Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079820 | XP_003591058.1 | 93.266 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079820 | G7I7H3 | 93.266 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000100 | Msa0079820 | 0.814995 | 1.159824e-51 | -8.615850e-47 |
| Msa0011960 | Msa0079820 | 0.802264 | 6.093038e-49 | -8.615850e-47 |
| Msa0019390 | Msa0079820 | 0.848261 | 6.858601e-60 | -8.615850e-47 |
| Msa0021220 | Msa0079820 | 0.807248 | 5.545781e-50 | -8.615850e-47 |
| Msa0022970 | Msa0079820 | 0.851924 | 6.465413e-61 | -8.615850e-47 |
| Msa0029270 | Msa0079820 | 0.812156 | 4.884275e-51 | -8.615850e-47 |
| Msa0030200 | Msa0079820 | 0.807457 | 5.006785e-50 | -8.615850e-47 |
| Msa0032090 | Msa0079820 | 0.824762 | 6.770613e-54 | -8.615850e-47 |
| Msa0032430 | Msa0079820 | 0.802036 | 6.786380e-49 | -8.615850e-47 |
| Msa0032580 | Msa0079820 | 0.865307 | 6.494262e-65 | -8.615850e-47 |
| Msa0033130 | Msa0079820 | 0.943895 | 5.264054e-103 | -8.615850e-47 |
| Msa0040690 | Msa0079820 | 0.823764 | 1.161867e-53 | -8.615850e-47 |
| Msa0042280 | Msa0079820 | 0.802360 | 5.821139e-49 | -8.615850e-47 |
| Msa0043660 | Msa0079820 | 0.878411 | 2.870646e-69 | -8.615850e-47 |
| Msa0047160 | Msa0079820 | 0.842012 | 3.352345e-58 | -8.615850e-47 |
| Msa0053600 | Msa0079820 | 0.836357 | 9.810336e-57 | -8.615850e-47 |
| Msa0054440 | Msa0079820 | 0.832106 | 1.141860e-55 | -8.615850e-47 |
| Msa0054480 | Msa0079820 | 0.801064 | 1.074118e-48 | -8.615850e-47 |
| Msa0067630 | Msa0079820 | 0.811191 | 7.921153e-51 | -8.615850e-47 |
| Msa0070700 | Msa0079820 | 0.850301 | 1.855454e-60 | -8.615850e-47 |
| Msa0079380 | Msa0079820 | 0.804348 | 2.255386e-49 | -8.615850e-47 |
| Msa0079820 | Msa0080200 | 0.818400 | 1.999692e-52 | -8.615850e-47 |
| Msa0079820 | Msa0090080 | 0.808596 | 2.865442e-50 | -8.615850e-47 |
| Msa0079820 | Msa0094470 | 0.835522 | 1.598197e-56 | -8.615850e-47 |
| Msa0079820 | Msa0098480 | 0.800265 | 1.562664e-48 | -8.615850e-47 |
| Msa0079820 | Msa0099220 | 0.855935 | 4.517790e-62 | -8.615850e-47 |
| Msa0079820 | Msa0105620 | 0.820961 | 5.202013e-53 | -8.615850e-47 |
| Msa0079820 | Msa0115130 | 0.864153 | 1.492208e-64 | -8.615850e-47 |
| Msa0079820 | Msa0118590 | 0.860823 | 1.578859e-63 | -8.615850e-47 |
| Msa0079820 | Msa0118710 | 0.850173 | 2.014473e-60 | -8.615850e-47 |
| Msa0079820 | Msa0127020 | 0.817376 | 3.404579e-52 | -8.615850e-47 |
| Msa0079820 | Msa0127050 | 0.803876 | 2.828288e-49 | -8.615850e-47 |
| Msa0079820 | Msa0127390 | 0.957958 | 7.664942e-116 | -8.615850e-47 |
| Msa0079820 | Msa0137550 | 0.872266 | 3.630165e-67 | -8.615850e-47 |
| Msa0079820 | Msa0144370 | 0.865057 | 7.781607e-65 | -8.615850e-47 |
| Msa0079820 | Msa0146770 | 0.841502 | 4.572025e-58 | -8.615850e-47 |
| Msa0079820 | Msa0159170 | 0.830772 | 2.433002e-55 | -8.615850e-47 |
| Msa0079820 | Msa0159340 | 0.800846 | 1.189759e-48 | -8.615850e-47 |
| Msa0079820 | Msa0165660 | 0.899882 | 1.275171e-77 | -8.615850e-47 |
| Msa0079820 | Msa0169280 | 0.814022 | 1.903878e-51 | -8.615850e-47 |
| Msa0079820 | Msa0170200 | 0.820182 | 7.849880e-53 | -8.615850e-47 |
| Msa0079820 | Msa0172070 | 0.806922 | 6.500988e-50 | -8.615850e-47 |
| Msa0079820 | Msa0172970 | 0.860416 | 2.096951e-63 | -8.615850e-47 |
| Msa0079820 | Msa0189300 | 0.849447 | 3.214191e-60 | -8.615850e-47 |
| Msa0079820 | Msa0202020 | 0.815633 | 8.363231e-52 | -8.615850e-47 |
| Msa0079820 | Msa0220720 | 0.856935 | 2.298440e-62 | -8.615850e-47 |
| Msa0079820 | Msa0231660 | 0.858908 | 5.961879e-63 | -8.615850e-47 |
| Msa0079820 | Msa0244780 | 0.802302 | 5.984829e-49 | -8.615850e-47 |
| Msa0079820 | Msa0262050 | 0.816226 | 6.168861e-52 | -8.615850e-47 |
| Msa0079820 | Msa0262310 | 0.813129 | 2.993091e-51 | -8.615850e-47 |
| Msa0079820 | Msa0279240 | 0.814808 | 1.275729e-51 | -8.615850e-47 |
| Msa0079820 | Msa0289580 | 0.805236 | 1.471478e-49 | -8.615850e-47 |
| Msa0079820 | Msa0289610 | 0.818001 | 2.461428e-52 | -8.615850e-47 |
| Msa0079820 | Msa0298990 | 0.800943 | 1.137013e-48 | -8.615850e-47 |
| Msa0079820 | Msa0299870 | 0.841228 | 5.397599e-58 | -8.615850e-47 |
| Msa0079820 | Msa0309750 | 0.827060 | 1.927316e-54 | -8.615850e-47 |
| Msa0079820 | Msa0327300 | 0.827751 | 1.315630e-54 | -8.615850e-47 |
| Msa0079820 | Msa0327330 | 0.803364 | 3.611722e-49 | -8.615850e-47 |
| Msa0079820 | Msa0337240 | 0.851502 | 8.512574e-61 | -8.615850e-47 |
| Msa0079820 | Msa0337650 | 0.809839 | 1.551787e-50 | -8.615850e-47 |
| Msa0079820 | Msa0341040 | 0.819265 | 1.271670e-52 | -8.615850e-47 |
| Msa0079820 | Msa0397540 | 0.804528 | 2.068852e-49 | -8.615850e-47 |
| Msa0079820 | Msa0402650 | 0.812853 | 3.439246e-51 | -8.615850e-47 |
| Msa0079820 | Msa0449210 | 0.820894 | 5.389136e-53 | -8.615850e-47 |
| Msa0079820 | Msa0482130 | 0.813539 | 2.431943e-51 | -8.615850e-47 |
| Msa0079820 | Msa0526540 | 0.811877 | 5.619852e-51 | -8.615850e-47 |
| Msa0079820 | Msa0529830 | 0.809793 | 1.587460e-50 | -8.615850e-47 |
| Msa0079820 | Msa0542090 | 0.838775 | 2.353533e-57 | -8.615850e-47 |
| Msa0079820 | Msa0542130 | 0.838026 | 3.671951e-57 | -8.615850e-47 |
| Msa0079820 | Msa0554290 | 0.838658 | 2.523147e-57 | -8.615850e-47 |
| Msa0079820 | Msa0554920 | 0.836834 | 7.416600e-57 | -8.615850e-47 |
| Msa0079820 | Msa0576940 | 0.815300 | 9.923690e-52 | -8.615850e-47 |
| Msa0079820 | Msa0581280 | 0.843632 | 1.243622e-58 | -8.615850e-47 |
| Msa0079820 | Msa0585510 | 0.801079 | 1.066336e-48 | -8.615850e-47 |
| Msa0079820 | Msa0603320 | 0.815698 | 8.089017e-52 | -8.615850e-47 |
| Msa0079820 | Msa0605000 | 0.832584 | 8.696913e-56 | -8.615850e-47 |
| Msa0079820 | Msa0608500 | 0.834658 | 2.638317e-56 | -8.615850e-47 |
| Msa0079820 | Msa0612390 | 0.827688 | 1.362291e-54 | -8.615850e-47 |
| Msa0079820 | Msa0615440 | 0.837077 | 6.431735e-57 | -8.615850e-47 |
| Msa0079820 | Msa0643570 | 0.802017 | 6.847583e-49 | -8.615850e-47 |
| Msa0079820 | Msa0648780 | 0.823429 | 1.391811e-53 | -8.615850e-47 |
| Msa0079820 | Msa0649020 | 0.807411 | 5.120826e-50 | -8.615850e-47 |
| Msa0079820 | Msa0660490 | 0.810488 | 1.124142e-50 | -8.615850e-47 |
| Msa0079820 | Msa0660850 | 0.859756 | 3.319447e-63 | -8.615850e-47 |
| Msa0079820 | Msa0685140 | 0.840328 | 9.293057e-58 | -8.615850e-47 |
| Msa0079820 | Msa0689260 | 0.819437 | 1.161756e-52 | -8.615850e-47 |
| Msa0079820 | Msa0691530 | 0.817746 | 2.810267e-52 | -8.615850e-47 |
| Msa0079820 | Msa0698490 | 0.840011 | 1.124041e-57 | -8.615850e-47 |
| Msa0079820 | Msa0698660 | 0.840615 | 7.814783e-58 | -8.615850e-47 |
| Msa0079820 | Msa0709040 | 0.826202 | 3.088336e-54 | -8.615850e-47 |
| Msa0079820 | Msa0711780 | 0.806387 | 8.431803e-50 | -8.615850e-47 |
| Msa0079820 | Msa0715650 | 0.844278 | 8.348326e-59 | -8.615850e-47 |
| Msa0079820 | Msa0719420 | 0.877479 | 6.080354e-69 | -8.615850e-47 |
| Msa0079820 | Msa0719610 | 0.809638 | 1.713793e-50 | -8.615850e-47 |
| Msa0079820 | Msa0738100 | 0.805093 | 1.576478e-49 | -8.615850e-47 |
| Msa0079820 | Msa0757940 | 0.850529 | 1.601280e-60 | -8.615850e-47 |
| Msa0079820 | Msa0763330 | 0.832888 | 7.310180e-56 | -8.615850e-47 |
