Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127390 | XP_003591058.1 | 92.929 | 297 | 9 | 2 | 1 | 288 | 1 | 294 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127390 | G7I7H3 | 92.929 | 297 | 9 | 2 | 1 | 288 | 1 | 294 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000100 | Msa0127390 | 0.810852 | 9.382308e-51 | -8.615850e-47 |
| Msa0019390 | Msa0127390 | 0.815999 | 6.931322e-52 | -8.615850e-47 |
| Msa0022970 | Msa0127390 | 0.827210 | 1.774329e-54 | -8.615850e-47 |
| Msa0032090 | Msa0127390 | 0.804931 | 1.704164e-49 | -8.615850e-47 |
| Msa0032580 | Msa0127390 | 0.819154 | 1.348141e-52 | -8.615850e-47 |
| Msa0033130 | Msa0127390 | 0.937118 | 5.815119e-98 | -8.615850e-47 |
| Msa0043660 | Msa0127390 | 0.832671 | 8.277539e-56 | -8.615850e-47 |
| Msa0047160 | Msa0127390 | 0.816228 | 6.161787e-52 | -8.615850e-47 |
| Msa0053600 | Msa0127390 | 0.839120 | 1.915661e-57 | -8.615850e-47 |
| Msa0054440 | Msa0127390 | 0.814992 | 1.161482e-51 | -8.615850e-47 |
| Msa0070700 | Msa0127390 | 0.834523 | 2.853631e-56 | -8.615850e-47 |
| Msa0079820 | Msa0127390 | 0.957958 | 7.664942e-116 | -8.615850e-47 |
| Msa0090080 | Msa0127390 | 0.809835 | 1.554434e-50 | -8.615850e-47 |
| Msa0094470 | Msa0127390 | 0.815272 | 1.006526e-51 | -8.615850e-47 |
| Msa0099220 | Msa0127390 | 0.847025 | 1.501449e-59 | -8.615850e-47 |
| Msa0105620 | Msa0127390 | 0.800599 | 1.336310e-48 | -8.615850e-47 |
| Msa0115130 | Msa0127390 | 0.850535 | 1.594792e-60 | -8.615850e-47 |
| Msa0118590 | Msa0127390 | 0.851228 | 1.017151e-60 | -8.615850e-47 |
| Msa0118710 | Msa0127390 | 0.817728 | 2.837228e-52 | -8.615850e-47 |
| Msa0127390 | Msa0137550 | 0.836558 | 8.722013e-57 | -8.615850e-47 |
| Msa0127390 | Msa0144370 | 0.852283 | 5.109347e-61 | -8.615850e-47 |
| Msa0127390 | Msa0146770 | 0.817318 | 3.509328e-52 | -8.615850e-47 |
| Msa0127390 | Msa0159170 | 0.800090 | 1.696802e-48 | -8.615850e-47 |
| Msa0127390 | Msa0165660 | 0.845484 | 3.945157e-59 | -8.615850e-47 |
| Msa0127390 | Msa0172970 | 0.820184 | 7.843981e-53 | -8.615850e-47 |
| Msa0127390 | Msa0189300 | 0.815052 | 1.126044e-51 | -8.615850e-47 |
| Msa0127390 | Msa0202020 | 0.813945 | 1.979073e-51 | -8.615850e-47 |
| Msa0127390 | Msa0220720 | 0.820515 | 6.584264e-53 | -8.615850e-47 |
| Msa0127390 | Msa0231660 | 0.824423 | 8.138196e-54 | -8.615850e-47 |
| Msa0127390 | Msa0262050 | 0.810917 | 9.079174e-51 | -8.615850e-47 |
| Msa0127390 | Msa0299870 | 0.800297 | 1.539598e-48 | -8.615850e-47 |
| Msa0127390 | Msa0327300 | 0.805763 | 1.140828e-49 | -8.615850e-47 |
| Msa0127390 | Msa0337240 | 0.816662 | 4.925355e-52 | -8.615850e-47 |
| Msa0127390 | Msa0402650 | 0.806589 | 7.644436e-50 | -8.615850e-47 |
| Msa0127390 | Msa0449210 | 0.817070 | 3.990957e-52 | -8.615850e-47 |
| Msa0127390 | Msa0526540 | 0.801078 | 1.066812e-48 | -8.615850e-47 |
| Msa0127390 | Msa0542090 | 0.807598 | 4.675615e-50 | -8.615850e-47 |
| Msa0127390 | Msa0542130 | 0.808257 | 3.385126e-50 | -8.615850e-47 |
| Msa0127390 | Msa0554290 | 0.813388 | 2.624776e-51 | -8.615850e-47 |
| Msa0127390 | Msa0576940 | 0.805894 | 1.070701e-49 | -8.615850e-47 |
| Msa0127390 | Msa0581280 | 0.804073 | 2.573834e-49 | -8.615850e-47 |
| Msa0127390 | Msa0605000 | 0.805858 | 1.089816e-49 | -8.615850e-47 |
| Msa0127390 | Msa0660850 | 0.845614 | 3.637833e-59 | -8.615850e-47 |
| Msa0127390 | Msa0685140 | 0.812314 | 4.511731e-51 | -8.615850e-47 |
| Msa0127390 | Msa0698660 | 0.800956 | 1.130011e-48 | -8.615850e-47 |
| Msa0127390 | Msa0709040 | 0.818244 | 2.168489e-52 | -8.615850e-47 |
| Msa0127390 | Msa0715650 | 0.807323 | 5.346778e-50 | -8.615850e-47 |
| Msa0127390 | Msa0719420 | 0.852597 | 4.158658e-61 | -8.615850e-47 |
| Msa0127390 | Msa0757940 | 0.837561 | 4.834810e-57 | -8.615850e-47 |
| Msa0127390 | Msa0772480 | 0.820246 | 7.590100e-53 | -8.615850e-47 |
| Msa0127390 | Msa0789680 | 0.853173 | 2.846087e-61 | -8.615850e-47 |
| Msa0127390 | Msa0798440 | 0.817519 | 3.161842e-52 | -8.615850e-47 |
| Msa0127390 | Msa0799260 | 0.852225 | 5.309592e-61 | -8.615850e-47 |
| Msa0127390 | Msa0799310 | 0.847939 | 8.417059e-60 | -8.615850e-47 |
| Msa0127390 | Msa0802410 | 0.837815 | 4.159796e-57 | -8.615850e-47 |
| Msa0127390 | Msa0837630 | 0.836759 | 7.752309e-57 | -8.615850e-47 |
| Msa0127390 | Msa0909950 | 0.811419 | 7.066553e-51 | -8.615850e-47 |
| Msa0127390 | Msa0930490 | 0.821610 | 3.685421e-53 | -8.615850e-47 |
| Msa0127390 | Msa0933300 | 0.800030 | 1.744718e-48 | -8.615850e-47 |
| Msa0127390 | Msa0945440 | 0.815602 | 8.499001e-52 | -8.615850e-47 |
| Msa0127390 | Msa1009820 | 0.805341 | 1.399007e-49 | -8.615850e-47 |
| Msa0127390 | Msa1011680 | 0.816097 | 6.591842e-52 | -8.615850e-47 |
| Msa0127390 | Msa1104140 | 0.821954 | 3.068001e-53 | -8.615850e-47 |
| Msa0127390 | Msa1108820 | 0.808728 | 2.685627e-50 | -8.615850e-47 |
| Msa0127390 | Msa1135890 | 0.808353 | 3.229587e-50 | -8.615850e-47 |
| Msa0127390 | Msa1137700 | 0.814228 | 1.714391e-51 | -8.615850e-47 |
| Msa0127390 | Msa1197320 | 0.802597 | 5.201546e-49 | -8.615850e-47 |
| Msa0127390 | Msa1209200 | 0.806696 | 7.254879e-50 | -8.615850e-47 |
| Msa0127390 | Msa1218730 | 0.813063 | 3.093816e-51 | -8.615850e-47 |
| Msa0127390 | Msa1260530 | 0.813388 | 2.624912e-51 | -8.615850e-47 |
| Msa0127390 | Msa1265630 | 0.810959 | 8.894163e-51 | -8.615850e-47 |
| Msa0127390 | Msa1275430 | 0.801048 | 1.081945e-48 | -8.615850e-47 |
| Msa0127390 | Msa1331710 | 0.801432 | 9.027914e-49 | -8.615850e-47 |
| Msa0127390 | Msa1363330 | 0.801164 | 1.024602e-48 | -8.615850e-47 |
| Msa0127390 | Msa1366180 | 0.807384 | 5.188563e-50 | -8.615850e-47 |
| Msa0127390 | Msa1385100 | 0.811045 | 8.518893e-51 | -8.615850e-47 |
| Msa0127390 | Msa1386600 | 0.801422 | 9.070841e-49 | -8.615850e-47 |
| Msa0127390 | Msa1387410 | 0.821777 | 3.370650e-53 | -8.615850e-47 |
| Msa0127390 | Msa1394290 | 0.821742 | 3.435330e-53 | -8.615850e-47 |
| Msa0127390 | Msa1448690 | 0.801879 | 7.309515e-49 | -8.615850e-47 |
| Msa0127390 | Msa1457920 | 0.804736 | 1.872026e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127390 | MtrunA17_Chr1g0191441 | 92.929 | 297 | 9 | 2 | 1 | 288 | 1 | 294 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127390 | AT5G27395.2 | 53.535 | 297 | 121 | 5 | 1 | 283 | 1 | 294 | 1.83e-107 | 314 |
| Msa0127390 | AT5G27395.1 | 60.833 | 240 | 91 | 2 | 45 | 283 | 74 | 311 | 1.29e-106 | 312 |
Find 69 sgRNAs with CRISPR-Local
