AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098070 MtrunA17_Chr1g0152131 98.104 422 7 1 1 422 1 421 0.0 847
Msa0098070 MtrunA17_Chr5g0421111 54.726 201 63 5 195 391 299 475 1.87e-56 195
Msa0098070 MtrunA17_Chr8g0365941 41.768 328 136 10 93 391 114 415 7.45e-56 191
Msa0098070 MtrunA17_Chr7g0234761 39.752 322 152 8 75 355 91 411 1.12e-51 181
Msa0098070 MtrunA17_Chr3g0144641 46.890 209 79 4 233 409 163 371 1.31e-50 175
Msa0098070 MtrunA17_Chr8g0339091 38.701 354 160 15 88 391 81 427 4.42e-49 174
Msa0098070 MtrunA17_Chr4g0035101 70.093 107 30 1 244 348 124 230 2.47e-44 157
Msa0098070 MtrunA17_Chr8g0363921 47.475 198 96 4 171 360 53 250 2.22e-43 153
Msa0098070 MtrunA17_Chr3g0131771 66.981 106 32 1 243 345 129 234 1.39e-40 147
Msa0098070 MtrunA17_Chr8g0385911 73.626 91 21 1 258 345 142 232 4.80e-40 145
Msa0098070 MtrunA17_Chr7g0258161 68.041 97 31 0 250 346 162 258 8.77e-40 145
Msa0098070 MtrunA17_Chr5g0415291 60.484 124 44 2 209 332 65 183 1.13e-38 139
Msa0098070 MtrunA17_Chr1g0174161 63.918 97 35 0 250 346 149 245 2.40e-37 138
Msa0098070 MtrunA17_Chr6g0484271 60.000 100 39 1 241 340 136 234 2.86e-32 123
Msa0098070 MtrunA17_Chr4g0074161 60.241 83 32 1 244 326 189 270 2.13e-22 98.6
Msa0098070 MtrunA17_Chr1g0190731 67.164 67 21 1 260 326 192 257 5.40e-21 93.6
Msa0098070 MtrunA17_Chr4g0014771 58.462 65 27 0 261 325 118 182 1.36e-16 77.8
Msa0098070 MtrunA17_Chr2g0329041 43.158 95 46 1 247 333 310 404 3.27e-16 80.1
Msa0098070 MtrunA17_Chr1g0174271 52.055 73 35 0 259 331 296 368 3.69e-16 79.7
Msa0098070 MtrunA17_Chr7g0258181 52.113 71 34 0 261 331 243 313 4.89e-16 78.6
Msa0098070 MtrunA17_Chr4g0032951 56.716 67 29 0 259 325 353 419 5.43e-16 79.7
Msa0098070 MtrunA17_Chr1g0193321 47.945 73 37 1 263 335 464 535 1.00e-15 79.3
Msa0098070 MtrunA17_Chr1g0184841 51.579 95 45 1 232 326 91 184 2.82e-15 75.9
Msa0098070 MtrunA17_Chr1g0182791 52.174 69 32 1 263 331 319 386 4.18e-15 77.4
Msa0098070 MtrunA17_Chr3g0095391 41.284 109 59 3 222 326 266 373 7.43e-14 73.2
Msa0098070 MtrunA17_Chr3g0087771 47.761 67 35 0 259 325 320 386 5.05e-13 70.5
Msa0098070 MtrunA17_Chr7g0262691 40.000 100 56 2 230 326 218 316 7.07e-13 70.1
Msa0098070 MtrunA17_Chr7g0270871 48.387 62 31 1 272 333 213 273 2.25e-12 68.2
Msa0098070 MtrunA17_Chr1g0152651 50.769 65 31 1 261 325 274 337 2.72e-12 67.8
Msa0098070 MtrunA17_Chr8g0351881 39.506 81 41 1 253 325 300 380 4.80e-12 67.4
Msa0098070 MtrunA17_Chr1g0153241 46.154 65 34 1 263 327 87 150 4.95e-12 65.9
Msa0098070 MtrunA17_Chr7g0271251 53.125 64 29 1 263 326 434 496 1.11e-11 66.6
Msa0098070 MtrunA17_Chr3g0134741 51.562 64 30 1 262 325 230 292 1.94e-11 64.7