| Msa0079820 | Msa0772480 | 0.857966 | 1.138427e-62 | -8.615850e-47 |
| Msa0079820 | Msa0780490 | 0.801225 | 9.955552e-49 | -8.615850e-47 |
| Msa0079820 | Msa0789680 | 0.879241 | 1.463012e-69 | -8.615850e-47 |
| Msa0079820 | Msa0794670 | 0.804276 | 2.334503e-49 | -8.615850e-47 |
| Msa0079820 | Msa0798440 | 0.853819 | 1.857365e-61 | -8.615850e-47 |
| Msa0079820 | Msa0799260 | 0.863672 | 2.105790e-64 | -8.615850e-47 |
| Msa0079820 | Msa0799310 | 0.859482 | 4.013309e-63 | -8.615850e-47 |
| Msa0079820 | Msa0802410 | 0.862711 | 4.176967e-64 | -8.615850e-47 |
| Msa0079820 | Msa0830040 | 0.803384 | 3.576884e-49 | -8.615850e-47 |
| Msa0079820 | Msa0830540 | 0.823552 | 1.302302e-53 | -8.615850e-47 |
| Msa0079820 | Msa0831530 | 0.800467 | 1.421937e-48 | -8.615850e-47 |
| Msa0079820 | Msa0837630 | 0.840155 | 1.031121e-57 | -8.615850e-47 |
| Msa0079820 | Msa0869130 | 0.824221 | 9.078416e-54 | -8.615850e-47 |
| Msa0079820 | Msa0909950 | 0.850999 | 1.180340e-60 | -8.615850e-47 |
| Msa0079820 | Msa0925770 | 0.823923 | 1.066496e-53 | -8.615850e-47 |
| Msa0079820 | Msa0930490 | 0.822859 | 1.890101e-53 | -8.615850e-47 |
| Msa0079820 | Msa0933300 | 0.815572 | 8.631185e-52 | -8.615850e-47 |
| Msa0079820 | Msa0945440 | 0.843003 | 1.829593e-58 | -8.615850e-47 |
| Msa0079820 | Msa0989540 | 0.818872 | 1.562675e-52 | -8.615850e-47 |
| Msa0079820 | Msa1006840 | 0.812504 | 4.100440e-51 | -8.615850e-47 |
| Msa0079820 | Msa1009820 | 0.829499 | 4.974455e-55 | -8.615850e-47 |
| Msa0079820 | Msa1011680 | 0.832158 | 1.109110e-55 | -8.615850e-47 |
| Msa0079820 | Msa1019240 | 0.800882 | 1.170185e-48 | -8.615850e-47 |
| Msa0079820 | Msa1043690 | 0.808499 | 3.004992e-50 | -8.615850e-47 |
| Msa0079820 | Msa1051200 | 0.825091 | 5.662925e-54 | -8.615850e-47 |
| Msa0079820 | Msa1077030 | 0.810049 | 1.398155e-50 | -8.615850e-47 |
| Msa0079820 | Msa1084470 | 0.822497 | 2.295763e-53 | -8.615850e-47 |
| Msa0079820 | Msa1088490 | 0.814617 | 1.406139e-51 | -8.615850e-47 |
| Msa0079820 | Msa1104140 | 0.838056 | 3.608108e-57 | -8.615850e-47 |
| Msa0079820 | Msa1104210 | 0.806640 | 7.455747e-50 | -8.615850e-47 |
| Msa0079820 | Msa1106700 | 0.800063 | 1.717897e-48 | -8.615850e-47 |
| Msa0079820 | Msa1108820 | 0.820586 | 6.342926e-53 | -8.615850e-47 |
| Msa0079820 | Msa1135890 | 0.839811 | 1.267607e-57 | -8.615850e-47 |
| Msa0079820 | Msa1137700 | 0.847189 | 1.353737e-59 | -8.615850e-47 |
| Msa0079820 | Msa1138870 | 0.801610 | 8.302436e-49 | -8.615850e-47 |
| Msa0079820 | Msa1153060 | 0.820148 | 7.995147e-53 | -8.615850e-47 |
| Msa0079820 | Msa1197320 | 0.819410 | 1.178402e-52 | -8.615850e-47 |
| Msa0079820 | Msa1206670 | 0.831578 | 1.541924e-55 | -8.615850e-47 |
| Msa0079820 | Msa1206850 | 0.829757 | 4.304869e-55 | -8.615850e-47 |
| Msa0079820 | Msa1209200 | 0.843715 | 1.181525e-58 | -8.615850e-47 |
| Msa0079820 | Msa1209260 | 0.831891 | 1.290445e-55 | -8.615850e-47 |
| Msa0079820 | Msa1218730 | 0.824525 | 7.698266e-54 | -8.615850e-47 |
| Msa0079820 | Msa1224810 | 0.816329 | 5.849544e-52 | -8.615850e-47 |
| Msa0079820 | Msa1250790 | 0.818307 | 2.098534e-52 | -8.615850e-47 |
| Msa0079820 | Msa1260530 | 0.813597 | 2.361115e-51 | -8.615850e-47 |
| Msa0079820 | Msa1265630 | 0.838529 | 2.723700e-57 | -8.615850e-47 |
| Msa0079820 | Msa1275430 | 0.817435 | 3.301868e-52 | -8.615850e-47 |
| Msa0079820 | Msa1302380 | 0.800603 | 1.333957e-48 | -8.615850e-47 |
| Msa0079820 | Msa1302850 | 0.827395 | 1.601717e-54 | -8.615850e-47 |
| Msa0079820 | Msa1331710 | 0.820946 | 5.241622e-53 | -8.615850e-47 |
| Msa0079820 | Msa1344340 | 0.821339 | 4.256402e-53 | -8.615850e-47 |
| Msa0079820 | Msa1356400 | 0.801678 | 8.037617e-49 | -8.615850e-47 |
| Msa0079820 | Msa1358250 | 0.822065 | 2.891039e-53 | -8.615850e-47 |
| Msa0079820 | Msa1363330 | 0.813508 | 2.470630e-51 | -8.615850e-47 |
| Msa0079820 | Msa1366180 | 0.835336 | 1.780111e-56 | -8.615850e-47 |
| Msa0079820 | Msa1374120 | 0.806974 | 6.339602e-50 | -8.615850e-47 |
| Msa0079820 | Msa1385100 | 0.812018 | 5.235313e-51 | -8.615850e-47 |
| Msa0079820 | Msa1386600 | 0.814265 | 1.682315e-51 | -8.615850e-47 |
| Msa0079820 | Msa1387410 | 0.827977 | 1.161171e-54 | -8.615850e-47 |
| Msa0079820 | Msa1394290 | 0.843090 | 1.734600e-58 | -8.615850e-47 |
| Msa0079820 | Msa1400580 | 0.803195 | 3.913860e-49 | -8.615850e-47 |
| Msa0079820 | Msa1403420 | 0.826139 | 3.195569e-54 | -8.615850e-47 |
| Msa0079820 | Msa1413500 | 0.802603 | 5.188217e-49 | -8.615850e-47 |
| Msa0079820 | Msa1432700 | 0.808516 | 2.980027e-50 | -8.615850e-47 |
| Msa0079820 | Msa1448690 | 0.804705 | 1.900546e-49 | -8.615850e-47 |
| Msa0079820 | Msa1457920 | 0.837622 | 4.661941e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079820 | MtrunA17_Chr1g0191441 | 93.266 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079820 | AT5G27395.2 | 53.199 | 297 | 122 | 5 | 1 | 283 | 1 | 294 | 4.53e-106 | 310 |
| Msa0079820 | AT5G27395.1 | 60.417 | 240 | 92 | 2 | 45 | 283 | 74 | 311 | 3.76e-105 | 309 |
Find 68 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTACCCTTGAGATTT+TGG | 0.137011 | 1_2:-57852778 | Msa0079820:CDS |
| CTTTCTATCATTCATGAAAA+TGG | 0.162993 | 1_2:+57857308 | None:intergenic |
| AAAGAACAATTGCAGGTTTC+TGG | 0.194264 | 1_2:+57857658 | None:intergenic |
| AAAGAAGAGACCAAAATTTA+TGG | 0.206582 | 1_2:-57851804 | Msa0079820:three_prime_UTR |
| TATACAACTACCATAAATTT+TGG | 0.226167 | 1_2:+57851794 | None:intergenic |
| CTACATGGAGCAAGGTTTAT+TGG | 0.243157 | 1_2:-57853461 | Msa0079820:CDS |
| AGGTTCTTGTCCGTGATATA+TGG | 0.262057 | 1_2:-57851912 | Msa0079820:CDS |
| TGAGATAACTACGATGCTTT+TGG | 0.269544 | 1_2:+57851829 | None:intergenic |
| TCTTAACCTTGCAATGGTAT+AGG | 0.312912 | 1_2:+57854943 | None:intergenic |
| TACATGGAGCAAGGTTTATT+GGG | 0.326398 | 1_2:-57853460 | Msa0079820:CDS |
| TTCAATCAAAGAACAATTGC+AGG | 0.330703 | 1_2:+57857651 | None:intergenic |
| TTAGGAATAAAATCAAATAT+AGG | 0.351537 | 1_2:-57851673 | Msa0079820:three_prime_UTR |
| TAAGGTTCATAGATAATTCC+TGG | 0.354644 | 1_2:+57855721 | None:intergenic |
| ACAATATTCATCCCATCTTC+TGG | 0.358168 | 1_2:-57857522 | Msa0079820:CDS |
| CAATCTTTAACTTGGTTCCT+TGG | 0.360341 | 1_2:-57851726 | Msa0079820:three_prime_UTR |
| ATAGGGCGGACTTGTGCATT+AGG | 0.363063 | 1_2:+57857258 | None:intergenic |
| GGGAGACAAGTTCATCTTAG+AGG | 0.365306 | 1_2:-57851705 | Msa0079820:three_prime_UTR |
| CTCGTGAGAAAATCCCATTT+TGG | 0.371900 | 1_2:-57855693 | Msa0079820:CDS |
| CAAAGACGCCAGTATGATCT+AGG | 0.373303 | 1_2:+57851865 | None:intergenic |
| AAATGCTAACTTGTGCCCTT+AGG | 0.383152 | 1_2:-57851582 | Msa0079820:three_prime_UTR |
| AATCTTTAACTTGGTTCCTT+GGG | 0.401031 | 1_2:-57851725 | Msa0079820:three_prime_UTR |
| ACGAACTCTGCGTGCTCGTA+TGG | 0.416956 | 1_2:-57853412 | Msa0079820:intron |
| CGTTTCTCCCTAGATCATAC+TGG | 0.420505 | 1_2:-57851873 | Msa0079820:CDS |
| GAGCAAGGTTTATTGGGAAA+TGG | 0.425014 | 1_2:-57853454 | Msa0079820:CDS |
| AGCATTTCCCATAAAAGAAA+GGG | 0.443327 | 1_2:+57851598 | None:intergenic |
| TAGCATTTCCCATAAAAGAA+AGG | 0.445907 | 1_2:+57851597 | None:intergenic |