Find 406 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTACCCTTGAGATTT+TGG | 0.137011 | 1_3:+56616795 | Msa0127390:CDS |
| CTTTCTATCATTCATGAAAA+TGG | 0.162993 | 1_3:-56612267 | None:intergenic |
| AAAGAACAATTGCAGGTTTC+TGG | 0.194264 | 1_3:-56611917 | None:intergenic |
| AAAGAAGAGACCAAAATTTA+TGG | 0.206582 | 1_3:+56617768 | Msa0127390:three_prime_UTR |
| TATACAACTACCATAAATTT+TGG | 0.226167 | 1_3:-56617778 | None:intergenic |
| CTACATGGAGCAAGGTTTAT+TGG | 0.243157 | 1_3:+56616112 | Msa0127390:CDS |
| AGGTTCTTGTCCGTGATATA+TGG | 0.262057 | 1_3:+56617660 | Msa0127390:intron |
| TGAGATAACTACGATGCTTT+TGG | 0.269544 | 1_3:-56617743 | None:intergenic |
| TCTTAACCTTGCAATGGTAT+AGG | 0.312912 | 1_3:-56614632 | None:intergenic |
| TACATGGAGCAAGGTTTATT+GGG | 0.326398 | 1_3:+56616113 | Msa0127390:CDS |
| TTCAATCAAAGAACAATTGC+AGG | 0.330703 | 1_3:-56611924 | None:intergenic |
| AAATCTTTAACTTGGTTCCT+TGG | 0.346577 | 1_3:+56617847 | Msa0127390:three_prime_UTR |
| TTAGGAATAAAATCAAATAT+AGG | 0.351537 | 1_3:+56617900 | Msa0127390:three_prime_UTR |
| TAAGGTTCATAGATAATTCC+TGG | 0.354644 | 1_3:-56613854 | None:intergenic |
| ACAATATTCATCCCATCTTC+TGG | 0.358168 | 1_3:+56612053 | Msa0127390:CDS |
| ATAGGGCGGACTTGTGCATT+AGG | 0.363063 | 1_3:-56612317 | None:intergenic |
| CGTTTCTCCCTGGATCATAC+TGG | 0.364350 | 1_3:+56617699 | Msa0127390:CDS |
| GGGAGACAAGTTCATCTTAG+AGG | 0.365306 | 1_3:+56617868 | Msa0127390:three_prime_UTR |
| AAATGTTAACTTGTGCCCTT+AGG | 0.369573 | 1_3:+56617991 | Msa0127390:three_prime_UTR |
| CTCGTGAGAAAATCCCATTT+TGG | 0.371900 | 1_3:+56613882 | Msa0127390:CDS |
| AATCTTTAACTTGGTTCCTT+GGG | 0.387550 | 1_3:+56617848 | Msa0127390:three_prime_UTR |
| AACATTTCCCATAAAAGAAA+GGG | 0.399563 | 1_3:-56617975 | None:intergenic |
| GGATCATACTGGCGTCTTTG+TGG | 0.410969 | 1_3:+56617710 | Msa0127390:CDS |
| ACGAACTCTGCGTGCTCGTA+TGG | 0.416956 | 1_3:+56616161 | Msa0127390:CDS |
| GAGCAAGGTTTATTGGGAAA+TGG | 0.425014 | 1_3:+56616119 | Msa0127390:CDS |
| TAACATTTCCCATAAAAGAA+AGG | 0.433537 | 1_3:-56617976 | None:intergenic |
| CAAAGACGCCAGTATGATCC+AGG | 0.454939 | 1_3:-56617707 | None:intergenic |
| TTTGAAGCATATGACTCAAA+AGG | 0.457081 | 1_3:+56616942 | Msa0127390:CDS |
| GCCACAGCAAATCTTTAACT+TGG | 0.457511 | 1_3:+56617839 | Msa0127390:three_prime_UTR |
| GATCATTATCTTGTGCCCTA+AGG | 0.461944 | 1_3:-56618007 | None:intergenic |
| ATAAACACACTTATAGCTAA+TGG | 0.463177 | 1_3:+56615903 | Msa0127390:CDS |
| CAATATTCATCCCATCTTCT+GGG | 0.465219 | 1_3:+56612054 | Msa0127390:CDS |
| TTCTGCAGCTACCCAGAAGA+TGG | 0.468511 | 1_3:-56612065 | None:intergenic |
| ATGGTGACAAACACTCATTA+AGG | 0.473691 | 1_3:+56615922 | Msa0127390:CDS |
| GAGAAGGCTTCGTTTCTCCC+TGG | 0.489293 | 1_3:+56617689 | Msa0127390:CDS |
| AGAGTTCGTATCAAAACAAC+GGG | 0.491166 | 1_3:-56616147 | None:intergenic |
| ATCATTATCTTGTGCCCTAA+GGG | 0.497176 | 1_3:-56618006 | None:intergenic |
| AATGTTAACTTGTGCCCTTA+GGG | 0.504942 | 1_3:+56617992 | Msa0127390:three_prime_UTR |
| GATGTTCACTAGAAGTGGTT+GGG | 0.506017 | 1_3:+56614261 | Msa0127390:CDS |
| AGATAATTCCTGGACTTGAC+AGG | 0.515119 | 1_3:-56613844 | None:intergenic |
| TCAAAAGGTTCTGTTGTCGC+TGG | 0.516079 | 1_3:+56616957 | Msa0127390:CDS |
| AACGAAAAGCGACTTAATGA+TGG | 0.516876 | 1_3:+56614288 | Msa0127390:CDS |
| CAGATTTGCCTGTCAAGTCC+AGG | 0.517112 | 1_3:+56613836 | Msa0127390:CDS |
| CATGTTTAGCCAAAATCTCA+AGG | 0.543474 | 1_3:-56616804 | None:intergenic |
| GGATGTTCACTAGAAGTGGT+TGG | 0.545253 | 1_3:+56614260 | Msa0127390:intron |
| TAATGCACAAGTCCGCCCTA+TGG | 0.550378 | 1_3:+56612319 | Msa0127390:CDS |
| ATCAGGATGTTCACTAGAAG+TGG | 0.562937 | 1_3:+56614256 | Msa0127390:intron |
| TTTGACATTTCGATCTACAA+TGG | 0.565734 | 1_3:+56612137 | Msa0127390:CDS |
| AGAAGCGTTTGATAAAACAT+TGG | 0.580099 | 1_3:-56612094 | None:intergenic |
| TGATATATGGATATTTGAGA+AGG | 0.584780 | 1_3:+56617673 | Msa0127390:CDS |
| AAAGAAACAGTTCTATCTAG+AGG | 0.590191 | 1_3:+56614669 | Msa0127390:CDS |
| TCTGCAGCTACCCAGAAGAT+GGG | 0.592557 | 1_3:-56612064 | None:intergenic |
| CATACTGGCGTCTTTGTGGA+CGG | 0.602455 | 1_3:+56617714 | Msa0127390:CDS |
| AGAGGCTATCAGTATGTACA+AGG | 0.607682 | 1_3:+56614687 | Msa0127390:CDS |
| TAAGATGAACTTGTCTCCCA+AGG | 0.609061 | 1_3:-56617864 | None:intergenic |
| TTAAAGTAAGAGAAACTACA+TGG | 0.609989 | 1_3:+56616097 | Msa0127390:CDS |
| AAGAGAAACTACATGGAGCA+AGG | 0.613968 | 1_3:+56616104 | Msa0127390:CDS |
| TCTCAAATATCCATATATCA+CGG | 0.619706 | 1_3:-56617670 | None:intergenic |
| ACCAAGTTAAAGATTTGCTG+TGG | 0.625402 | 1_3:-56617840 | None:intergenic |
| AAAATGCCTATACCATTGCA+AGG | 0.627691 | 1_3:+56614626 | Msa0127390:CDS |
| ACATTTCCCATAAAAGAAAG+GGG | 0.628506 | 1_3:-56617974 | None:intergenic |
| ATGTTTAGCCAAAATCTCAA+GGG | 0.653343 | 1_3:-56616803 | None:intergenic |
| CATTTCCCATAAAAGAAAGG+GGG | 0.662697 | 1_3:-56617973 | None:intergenic |
| CAGAGTTCGTATCAAAACAA+CGG | 0.673005 | 1_3:-56616148 | None:intergenic |
| GAAAAGCGACTTAATGATGG+AGG | 0.681182 | 1_3:+56614291 | Msa0127390:CDS |
| AAAGACGCCAGTATGATCCA+GGG | 0.686647 | 1_3:-56617706 | None:intergenic |
| AGAAGATGGGATGAATATTG+TGG | 0.692349 | 1_3:-56612051 | None:intergenic |
| GGCTATCAGTATGTACAAGG+AGG | 0.702267 | 1_3:+56614690 | Msa0127390:CDS |
| TAAGAGAACCTACCATAGGG+CGG | 0.722190 | 1_3:-56612331 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTAATTTAATTT+GGG | + | chr1_3:56615119-56615138 | Msa0127390:intron | 0.0% |
| !!! | TTTTTTTGACAATATATTAA+AGG | + | chr1_3:56612747-56612766 | Msa0127390:intron | 10.0% |
| !!! | TATATTTTATCTATGATTTT+GGG | - | chr1_3:56612834-56612853 | None:intergenic | 10.0% |
| !!! | ATATATTTTATCTATGATTT+TGG | - | chr1_3:56612835-56612854 | None:intergenic | 10.0% |
| !! | TATATGAAATATTATTTAAC+GGG | + | chr1_3:56612850-56612869 | Msa0127390:intron | 10.0% |
| !!! | ATTATTTTAATCATTGATTA+AGG | + | chr1_3:56613176-56613195 | Msa0127390:intron | 10.0% |
| !! | TCTATTAAAGAATATTATAA+TGG | - | chr1_3:56613701-56613720 | None:intergenic | 10.0% |
| !!! | AGTATTTTTTATTTCTTTTT+AGG | - | chr1_3:56613987-56614006 | None:intergenic | 10.0% |
| !! | AATTAAAAAAAGTAAAATAC+GGG | - | chr1_3:56615227-56615246 | None:intergenic | 10.0% |
| !!! | AATTTACTTAATAAATTTTG+TGG | + | chr1_3:56615690-56615709 | Msa0127390:intron | 10.0% |
| !!! | TTTTCTATATTATTGTTTTA+TGG | + | chr1_3:56616714-56616733 | Msa0127390:intron | 10.0% |
| !!! | AATTTATATTTAATTTCTTG+TGG | + | chr1_3:56617479-56617498 | Msa0127390:intron | 10.0% |
| !!! | ATTGAAAATATAAGTTTTTA+AGG | + | chr1_3:56618059-56618078 | Msa0127390:three_prime_UTR | 10.0% |
