709040:CDS | 30.0% | |
| TAAGCATCTGAATCTGAATT+TGG | - | chr5_1:5926-5945 | None:intergenic | 30.0% | |
| !! | TTTTACAATTACATGATGGG+AGG | + | chr5_1:5986-6005 | Msa0709040:three_prime_UTR | 30.0% |
| !!! | ATACGAGGGTTTTGGTTTTT+TGG | - | chr5_1:3215-3234 | None:intergenic | 35.0% |
| GATTTCCATGAGAACAAAGA+CGG | - | chr5_1:3240-3259 | None:intergenic | 35.0% | |
| ! | ACAAATTTGGTTCCTCATGT+TGG | + | chr5_1:3260-3279 | Msa0709040:CDS | 35.0% |
| GAAAATTCAGGGGATTCTTT+GGG | - | chr5_1:3341-3360 | None:intergenic | 35.0% | |
| AGAAAATTCAGGGGATTCTT+TGG | - | chr5_1:3342-3361 | None:intergenic | 35.0% | |
| CAGTTCATGTAATGCATCAA+TGG | - | chr5_1:3369-3388 | None:intergenic | 35.0% | |
| ATCAAAAGATGGGTCAAGTT+TGG | - | chr5_1:3399-3418 | None:intergenic | 35.0% | |
| GGTTGCAGAAAATCTCTTAA+AGG | + | chr5_1:3449-3468 | Msa0709040:CDS | 35.0% | |
| AAGGGAGAAGAAAGTAATGA+AGG | + | chr5_1:3622-3641 | Msa0709040:CDS | 35.0% | |
| TGTGGTATAGACTTTCATGT+TGG | + | chr5_1:3845-3864 | Msa0709040:CDS | 35.0% | |
| ! | TTTCATGTTGGTTATTTGGC+TGG | + | chr5_1:3857-3876 | Msa0709040:CDS | 35.0% |
| ATTATCGGTCTTAATACGTG+TGG | - | chr5_1:4399-4418 | None:intergenic | 35.0% | |
| ATACCAACAATTCACACCAA+AGG | - | chr5_1:4464-4483 | None:intergenic | 35.0% | |
| !! | TGAGTTTGTTAAAATCACCG+TGG | + | chr5_1:4544-4563 | Msa0709040:intron | 35.0% |
| ! | TAGCTTTTAGCAAAATCACG+AGG | + | chr5_1:4589-4608 | Msa0709040:intron | 35.0% |
| TACAATCAGAGGTTCTTATG+AGG | + | chr5_1:4744-4763 | Msa0709040:intron | 35.0% | |
| ! | AAACTGGTTTCAAACCAGAA+TGG | + | chr5_1:5359-5378 | Msa0709040:CDS | 35.0% |
| CTCTAATTCCTAGATTCTCA+AGG | - | chr5_1:5538-5557 | None:intergenic | 35.0% | |
| ATGTCTTGACATTTCACAAC+TGG | + | chr5_1:5595-5614 | Msa0709040:CDS | 35.0% | |
| GATGGTAAGATAACAGATGA+CGG | + | chr5_1:5641-5660 | Msa0709040:CDS | 35.0% | |
| TATCTCCGTCTTTGTTCTCA+TGG | + | chr5_1:3232-3251 | Msa0709040:exon | 40.0% | |
| ! | GTGTAGTTTTCACCAACATG+AGG | - | chr5_1:3275-3294 | None:intergenic | 40.0% |
| !! | CATGGTGTTTTTCAGCTTCA+GGG | - | chr5_1:3297-3316 | None:intergenic | 40.0% |
| ! | ACCCATCTTTTGATGTGATG+TGG | + | chr5_1:3405-3424 | Msa0709040:CDS | 40.0% |
| CCCACATCACATCAAAAGAT+GGG | - | chr5_1:3409-3428 | None:intergenic | 40.0% | |
| ! | CCCATCTTTTGATGTGATGT+GGG | + | chr5_1:3406-3425 | Msa0709040:CDS | 40.0% |
| ACCCACATCACATCAAAAGA+TGG | - | chr5_1:3410-3429 | None:intergenic | 40.0% | |
| ! | TGAATGATTTGGCTCGTCTT+TGG | + | chr5_1:3738-3757 | Msa0709040:CDS | 40.0% |