| TTTGAAGCATATGACTCAAA+AGG | 0.457081 | 1_2:-57852631 | Msa0079820:CDS |
| AGATCATACTGGCGTCTTTG+TGG | 0.460552 | 1_2:-57851862 | Msa0079820:CDS |
| TGCCACAGCAATCTTTAACT+TGG | 0.461103 | 1_2:-57851734 | Msa0079820:three_prime_UTR |
| GATCATTATCTTGTGCCCTA+AGG | 0.461944 | 1_2:+57851566 | None:intergenic |
| ATAAACACACTTATAGCTAA+TGG | 0.463177 | 1_2:-57853670 | Msa0079820:CDS |
| CAATATTCATCCCATCTTCT+GGG | 0.465219 | 1_2:-57857521 | Msa0079820:CDS |
| TTCTGCAGCTACCCAGAAGA+TGG | 0.468511 | 1_2:+57857510 | None:intergenic |
| AATGCTAACTTGTGCCCTTA+GGG | 0.468982 | 1_2:-57851581 | Msa0079820:three_prime_UTR |
| ATGGTGACAAACACTCATTA+AGG | 0.473691 | 1_2:-57853651 | Msa0079820:CDS |
| AGAGTTCGTATCAAAACAAC+GGG | 0.491166 | 1_2:+57853426 | None:intergenic |
| ATCATTATCTTGTGCCCTAA+GGG | 0.497176 | 1_2:+57851567 | None:intergenic |
| GATGTTCACTAGAAGTGGTT+GGG | 0.506017 | 1_2:-57855314 | Msa0079820:CDS |
| AGATAATTCCTGGACTTGAC+AGG | 0.515119 | 1_2:+57855731 | None:intergenic |
| TCAAAAGGTTCTGTTGTCGC+TGG | 0.516079 | 1_2:-57852616 | Msa0079820:CDS |
| AACGAAAAGCGACTTAATGA+TGG | 0.516876 | 1_2:-57855287 | Msa0079820:CDS |
| CAGATTTGCCTGTCAAGTCC+AGG | 0.517112 | 1_2:-57855739 | Msa0079820:CDS |
| CATGTTTAGCCAAAATCTCA+AGG | 0.543474 | 1_2:+57852769 | None:intergenic |
| GGATGTTCACTAGAAGTGGT+TGG | 0.545253 | 1_2:-57855315 | Msa0079820:CDS |
| TAATGCACAAGTCCGCCCTA+TGG | 0.559235 | 1_2:-57857256 | Msa0079820:intron |
| ATCAGGATGTTCACTAGAAG+TGG | 0.562937 | 1_2:-57855319 | Msa0079820:intron |
| TTTGACATTTCGATCTACAA+TGG | 0.565734 | 1_2:-57857438 | Msa0079820:intron |
| AGAAGCGTTTGATAAAACAT+TGG | 0.580099 | 1_2:+57857481 | None:intergenic |
| TGATATATGGATATTTGAGA+AGG | 0.584780 | 1_2:-57851899 | Msa0079820:CDS |
| AAAGAAACAGTTCTATCTAG+AGG | 0.590191 | 1_2:-57854906 | Msa0079820:CDS |
| TCTGCAGCTACCCAGAAGAT+GGG | 0.592557 | 1_2:+57857511 | None:intergenic |
| AGAGGCTATCAGTATGTACA+AGG | 0.607682 | 1_2:-57854888 | Msa0079820:CDS |
| CATACTGGCGTCTTTGTGGA+CGG | 0.608607 | 1_2:-57851858 | Msa0079820:CDS |
| TAAGATGAACTTGTCTCCCA+AGG | 0.609061 | 1_2:+57851709 | None:intergenic |
| TTAAAGTAAGAGAAACTACA+TGG | 0.609989 | 1_2:-57853476 | Msa0079820:CDS |
| AAGAGAAACTACATGGAGCA+AGG | 0.613968 | 1_2:-57853469 | Msa0079820:CDS |
| TCTCAAATATCCATATATCA+CGG | 0.619706 | 1_2:+57851902 | None:intergenic |
| AAAGACGCCAGTATGATCTA+GGG | 0.622028 | 1_2:+57851866 | None:intergenic |
| AAAATGCCTATACCATTGCA+AGG | 0.627691 | 1_2:-57854949 | Msa0079820:CDS |
| GCATTTCCCATAAAAGAAAG+GGG | 0.628506 | 1_2:+57851599 | None:intergenic |
| ATGTTTAGCCAAAATCTCAA+GGG | 0.653343 | 1_2:+57852770 | None:intergenic |
| TAAGAGAACTTACCATAGGG+CGG | 0.658724 | 1_2:+57857244 | None:intergenic |
| CATTTCCCATAAAAGAAAGG+GGG | 0.662697 | 1_2:+57851600 | None:intergenic |
| AACCAAGTTAAAGATTGCTG+TGG | 0.665273 | 1_2:+57851732 | None:intergenic |
| CAGAGTTCGTATCAAAACAA+CGG | 0.673005 | 1_2:+57853425 | None:intergenic |
| GAAAAGCGACTTAATGATGG+AGG | 0.681182 | 1_2:-57855284 | Msa0079820:intron |
| AGAAGATGGGATGAATATTG+TGG | 0.692349 | 1_2:+57857524 | None:intergenic |
| GGCTATCAGTATGTACAAGG+AGG | 0.702267 | 1_2:-57854885 | Msa0079820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTAATTTAATTT+GGG | - | chr1_2:57854696-57854715 | Msa0079820:intron | 0.0% |
| !!! | TAATTTTTTTTTTAAAATAA+GGG | + | chr1_2:57854742-57854761 | None:intergenic | 0.0% |
| !!! | ATAATTTTTTTTTTAAAATA+AGG | + | chr1_2:57854743-57854762 | None:intergenic | 0.0% |
| !!! | TTTTTTTGACAATATATTAA+AGG | - | chr1_2:57852324-57852343 | Msa0079820:intron | 10.0% |
| !!! | TATATTTTATCTATGATTTT+GGG | + | chr1_2:57852411-57852430 | None:intergenic | 10.0% |
| !!! | ATATATTTTATCTATGATTT+TGG | + | chr1_2:57852412-57852431 | None:intergenic | 10.0% |
| !!! | ATTATTTTAATCATTGATTA+AGG | - | chr1_2:57852753-57852772 | Msa0079820:intron | 10.0% |
| !! | TCTATTAAAGAATATTATAA+TGG | + | chr1_2:57853278-57853297 | None:intergenic | 10.0% |
| !!! | AGTATTTTTTATTTCTTTTT+AGG | + | chr1_2:57853564-57853583 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAAGTAAAATAC+GGG | + | chr1_2:57854805-57854824 | None:intergenic | 10.0% |
| !!! | AATTTACTTAATAAATTTTG+TGG | - | chr1_2:57855269-57855288 | Msa0079820:intron | 10.0% |
| !!! | TTTTCTATATTATTGTTTTA+TGG | - | chr1_2:57856293-57856312 | Msa0079820:intron | 10.0% |
| !!! | AATTTATATTTAATTTCTTG+TGG | - | chr1_2:57857059-57857078 | Msa0079820:intron | 10.0% |
| !!! | ATTGAAAATATAAGTTTTTA+AGG | - | chr1_2:57857638-57857657 | Msa0079820:five_prime_UTR | 10.0% |
| !!! | ATTATGATTTTTTTTGCTTT+TGG | - | chr1_2:57851761-57851780 | Msa0079820:three_prime_UTR | 15.0% |
| !!! | TTATGATTTTTTTTGCTTTT+GGG | - | chr1_2:57851762-57851781 | Msa0079820:three_prime_UTR | 15.0% |
| !!! | GTTTTCATAAATTATCTTAA+AGG | + | chr1_2:57852022-57852041 | None:intergenic | 15.0% |
| !! | AAATATACCAACAAAATAAT+TGG | + | chr1_2:57852857-57852876 | None:intergenic | 15.0% |
| !! | AAAACAAATAAAATCAATCT+AGG | - | chr1_2:57853311-57853330 | Msa0079820:intron | 15.0% |
| !! | AATCATGTATAACAATATAT+GGG | + | chr1_2:57853587-57853606 | None:intergenic | 15.0% |
| !! | TATTAATTAGAAAATTAACG+AGG | - | chr1_2:57854487-57854506 | Msa0079820:intron | 15.0% |
| !!! | AAAAACCGATTTTTAAAATA+GGG | + | chr1_2:57854776-57854795 | None:intergenic | 15.0% |
| !!! | AAAAAACCGATTTTTAAAAT+AGG | + | chr1_2:57854777-57854796 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAATCGGTTTTTT+TGG | - | chr1_2:57854777-57854796 | Msa0079820:intron | 15.0% |
| !! | TAAAAAAAAAGTAAAATACG+GGG | + | chr1_2:57854804-57854823 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTTTCAGAATTT+TGG | + | chr1_2:57855010-57855029 | None:intergenic | 15.0% |
| !!! | ATTCTGAAAAAAAGTAAAAT+AGG | - | chr1_2:57855012-57855031 | Msa0079820:intron | 15.0% |
| !!! | TTCTGAAAAAAAGTAAAATA+GGG | - | chr1_2:57855013-57855032 | Msa0079820:intron | 15.0% |
| !!! | TATTTTCAAATTATGTAATG+TGG | + | chr1_2:57856263-57856282 | None:intergenic | 15.0% |
| !! | GTTGAGAAAATAATTTATAT+TGG | + | chr1_2:57857174-57857193 | None:intergenic | 15.0% |
| !! | TTAGGAATAAAATCAAATAT+AGG | - | chr1_2:57857479-57857498 | Msa0079820:CDS | 15.0% |
| !! | TTTCATTCAAAAACAAAATT+TGG | + | chr1_2:57857516-57857535 | None:intergenic | 15.0% |
| !!! | TATGATTTTTTTTGCTTTTG+GGG | - | chr1_2:57851763-57851782 | Msa0079820:three_prime_UTR | 20.0% |
| !!! | TTTATGAAAACAACTTTTGA+TGG | - | chr1_2:57852031-57852050 | Msa0079820:intron | 20.0% |
| !!! | TTATGAAAACAACTTTTGAT+GGG | - | chr1_2:57852032-57852051 | Msa0079820:intron | 20.0% |
| !! | CAATACAATAACTACAAATT+GGG | + | chr1_2:57852171-57852190 | None:intergenic | 20.0% |
| !! | TTGGATTAATGAAATTTACA+AGG | - | chr1_2:57852188-57852207 | Msa0079820:intron | 20.0% |
| !! | TGTAAATTGTGTTATATGAA+TGG | + | chr1_2:57852663-57852682 | None:intergenic | 20.0% |
| !! | ATGAATATAGAATACAAGAA+GGG | + | chr1_2:57852831-57852850 | None:intergenic | 20.0% |
| !! | TATGAATATAGAATACAAGA+AGG | + | chr1_2:57852832-57852851 | None:intergenic | 20.0% |