| !!! | ATTATGATTTTTTTTGCTTT+TGG | + | chr1_3:56612184-56612203 | Msa0127390:intron | 15.0% |
| !!! | TTATGATTTTTTTTGCTTTT+GGG | + | chr1_3:56612185-56612204 | Msa0127390:intron | 15.0% |
| !!! | GTTTTCATAAATTATCTTAA+AGG | - | chr1_3:56612445-56612464 | None:intergenic | 15.0% |
| !! | ATATGAAATATTATTTAACG+GGG | + | chr1_3:56612851-56612870 | Msa0127390:intron | 15.0% |
| !! | AAATATACCAACAAAATAAT+TGG | - | chr1_3:56613280-56613299 | None:intergenic | 15.0% |
| !! | AAAACAAATAAAATCAATCT+AGG | + | chr1_3:56613734-56613753 | Msa0127390:intron | 15.0% |
| !! | AATCATGTATAACAATATAT+GGG | - | chr1_3:56614010-56614029 | None:intergenic | 15.0% |
| !! | TATTAATTAGAAAATTAACG+AGG | + | chr1_3:56614910-56614929 | Msa0127390:intron | 15.0% |
| !!! | AAAAACCGATTTTTAAAATA+GGG | - | chr1_3:56615198-56615217 | None:intergenic | 15.0% |
| !!! | AAAAAACCGATTTTTAAAAT+AGG | - | chr1_3:56615199-56615218 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAATCGGTTTTTT+TGG | + | chr1_3:56615199-56615218 | Msa0127390:intron | 15.0% |
| !! | ATTAAAAAAAGTAAAATACG+GGG | - | chr1_3:56615226-56615245 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTTTCAGAATTT+TGG | - | chr1_3:56615430-56615449 | None:intergenic | 15.0% |
| !!! | ATTCTGAAAAAAAGTAAAAT+AGG | + | chr1_3:56615432-56615451 | Msa0127390:intron | 15.0% |
| !!! | TTCTGAAAAAAAGTAAAATA+GGG | + | chr1_3:56615433-56615452 | Msa0127390:intron | 15.0% |
| !!! | TATTTTCAAATTATGTAATG+TGG | - | chr1_3:56616684-56616703 | None:intergenic | 15.0% |
| !! | GTTGAGAAAATAATTTATAT+TGG | - | chr1_3:56617594-56617613 | None:intergenic | 15.0% |
| !! | TTAGGAATAAAATCAAATAT+AGG | + | chr1_3:56617900-56617919 | Msa0127390:three_prime_UTR | 15.0% |
| !! | TTTCATTCAAAAACAAAATT+TGG | - | chr1_3:56617937-56617956 | None:intergenic | 15.0% |
| !!! | TATGATTTTTTTTGCTTTTG+GGG | + | chr1_3:56612186-56612205 | Msa0127390:intron | 20.0% |
| !!! | TTTATGAAAACAACTTTTGA+TGG | + | chr1_3:56612454-56612473 | Msa0127390:intron | 20.0% |
| !!! | TTATGAAAACAACTTTTGAT+GGG | + | chr1_3:56612455-56612474 | Msa0127390:intron | 20.0% |
| !! | CAATACAATAACTACAAATT+GGG | - | chr1_3:56612594-56612613 | None:intergenic | 20.0% |
| !! | TTGGATTAATGAAATTTACA+AGG | + | chr1_3:56612611-56612630 | Msa0127390:intron | 20.0% |
| !! | TGTAAATTGTGTTATATGAA+TGG | - | chr1_3:56613086-56613105 | None:intergenic | 20.0% |
| !! | ATGAATATAGAATACAAGAA+GGG | - | chr1_3:56613254-56613273 | None:intergenic | 20.0% |
| !! | TATGAATATAGAATACAAGA+AGG | - | chr1_3:56613255-56613274 | None:intergenic | 20.0% |
| !!! | TCATATACCAATTATTTTGT+TGG | + | chr1_3:56613270-56613289 | Msa0127390:intron | 20.0% |
| !!! | GTATATTTGAATTGATTTAC+TGG | + | chr1_3:56613292-56613311 | Msa0127390:intron | 20.0% |
| !!! | TTATTTTACTCTTCAATTAG+AGG | + | chr1_3:56613384-56613403 | Msa0127390:intron | 20.0% |
| !! | GAATCATGTATAACAATATA+TGG | - | chr1_3:56614011-56614030 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCATATCTTTTTG+TGG | + | chr1_3:56614045-56614064 | Msa0127390:intron | 20.0% |
| !!! | AAGTTTTCATATCTTTTTGT+GGG | + | chr1_3:56614046-56614065 | Msa0127390:intron | 20.0% |
| !! | ATTATTACATAGACATAGTT+AGG | - | chr1_3:56614373-56614392 | None:intergenic | 20.0% |
| !! | ATACTATTTAGAAAAACACT+AGG | - | chr1_3:56614462-56614481 | None:intergenic | 20.0% |
| !! | GTATGGAATACAAAATATAA+CGG | - | chr1_3:56614723-56614742 | None:intergenic | 20.0% |
| !! | ACATTATTGAAATCAAAACT+AGG | + | chr1_3:56614936-56614955 | Msa0127390:intron | 20.0% |
| !! | CATTATTGAAATCAAAACTA+GGG | + | chr1_3:56614937-56614956 | Msa0127390:intron | 20.0% |
| !!! | AAATAAATGGTCTATCTTTT+GGG | - | chr1_3:56615071-56615090 | None:intergenic | 20.0% |
| !!! | TAAATAAATGGTCTATCTTT+TGG | - | chr1_3:56615072-56615091 | None:intergenic | 20.0% |
| !!! | AAAACCGATTTTTAAAATAG+GGG | - | chr1_3:56615197-56615216 | None:intergenic | 20.0% |
| !! | TCTGAAAAAAAGTAAAATAG+GGG | + | chr1_3:56615434-56615453 | Msa0127390:intron | 20.0% |
| !!! | TTTTCATAAAAATGTTGGTT+TGG | - | chr1_3:56615462-56615481 | None:intergenic | 20.0% |
| !!! | ACCAACATTTTTATGAAAAT+AGG | + | chr1_3:56615463-56615482 | Msa0127390:intron | 20.0% |
| !!! | CCAACATTTTTATGAAAATA+GGG | + | chr1_3:56615464-56615483 | Msa0127390:intron | 20.0% |
| !!! | CAACATTTTTATGAAAATAG+GGG | + | chr1_3:56615465-56615484 | Msa0127390:intron | 20.0% |
| !!! | AACATTTTTATGAAAATAGG+GGG | + | chr1_3:56615466-56615485 | Msa0127390:intron | 20.0% |
| !!! | GCTGTTTTTTAATTCTTTAT+AGG | + | chr1_3:56615770-56615789 | Msa0127390:intron | 20.0% |
| !! | AAACAAAACTCTGATAATTA+TGG | - | chr1_3:56616052-56616071 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTTAATCTCATA+TGG | + | chr1_3:56616407-56616426 | Msa0127390:intron | 20.0% |
| !! | TGATCCTATATAATATGAAT+TGG | + | chr1_3:56616544-56616563 | Msa0127390:intron | 20.0% |
| !! | TTACTGAAAATTTATATCCT+TGG | + | chr1_3:56616855-56616874 | Msa0127390:intron | 20.0% |
| !! | AACTATTATGAAAGATTTAG+AGG | + | chr1_3:56617314-56617333 | Msa0127390:intron | 20.0% |
| !! | TCTATTTCATAGAATAATTG+TGG | - | chr1_3:56617457-56617476 | None:intergenic | 20.0% |
| !! | GAGAAAATAATTTATATTGG+TGG | - | chr1_3:56617591-56617610 | None:intergenic | 20.0% |
| !!! | TATACAACTACCATAAATTT+TGG | - | chr1_3:56617781-56617800 | None:intergenic | 20.0% |
| !! | TTCAAAAACAAAATTTGGAT+AGG | - | chr1_3:56617932-56617951 | None:intergenic | 20.0% |
| ! | CTTTCTATCATTCATGAAAA+TGG | - | chr1_3:56612270-56612289 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr1_3:56612544-56612563 | Msa0127390:intron | 25.0% |
| ! | CCAATACAATAACTACAAAT+TGG | - | chr1_3:56612595-56612614 | None:intergenic | 25.0% |
| ! | CCAATTTGTAGTTATTGTAT+TGG | + | chr1_3:56612592-56612611 | Msa0127390:intron | 25.0% |
| !! | GTTTAAGTTCTTACTAGTTA+TGG | + | chr1_3:56612699-56612718 | Msa0127390:intron | 25.0% |
| ! | TTCTTACTAGTTATGGTTTA+AGG | + | chr1_3:56612706-56612725 | Msa0127390:intron | 25.0% |
| ! | ATGGTTTAAGGAGATATTAA+AGG | + | chr1_3:56612718-56612737 | Msa0127390:intron | 25.0% |
| ! | AATTTATGACTACCAATTGT+TGG | + | chr1_3:56612792-56612811 | Msa0127390:intron | 25.0% |
| ! | AGTCAGAATATAAATTCGAA+TGG | + | chr1_3:56613010-56613029 | Msa0127390:intron | 25.0% |
| !! | TAATGATTTAGATGGACTTT+AGG | + | chr1_3:56613648-56613667 | Msa0127390:intron | 25.0% |
| ! | AAAACAATTGTTACATACGA+GGG | - | chr1_3:56613677-56613696 | None:intergenic | 25.0% |