Msa0098070 MtrunA17_Chr7g0231461 48.438 64 32 1 261 324 297 359 6.43e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098070 AT1G10120.2 41.553 438 163 20 1 422 1 361 2.42e-72 231
Msa0098070 AT1G10120.1 41.553 438 163 20 1 422 1 361 2.42e-72 231
Msa0098070 AT1G68920.1 63.871 155 30 3 238 392 286 414 3.66e-55 190
Msa0098070 AT1G68920.4 63.871 155 30 3 238 392 286 414 3.66e-55 190
Msa0098070 AT1G68920.2 63.871 155 30 3 238 392 286 414 3.66e-55 190
Msa0098070 AT1G68920.3 63.871 155 30 3 238 392 285 413 3.74e-55 190
Msa0098070 AT1G26260.3 69.231 130 34 2 226 350 133 261 7.97e-52 177
Msa0098070 AT1G26260.5 64.583 144 45 2 212 350 148 290 1.70e-51 177
Msa0098070 AT1G26260.4 64.583 144 45 2 212 350 170 312 2.42e-51 177
Msa0098070 AT1G26260.1 64.583 144 45 2 212 350 170 312 2.42e-51 177
Msa0098070 AT1G26260.6 64.583 144 45 2 212 350 170 312 2.42e-51 177
Msa0098070 AT1G26260.2 64.583 144 45 2 212 350 170 312 2.42e-51 177
Msa0098070 AT3G07340.2 64.964 137 42 3 218 350 213 347 1.75e-48 171
Msa0098070 AT3G07340.1 64.964 137 42 3 218 350 213 347 2.82e-48 171
Msa0098070 AT3G23690.1 54.598 174 65 5 245 408 176 345 1.80e-46 164
Msa0098070 AT4G34530.1 70.408 98 29 0 250 347 161 258 2.73e-43 155
Msa0098070 AT5G48560.2 77.419 93 20 1 257 348 297 389 4.99e-43 157
Msa0098070 AT5G48560.1 77.419 93 20 1 257 348 297 389 9.89e-43 157
Msa0098070 AT5G50915.3 51.163 172 61 5 225 396 106 254 1.07e-42 151
Msa0098070 AT5G50915.4 51.163 172 61 5 225 396 106 254 1.07e-42 151
Msa0098070 AT5G50915.1 51.163 172 61 5 225 396 106 254 1.38e-42 151
Msa0098070 AT5G50915.2 51.163 172 61 5 225 396 106 254 1.38e-42 151
Msa0098070 AT4G36540.2 54.225 142 59 3 205 345 89 225 1.72e-40 146
Msa0098070 AT4G36540.1 54.225 142 59 3 205 345 89 225 1.90e-40 146
Msa0098070 AT1G59640.1 49.057 159 74 2 191 349 73 224 2.48e-40 145
Msa0098070 AT1G59640.2 48.734 158 74 2 191 348 73 223 3.48e-40 147
Msa0098070 AT2G18300.1 54.610 141 46 2 218 340 124 264 5.14e-40 146
Msa0098070 AT2G18300.2 54.610 141 46 2 218 340 124 264 5.61e-40 146
Msa0098070 AT2G18300.3 54.610 141 46 2 218 340 124 264 1.06e-39 146
Msa0098070 AT3G57800.2 37.066 259 124 5 126 346 32 289 4.20e-39 144
Msa0098070 AT2G42300.4 62.500 96 36 0 252 347 176 271 1.15e-37 138
Msa0098070 AT2G42300.1 63.158 95 35 0 252 346 176 270 1.04e-36 137
Msa0098070 AT5G62610.2 49.057 159 68 4 186 332 67 224 3.36e-35 132
Msa0098070 AT5G62610.1 49.057 159 68 4 186 332 67 224 3.36e-35 132
Msa0098070 AT1G18400.2 70.732 82 24 0 259 340 143 224 5.57e-33 124
Msa0098070 AT1G18400.1 70.732 82 24 0 259 340 143 224 8.63e-33 124