| !!! | TCATATACCAATTATTTTGT+TGG | - | chr1_2:57852847-57852866 | Msa0079820:intron | 20.0% |
| !!! | GTATATTTGAATTGATTTAC+TGG | - | chr1_2:57852869-57852888 | Msa0079820:intron | 20.0% |
| !!! | TTATTTTACTCTTCAATTAG+AGG | - | chr1_2:57852961-57852980 | Msa0079820:intron | 20.0% |
| !! | AAAACAATTGTTACATAAGA+GGG | + | chr1_2:57853254-57853273 | None:intergenic | 20.0% |
| !! | AAAAACAATTGTTACATAAG+AGG | + | chr1_2:57853255-57853274 | None:intergenic | 20.0% |
| !! | GAATCATGTATAACAATATA+TGG | + | chr1_2:57853588-57853607 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCATATCTTTTTG+TGG | - | chr1_2:57853622-57853641 | Msa0079820:intron | 20.0% |
| !!! | AAGTTTTCATATCTTTTTGT+GGG | - | chr1_2:57853623-57853642 | Msa0079820:intron | 20.0% |
| !! | ATTATTACATAGACATAGTT+AGG | + | chr1_2:57853950-57853969 | None:intergenic | 20.0% |
| !! | GTATGGAATACAAAATATAA+CGG | + | chr1_2:57854300-57854319 | None:intergenic | 20.0% |
| !! | ACATTATTGAAATCAAAACT+AGG | - | chr1_2:57854513-57854532 | Msa0079820:intron | 20.0% |
| !! | CATTATTGAAATCAAAACTA+GGG | - | chr1_2:57854514-57854533 | Msa0079820:intron | 20.0% |
| !!! | AAATAAATGGTCTATCTTTT+GGG | + | chr1_2:57854648-57854667 | None:intergenic | 20.0% |
| !!! | TAAATAAATGGTCTATCTTT+TGG | + | chr1_2:57854649-57854668 | None:intergenic | 20.0% |
| !!! | AAAACCGATTTTTAAAATAG+GGG | + | chr1_2:57854775-57854794 | None:intergenic | 20.0% |
| !! | TCTGAAAAAAAGTAAAATAG+GGG | - | chr1_2:57855014-57855033 | Msa0079820:intron | 20.0% |
| !!! | TTTTCATAAAAATGTTGGTT+TGG | + | chr1_2:57855042-57855061 | None:intergenic | 20.0% |
| !!! | ACCAACATTTTTATGAAAAT+AGG | - | chr1_2:57855043-57855062 | Msa0079820:intron | 20.0% |
| !!! | CCAACATTTTTATGAAAATA+GGG | - | chr1_2:57855044-57855063 | Msa0079820:intron | 20.0% |
| !!! | CAACATTTTTATGAAAATAG+GGG | - | chr1_2:57855045-57855064 | Msa0079820:intron | 20.0% |
| !!! | AACATTTTTATGAAAATAGG+GGG | - | chr1_2:57855046-57855065 | Msa0079820:intron | 20.0% |
| !!! | GCTGTTTTTTAATTCTTTAT+AGG | - | chr1_2:57855349-57855368 | Msa0079820:intron | 20.0% |
| !! | AAACAAAACTCTGATAATTA+TGG | + | chr1_2:57855631-57855650 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTTAATCTCATA+TGG | - | chr1_2:57855986-57856005 | Msa0079820:intron | 20.0% |
| !! | TGATCCTATATAATATGAAT+TGG | - | chr1_2:57856123-57856142 | Msa0079820:intron | 20.0% |
| !! | TTACTGAAAATTTATATCCT+TGG | - | chr1_2:57856434-57856453 | Msa0079820:intron | 20.0% |
| !! | ATATAATGCATTATGCTAAT+TGG | + | chr1_2:57856651-57856670 | None:intergenic | 20.0% |
| !! | AACTATTATGAAAGATTTAG+AGG | - | chr1_2:57856894-57856913 | Msa0079820:intron | 20.0% |
| !! | TCTATTTCATAGAATAATTG+TGG | + | chr1_2:57857037-57857056 | None:intergenic | 20.0% |
| !! | GAGAAAATAATTTATATTGG+TGG | + | chr1_2:57857171-57857190 | None:intergenic | 20.0% |
| !!! | TATACAACTACCATAAATTT+TGG | + | chr1_2:57857361-57857380 | None:intergenic | 20.0% |
| !! | TTCAAAAACAAAATTTGGAT+AGG | + | chr1_2:57857511-57857530 | None:intergenic | 20.0% |
| ! | CTTTCTATCATTCATGAAAA+TGG | + | chr1_2:57851847-57851866 | None:intergenic | 25.0% |
| ! | ATTTAAGAGAACTTACCATA+GGG | + | chr1_2:57851914-57851933 | None:intergenic | 25.0% |
| ! | AATTTAAGAGAACTTACCAT+AGG | + | chr1_2:57851915-57851934 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+CGG | - | chr1_2:57852121-57852140 | Msa0079820:intron | 25.0% |
| ! | CCAATACAATAACTACAAAT+TGG | + | chr1_2:57852172-57852191 | None:intergenic | 25.0% |
| ! | CCAATTTGTAGTTATTGTAT+TGG | - | chr1_2:57852169-57852188 | Msa0079820:intron | 25.0% |
| !! | GTTTAAGTTCTTACTAGTTA+TGG | - | chr1_2:57852276-57852295 | Msa0079820:intron | 25.0% |
| ! | TTCTTACTAGTTATGGTTTA+AGG | - | chr1_2:57852283-57852302 | Msa0079820:intron | 25.0% |
| ! | ATGGTTTAAGGAGATATTAA+AGG | - | chr1_2:57852295-57852314 | Msa0079820:intron | 25.0% |
| ! | AATTTATGACTACCAATTGT+TGG | - | chr1_2:57852369-57852388 | Msa0079820:intron | 25.0% |
| ! | AGTCAGAATATAAATTCGAA+TGG | - | chr1_2:57852587-57852606 | Msa0079820:intron | 25.0% |
| !!! | TAATGATTTAGATGGACTTT+TGG | - | chr1_2:57853225-57853244 | Msa0079820:intron | 25.0% |
| ! | AAGGCATGAAAATTAATACT+TGG | + | chr1_2:57853366-57853385 | None:intergenic | 25.0% |
| ! | GAAATAATGATATGTCAGTA+AGG | + | chr1_2:57853385-57853404 | None:intergenic | 25.0% |
| ! | TACTGACATATCATTATTTC+AGG | - | chr1_2:57853385-57853404 | Msa0079820:intron | 25.0% |
| ! | ACTGACATATCATTATTTCA+GGG | - | chr1_2:57853386-57853405 | Msa0079820:intron | 25.0% |
| ! | TCTATGATGTTTCATATATC+AGG | - | chr1_2:57853816-57853835 | Msa0079820:intron | 25.0% |
| ! | CATAGTTAGGTTTCAAAATT+GGG | + | chr1_2:57853937-57853956 | None:intergenic | 25.0% |
| ! | ACATAGTTAGGTTTCAAAAT+TGG | + | chr1_2:57853938-57853957 | None:intergenic | 25.0% |
| ! | AATAACATCCATAGAAGAAA+GGG | + | chr1_2:57854140-57854159 | None:intergenic | 25.0% |
| ! | CAAAAAGCAAAATTTGATTC+AGG | + | chr1_2:57854168-57854187 | None:intergenic | 25.0% |
| ! | TCAAAAAATAAAGCTTGGTA+TGG | + | chr1_2:57854317-57854336 | None:intergenic | 25.0% |
| ! | ATGAGTCAAAAAATAAAGCT+TGG | + | chr1_2:57854322-57854341 | None:intergenic | 25.0% |
| ! | TAATAGCGTAAATTAGTAAC+AGG | + | chr1_2:57854472-57854491 | None:intergenic | 25.0% |
| !!! | GTTTTAAACAAGGTTGATTT+TGG | + | chr1_2:57854542-57854561 | None:intergenic | 25.0% |
| ! | CAAATCTAGAGGTAAATAAA+TGG | + | chr1_2:57854661-57854680 | None:intergenic | 25.0% |
| !!! | AAACCGATTTTTAAAATAGG+GGG | + | chr1_2:57854774-57854793 | None:intergenic | 25.0% |
| !! | TAGACATATTTTTCCTAACA+TGG | + | chr1_2:57854918-57854937 | None:intergenic | 25.0% |
| ! | GGAAAAATATGTCTAATAAG+CGG | - | chr1_2:57854923-57854942 | Msa0079820:CDS | 25.0% |
| ! | CTGAAAAAAAGTAAAATAGG+GGG | - | chr1_2:57855015-57855034 | Msa0079820:intron | 25.0% |
| !! | CCCTATTTTCATAAAAATGT+TGG | + | chr1_2:57855047-57855066 | None:intergenic | 25.0% |
| !! | ACATTTTTATGAAAATAGGG+GGG | - | chr1_2:57855047-57855066 | Msa0079820:intron | 25.0% |
| ! | ATAATATGTTCAAATGGCTA+AGG | + | chr1_2:57855196-57855215 | None:intergenic | 25.0% |
| !!! | TTTGCTTCATTTTGTTTCTT+TGG | - | chr1_2:57855319-57855338 | Msa0079820:intron | 25.0% |
| !!! | TTCATGTATTTTTAACCACT+AGG | - | chr1_2:57855372-57855391 | Msa0079820:intron | 25.0% |
| !! | AAGGAAAGGAAATTTTATCA+TGG | + | chr1_2:57855454-57855473 | None:intergenic | 25.0% |
| ! | TTAAAGTAAGAGAAACTACA+TGG | - | chr1_2:57855676-57855695 | Msa0079820:intron | 25.0% |
| ! | TCGTATTTCATATACACATT+TGG | + | chr1_2:57855826-57855845 | None:intergenic | 25.0% |
| ! | TATATGAAATACGAGAAAGA+AGG | - | chr1_2:57855832-57855851 | Msa0079820:intron | 25.0% |
| ! | ATTAAATATGTATCCCAGAA+AGG | + | chr1_2:57856054-57856073 | None:intergenic | 25.0% |
| ! | ATTATATAGGATCATCATCA+TGG | + | chr1_2:57856117-57856136 | None:intergenic | 25.0% |
| ! | CTAGCCAATTCATATTATAT+AGG | + | chr1_2:57856130-57856149 | None:intergenic | 25.0% |
| ! | TATGCTTTACACGTTAAAAT+TGG | - | chr1_2:57856406-57856425 | Msa0079820:intron | 25.0% |
| ! | TAGAAAAGATGGTAGAAAAT+AGG | - | chr1_2:57856770-57856789 | Msa0079820:intron | 25.0% |