| ! | AAAAACAATTGTTACATACG+AGG | - | chr1_3:56613678-56613697 | None:intergenic | 25.0% |
| ! | AAGGCATGAAAATTAATACT+TGG | - | chr1_3:56613789-56613808 | None:intergenic | 25.0% |
| ! | GAAATAATGATATGTCAGTA+AGG | - | chr1_3:56613808-56613827 | None:intergenic | 25.0% |
| ! | TACTGACATATCATTATTTC+AGG | + | chr1_3:56613808-56613827 | Msa0127390:intron | 25.0% |
| ! | ACTGACATATCATTATTTCA+GGG | + | chr1_3:56613809-56613828 | Msa0127390:intron | 25.0% |
| ! | TCTATGATGTTTCATATATC+AGG | + | chr1_3:56614239-56614258 | Msa0127390:intron | 25.0% |
| ! | CATAGTTAGGTTTCAAAATT+GGG | - | chr1_3:56614360-56614379 | None:intergenic | 25.0% |
| ! | ACATAGTTAGGTTTCAAAAT+TGG | - | chr1_3:56614361-56614380 | None:intergenic | 25.0% |
| ! | AATAACATCCATAGAAGAAA+GGG | - | chr1_3:56614563-56614582 | None:intergenic | 25.0% |
| ! | CAAAAAGCAAAATTTGATTC+AGG | - | chr1_3:56614591-56614610 | None:intergenic | 25.0% |
| ! | TCAAAAAATAAAGCTTGGTA+TGG | - | chr1_3:56614740-56614759 | None:intergenic | 25.0% |
| ! | ATGAGTCAAAAAATAAAGCT+TGG | - | chr1_3:56614745-56614764 | None:intergenic | 25.0% |
| ! | TAATAGCGTAAATTAGTAAC+AGG | - | chr1_3:56614895-56614914 | None:intergenic | 25.0% |
| !!! | GTTTTAAACAAGGTTGATTT+TGG | - | chr1_3:56614965-56614984 | None:intergenic | 25.0% |
| ! | CAAATCTAGAGGTAAATAAA+TGG | - | chr1_3:56615084-56615103 | None:intergenic | 25.0% |
| !!! | AAACCGATTTTTAAAATAGG+GGG | - | chr1_3:56615196-56615215 | None:intergenic | 25.0% |
| !!! | TAGACATATTTTTGCTAACA+TGG | - | chr1_3:56615338-56615357 | None:intergenic | 25.0% |
| ! | GCAAAAATATGTCTAATAAG+CGG | + | chr1_3:56615343-56615362 | Msa0127390:intron | 25.0% |
| ! | CTGAAAAAAAGTAAAATAGG+GGG | + | chr1_3:56615435-56615454 | Msa0127390:intron | 25.0% |
| !! | CCCTATTTTCATAAAAATGT+TGG | - | chr1_3:56615467-56615486 | None:intergenic | 25.0% |
| !! | ACATTTTTATGAAAATAGGG+GGG | + | chr1_3:56615467-56615486 | Msa0127390:intron | 25.0% |
| ! | ATAATATGTTCAAATGGCTA+AGG | - | chr1_3:56615617-56615636 | None:intergenic | 25.0% |
| !!! | TTTGCTTCATTTTGTTTCTT+TGG | + | chr1_3:56615740-56615759 | Msa0127390:intron | 25.0% |
| !!! | TTCATGTATTTTTAACCACT+AGG | + | chr1_3:56615793-56615812 | Msa0127390:intron | 25.0% |
| !! | AAGGAAAGGAAATTTTATCA+TGG | - | chr1_3:56615875-56615894 | None:intergenic | 25.0% |
| ! | TTAAAGTAAGAGAAACTACA+TGG | + | chr1_3:56616097-56616116 | Msa0127390:CDS | 25.0% |
| ! | TCGTATTTCATATACACATT+TGG | - | chr1_3:56616247-56616266 | None:intergenic | 25.0% |
| ! | ATTAAATATGTATCCCAGAA+AGG | - | chr1_3:56616475-56616494 | None:intergenic | 25.0% |
| ! | ATTATATAGGATCATCATCA+TGG | - | chr1_3:56616538-56616557 | None:intergenic | 25.0% |
| ! | CTAGCCAATTCATATTATAT+AGG | - | chr1_3:56616551-56616570 | None:intergenic | 25.0% |
| ! | TATGCTTTACACGTTAAAAT+TGG | + | chr1_3:56616827-56616846 | Msa0127390:intron | 25.0% |
| ! | ATCTAATGCATTATGCTAAT+TGG | - | chr1_3:56617071-56617090 | None:intergenic | 25.0% |
| ! | TAGAAAAGATGGTAGAAAAT+AGG | + | chr1_3:56617190-56617209 | Msa0127390:intron | 25.0% |
| ! | TCTTTCATAATAGTTTCTCT+AGG | - | chr1_3:56617309-56617328 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGATTCAAATA+TGG | + | chr1_3:56617338-56617357 | Msa0127390:intron | 25.0% |
| !! | TTATATTGGTGGTAAAGAAA+TGG | - | chr1_3:56617580-56617599 | None:intergenic | 25.0% |
| ! | TCTCAAATATCCATATATCA+CGG | - | chr1_3:56617673-56617692 | None:intergenic | 25.0% |
| ! | TGATATATGGATATTTGAGA+AGG | + | chr1_3:56617673-56617692 | Msa0127390:CDS | 25.0% |
| ! | AAAGAAGAGACCAAAATTTA+TGG | + | chr1_3:56617768-56617787 | Msa0127390:three_prime_UTR | 25.0% |
| ! | AACATTTCCCATAAAAGAAA+GGG | - | chr1_3:56617978-56617997 | None:intergenic | 25.0% |
| ! | TAACATTTCCCATAAAAGAA+AGG | - | chr1_3:56617979-56617998 | None:intergenic | 25.0% |
| TTCAATCAAAGAACAATTGC+AGG | - | chr1_3:56611927-56611946 | None:intergenic | 30.0% | |
| !! | AGAAGCGTTTGATAAAACAT+TGG | - | chr1_3:56612097-56612116 | None:intergenic | 30.0% |
| TTTGACATTTCGATCTACAA+TGG | + | chr1_3:56612137-56612156 | Msa0127390:CDS | 30.0% | |
| !!! | TTTTTTTGCTTTTGGGGTTT+TGG | + | chr1_3:56612192-56612211 | Msa0127390:intron | 30.0% |
| !!! | TTTTTTGCTTTTGGGGTTTT+GGG | + | chr1_3:56612193-56612212 | Msa0127390:intron | 30.0% |
| TTGTTGTCAATGTCTTTCTT+AGG | + | chr1_3:56612232-56612251 | Msa0127390:intron | 30.0% | |
| ATTTAAGAGAACCTACCATA+GGG | - | chr1_3:56612337-56612356 | None:intergenic | 30.0% | |
| AATTTAAGAGAACCTACCAT+AGG | - | chr1_3:56612338-56612357 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | + | chr1_3:56612414-56612433 | Msa0127390:intron | 30.0% | |
| CATAAGTTGTTTATCCAAAC+AGG | + | chr1_3:56612543-56612562 | Msa0127390:intron | 30.0% | |
| ! | TCTGCTAATTTTCCAACAAT+TGG | - | chr1_3:56612807-56612826 | None:intergenic | 30.0% |
| ATTGATTAAGGTTATCCAAG+TGG | + | chr1_3:56613188-56613207 | Msa0127390:intron | 30.0% | |
| ! | ATTGCGAATTTTGAACAGAA+AGG | - | chr1_3:56613336-56613355 | None:intergenic | 30.0% |
| AAAATTCGCAATTGAAGTGA+AGG | + | chr1_3:56613344-56613363 | Msa0127390:intron | 30.0% | |
| AAATTCGCAATTGAAGTGAA+GGG | + | chr1_3:56613345-56613364 | Msa0127390:intron | 30.0% | |
| ACAGTTCATAGCTACAATTA+AGG | + | chr1_3:56613427-56613446 | Msa0127390:intron | 30.0% | |
| TCCAGAGTTAATGATTTAGA+TGG | + | chr1_3:56613640-56613659 | Msa0127390:intron | 30.0% | |
| TCCATCTAAATCATTAACTC+TGG | - | chr1_3:56613644-56613663 | None:intergenic | 30.0% | |
| !! | TCTGCAAATAAACGGATTAT+AGG | - | chr1_3:56613766-56613785 | None:intergenic | 30.0% |
| ATACTTGGTCTGCAAATAAA+CGG | - | chr1_3:56613774-56613793 | None:intergenic | 30.0% | |
| TAAGGTTCATAGATAATTCC+TGG | - | chr1_3:56613857-56613876 | None:intergenic | 30.0% | |
| !! | AGAAAATCCCATTTTGGAAA+AGG | + | chr1_3:56613888-56613907 | Msa0127390:CDS | 30.0% |
| ! | AACCTAACCTTTTCCAAAAT+GGG | - | chr1_3:56613898-56613917 | None:intergenic | 30.0% |
| AACTTTATAAGTATGCATCC+TGG | + | chr1_3:56614202-56614221 | Msa0127390:intron | 30.0% | |
| TAGAAATTATAGAGAAGACC+AGG | - | chr1_3:56614223-56614242 | None:intergenic | 30.0% | |
| GAATAACATCCATAGAAGAA+AGG | - | chr1_3:56614564-56614583 | None:intergenic | 30.0% | |
| ! | TGTTTTTCTTAACCTTGCAA+TGG | - | chr1_3:56614641-56614660 | None:intergenic | 30.0% |
| ATTGCAAGGTTAAGAAAAAC+AGG | + | chr1_3:56614640-56614659 | Msa0127390:CDS | 30.0% | |
| AAAGAAACAGTTCTATCTAG+AGG | + | chr1_3:56614669-56614688 | Msa0127390:CDS | 30.0% | |
| !! | CTTTAGTTGTTGTTTGTTGT+TGG | - | chr1_3:56614772-56614791 | None:intergenic | 30.0% |