| ! | GAATGATTTGGCTCGTCTTT+GGG | + | chr5_1:3739-3758 | Msa0709040:CDS | 40.0% |
| ! | GACGATGATGATGCAAATGA+GGG | + | chr5_1:3773-3792 | Msa0709040:CDS | 40.0% |
| ! | ACGATGATGATGCAAATGAG+GGG | + | chr5_1:3774-3793 | Msa0709040:CDS | 40.0% |
| CAAACATCACTACTCACAAG+AGG | - | chr5_1:3815-3834 | None:intergenic | 40.0% | |
| CTTGTGAGTAGTGATGTTTG+TGG | + | chr5_1:3815-3834 | Msa0709040:CDS | 40.0% | |
| TGAGTAGTGATGTTTGTGGT+TGG | + | chr5_1:3819-3838 | Msa0709040:CDS | 40.0% | |
| GATGTTTGTGGTTGGATTTG+TGG | + | chr5_1:3827-3846 | Msa0709040:CDS | 40.0% | |
| TGGAAATGTGCCTTAAGAGT+TGG | + | chr5_1:3951-3970 | Msa0709040:CDS | 40.0% | |
| !!! | GAATGTGTACTTTTTGGGTG+AGG | + | chr5_1:4000-4019 | Msa0709040:intron | 40.0% |
| TATCTTTGGATGTGTCGTGT+CGG | + | chr5_1:4161-4180 | Msa0709040:intron | 40.0% | |
| ! | CACCCAAAAAGTGCATTGAA+TGG | - | chr5_1:4288-4307 | None:intergenic | 40.0% |
| !!! | TTCAATGCACTTTTTGGGTG+AGG | + | chr5_1:4288-4307 | Msa0709040:intron | 40.0% |
| ! | ATTCACACCAAAGGCATATC+CGG | - | chr5_1:4455-4474 | None:intergenic | 40.0% |
| ! | ATGCCTTTGGTGTGAATTGT+TGG | + | chr5_1:4458-4477 | Msa0709040:intron | 40.0% |
| GGATGAATTCACTGTATGCT+TGG | + | chr5_1:4513-4532 | Msa0709040:intron | 40.0% | |
| TCACTGTATGCTTGGATTGA+CGG | + | chr5_1:4521-4540 | Msa0709040:intron | 40.0% | |
| ATTTGGTCTGTCTGAATTGG+CGG | - | chr5_1:4640-4659 | None:intergenic | 40.0% | |
| TTTGCCTCTGAACTCAATAC+TGG | + | chr5_1:4784-4803 | Msa0709040:CDS | 40.0% | |
| ! | CTAACCAGTATTGAGTTCAG+AGG | - | chr5_1:4791-4810 | None:intergenic | 40.0% |
| GTTTGATGCTGTACTATTGG+TGG | + | chr5_1:5064-5083 | Msa0709040:CDS | 40.0% | |
| ! | GGCAAGGCTTTTTATGTTCT+TGG | - | chr5_1:5114-5133 | None:intergenic | 40.0% |
| TAATCAATCTGGTCAAGGCA+AGG | - | chr5_1:5130-5149 | None:intergenic | 40.0% | |
| ! | ATGTGGCTGTAGAGTATCTT+AGG | + | chr5_1:5156-5175 | Msa0709040:CDS | 40.0% |
| TTCAAACCAGAATGGTATCG+AGG | + | chr5_1:5367-5386 | Msa0709040:CDS | 40.0% | |
| ! | CATTTTCCTCGATACCATTC+TGG | - | chr5_1:5376-5395 | None:intergenic | 40.0% |
| ! | AATGGTATCGAGGAAAATGC+CGG | + | chr5_1:5377-5396 | Msa0709040:CDS | 40.0% |
| GGTTTCAGAAATGGTACTCA+AGG | + | chr5_1:5465-5484 | Msa0709040:intron | 40.0% | |
| AAATGGTACTCAAGGAAGCA+CGG | + | chr5_1:5473-5492 | Msa0709040:intron | 40.0% | |
| GTTGGAGAAGATGAAAATGC+AGG | + | chr5_1:5683-5702 | Msa0709040:CDS | 40.0% | |
| AGAAGATGAAAATGCAGGTG+AGG | + | chr5_1:5688-5707 | Msa0709040:CDS | 40.0% | |
| GCACTAAATCATCAAGCACA+GGG | - | chr5_1:6072-6091 | None:intergenic | 40.0% | |