| ! | TCTTTCATAATAGTTTCTCT+AGG | + | chr1_2:57856889-57856908 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGATTCAAATA+TGG | - | chr1_2:57856918-57856937 | Msa0079820:intron | 25.0% |
| !! | TTATATTGGTGGTAAAGAAA+TGG | + | chr1_2:57857160-57857179 | None:intergenic | 25.0% |
| ! | TCTCAAATATCCATATATCA+CGG | + | chr1_2:57857253-57857272 | None:intergenic | 25.0% |
| ! | TGATATATGGATATTTGAGA+AGG | - | chr1_2:57857253-57857272 | Msa0079820:intron | 25.0% |
| ! | AAAGAAGAGACCAAAATTTA+TGG | - | chr1_2:57857348-57857367 | Msa0079820:intron | 25.0% |
| TTCAATCAAAGAACAATTGC+AGG | + | chr1_2:57851504-57851523 | None:intergenic | 30.0% | |
| !! | AGAAGCGTTTGATAAAACAT+TGG | + | chr1_2:57851674-57851693 | None:intergenic | 30.0% |
| TTTGACATTTCGATCTACAA+TGG | - | chr1_2:57851714-57851733 | Msa0079820:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTGCTTTTGGGGTTT+TGG | - | chr1_2:57851769-57851788 | Msa0079820:three_prime_UTR | 30.0% |
| !!! | TTTTTTGCTTTTGGGGTTTT+GGG | - | chr1_2:57851770-57851789 | Msa0079820:three_prime_UTR | 30.0% |
| TTGTTGTCAATGTCTTTCTT+AGG | - | chr1_2:57851809-57851828 | Msa0079820:three_prime_UTR | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr1_2:57851991-57852010 | Msa0079820:intron | 30.0% | |
| ! | TCTGCTAATTTTCCAACAAT+TGG | + | chr1_2:57852384-57852403 | None:intergenic | 30.0% |
| ATTGATTAAGGTTATCCAAG+TGG | - | chr1_2:57852765-57852784 | Msa0079820:intron | 30.0% | |
| ! | ATTGCGAATTTTGAACAGAA+AGG | + | chr1_2:57852913-57852932 | None:intergenic | 30.0% |
| AAAATTCGCAATTGAAGTGA+AGG | - | chr1_2:57852921-57852940 | Msa0079820:intron | 30.0% | |
| AAATTCGCAATTGAAGTGAA+GGG | - | chr1_2:57852922-57852941 | Msa0079820:intron | 30.0% | |
| ACAGTTCATAGCTACAATTA+AGG | - | chr1_2:57853004-57853023 | Msa0079820:intron | 30.0% | |
| TCCAGAGTTAATGATTTAGA+TGG | - | chr1_2:57853217-57853236 | Msa0079820:intron | 30.0% | |
| TCCATCTAAATCATTAACTC+TGG | + | chr1_2:57853221-57853240 | None:intergenic | 30.0% | |
| !! | TCTGCAAATAAACGGATTAT+AGG | + | chr1_2:57853343-57853362 | None:intergenic | 30.0% |
| ATACTTGGTCTGCAAATAAA+CGG | + | chr1_2:57853351-57853370 | None:intergenic | 30.0% | |
| TAAGGTTCATAGATAATTCC+TGG | + | chr1_2:57853434-57853453 | None:intergenic | 30.0% | |
| !! | AGAAAATCCCATTTTGGAAA+AGG | - | chr1_2:57853465-57853484 | Msa0079820:CDS | 30.0% |
| ! | AACCTAACCTTTTCCAAAAT+GGG | + | chr1_2:57853475-57853494 | None:intergenic | 30.0% |
| AACTTTATAAGTATGCATCC+TGG | - | chr1_2:57853779-57853798 | Msa0079820:intron | 30.0% | |
| TAGAAATTATAGAGAAGACC+AGG | + | chr1_2:57853800-57853819 | None:intergenic | 30.0% | |
| GAATAACATCCATAGAAGAA+AGG | + | chr1_2:57854141-57854160 | None:intergenic | 30.0% | |
| ! | TGTTTTTCTTAACCTTGCAA+TGG | + | chr1_2:57854218-57854237 | None:intergenic | 30.0% |
| ATTGCAAGGTTAAGAAAAAC+AGG | - | chr1_2:57854217-57854236 | Msa0079820:intron | 30.0% | |
| AAAGAAACAGTTCTATCTAG+AGG | - | chr1_2:57854246-57854265 | Msa0079820:intron | 30.0% | |
| !! | CTTTAGTTGTTGTTTGTTGT+TGG | + | chr1_2:57854349-57854368 | None:intergenic | 30.0% |
| !!! | TATCCTTCTGGTTTTAAACA+AGG | + | chr1_2:57854552-57854571 | None:intergenic | 30.0% |
| !! | TTTGATTTGATGTATCCTTC+TGG | + | chr1_2:57854564-57854583 | None:intergenic | 30.0% |
| TTTATAAGTATGCACCCATT+AGG | - | chr1_2:57854585-57854604 | Msa0079820:intron | 30.0% | |
| GCTACAATCAATAAACTACA+TGG | - | chr1_2:57854616-57854635 | Msa0079820:intron | 30.0% | |
| TTGTCACGTCATAAATGAAT+AGG | + | chr1_2:57854872-57854891 | None:intergenic | 30.0% | |
| !!! | AAAGGCTTTAAATGCACTTT+TGG | + | chr1_2:57855073-57855092 | None:intergenic | 30.0% |
| ! | GTTTCAAAACTGCATCTTTT+AGG | + | chr1_2:57855122-57855141 | None:intergenic | 30.0% |
| AGGCTGATAATATGTTCAAA+TGG | + | chr1_2:57855202-57855221 | None:intergenic | 30.0% | |
| ATTTATGTATCTGCTTCATC+AGG | + | chr1_2:57855222-57855241 | None:intergenic | 30.0% | |
| AGCAAATCTCTGTAATCAAA+AGG | + | chr1_2:57855305-57855324 | None:intergenic | 30.0% | |
| ATCATGATAAATTGTCCTAG+TGG | + | chr1_2:57855390-57855409 | None:intergenic | 30.0% | |
| CTAGGACAATTTATCATGAT+TGG | - | chr1_2:57855390-57855409 | Msa0079820:intron | 30.0% | |
| CACTGGATAAAATCACAAAA+AGG | + | chr1_2:57855567-57855586 | None:intergenic | 30.0% | |
| TTCGCAAAAATAATACACAC+TGG | + | chr1_2:57855584-57855603 | None:intergenic | 30.0% | |
| ATGATACTACTCAATCCAAT+CGG | + | chr1_2:57855915-57855934 | None:intergenic | 30.0% | |
| TAGTATCATTACCTTTGCTA+GGG | - | chr1_2:57855926-57855945 | Msa0079820:intron | 30.0% | |
| ATGTTTAGCCAAAATCTCAA+GGG | + | chr1_2:57856385-57856404 | None:intergenic | 30.0% | |
| ATATGCTTCAAATTTCTGCA+AGG | + | chr1_2:57856513-57856532 | None:intergenic | 30.0% | |
| ! | TTTGAAGCATATGACTCAAA+AGG | - | chr1_2:57856521-57856540 | Msa0079820:intron | 30.0% |
| TCTTTGTCTCATATAGTAGA+CGG | - | chr1_2:57856697-57856716 | Msa0079820:intron | 30.0% | |
| TGGTTTATGATCGAACATTA+TGG | - | chr1_2:57856938-57856957 | Msa0079820:intron | 30.0% | |
| ! | AACTTGATAGTTGATACAGT+GGG | - | chr1_2:57857119-57857138 | Msa0079820:intron | 30.0% |
| GAAACCAGTACTTGAATAAA+GGG | + | chr1_2:57857209-57857228 | None:intergenic | 30.0% | |
| !! | AATCTTTAACTTGGTTCCTT+GGG | - | chr1_2:57857427-57857446 | Msa0079820:intron | 30.0% |
| !!! | TCTTAGAGGAGTTTTGTTTT+AGG | - | chr1_2:57857461-57857480 | Msa0079820:CDS | 30.0% |
| ! | AATTTCCCCCTTTCTTTTAT+GGG | - | chr1_2:57857547-57857566 | Msa0079820:CDS | 30.0% |
| AGCATTTCCCATAAAAGAAA+GGG | + | chr1_2:57857557-57857576 | None:intergenic | 30.0% | |
| TAGCATTTCCCATAAAAGAA+AGG | + | chr1_2:57857558-57857577 | None:intergenic | 30.0% | |
| AGAAGATGGGATGAATATTG+TGG | + | chr1_2:57851631-57851650 | None:intergenic | 35.0% | |
| ACAATATTCATCCCATCTTC+TGG | - | chr1_2:57851630-57851649 | Msa0079820:three_prime_UTR | 35.0% | |
| CAATATTCATCCCATCTTCT+GGG | - | chr1_2:57851631-57851650 | Msa0079820:three_prime_UTR | 35.0% | |
| GGATAAACAACTTATGTTGC+AGG | + | chr1_2:57852116-57852135 | None:intergenic | 35.0% | |
| AAAAATAGACGAGCAAAGCT+CGG | + | chr1_2:57852253-57852272 | None:intergenic | 35.0% | |
| !!! | GCTTTGCTCGTCTATTTTTT+AGG | - | chr1_2:57852254-57852273 | Msa0079820:intron | 35.0% |
| TATATTCTGACTATCCCATC+AGG | + | chr1_2:57852579-57852598 | None:intergenic | 35.0% | |
| ! | AATACAAGAAGGGCATAAGT+GGG | + | chr1_2:57852821-57852840 | None:intergenic | 35.0% |
| AAGTGAAGGGTTTCTTCAAA+AGG | - | chr1_2:57852935-57852954 | Msa0079820:intron | 35.0% | |
| ACCATCCATTGAAAAGACAA+AGG | + | chr1_2:57853122-57853141 | None:intergenic | 35.0% | |
| ! | CTTTTCAATGGATGGTAAAG+TGG | - | chr1_2:57853126-57853145 | Msa0079820:intron | 35.0% |
| !! | ATCCCATTTTGGAAAAGGTT+AGG | - | chr1_2:57853470-57853489 | Msa0079820:CDS | 35.0% |
| ! | CAACCTAACCTTTTCCAAAA+TGG | + | chr1_2:57853476-57853495 | None:intergenic | 35.0% |
| GAGATAAGAAGCTAAAGCAA+TGG | + | chr1_2:57853515-57853534 | None:intergenic | 35.0% | |
| AACGAAAAGCGACTTAATGA+TGG | - | chr1_2:57853865-57853884 | Msa0079820:intron | 35.0% | |
| AGATTGGGGGCAAATAAAAA+GGG | + | chr1_2:57854003-57854022 | None:intergenic | 35.0% | |