| !!! | TATCCTTCTGGTTTTAAACA+AGG | - | chr1_3:56614975-56614994 | None:intergenic | 30.0% |
| !! | TTTGATTTGATGTATCCTTC+TGG | - | chr1_3:56614987-56615006 | None:intergenic | 30.0% |
| TTTATAAGTATGCACCCATT+AGG | + | chr1_3:56615008-56615027 | Msa0127390:intron | 30.0% | |
| GCTACAATCAATAAACTACA+TGG | + | chr1_3:56615039-56615058 | Msa0127390:intron | 30.0% | |
| TTGTCACGTCATAAATGAAT+AGG | - | chr1_3:56615292-56615311 | None:intergenic | 30.0% | |
| ! | CATTTTTATGAAAATAGGGG+GGG | + | chr1_3:56615468-56615487 | Msa0127390:intron | 30.0% |
| !!! | AAAGGCTTTAAATGCACTTT+TGG | - | chr1_3:56615494-56615513 | None:intergenic | 30.0% |
| ! | GTTTCAAAACTGCATCTTTT+AGG | - | chr1_3:56615543-56615562 | None:intergenic | 30.0% |
| AGGCTGATAATATGTTCAAA+TGG | - | chr1_3:56615623-56615642 | None:intergenic | 30.0% | |
| ATTTATGTATCTGCTTCATC+AGG | - | chr1_3:56615643-56615662 | None:intergenic | 30.0% | |
| TGATGAAGCAGATACATAAA+TGG | + | chr1_3:56615642-56615661 | Msa0127390:intron | 30.0% | |
| AGCAAATCTCTGTAATCAAA+AGG | - | chr1_3:56615726-56615745 | None:intergenic | 30.0% | |
| ATCATGATAAATTGTCCTAG+TGG | - | chr1_3:56615811-56615830 | None:intergenic | 30.0% | |
| CTAGGACAATTTATCATGAT+TGG | + | chr1_3:56615811-56615830 | Msa0127390:intron | 30.0% | |
| CACTGGATAAAATCACAAAA+AGG | - | chr1_3:56615988-56616007 | None:intergenic | 30.0% | |
| TTCGCAAAAATAATACACAC+TGG | - | chr1_3:56616005-56616024 | None:intergenic | 30.0% | |
| ATGATACTACTCAATCCAAT+CGG | - | chr1_3:56616336-56616355 | None:intergenic | 30.0% | |
| TAGTATCATTACCTTTGCTA+GGG | + | chr1_3:56616347-56616366 | Msa0127390:intron | 30.0% | |
| ATGTTTAGCCAAAATCTCAA+GGG | - | chr1_3:56616806-56616825 | None:intergenic | 30.0% | |
| ATATGCTTCAAATTTCTGCA+AGG | - | chr1_3:56616934-56616953 | None:intergenic | 30.0% | |
| ! | TTTGAAGCATATGACTCAAA+AGG | + | chr1_3:56616942-56616961 | Msa0127390:CDS | 30.0% |
| TCTTTGTCTCATATAGTAGA+CGG | + | chr1_3:56617117-56617136 | Msa0127390:intron | 30.0% | |
| TGGTTTATGATCGAACATTA+TGG | + | chr1_3:56617358-56617377 | Msa0127390:intron | 30.0% | |
| ! | AACTTGATAGTTGATACAGT+GGG | + | chr1_3:56617539-56617558 | Msa0127390:intron | 30.0% |
| GAAACCAGTACTTGAATAAA+GGG | - | chr1_3:56617629-56617648 | None:intergenic | 30.0% | |
| !! | AAATCTTTAACTTGGTTCCT+TGG | + | chr1_3:56617847-56617866 | Msa0127390:three_prime_UTR | 30.0% |
| !! | AATCTTTAACTTGGTTCCTT+GGG | + | chr1_3:56617848-56617867 | Msa0127390:three_prime_UTR | 30.0% |
| !!! | TCTTAGAGGAGTTTTGTTTT+AGG | + | chr1_3:56617882-56617901 | Msa0127390:three_prime_UTR | 30.0% |
| ! | AATTTCCCCCTTTCTTTTAT+GGG | + | chr1_3:56617968-56617987 | Msa0127390:three_prime_UTR | 30.0% |
| ACATTTCCCATAAAAGAAAG+GGG | - | chr1_3:56617977-56617996 | None:intergenic | 30.0% | |
| AGAAGATGGGATGAATATTG+TGG | - | chr1_3:56612054-56612073 | None:intergenic | 35.0% | |
| ACAATATTCATCCCATCTTC+TGG | + | chr1_3:56612053-56612072 | Msa0127390:CDS | 35.0% | |
| CAATATTCATCCCATCTTCT+GGG | + | chr1_3:56612054-56612073 | Msa0127390:CDS | 35.0% | |
| GGATAAACAACTTATGTTGC+AGG | - | chr1_3:56612539-56612558 | None:intergenic | 35.0% | |
| AAAAATAGACGAGCAAAGCT+CGG | - | chr1_3:56612676-56612695 | None:intergenic | 35.0% | |
| !!! | GCTTTGCTCGTCTATTTTTT+AGG | + | chr1_3:56612677-56612696 | Msa0127390:intron | 35.0% |
| TATATTCTGACTATCCCATC+AGG | - | chr1_3:56613002-56613021 | None:intergenic | 35.0% | |
| ! | AATACAAGAAGGGCATAAGT+GGG | - | chr1_3:56613244-56613263 | None:intergenic | 35.0% |
| AAGTGAAGGGTTTCTTCTAA+AGG | + | chr1_3:56613358-56613377 | Msa0127390:intron | 35.0% | |
| ACCATCCATTGAAAAGACAA+AGG | - | chr1_3:56613545-56613564 | None:intergenic | 35.0% | |
| ! | CTTTTCAATGGATGGTAAAG+TGG | + | chr1_3:56613549-56613568 | Msa0127390:intron | 35.0% |
| !! | ATCCCATTTTGGAAAAGGTT+AGG | + | chr1_3:56613893-56613912 | Msa0127390:intron | 35.0% |
| ! | CAACCTAACCTTTTCCAAAA+TGG | - | chr1_3:56613899-56613918 | None:intergenic | 35.0% |
| GAGATAAGAAGCTAAAGCAA+TGG | - | chr1_3:56613938-56613957 | None:intergenic | 35.0% | |
| AACGAAAAGCGACTTAATGA+TGG | + | chr1_3:56614288-56614307 | Msa0127390:CDS | 35.0% | |
| AGATTGGGGGCAAATAAAAA+GGG | - | chr1_3:56614426-56614445 | None:intergenic | 35.0% | |
| AAGATTGGGGGCAAATAAAA+AGG | - | chr1_3:56614427-56614446 | None:intergenic | 35.0% | |
| !! | TTTTTATTTGCCCCCAATCT+TGG | + | chr1_3:56614426-56614445 | Msa0127390:intron | 35.0% |
| ! | AGTACTGAATACTGGACAAT+AGG | + | chr1_3:56614531-56614550 | Msa0127390:intron | 35.0% |
| AAAATGCCTATACCATTGCA+AGG | + | chr1_3:56614626-56614645 | Msa0127390:CDS | 35.0% | |
| TCTTAACCTTGCAATGGTAT+AGG | - | chr1_3:56614635-56614654 | None:intergenic | 35.0% | |
| ! | CAACCTTGTTTAAAACCAGA+AGG | + | chr1_3:56614969-56614988 | Msa0127390:intron | 35.0% |
| ! | ACCTCTAGATTTGAAACTAG+AGG | + | chr1_3:56615091-56615110 | Msa0127390:intron | 35.0% |
| ! | TCCTCTAGTTTCAAATCTAG+AGG | - | chr1_3:56615095-56615114 | None:intergenic | 35.0% |
| !! | GGTCCCCCTATTTTAAAAAT+CGG | + | chr1_3:56615190-56615209 | Msa0127390:intron | 35.0% |
| ATGACGTGACAATGCTTATT+AGG | + | chr1_3:56615300-56615319 | Msa0127390:intron | 35.0% | |
| TGCTAACATGGATATTAGTG+TGG | - | chr1_3:56615326-56615345 | None:intergenic | 35.0% | |
| GAAACATTCAAACTCCTTTG+TGG | + | chr1_3:56615558-56615577 | Msa0127390:intron | 35.0% | |
| TAGCAATAAACAGACCACAA+AGG | - | chr1_3:56615575-56615594 | None:intergenic | 35.0% | |
| ATCTCTGTAATCAAAAGGTG+TGG | - | chr1_3:56615721-56615740 | None:intergenic | 35.0% | |
| ! | TTATCATGATTGGTTCTTGC+TGG | + | chr1_3:56615821-56615840 | Msa0127390:intron | 35.0% |
| GTTTATCTGCAGAAAAGGAA+AGG | - | chr1_3:56615889-56615908 | None:intergenic | 35.0% | |
| AGTGTGTTTATCTGCAGAAA+AGG | - | chr1_3:56615894-56615913 | None:intergenic | 35.0% | |
| ATGGTGACAAACACTCATTA+AGG | + | chr1_3:56615922-56615941 | Msa0127390:CDS | 35.0% | |
| TACATGGAGCAAGGTTTATT+GGG | + | chr1_3:56616113-56616132 | Msa0127390:CDS | 35.0% | |
| AGAGTTCGTATCAAAACAAC+GGG | - | chr1_3:56616150-56616169 | None:intergenic | 35.0% | |
| CAGAGTTCGTATCAAAACAA+CGG | - | chr1_3:56616151-56616170 | None:intergenic | 35.0% | |
| GTAGTATCATTACCTTTGCT+AGG | + | chr1_3:56616346-56616365 | Msa0127390:intron | 35.0% | |
| ATGAATTGGCTAGATCTTGT+TGG | + | chr1_3:56616558-56616577 | Msa0127390:intron | 35.0% | |
| ATTTCTTTGTCTTTGCAGCT+TGG | + | chr1_3:56616739-56616758 | Msa0127390:intron | 35.0% | |
| ! | TCAGATTACCCTTGAGATTT+TGG | + | chr1_3:56616795-56616814 | Msa0127390:CDS | 35.0% |