| TGCACTAAATCATCAAGCAC+AGG | - | chr5_1:6073-6092 | None:intergenic | 40.0% | |
| ! | GTGCTTGATGATTTAGTGCA+AGG | + | chr5_1:6073-6092 | Msa0709040:three_prime_UTR | 40.0% |
| ! | TTGATGATTTAGTGCAAGGC+AGG | + | chr5_1:6077-6096 | Msa0709040:three_prime_UTR | 40.0% |
| ! | AGGCAGGCTGTAACAAATTT+TGG | + | chr5_1:6093-6112 | Msa0709040:three_prime_UTR | 40.0% |
| GAACAAAGACGGAGATACGA+GGG | - | chr5_1:3229-3248 | None:intergenic | 45.0% | |
| AGAACAAAGACGGAGATACG+AGG | - | chr5_1:3230-3249 | None:intergenic | 45.0% | |
| !! | GCATGGTGTTTTTCAGCTTC+AGG | - | chr5_1:3298-3317 | None:intergenic | 45.0% |
| GCTTGTTCAGCTTCTGTTAG+TGG | + | chr5_1:3524-3543 | Msa0709040:CDS | 45.0% | |
| ! | CGACGATGATGATGCAAATG+AGG | + | chr5_1:3772-3791 | Msa0709040:CDS | 45.0% |
| !! | TTTGGCTGGTGCTGTTATGA+TGG | + | chr5_1:3871-3890 | Msa0709040:CDS | 45.0% |
| GGGAATGGAAAAGGGTGAAT+TGG | + | chr5_1:3931-3950 | Msa0709040:CDS | 45.0% | |
| TGCCTTAAGAGTTGGAGTGT+TGG | + | chr5_1:3959-3978 | Msa0709040:CDS | 45.0% | |
| AGCCAACACTCCAACTCTTA+AGG | - | chr5_1:3964-3983 | None:intergenic | 45.0% | |
| TGTGCGTCATTGACACACAT+CGG | + | chr5_1:4187-4206 | Msa0709040:intron | 45.0% | |
| GGTCTTAATACGTGTGGTGT+AGG | - | chr5_1:4393-4412 | None:intergenic | 45.0% | |
| TATCGATCCATGACGTGTAC+CGG | + | chr5_1:4433-4452 | Msa0709040:intron | 45.0% | |
| ! | TGGAGCATCACAAAACACCA+CGG | - | chr5_1:4564-4583 | None:intergenic | 45.0% |
| GTCTGAATTGGCGGTGAAAT+TGG | - | chr5_1:4631-4650 | None:intergenic | 45.0% | |
| ACTTATAAGTGCTCTCGGTG+AGG | - | chr5_1:5417-5436 | None:intergenic | 45.0% | |
| TTGCTGCACCTTGAGAATCT+AGG | + | chr5_1:5527-5546 | Msa0709040:CDS | 45.0% | |
| AGATGAAAATGCAGGTGAGG+AGG | + | chr5_1:5691-5710 | Msa0709040:CDS | 45.0% | |
| AGCTGCGCAAACTATGAAGT+CGG | + | chr5_1:5751-5770 | Msa0709040:CDS | 45.0% | |
| CAAAACCCTGTTCCTGTCAA+AGG | + | chr5_1:5848-5867 | Msa0709040:CDS | 45.0% | |
| AAGTGATGAGAGTGAAGTGC+AGG | + | chr5_1:5898-5917 | Msa0709040:CDS | 45.0% | |
| ! | TACATGATGGGAGGTCTTAG+AGG | + | chr5_1:5995-6014 | Msa0709040:three_prime_UTR | 45.0% |
| AGGCAGTGAGAAGTTACATG+TGG | + | chr5_1:6015-6034 | Msa0709040:three_prime_UTR | 45.0% | |
| ! | AGACGGAGATACGAGGGTTT+TGG | - | chr5_1:3223-3242 | None:intergenic | 50.0% |
| ACGTGTACCGGATATGCCTT+TGG | + | chr5_1:4445-4464 | Msa0709040:intron | 50.0% | |
| TATCGAGGAAAATGCCGGCA+AGG | + | chr5_1:5382-5401 | Msa0709040:CDS | 50.0% | |
| GAAAATGCCGGCAAGGCAAA+TGG | + | chr5_1:5389-5408 | Msa0709040:CDS | 50.0% | |
| TGAGGATCCATTTGCCTTGC+CGG | - | chr5_1:5399-5418 | None:intergenic | 50.0% | |