| AAGATTGGGGGCAAATAAAA+AGG | + | chr1_2:57854004-57854023 | None:intergenic | 35.0% | |
| !! | TTTTTATTTGCCCCCAATCT+TGG | - | chr1_2:57854003-57854022 | Msa0079820:intron | 35.0% |
| ! | AGTACTGAATACTGGACAAT+AGG | - | chr1_2:57854108-57854127 | Msa0079820:intron | 35.0% |
| AAAATGCCTATACCATTGCA+AGG | - | chr1_2:57854203-57854222 | Msa0079820:intron | 35.0% | |
| TCTTAACCTTGCAATGGTAT+AGG | + | chr1_2:57854212-57854231 | None:intergenic | 35.0% | |
| ! | CAACCTTGTTTAAAACCAGA+AGG | - | chr1_2:57854546-57854565 | Msa0079820:intron | 35.0% |
| ! | ACCTCTAGATTTGAAACTAG+AGG | - | chr1_2:57854668-57854687 | Msa0079820:intron | 35.0% |
| ! | TCCTCTAGTTTCAAATCTAG+AGG | + | chr1_2:57854672-57854691 | None:intergenic | 35.0% |
| !! | GGTCCCCCTATTTTAAAAAT+CGG | - | chr1_2:57854768-57854787 | Msa0079820:intron | 35.0% |
| ATGACGTGACAATGCTTATT+AGG | - | chr1_2:57854880-57854899 | Msa0079820:intron | 35.0% | |
| TCCTAACATGGATATTAGTG+TGG | + | chr1_2:57854906-57854925 | None:intergenic | 35.0% | |
| AGTGATCCAAAAATGAGACA+AGG | - | chr1_2:57854982-57855001 | Msa0079820:intron | 35.0% | |
| GTGATCCAAAAATGAGACAA+GGG | - | chr1_2:57854983-57855002 | Msa0079820:intron | 35.0% | |
| GAAACATTCAAACTCCTTTG+TGG | - | chr1_2:57855137-57855156 | Msa0079820:intron | 35.0% | |
| TAGCAATAAACAGACCACAA+AGG | + | chr1_2:57855154-57855173 | None:intergenic | 35.0% | |
| ATCTCTGTAATCAAAAGGTG+TGG | + | chr1_2:57855300-57855319 | None:intergenic | 35.0% | |
| ! | TTATCATGATTGGTTCTTGC+TGG | - | chr1_2:57855400-57855419 | Msa0079820:intron | 35.0% |
| GTTTATCTGCAGAAAAGGAA+AGG | + | chr1_2:57855468-57855487 | None:intergenic | 35.0% | |
| AGTGTGTTTATCTGCAGAAA+AGG | + | chr1_2:57855473-57855492 | None:intergenic | 35.0% | |
| ATGGTGACAAACACTCATTA+AGG | - | chr1_2:57855501-57855520 | Msa0079820:intron | 35.0% | |
| TACATGGAGCAAGGTTTATT+GGG | - | chr1_2:57855692-57855711 | Msa0079820:CDS | 35.0% | |
| AGAGTTCGTATCAAAACAAC+GGG | + | chr1_2:57855729-57855748 | None:intergenic | 35.0% | |
| CAGAGTTCGTATCAAAACAA+CGG | + | chr1_2:57855730-57855749 | None:intergenic | 35.0% | |
| GTAGTATCATTACCTTTGCT+AGG | - | chr1_2:57855925-57855944 | Msa0079820:intron | 35.0% | |
| ATGAATTGGCTAGATCTTGT+TGG | - | chr1_2:57856137-57856156 | Msa0079820:intron | 35.0% | |
| ATTTCTTTGTCTTTGCAGCT+TGG | - | chr1_2:57856318-57856337 | Msa0079820:intron | 35.0% | |
| ! | TCAGATTACCCTTGAGATTT+TGG | - | chr1_2:57856374-57856393 | Msa0079820:intron | 35.0% |
| CATGTTTAGCCAAAATCTCA+AGG | + | chr1_2:57856386-57856405 | None:intergenic | 35.0% | |
| CTTTGTCTCATATAGTAGAC+GGG | - | chr1_2:57856698-57856717 | Msa0079820:intron | 35.0% | |
| ATAGTAGACGGGATAGAATT+AGG | - | chr1_2:57856709-57856728 | Msa0079820:intron | 35.0% | |
| AGTAACTGCAGTAGAAAAGA+TGG | - | chr1_2:57856759-57856778 | Msa0079820:intron | 35.0% | |
| AGATGGTAGAAAATAGGCTT+AGG | - | chr1_2:57856776-57856795 | Msa0079820:intron | 35.0% | |
| CTACTCTTCATACTACATAC+TGG | + | chr1_2:57856825-57856844 | None:intergenic | 35.0% | |
| AGTATGAAGAGTAGATCAGA+TGG | - | chr1_2:57856831-57856850 | Msa0079820:intron | 35.0% | |
| AGATTTAGAGGCTAATGAGT+TGG | - | chr1_2:57856906-57856925 | Msa0079820:intron | 35.0% | |
| TTCTTGTGGCATGAATTATG+TGG | - | chr1_2:57857073-57857092 | Msa0079820:intron | 35.0% | |
| TCTTGTGGCATGAATTATGT+GGG | - | chr1_2:57857074-57857093 | Msa0079820:intron | 35.0% | |
| ! | GAACTTGATAGTTGATACAG+TGG | - | chr1_2:57857118-57857137 | Msa0079820:intron | 35.0% |
| GGAAACCAGTACTTGAATAA+AGG | + | chr1_2:57857210-57857229 | None:intergenic | 35.0% | |
| !! | ACTGGTTTCCTATATTTTCC+AGG | - | chr1_2:57857220-57857239 | Msa0079820:intron | 35.0% |
| GACAAGAACCTGGAAAATAT+AGG | + | chr1_2:57857231-57857250 | None:intergenic | 35.0% | |
| ! | TGAGATAACTACGATGCTTT+TGG | + | chr1_2:57857326-57857345 | None:intergenic | 35.0% |
| AACCAAGTTAAAGATTGCTG+TGG | + | chr1_2:57857423-57857442 | None:intergenic | 35.0% | |
| !! | CAATCTTTAACTTGGTTCCT+TGG | - | chr1_2:57857426-57857445 | Msa0079820:intron | 35.0% |
| ! | GAATTTCCCCCTTTCTTTTA+TGG | - | chr1_2:57857546-57857565 | Msa0079820:CDS | 35.0% |
| CATTTCCCATAAAAGAAAGG+GGG | + | chr1_2:57857555-57857574 | None:intergenic | 35.0% | |
| GCATTTCCCATAAAAGAAAG+GGG | + | chr1_2:57857556-57857575 | None:intergenic | 35.0% | |
| ATCATTATCTTGTGCCCTAA+GGG | + | chr1_2:57857588-57857607 | None:intergenic | 35.0% | |
| TCAATGTCTTTCTTAGGCTG+CGG | - | chr1_2:57851815-57851834 | Msa0079820:three_prime_UTR | 40.0% | |
| TAAGAGAACTTACCATAGGG+CGG | + | chr1_2:57851911-57851930 | None:intergenic | 40.0% | |
| AATCATCAAGCTGTGCTGTA+TGG | - | chr1_2:57851955-57851974 | Msa0079820:intron | 40.0% | |
| TGTTTATCCAAACACGGACA+TGG | - | chr1_2:57852127-57852146 | Msa0079820:intron | 40.0% | |
| TAATCTACCATGTCCGTGTT+TGG | + | chr1_2:57852137-57852156 | None:intergenic | 40.0% | |
| !! | CAAGGATGACTTTTGTTGTG+TGG | - | chr1_2:57852206-57852225 | Msa0079820:intron | 40.0% |
| CGAACACTAACAAACATGAC+AGG | + | chr1_2:57852478-57852497 | None:intergenic | 40.0% | |
| ! | TGGAGAAGAAAGAGCATGAA+AGG | - | chr1_2:57852507-57852526 | Msa0079820:intron | 40.0% |
| TAGAGTTTCTCTGACCTGAT+GGG | - | chr1_2:57852562-57852581 | Msa0079820:intron | 40.0% | |
| ! | GATGTGTTGGGTTGTTCAAT+TGG | + | chr1_2:57852635-57852654 | None:intergenic | 40.0% |
| AATCGAGCAATTCTTCCACT+TGG | + | chr1_2:57852783-57852802 | None:intergenic | 40.0% | |
| ! | GAATACAAGAAGGGCATAAG+TGG | + | chr1_2:57852822-57852841 | None:intergenic | 40.0% |
| CTCTTCAATTAGAGGAAGAG+TGG | - | chr1_2:57852969-57852988 | Msa0079820:intron | 40.0% | |
| AGCTATGAACTGTGTGTCTT+GGG | + | chr1_2:57852997-57853016 | None:intergenic | 40.0% | |
| TAGCTATGAACTGTGTGTCT+TGG | + | chr1_2:57852998-57853017 | None:intergenic | 40.0% | |
| ! | AGCAGCCTTTGTCTTTTCAA+TGG | - | chr1_2:57853114-57853133 | Msa0079820:intron | 40.0% |
| ! | GCCTTTGTCTTTTCAATGGA+TGG | - | chr1_2:57853118-57853137 | Msa0079820:intron | 40.0% |
| AGATAATTCCTGGACTTGAC+AGG | + | chr1_2:57853424-57853443 | None:intergenic | 40.0% | |
| ! | ATTTTCTCACGAGGTTCGTA+AGG | + | chr1_2:57853452-57853471 | None:intergenic | 40.0% |
| ! | CAAAATGGGATTTTCTCACG+AGG | + | chr1_2:57853461-57853480 | None:intergenic | 40.0% |
| ! | CTCGTGAGAAAATCCCATTT+TGG | - | chr1_2:57853459-57853478 | Msa0079820:CDS | 40.0% |
| ! | TGGAAAAGGTTAGGTTGCAA+TGG | - | chr1_2:57853479-57853498 | Msa0079820:CDS | 40.0% |
| !! | ACCGATTTGATGTGTCTTCA+AGG | - | chr1_2:57853726-57853745 | Msa0079820:intron | 40.0% |
| GCCTTGAAGACACATCAAAT+CGG | + | chr1_2:57853730-57853749 | None:intergenic | 40.0% | |
| ATCAGGATGTTCACTAGAAG+TGG | - | chr1_2:57853833-57853852 | Msa0079820:intron | 40.0% | |
| GATGTTCACTAGAAGTGGTT+GGG | - | chr1_2:57853838-57853857 | Msa0079820:intron | 40.0% | |
| GAAAAGCGACTTAATGATGG+AGG | - | chr1_2:57853868-57853887 | Msa0079820:intron | 40.0% | |
| GGGAGTGGGAGATAAAATAT+TGG | + | chr1_2:57853983-57854002 | None:intergenic | 40.0% | |
| TGCTGCAATTCTCCAAGATT+GGG | + | chr1_2:57854018-57854037 | None:intergenic | 40.0% | |