| CATGTTTAGCCAAAATCTCA+AGG | - | chr1_3:56616807-56616826 | None:intergenic | 35.0% | |
| CTTTGTCTCATATAGTAGAC+GGG | + | chr1_3:56617118-56617137 | Msa0127390:intron | 35.0% | |
| ATAGTAGACGGGATAGAATT+AGG | + | chr1_3:56617129-56617148 | Msa0127390:intron | 35.0% | |
| AGTAACTGCAGTAGAAAAGA+TGG | + | chr1_3:56617179-56617198 | Msa0127390:intron | 35.0% | |
| AGATGGTAGAAAATAGGCTT+AGG | + | chr1_3:56617196-56617215 | Msa0127390:intron | 35.0% | |
| CTACTCTTCATACTACATAC+TGG | - | chr1_3:56617245-56617264 | None:intergenic | 35.0% | |
| AGTATGAAGAGTAGATCAGA+TGG | + | chr1_3:56617251-56617270 | Msa0127390:intron | 35.0% | |
| AGATTTAGAGGCTAATGAGT+TGG | + | chr1_3:56617326-56617345 | Msa0127390:intron | 35.0% | |
| TTCTTGTGGCATGAATTATG+TGG | + | chr1_3:56617493-56617512 | Msa0127390:intron | 35.0% | |
| TCTTGTGGCATGAATTATGT+GGG | + | chr1_3:56617494-56617513 | Msa0127390:intron | 35.0% | |
| ! | GAACTTGATAGTTGATACAG+TGG | + | chr1_3:56617538-56617557 | Msa0127390:intron | 35.0% |
| GGAAACCAGTACTTGAATAA+AGG | - | chr1_3:56617630-56617649 | None:intergenic | 35.0% | |
| !! | ACTGGTTTCCTATATTTTCC+AGG | + | chr1_3:56617640-56617659 | Msa0127390:intron | 35.0% |
| GACAAGAACCTGGAAAATAT+AGG | - | chr1_3:56617651-56617670 | None:intergenic | 35.0% | |
| ! | TGAGATAACTACGATGCTTT+TGG | - | chr1_3:56617746-56617765 | None:intergenic | 35.0% |
| !! | ACCAAGTTAAAGATTTGCTG+TGG | - | chr1_3:56617843-56617862 | None:intergenic | 35.0% |
| ! | GAATTTCCCCCTTTCTTTTA+TGG | + | chr1_3:56617967-56617986 | Msa0127390:three_prime_UTR | 35.0% |
| CATTTCCCATAAAAGAAAGG+GGG | - | chr1_3:56617976-56617995 | None:intergenic | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+AGG | + | chr1_3:56617991-56618010 | Msa0127390:three_prime_UTR | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+GGG | + | chr1_3:56617992-56618011 | Msa0127390:three_prime_UTR | 35.0% |
| ATCATTATCTTGTGCCCTAA+GGG | - | chr1_3:56618009-56618028 | None:intergenic | 35.0% | |
| TCAATGTCTTTCTTAGGCTG+CGG | + | chr1_3:56612238-56612257 | Msa0127390:intron | 40.0% | |
| AATCATCAAGCTGTGCTGTA+TGG | + | chr1_3:56612378-56612397 | Msa0127390:intron | 40.0% | |
| TGTTTATCCAAACAGGGACA+TGG | + | chr1_3:56612550-56612569 | Msa0127390:intron | 40.0% | |
| TAATCTACCATGTCCCTGTT+TGG | - | chr1_3:56612560-56612579 | None:intergenic | 40.0% | |
| !! | CAAGGATGACTTTTGTTGTG+TGG | + | chr1_3:56612629-56612648 | Msa0127390:intron | 40.0% |
| CGAACACTAACAAACATGAC+AGG | - | chr1_3:56612901-56612920 | None:intergenic | 40.0% | |
| ! | TGGAGAAGAAAGAGCATGAA+AGG | + | chr1_3:56612930-56612949 | Msa0127390:intron | 40.0% |
| TAGAGTTTCTCTGACCTGAT+GGG | + | chr1_3:56612985-56613004 | Msa0127390:intron | 40.0% | |
| ! | GATGTGTTGGGTTGTTCAAT+TGG | - | chr1_3:56613058-56613077 | None:intergenic | 40.0% |
| AATCGAGCAATTCTTCCACT+TGG | - | chr1_3:56613206-56613225 | None:intergenic | 40.0% | |
| ! | GAATACAAGAAGGGCATAAG+TGG | - | chr1_3:56613245-56613264 | None:intergenic | 40.0% |
| CTCTTCAATTAGAGGAAGAG+TGG | + | chr1_3:56613392-56613411 | Msa0127390:intron | 40.0% | |
| AGCTATGAACTGTGTGTCTT+GGG | - | chr1_3:56613420-56613439 | None:intergenic | 40.0% | |
| TAGCTATGAACTGTGTGTCT+TGG | - | chr1_3:56613421-56613440 | None:intergenic | 40.0% | |
| ! | AGCAGCCTTTGTCTTTTCAA+TGG | + | chr1_3:56613537-56613556 | Msa0127390:intron | 40.0% |
| ! | GCCTTTGTCTTTTCAATGGA+TGG | + | chr1_3:56613541-56613560 | Msa0127390:intron | 40.0% |
| AGATAATTCCTGGACTTGAC+AGG | - | chr1_3:56613847-56613866 | None:intergenic | 40.0% | |
| ! | ATTTTCTCACGAGGTTCGTA+AGG | - | chr1_3:56613875-56613894 | None:intergenic | 40.0% |
| ! | CAAAATGGGATTTTCTCACG+AGG | - | chr1_3:56613884-56613903 | None:intergenic | 40.0% |
| ! | CTCGTGAGAAAATCCCATTT+TGG | + | chr1_3:56613882-56613901 | Msa0127390:CDS | 40.0% |
| ! | TGGAAAAGGTTAGGTTGCAA+TGG | + | chr1_3:56613902-56613921 | Msa0127390:intron | 40.0% |
| !! | ACCGATTTGATGTGTCTTCA+AGG | + | chr1_3:56614149-56614168 | Msa0127390:intron | 40.0% |
| GCCTTGAAGACACATCAAAT+CGG | - | chr1_3:56614153-56614172 | None:intergenic | 40.0% | |
| ATCAGGATGTTCACTAGAAG+TGG | + | chr1_3:56614256-56614275 | Msa0127390:intron | 40.0% | |
| GATGTTCACTAGAAGTGGTT+GGG | + | chr1_3:56614261-56614280 | Msa0127390:CDS | 40.0% | |
| GAAAAGCGACTTAATGATGG+AGG | + | chr1_3:56614291-56614310 | Msa0127390:CDS | 40.0% | |
| GGGAGTGGGAGATAAAATAT+TGG | - | chr1_3:56614406-56614425 | None:intergenic | 40.0% | |
| !! | GTGCAGAAAGTACTGAATAC+TGG | + | chr1_3:56614523-56614542 | Msa0127390:intron | 40.0% |
| !!! | TTTGCTTTTTGCTCTGCTAC+AGG | + | chr1_3:56614600-56614619 | Msa0127390:intron | 40.0% |
| AGAGGCTATCAGTATGTACA+AGG | + | chr1_3:56614687-56614706 | Msa0127390:CDS | 40.0% | |
| ! | AAGCCTCTTTTCACTAGATG+AGG | + | chr1_3:56614789-56614808 | Msa0127390:intron | 40.0% |
| ACACCTCATCTAGTGAAAAG+AGG | - | chr1_3:56614795-56614814 | None:intergenic | 40.0% | |
| TTTGGGCTCAAATGCACATT+TGG | + | chr1_3:56615136-56615155 | Msa0127390:intron | 40.0% | |
| ! | TTGGTCCTTCGTCTCATTTT+TGG | + | chr1_3:56615247-56615266 | Msa0127390:intron | 40.0% |
| !! | TGGTCCTTCGTCTCATTTTT+GGG | + | chr1_3:56615248-56615267 | Msa0127390:intron | 40.0% |
| ATGACCCAAAAATGAGACGA+AGG | - | chr1_3:56615255-56615274 | None:intergenic | 40.0% | |
| AGTGACCCAAAAATGAGACA+AGG | + | chr1_3:56615402-56615421 | Msa0127390:intron | 40.0% | |
| GTGACCCAAAAATGAGACAA+GGG | + | chr1_3:56615403-56615422 | Msa0127390:intron | 40.0% | |
| !! | TGGTCCCTTGTCTCATTTTT+GGG | - | chr1_3:56615410-56615429 | None:intergenic | 40.0% |
| ! | TTGGTCCCTTGTCTCATTTT+TGG | - | chr1_3:56615411-56615430 | None:intergenic | 40.0% |
| TATCATGGAGCCAACAAAAG+AGG | - | chr1_3:56615860-56615879 | None:intergenic | 40.0% | |
| ! | CTGAGAAGATGTTTTCCGTA+TGG | + | chr1_3:56615955-56615974 | Msa0127390:intron | 40.0% |
| AAGAGAAACTACATGGAGCA+AGG | + | chr1_3:56616104-56616123 | Msa0127390:CDS | 40.0% | |
| CTACATGGAGCAAGGTTTAT+TGG | + | chr1_3:56616112-56616131 | Msa0127390:CDS | 40.0% | |
| GAGCAAGGTTTATTGGGAAA+TGG | + | chr1_3:56616119-56616138 | Msa0127390:CDS | 40.0% | |
| ACCTCCAAAAATAGACCCTA+TGG | - | chr1_3:56616373-56616392 | None:intergenic | 40.0% | |
| ATAGGCCTAACAGGTTACAT+AGG | - | chr1_3:56616592-56616611 | None:intergenic | 40.0% | |
| CATATGTGTATCTGCTCTTC+TGG | - | chr1_3:56616615-56616634 | None:intergenic | 40.0% | |
| TACTGGGACTTCAACAACTT+AGG | + | chr1_3:56616887-56616906 | Msa0127390:intron | 40.0% | |