| CATTTCACAACTGGAGCCAC+CGG | + | chr5_1:5604-5623 | Msa0709040:CDS | 50.0% | |
| ! | CCATCTAAAGTACCAGCAGC+CGG | - | chr5_1:5626-5645 | None:intergenic | 50.0% |
| GCTGCGCAAACTATGAAGTC+GGG | + | chr5_1:5752-5771 | Msa0709040:CDS | 50.0% | |
| AACCCTGTTCCTGTCAAAGG+TGG | + | chr5_1:5851-5870 | Msa0709040:CDS | 50.0% | |
| ACCCTGTTCCTGTCAAAGGT+GGG | + | chr5_1:5852-5871 | Msa0709040:CDS | 50.0% | |
| TCCCACCTTTGACAGGAACA+GGG | - | chr5_1:5856-5875 | None:intergenic | 50.0% | |
| CTTTGGATGTGTCGTGTCGG+TGG | + | chr5_1:4164-4183 | Msa0709040:intron | 55.0% | |
| GGCATATCCGGTACACGTCA+TGG | - | chr5_1:4443-4462 | None:intergenic | 55.0% | |
| ! | TCTAAAGTACCAGCAGCCGG+TGG | - | chr5_1:5623-5642 | None:intergenic | 55.0% |
| CCGGCTGCTGGTACTTTAGA+TGG | + | chr5_1:5623-5642 | Msa0709040:CDS | 55.0% | |
| GTCCCACCTTTGACAGGAAC+AGG | - | chr5_1:5857-5876 | None:intergenic | 55.0% | |
| GCTGAAGTCCCACCTTTGAC+AGG | - | chr5_1:5863-5882 | None:intergenic | 55.0% | |
| ! | CAACTGGAGCCACCGGCTGC+TGG | + | chr5_1:5611-5630 | Msa0709040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 3190 | 6161 | 3190 | ID=Msa0709040;Name=Msa0709040 |
| chr5_1 | mRNA | 3190 | 6161 | 3190 | ID=Msa0709040-mRNA-1;Parent=Msa0709040;Name=Msa0709040-mRNA-1;_AED=0.33;_eAED=0.33;_QI=61|1|1|1|1|1|5|215|513 |
| chr5_1 | exon | 3190 | 4016 | 3190 | ID=Msa0709040-mRNA-1:exon:3;Parent=Msa0709040-mRNA-1 |
| chr5_1 | exon | 4753 | 4805 | 4753 | ID=Msa0709040-mRNA-1:exon:4;Parent=Msa0709040-mRNA-1 |
| chr5_1 | exon | 5029 | 5177 | 5029 | ID=Msa0709040-mRNA-1:exon:5;Parent=Msa0709040-mRNA-1 |
| chr5_1 | exon | 5286 | 5434 | 5286 | ID=Msa0709040-mRNA-1:exon:6;Parent=Msa0709040-mRNA-1 |
| chr5_1 | exon | 5522 | 6161 | 5522 | ID=Msa0709040-mRNA-1:exon:7;Parent=Msa0709040-mRNA-1 |
| chr5_1 | five_prime_UTR | 3190 | 3250 | 3190 | ID=Msa0709040-mRNA-1:five_prime_utr;Parent=Msa0709040-mRNA-1 |
| chr5_1 | CDS | 3251 | 4016 | 3251 | ID=Msa0709040-mRNA-1:cds;Parent=Msa0709040-mRNA-1 |
| chr5_1 | CDS | 4753 | 4805 | 4753 | ID=Msa0709040-mRNA-1:cds;Parent=Msa0709040-mRNA-1 |
| chr5_1 | CDS | 5029 | 5177 | 5029 | ID=Msa0709040-mRNA-1:cds;Parent=Msa0709040-mRNA-1 |
| chr5_1 | CDS | 5286 | 5434 | 5286 | ID=Msa0709040-mRNA-1:cds;Parent=Msa0709040-mRNA-1 |
| chr5_1 | CDS | 5522 | 5946 | 5522 | ID=Msa0709040-mRNA-1:cds;Parent=Msa0709040-mRNA-1 |
| chr5_1 | three_prime_UTR | 5947 | 6161 | 5947 | ID=Msa0709040-mRNA-1:three_prime_utr;Parent=Msa0709040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