| ATGCTGCAATTCTCCAAGAT+TGG | + | chr1_2:57854019-57854038 | None:intergenic | 40.0% | |
| !! | GTGCAGAAAGTACTGAATAC+TGG | - | chr1_2:57854100-57854119 | Msa0079820:intron | 40.0% |
| !!! | TTTGCTTTTTGCTCTGCTAC+AGG | - | chr1_2:57854177-57854196 | Msa0079820:intron | 40.0% |
| AGAGGCTATCAGTATGTACA+AGG | - | chr1_2:57854264-57854283 | Msa0079820:intron | 40.0% | |
| ! | AAGCCTCTTTTCACTAGATG+AGG | - | chr1_2:57854366-57854385 | Msa0079820:intron | 40.0% |
| ACACCTCATCTAGTGAAAAG+AGG | + | chr1_2:57854372-57854391 | None:intergenic | 40.0% | |
| TTTGGGCTCAAATGCACATT+TGG | - | chr1_2:57854713-57854732 | Msa0079820:intron | 40.0% | |
| ! | TTGGTCCTTCGTCTCATTTT+TGG | - | chr1_2:57854827-57854846 | Msa0079820:intron | 40.0% |
| !! | TGGTCCTTCGTCTCATTTTT+GGG | - | chr1_2:57854828-57854847 | Msa0079820:intron | 40.0% |
| ATGACCCAAAAATGAGACGA+AGG | + | chr1_2:57854835-57854854 | None:intergenic | 40.0% | |
| GCCACACTAATATCCATGTT+AGG | - | chr1_2:57854902-57854921 | Msa0079820:CDS | 40.0% | |
| ! | TTGGTCCCTTGTCTCATTTT+TGG | + | chr1_2:57854991-57855010 | None:intergenic | 40.0% |
| TATCATGGAGCCAACAAAAG+AGG | + | chr1_2:57855439-57855458 | None:intergenic | 40.0% | |
| ! | CTGAGAAGATGTTTTCCGTA+TGG | - | chr1_2:57855534-57855553 | Msa0079820:intron | 40.0% |
| AAGAGAAACTACATGGAGCA+AGG | - | chr1_2:57855683-57855702 | Msa0079820:intron | 40.0% | |
| CTACATGGAGCAAGGTTTAT+TGG | - | chr1_2:57855691-57855710 | Msa0079820:CDS | 40.0% | |
| GAGCAAGGTTTATTGGGAAA+TGG | - | chr1_2:57855698-57855717 | Msa0079820:CDS | 40.0% | |
| ACCTCCAAAAATAGACCCTA+TGG | + | chr1_2:57855952-57855971 | None:intergenic | 40.0% | |
| CATATGTGTATCTGCTCTTC+TGG | + | chr1_2:57856194-57856213 | None:intergenic | 40.0% | |
| TACTGGGACTTCAACAACTT+AGG | - | chr1_2:57856466-57856485 | Msa0079820:intron | 40.0% | |
| TGTCGCTGGAGATAAAAACA+AGG | - | chr1_2:57856550-57856569 | Msa0079820:intron | 40.0% | |
| ATGACACCATTAGAGAGAGT+TGG | - | chr1_2:57856733-57856752 | Msa0079820:intron | 40.0% | |
| TGACACCATTAGAGAGAGTT+GGG | - | chr1_2:57856734-57856753 | Msa0079820:intron | 40.0% | |
| TGGTAGAAAATAGGCTTAGG+TGG | - | chr1_2:57856779-57856798 | Msa0079820:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr1_2:57856784-57856803 | Msa0079820:intron | 40.0% | |
| ATGAAGAGTAGATCAGATGG+AGG | - | chr1_2:57856834-57856853 | Msa0079820:intron | 40.0% | |
| ! | CATGAATTATGTGGGAGCAT+GGG | - | chr1_2:57857082-57857101 | Msa0079820:intron | 40.0% |
| ! | ATGAATTATGTGGGAGCATG+GGG | - | chr1_2:57857083-57857102 | Msa0079820:intron | 40.0% |
| CTATCAAGTTCCCTTTGCTA+TGG | + | chr1_2:57857109-57857128 | None:intergenic | 40.0% | |
| CCAGTACTTGAATAAAGGGT+AGG | + | chr1_2:57857205-57857224 | None:intergenic | 40.0% | |
| CCTACCCTTTATTCAAGTAC+TGG | - | chr1_2:57857202-57857221 | Msa0079820:intron | 40.0% | |
| ATATATCACGGACAAGAACC+TGG | + | chr1_2:57857241-57857260 | None:intergenic | 40.0% | |
| AGGTTCTTGTCCGTGATATA+TGG | - | chr1_2:57857240-57857259 | Msa0079820:intron | 40.0% | |
| AAAGACGCCAGTATGATCTA+GGG | + | chr1_2:57857289-57857308 | None:intergenic | 40.0% | |
| TGCCACAGCAATCTTTAACT+TGG | - | chr1_2:57857418-57857437 | Msa0079820:intron | 40.0% | |
| TAAGATGAACTTGTCTCCCA+AGG | + | chr1_2:57857446-57857465 | None:intergenic | 40.0% | |
| ! | AAATGCTAACTTGTGCCCTT+AGG | - | chr1_2:57857570-57857589 | Msa0079820:CDS | 40.0% |
| ! | AATGCTAACTTGTGCCCTTA+GGG | - | chr1_2:57857571-57857590 | Msa0079820:CDS | 40.0% |
| GATCATTATCTTGTGCCCTA+AGG | + | chr1_2:57857589-57857608 | None:intergenic | 40.0% | |
| GCTGTGCTGTATGGTCTAAT+TGG | - | chr1_2:57851964-57851983 | Msa0079820:intron | 45.0% | |
| !! | GGATGACTTTTGTTGTGTGG+AGG | - | chr1_2:57852209-57852228 | Msa0079820:intron | 45.0% |
| !! | GACTTTTGTTGTGTGGAGGA+TGG | - | chr1_2:57852213-57852232 | Msa0079820:intron | 45.0% |
| GTTAGTGTTCGTAGTCGTCT+TGG | - | chr1_2:57852487-57852506 | Msa0079820:intron | 45.0% | |
| ! | CACCACCTTTTCCAGATAGA+GGG | + | chr1_2:57852540-57852559 | None:intergenic | 45.0% |
| CTAGAGTTTCTCTGACCTGA+TGG | - | chr1_2:57852561-57852580 | Msa0079820:intron | 45.0% | |
| AATGGTAGAGACCTCTCAAC+AGG | - | chr1_2:57852605-57852624 | Msa0079820:CDS | 45.0% | |
| !! | CAATTGGTTAGCCTGTTGAG+AGG | + | chr1_2:57852619-57852638 | None:intergenic | 45.0% |
| TGAATGGCTCGTGATGTGTT+GGG | + | chr1_2:57852647-57852666 | None:intergenic | 45.0% | |
| ATGAATGGCTCGTGATGTGT+TGG | + | chr1_2:57852648-57852667 | None:intergenic | 45.0% | |
| AAAGACAAAGGCTGCTCATG+TGG | + | chr1_2:57853110-57853129 | None:intergenic | 45.0% | |
| GGATGTTCACTAGAAGTGGT+TGG | - | chr1_2:57853837-57853856 | Msa0079820:intron | 45.0% | |
| GGGGCAAATAAAAAGGGAGT+GGG | + | chr1_2:57853997-57854016 | None:intergenic | 45.0% | |
| CTGCAATTCTCCAAGATTGG+GGG | + | chr1_2:57854016-57854035 | None:intergenic | 45.0% | |
| GCTGCAATTCTCCAAGATTG+GGG | + | chr1_2:57854017-57854036 | None:intergenic | 45.0% | |
| GAATACTGGACAATAGGCAG+TGG | - | chr1_2:57854114-57854133 | Msa0079820:intron | 45.0% | |
| GGCTATCAGTATGTACAAGG+AGG | - | chr1_2:57854267-57854286 | Msa0079820:intron | 45.0% | |
| AAGTATGCACCCATTAGGTG+AGG | - | chr1_2:57854590-57854609 | Msa0079820:intron | 45.0% | |
| TGTAGCTGACCTCACCTAAT+GGG | + | chr1_2:57854602-57854621 | None:intergenic | 45.0% | |
| TTGTAGCTGACCTCACCTAA+TGG | + | chr1_2:57854603-57854622 | None:intergenic | 45.0% | |
| CCAACAAAAGAGGCAAACGA+AGG | + | chr1_2:57855429-57855448 | None:intergenic | 45.0% | |
| ! | CCTTCGTTTGCCTCTTTTGT+TGG | - | chr1_2:57855426-57855445 | Msa0079820:intron | 45.0% |
| CAAAAAGGAAGCGAGCCATA+CGG | + | chr1_2:57855552-57855571 | None:intergenic | 45.0% | |
| TGAGACAATGCAGCATAAGC+AGG | + | chr1_2:57855858-57855877 | None:intergenic | 45.0% | |
| !!! | CAGGTTTTGATGGTGTCTCA+CGG | + | chr1_2:57855890-57855909 | None:intergenic | 45.0% |
| ATTACCTTTGCTAGGGCCAT+AGG | - | chr1_2:57855933-57855952 | Msa0079820:intron | 45.0% | |
| TTACCTTTGCTAGGGCCATA+GGG | - | chr1_2:57855934-57855953 | Msa0079820:intron | 45.0% | |
| ! | AGGGCCATAGGGTCTATTTT+TGG | - | chr1_2:57855945-57855964 | Msa0079820:intron | 45.0% |
| !!! | GCCATAGGGTCTATTTTTGG+AGG | - | chr1_2:57855948-57855967 | Msa0079820:intron | 45.0% |
| ATAGGCCTAACAGGTTACAC+AGG | + | chr1_2:57856171-57856190 | None:intergenic | 45.0% | |
| GTGTATCTGCTCTTCTGGAT+AGG | + | chr1_2:57856189-57856208 | None:intergenic | 45.0% | |
| !! | ATCCTTGGTGTCATGAGTAC+TGG | - | chr1_2:57856449-57856468 | Msa0079820:intron | 45.0% |
| !! | TCCTTGGTGTCATGAGTACT+GGG | - | chr1_2:57856450-57856469 | Msa0079820:intron | 45.0% |
| TCAAAAGGTTCTGTTGTCGC+TGG | - | chr1_2:57856536-57856555 | Msa0079820:intron | 45.0% | |
| CGCTGGAGATAAAAACAAGG+AGG | - | chr1_2:57856553-57856572 | Msa0079820:intron | 45.0% | |
| GACACACACTACAAGGATGT+AGG | + | chr1_2:57856591-57856610 | None:intergenic | 45.0% | |
| ATCCTTGTAGTGTGTGTCTC+TGG | - | chr1_2:57856593-57856612 | Msa0079820:intron | 45.0% | |
| ATCCAGAGACACACACTACA+AGG | + | chr1_2:57856598-57856617 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGTTG+GGG | - | chr1_2:57856735-57856754 | Msa0079820:intron | 45.0% | |