| TGTCGCTGGAGATAAAAACA+AGG | + | chr1_3:56616971-56616990 | Msa0127390:CDS | 40.0% | |
| ATGACACCATTAGAGAGAGT+TGG | + | chr1_3:56617153-56617172 | Msa0127390:intron | 40.0% | |
| TGACACCATTAGAGAGAGTT+GGG | + | chr1_3:56617154-56617173 | Msa0127390:intron | 40.0% | |
| TGGTAGAAAATAGGCTTAGG+TGG | + | chr1_3:56617199-56617218 | Msa0127390:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | + | chr1_3:56617204-56617223 | Msa0127390:intron | 40.0% | |
| ATGAAGAGTAGATCAGATGG+AGG | + | chr1_3:56617254-56617273 | Msa0127390:intron | 40.0% | |
| ! | CATGAATTATGTGGGAGCAT+GGG | + | chr1_3:56617502-56617521 | Msa0127390:intron | 40.0% |
| ! | ATGAATTATGTGGGAGCATG+GGG | + | chr1_3:56617503-56617522 | Msa0127390:intron | 40.0% |
| CTATCAAGTTCCCTTTGCTA+TGG | - | chr1_3:56617529-56617548 | None:intergenic | 40.0% | |
| CCAGTACTTGAATAAAGGGT+AGG | - | chr1_3:56617625-56617644 | None:intergenic | 40.0% | |
| CCTACCCTTTATTCAAGTAC+TGG | + | chr1_3:56617622-56617641 | Msa0127390:intron | 40.0% | |
| ATATATCACGGACAAGAACC+TGG | - | chr1_3:56617661-56617680 | None:intergenic | 40.0% | |
| AGGTTCTTGTCCGTGATATA+TGG | + | chr1_3:56617660-56617679 | Msa0127390:intron | 40.0% | |
| GCCACAGCAAATCTTTAACT+TGG | + | chr1_3:56617839-56617858 | Msa0127390:three_prime_UTR | 40.0% | |
| TAAGATGAACTTGTCTCCCA+AGG | - | chr1_3:56617867-56617886 | None:intergenic | 40.0% | |
| GATCATTATCTTGTGCCCTA+AGG | - | chr1_3:56618010-56618029 | None:intergenic | 40.0% | |
| TAAGAGAACCTACCATAGGG+CGG | - | chr1_3:56612334-56612353 | None:intergenic | 45.0% | |
| GCTGTGCTGTATGGTCTAAT+TGG | + | chr1_3:56612387-56612406 | Msa0127390:intron | 45.0% | |
| !! | GGATGACTTTTGTTGTGTGG+AGG | + | chr1_3:56612632-56612651 | Msa0127390:intron | 45.0% |
| !! | GACTTTTGTTGTGTGGAGGA+TGG | + | chr1_3:56612636-56612655 | Msa0127390:intron | 45.0% |
| GTTAGTGTTCGTAGTCGTCT+TGG | + | chr1_3:56612910-56612929 | Msa0127390:intron | 45.0% | |
| ! | CACCACCTTTTCCAGATAGA+GGG | - | chr1_3:56612963-56612982 | None:intergenic | 45.0% |
| CTAGAGTTTCTCTGACCTGA+TGG | + | chr1_3:56612984-56613003 | Msa0127390:intron | 45.0% | |
| AATGGTAGAGACCTCTCAAC+AGG | + | chr1_3:56613028-56613047 | Msa0127390:intron | 45.0% | |
| !! | CAATTGGTTAGCCTGTTGAG+AGG | - | chr1_3:56613042-56613061 | None:intergenic | 45.0% |
| TGAATGGCTCGTGATGTGTT+GGG | - | chr1_3:56613070-56613089 | None:intergenic | 45.0% | |
| ATGAATGGCTCGTGATGTGT+TGG | - | chr1_3:56613071-56613090 | None:intergenic | 45.0% | |
| AAAGACAAAGGCTGCTCATG+TGG | - | chr1_3:56613533-56613552 | None:intergenic | 45.0% | |
| GGATGTTCACTAGAAGTGGT+TGG | + | chr1_3:56614260-56614279 | Msa0127390:intron | 45.0% | |
| GGGGCAAATAAAAAGGGAGT+GGG | - | chr1_3:56614420-56614439 | None:intergenic | 45.0% | |
| CTGCAATTCTCCAAGATTGG+GGG | - | chr1_3:56614439-56614458 | None:intergenic | 45.0% | |
| GCTGCAATTCTCCAAGATTG+GGG | - | chr1_3:56614440-56614459 | None:intergenic | 45.0% | |
| GGCTGCAATTCTCCAAGATT+GGG | - | chr1_3:56614441-56614460 | None:intergenic | 45.0% | |
| AGGCTGCAATTCTCCAAGAT+TGG | - | chr1_3:56614442-56614461 | None:intergenic | 45.0% | |
| GAATACTGGACAATAGGCAG+TGG | + | chr1_3:56614537-56614556 | Msa0127390:intron | 45.0% | |
| GGCTATCAGTATGTACAAGG+AGG | + | chr1_3:56614690-56614709 | Msa0127390:CDS | 45.0% | |
| AAGTATGCACCCATTAGGTG+AGG | + | chr1_3:56615013-56615032 | Msa0127390:intron | 45.0% | |
| TGTAGCTGACCTCACCTAAT+GGG | - | chr1_3:56615025-56615044 | None:intergenic | 45.0% | |
| TTGTAGCTGACCTCACCTAA+TGG | - | chr1_3:56615026-56615045 | None:intergenic | 45.0% | |
| CCAACAAAAGAGGCAAACGA+AGG | - | chr1_3:56615850-56615869 | None:intergenic | 45.0% | |
| ! | CCTTCGTTTGCCTCTTTTGT+TGG | + | chr1_3:56615847-56615866 | Msa0127390:intron | 45.0% |
| CAAAAAGGAAGCGAGCCATA+CGG | - | chr1_3:56615973-56615992 | None:intergenic | 45.0% | |
| TGAGACAATGCAGCATAAGC+AGG | - | chr1_3:56616279-56616298 | None:intergenic | 45.0% | |
| !!! | CAGGTTTTGATGGTGTCTCA+CGG | - | chr1_3:56616311-56616330 | None:intergenic | 45.0% |
| ATTACCTTTGCTAGGGCCAT+AGG | + | chr1_3:56616354-56616373 | Msa0127390:intron | 45.0% | |
| TTACCTTTGCTAGGGCCATA+GGG | + | chr1_3:56616355-56616374 | Msa0127390:intron | 45.0% | |
| ! | AGGGCCATAGGGTCTATTTT+TGG | + | chr1_3:56616366-56616385 | Msa0127390:intron | 45.0% |
| !!! | GCCATAGGGTCTATTTTTGG+AGG | + | chr1_3:56616369-56616388 | Msa0127390:intron | 45.0% |
| GCATGCCTATGTAACCTGTT+AGG | + | chr1_3:56616584-56616603 | Msa0127390:intron | 45.0% | |
| GTGTATCTGCTCTTCTGGAT+AGG | - | chr1_3:56616610-56616629 | None:intergenic | 45.0% | |
| !! | ATCCTTGGTGTCATGAGTAC+TGG | + | chr1_3:56616870-56616889 | Msa0127390:intron | 45.0% |
| !! | TCCTTGGTGTCATGAGTACT+GGG | + | chr1_3:56616871-56616890 | Msa0127390:intron | 45.0% |
| TCAAAAGGTTCTGTTGTCGC+TGG | + | chr1_3:56616957-56616976 | Msa0127390:CDS | 45.0% | |
| CGCTGGAGATAAAAACAAGG+AGG | + | chr1_3:56616974-56616993 | Msa0127390:CDS | 45.0% | |
| GACACACACTACAAGGATGT+AGG | - | chr1_3:56617012-56617031 | None:intergenic | 45.0% | |
| ATCCTTGTAGTGTGTGTCTC+TGG | + | chr1_3:56617014-56617033 | Msa0127390:intron | 45.0% | |
| ATCCAGAGACACACACTACA+AGG | - | chr1_3:56617019-56617038 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGTTG+GGG | + | chr1_3:56617155-56617174 | Msa0127390:intron | 45.0% | |
| ACTACCCCAACTCTCTCTAA+TGG | - | chr1_3:56617162-56617181 | None:intergenic | 45.0% | |
| TAGATCAGATGGAGGAGAGT+CGG | + | chr1_3:56617262-56617281 | Msa0127390:intron | 45.0% | |
| ! | ACTAAGTGGGTTCGACTACA+TGG | - | chr1_3:56617396-56617415 | None:intergenic | 45.0% |
| ATGTAGTCGAACCCACTTAG+TGG | + | chr1_3:56617395-56617414 | Msa0127390:intron | 45.0% | |
| TGTAGTCGAACCCACTTAGT+GGG | + | chr1_3:56617396-56617415 | Msa0127390:intron | 45.0% | |
| ! | GAAGCCTTATCCCACTAAGT+GGG | - | chr1_3:56617409-56617428 | None:intergenic | 45.0% |
| GCATGAATTATGTGGGAGCA+TGG | + | chr1_3:56617501-56617520 | Msa0127390:intron | 45.0% | |
| GAATAAAGGGTAGGACACTG+AGG | - | chr1_3:56617616-56617635 | None:intergenic | 45.0% | |
| AAAGACGCCAGTATGATCCA+GGG | - | chr1_3:56617709-56617728 | None:intergenic | 45.0% | |
| GGGAGACAAGTTCATCTTAG+AGG | + | chr1_3:56617868-56617887 | Msa0127390:three_prime_UTR | 45.0% | |
| !! | ATATATGAAATATTATTTAA+CGG | + | chr1_3:56612849-56612868 | Msa0127390:intron | 5.0% |
| !! | AGTAAATTATTATTAATATA+TGG | - | chr1_3:56614867-56614886 | None:intergenic | 5.0% |
| !! | ATATATTAATAATAATTTAC+TGG | + | chr1_3:56614866-56614885 | Msa0127390:intron | 5.0% |