| ACTACCCCAACTCTCTCTAA+TGG | + | chr1_2:57856742-57856761 | None:intergenic | 45.0% | |
| ! | ACTAAGTGGGTTCGACTACA+TGG | + | chr1_2:57856976-57856995 | None:intergenic | 45.0% |
| ATGTAGTCGAACCCACTTAG+TGG | - | chr1_2:57856975-57856994 | Msa0079820:intron | 45.0% | |
| TGTAGTCGAACCCACTTAGT+GGG | - | chr1_2:57856976-57856995 | Msa0079820:intron | 45.0% | |
| ! | GAAGCCTTATCCCACTAAGT+GGG | + | chr1_2:57856989-57857008 | None:intergenic | 45.0% |
| GCATGAATTATGTGGGAGCA+TGG | - | chr1_2:57857081-57857100 | Msa0079820:intron | 45.0% | |
| GAATAAAGGGTAGGACACTG+AGG | + | chr1_2:57857196-57857215 | None:intergenic | 45.0% | |
| CGTTTCTCCCTAGATCATAC+TGG | - | chr1_2:57857279-57857298 | Msa0079820:CDS | 45.0% | |
| CAAAGACGCCAGTATGATCT+AGG | + | chr1_2:57857290-57857309 | None:intergenic | 45.0% | |
| AGATCATACTGGCGTCTTTG+TGG | - | chr1_2:57857290-57857309 | Msa0079820:CDS | 45.0% | |
| GGGAGACAAGTTCATCTTAG+AGG | - | chr1_2:57857447-57857466 | Msa0079820:CDS | 45.0% | |
| !! | ATATATGAAATATTATTTAA+CGG | - | chr1_2:57852426-57852445 | Msa0079820:intron | 5.0% |
| !! | AGTAAATTATTATTAATATA+TGG | + | chr1_2:57854444-57854463 | None:intergenic | 5.0% |
| !! | ATATATTAATAATAATTTAC+TGG | - | chr1_2:57854443-57854462 | Msa0079820:intron | 5.0% |
| !!! | GAAATTTTATTAATTTAATT+TGG | - | chr1_2:57854695-57854714 | Msa0079820:intron | 5.0% |
| !!! | TTAAAAAAAAAATTATGTTT+TGG | - | chr1_2:57854747-57854766 | Msa0079820:intron | 5.0% |
| !! | ATTAAAAAAAAAGTAAAATA+CGG | + | chr1_2:57854806-57854825 | None:intergenic | 5.0% |
| !!! | TTTTACTTTTTTTTTAATTT+TGG | - | chr1_2:57854808-57854827 | Msa0079820:intron | 5.0% |
| !! | TATATTTAATAGAAAATTAA+AGG | + | chr1_2:57855091-57855110 | None:intergenic | 5.0% |
| TCTGCAGCTACCCAGAAGAT+GGG | + | chr1_2:57851644-57851663 | None:intergenic | 50.0% | |
| TTCTGCAGCTACCCAGAAGA+TGG | + | chr1_2:57851645-57851664 | None:intergenic | 50.0% | |
| ! | ATAGGGCGGACTTGTGCATT+AGG | + | chr1_2:57851897-57851916 | None:intergenic | 50.0% |
| TAATGCACAAGTCCGCCCTA+TGG | - | chr1_2:57851896-57851915 | Msa0079820:CDS | 50.0% | |
| ! | CACCTTTTCCAGATAGAGGG+CGG | + | chr1_2:57852537-57852556 | None:intergenic | 50.0% |
| ! | CCACCACCTTTTCCAGATAG+AGG | + | chr1_2:57852541-57852560 | None:intergenic | 50.0% |
| CCTCTATCTGGAAAAGGTGG+TGG | - | chr1_2:57852538-57852557 | Msa0079820:intron | 50.0% | |
| CAGATTTGCCTGTCAAGTCC+AGG | - | chr1_2:57853413-57853432 | Msa0079820:CDS | 50.0% | |
| GGGGGCAAATAAAAAGGGAG+TGG | + | chr1_2:57853998-57854017 | None:intergenic | 50.0% | |
| CGTGAGACACCATCAAAACC+TGG | - | chr1_2:57855888-57855907 | Msa0079820:intron | 50.0% | |
| !! | CCAATCGGACCAGGTTTTGA+TGG | + | chr1_2:57855900-57855919 | None:intergenic | 50.0% |
| CCATCAAAACCTGGTCCGAT+TGG | - | chr1_2:57855897-57855916 | Msa0079820:intron | 50.0% | |
| CTACTCAATCCAATCGGACC+AGG | + | chr1_2:57855909-57855928 | None:intergenic | 50.0% | |
| GCATGCCTGTGTAACCTGTT+AGG | - | chr1_2:57856163-57856182 | Msa0079820:intron | 50.0% | |
| CTCTTCTGGATAGGCCTAAC+AGG | + | chr1_2:57856180-57856199 | None:intergenic | 50.0% | |
| TCCCAGTACTCATGACACCA+AGG | + | chr1_2:57856454-57856473 | None:intergenic | 50.0% | |
| GAGGAGAGTCAGATCAGAAG+AGG | - | chr1_2:57856853-57856872 | Msa0079820:intron | 50.0% | |
| CGAACCCACTTAGTGGGATA+AGG | - | chr1_2:57856982-57857001 | Msa0079820:intron | 50.0% | |
| ! | CGAAGCCTTATCCCACTAAG+TGG | + | chr1_2:57856990-57857009 | None:intergenic | 50.0% |
| CATACTGGCGTCTTTGTGGA+CGG | - | chr1_2:57857294-57857313 | Msa0079820:CDS | 50.0% | |
| AAGGATTGCCGCCCTCTATC+TGG | - | chr1_2:57852526-57852545 | Msa0079820:intron | 55.0% | |
| TGCCGCCCTCTATCTGGAAA+AGG | - | chr1_2:57852532-57852551 | Msa0079820:intron | 55.0% | |
| CGCCCTCTATCTGGAAAAGG+TGG | - | chr1_2:57852535-57852554 | Msa0079820:intron | 55.0% | |
| GGCAGTGGCCCTTTCTTCTA+TGG | - | chr1_2:57854129-57854148 | Msa0079820:intron | 55.0% | |
| ACGAACTCTGCGTGCTCGTA+TGG | - | chr1_2:57855740-57855759 | Msa0079820:CDS | 55.0% | |
| AGACCCTATGGCCCTAGCAA+AGG | + | chr1_2:57855940-57855959 | None:intergenic | 55.0% | |
| TCTGCTGCGCAGAACCTTTC+TGG | - | chr1_2:57856037-57856056 | Msa0079820:intron | 55.0% | |
| CTGCTGCGCAGAACCTTTCT+GGG | - | chr1_2:57856038-57856057 | Msa0079820:intron | 55.0% | |
| GAGCATGGGGCCATAGCAAA+GGG | - | chr1_2:57857096-57857115 | Msa0079820:intron | 55.0% | |
| GGAGCATGGGGCCATAGCAA+AGG | - | chr1_2:57857095-57857114 | Msa0079820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57851497 | 57857677 | 57851497 | ID=Msa0079820;Name=Msa0079820 |
| chr1_2 | mRNA | 57851497 | 57857677 | 57851497 | ID=Msa0079820-mRNA-1;Parent=Msa0079820;Name=Msa0079820-mRNA-1;_AED=0.11;_eAED=0.11;_QI=74|1|1|1|1|1|10|340|288 |
| chr1_2 | exon | 57851497 | 57851932 | 57851497 | ID=Msa0079820-mRNA-1:exon:18418;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57852600 | 57852656 | 57852600 | ID=Msa0079820-mRNA-1:exon:18417;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57852770 | 57852838 | 57852770 | ID=Msa0079820-mRNA-1:exon:18416;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57853413 | 57853514 | 57853413 | ID=Msa0079820-mRNA-1:exon:18415;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57853624 | 57853692 | 57853624 | ID=Msa0079820-mRNA-1:exon:18414;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57854886 | 57854975 | 57854886 | ID=Msa0079820-mRNA-1:exon:18413;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57855285 | 57855336 | 57855285 | ID=Msa0079820-mRNA-1:exon:18412;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57855688 | 57855767 | 57855688 | ID=Msa0079820-mRNA-1:exon:18411;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57857257 | 57857343 | 57857257 | ID=Msa0079820-mRNA-1:exon:18410;Parent=Msa0079820-mRNA-1 |
| chr1_2 | exon | 57857439 | 57857677 | 57857439 | ID=Msa0079820-mRNA-1:exon:18409;Parent=Msa0079820-mRNA-1 |
| chr1_2 | five_prime_UTR | 57857604 | 57857677 | 57857604 | ID=Msa0079820-mRNA-1:five_prime_utr;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57857439 | 57857603 | 57857439 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57857257 | 57857343 | 57857257 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57855688 | 57855767 | 57855688 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57855285 | 57855336 | 57855285 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57854886 | 57854975 | 57854886 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57853624 | 57853692 | 57853624 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57853413 | 57853514 | 57853413 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57852770 | 57852838 | 57852770 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57852600 | 57852656 | 57852600 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | CDS | 57851837 | 57851932 | 57851837 | ID=Msa0079820-mRNA-1:cds;Parent=Msa0079820-mRNA-1 |
| chr1_2 | three_prime_UTR | 57851497 | 57851836 | 57851497 | ID=Msa0079820-mRNA-1:three_prime_utr;Parent=Msa0079820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