| !!! | GAAATTTTATTAATTTAATT+TGG | + | chr1_3:56615118-56615137 | Msa0127390:intron | 5.0% |
| !!! | ATAATTTTTTTTTAAAATAG+GGG | - | chr1_3:56615165-56615184 | None:intergenic | 5.0% |
| !!! | CATAATTTTTTTTTAAAATA+GGG | - | chr1_3:56615166-56615185 | None:intergenic | 5.0% |
| !!! | ACATAATTTTTTTTTAAAAT+AGG | - | chr1_3:56615167-56615186 | None:intergenic | 5.0% |
| !!! | TTTAAAAAAAAATTATGTTT+TGG | + | chr1_3:56615169-56615188 | Msa0127390:intron | 5.0% |
| !! | AAATTAAAAAAAGTAAAATA+CGG | - | chr1_3:56615228-56615247 | None:intergenic | 5.0% |
| !!! | TATTTTACTTTTTTTAATTT+TGG | + | chr1_3:56615228-56615247 | Msa0127390:intron | 5.0% |
| !! | TATATTTAATAGAAAATTAA+AGG | - | chr1_3:56615512-56615531 | None:intergenic | 5.0% |
| TCTGCAGCTACCCAGAAGAT+GGG | - | chr1_3:56612067-56612086 | None:intergenic | 50.0% | |
| TTCTGCAGCTACCCAGAAGA+TGG | - | chr1_3:56612068-56612087 | None:intergenic | 50.0% | |
| ! | ATAGGGCGGACTTGTGCATT+AGG | - | chr1_3:56612320-56612339 | None:intergenic | 50.0% |
| TAATGCACAAGTCCGCCCTA+TGG | + | chr1_3:56612319-56612338 | Msa0127390:CDS | 50.0% | |
| ! | CACCTTTTCCAGATAGAGGG+CGG | - | chr1_3:56612960-56612979 | None:intergenic | 50.0% |
| ! | CCACCACCTTTTCCAGATAG+AGG | - | chr1_3:56612964-56612983 | None:intergenic | 50.0% |
| CCTCTATCTGGAAAAGGTGG+TGG | + | chr1_3:56612961-56612980 | Msa0127390:intron | 50.0% | |
| CAGATTTGCCTGTCAAGTCC+AGG | + | chr1_3:56613836-56613855 | Msa0127390:CDS | 50.0% | |
| GGGGGCAAATAAAAAGGGAG+TGG | - | chr1_3:56614421-56614440 | None:intergenic | 50.0% | |
| CGTGAGACACCATCAAAACC+TGG | + | chr1_3:56616309-56616328 | Msa0127390:intron | 50.0% | |
| !! | CCAATCGGACCAGGTTTTGA+TGG | - | chr1_3:56616321-56616340 | None:intergenic | 50.0% |
| CCATCAAAACCTGGTCCGAT+TGG | + | chr1_3:56616318-56616337 | Msa0127390:intron | 50.0% | |
| CTACTCAATCCAATCGGACC+AGG | - | chr1_3:56616330-56616349 | None:intergenic | 50.0% | |
| CTCTTCTGGATAGGCCTAAC+AGG | - | chr1_3:56616601-56616620 | None:intergenic | 50.0% | |
| TCCCAGTACTCATGACACCA+AGG | - | chr1_3:56616875-56616894 | None:intergenic | 50.0% | |
| CGAACCCACTTAGTGGGATA+AGG | + | chr1_3:56617402-56617421 | Msa0127390:intron | 50.0% | |
| ! | CGAAGCCTTATCCCACTAAG+TGG | - | chr1_3:56617410-56617429 | None:intergenic | 50.0% |
| CGTTTCTCCCTGGATCATAC+TGG | + | chr1_3:56617699-56617718 | Msa0127390:CDS | 50.0% | |
| CAAAGACGCCAGTATGATCC+AGG | - | chr1_3:56617710-56617729 | None:intergenic | 50.0% | |
| GGATCATACTGGCGTCTTTG+TGG | + | chr1_3:56617710-56617729 | Msa0127390:CDS | 50.0% | |
| CATACTGGCGTCTTTGTGGA+CGG | + | chr1_3:56617714-56617733 | Msa0127390:CDS | 50.0% | |
| AAGGATTGCCGCCCTCTATC+TGG | + | chr1_3:56612949-56612968 | Msa0127390:intron | 55.0% | |
| TGCCGCCCTCTATCTGGAAA+AGG | + | chr1_3:56612955-56612974 | Msa0127390:intron | 55.0% | |
| CGCCCTCTATCTGGAAAAGG+TGG | + | chr1_3:56612958-56612977 | Msa0127390:intron | 55.0% | |
| GGCAGTGGCCCTTTCTTCTA+TGG | + | chr1_3:56614552-56614571 | Msa0127390:intron | 55.0% | |
| ACGAACTCTGCGTGCTCGTA+TGG | + | chr1_3:56616161-56616180 | Msa0127390:CDS | 55.0% | |
| AGACCCTATGGCCCTAGCAA+AGG | - | chr1_3:56616361-56616380 | None:intergenic | 55.0% | |
| TCTGCTGCGCAGAACCTTTC+TGG | + | chr1_3:56616458-56616477 | Msa0127390:intron | 55.0% | |
| CTGCTGCGCAGAACCTTTCT+GGG | + | chr1_3:56616459-56616478 | Msa0127390:intron | 55.0% | |
| GAGGAGAGTCGGATCAGAAG+AGG | + | chr1_3:56617273-56617292 | Msa0127390:intron | 55.0% | |
| GAGCATGGGGCCATAGCAAA+GGG | + | chr1_3:56617516-56617535 | Msa0127390:intron | 55.0% | |
| GAGAAGGCTTCGTTTCTCCC+TGG | + | chr1_3:56617689-56617708 | Msa0127390:CDS | 55.0% | |
| GCACAAGTCCGCCCTATGGT+AGG | + | chr1_3:56612323-56612342 | Msa0127390:intron | 60.0% | |
| GGAGCATGGGGCCATAGCAA+AGG | + | chr1_3:56617515-56617534 | Msa0127390:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56611920 | 56618098 | 56611920 | ID=Msa0127390;Name=Msa0127390 |
| chr1_3 | mRNA | 56611920 | 56618098 | 56611920 | ID=Msa0127390-mRNA-1;Parent=Msa0127390;Name=Msa0127390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=74|1|1|1|1|1|10|341|288 |
| chr1_3 | exon | 56611920 | 56612158 | 56611920 | ID=Msa0127390-mRNA-1:exon:17930;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56612254 | 56612340 | 56612254 | ID=Msa0127390-mRNA-1:exon:17931;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56613830 | 56613909 | 56613830 | ID=Msa0127390-mRNA-1:exon:17932;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56614261 | 56614312 | 56614261 | ID=Msa0127390-mRNA-1:exon:17933;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56614622 | 56614711 | 56614622 | ID=Msa0127390-mRNA-1:exon:17934;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56615903 | 56615971 | 56615903 | ID=Msa0127390-mRNA-1:exon:17935;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56616081 | 56616182 | 56616081 | ID=Msa0127390-mRNA-1:exon:17936;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56616757 | 56616825 | 56616757 | ID=Msa0127390-mRNA-1:exon:17937;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56616939 | 56616995 | 56616939 | ID=Msa0127390-mRNA-1:exon:17938;Parent=Msa0127390-mRNA-1 |
| chr1_3 | exon | 56617662 | 56618098 | 56617662 | ID=Msa0127390-mRNA-1:exon:17939;Parent=Msa0127390-mRNA-1 |
| chr1_3 | five_prime_UTR | 56611920 | 56611993 | 56611920 | ID=Msa0127390-mRNA-1:five_prime_utr;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56611994 | 56612158 | 56611994 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56612254 | 56612340 | 56612254 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56613830 | 56613909 | 56613830 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56614261 | 56614312 | 56614261 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56614622 | 56614711 | 56614622 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56615903 | 56615971 | 56615903 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56616081 | 56616182 | 56616081 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56616757 | 56616825 | 56616757 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56616939 | 56616995 | 56616939 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | CDS | 56617662 | 56617757 | 56617662 | ID=Msa0127390-mRNA-1:cds;Parent=Msa0127390-mRNA-1 |
| chr1_3 | three_prime_UTR | 56617758 | 56618098 | 56617758 | ID=Msa0127390-mRNA-1:three_prime_utr;Parent=Msa0127390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