Msa0098070 AT1G73830.2 69.136 81 25 0 260 340 146 226 7.43e-32 122
Msa0098070 AT1G73830.1 69.136 81 25 0 260 340 146 226 8.34e-32 122
Msa0098070 AT1G25330.1 50.806 124 50 1 257 369 100 223 1.86e-31 120
Msa0098070 AT3G57800.1 31.373 306 124 6 126 346 32 336 1.52e-30 122
Msa0098070 AT2G24260.2 69.697 66 19 1 261 326 35 99 2.66e-22 95.9
Msa0098070 AT5G58010.1 62.963 81 25 2 260 336 98 177 3.08e-22 96.7
Msa0098070 AT4G30980.1 71.212 66 18 1 261 326 130 194 5.32e-22 96.3
Msa0098070 AT4G30980.2 71.212 66 18 1 261 326 178 242 9.49e-22 96.3
Msa0098070 AT2G24260.1 69.697 66 19 1 261 326 138 202 1.19e-21 95.9
Msa0098070 AT2G42300.5 68.000 50 16 0 252 301 176 225 3.52e-17 80.9
Msa0098070 AT2G42300.3 68.000 50 16 0 252 301 176 225 3.52e-17 80.9
Msa0098070 AT2G42300.2 69.388 49 15 0 252 300 176 224 4.00e-17 80.9
Msa0098070 AT4G09180.1 42.056 107 49 3 241 334 153 259 1.23e-15 77.0
Msa0098070 AT1G35460.1 53.731 67 31 0 259 325 179 245 1.68e-15 76.6
Msa0098070 AT2G20180.7 41.053 95 55 1 232 326 178 271 1.99e-15 78.2
Msa0098070 AT2G20180.1 41.053 95 55 1 232 326 178 271 1.99e-15 78.2
Msa0098070 AT2G20180.5 41.053 95 55 1 232 326 178 271 1.99e-15 78.2
Msa0098070 AT2G20180.4 41.053 95 55 1 232 326 249 342 2.42e-15 78.2
Msa0098070 AT2G20180.6 41.053 95 55 1 232 326 249 342 2.42e-15 78.2
Msa0098070 AT2G20180.2 41.053 95 55 1 232 326 249 342 2.42e-15 78.2
Msa0098070 AT2G20180.3 41.053 95 55 1 232 326 249 342 2.42e-15 78.2
Msa0098070 AT2G42280.1 54.688 64 29 0 261 324 279 342 3.22e-15 77.0
Msa0098070 AT1G09530.3 53.125 64 29 1 263 326 339 401 4.68e-15 77.4
Msa0098070 AT1G09530.2 53.125 64 29 1 263 326 339 401 4.68e-15 77.4
Msa0098070 AT1G09530.5 53.125 64 29 1 263 326 339 401 4.68e-15 77.4
Msa0098070 AT1G09530.1 53.125 64 29 1 263 326 339 401 4.68e-15 77.4
Msa0098070 AT1G09530.4 53.125 64 29 1 263 326 339 401 4.68e-15 77.4
Msa0098070 AT1G09530.6 53.125 64 29 1 263 326 339 401 4.68e-15 77.4
Msa0098070 AT2G42280.3 56.061 66 27 1 261 324 279 344 5.43e-15 76.3
Msa0098070 AT1G51140.1 56.250 64 28 0 261 324 304 367 6.75e-15 76.3
Msa0098070 AT4G28790.1 35.156 128 64 3 211 333 229 342 1.69e-14 75.5
Msa0098070 AT2G20180.8 40.217 92 54 1 232 323 249 339 5.24e-14 73.2
Msa0098070 AT4G02590.3 64.179 67 23 1 260 326 82 147 7.14e-14 71.6
Msa0098070 AT4G02590.2 64.179 67 23 1 260 326 145 210 8.66e-14 72.4
Msa0098070 AT4G02590.1 64.179 67 23 1 260 326 145 210 8.66e-14 72.4
Msa0098070 AT4G28815.2 55.172 58 25 1 264 321 71 127 9.91e-14 70.9
Msa0098070 AT4G28800.1 35.338 133 68 6 264 389 252 373 1.04e-13 73.2
Msa0098070 AT1G03040.2 64.179 67 23 1 260 326 138 203 1.32e-13 71.6
Msa0098070 AT1G03040.1 65.152 66 22 1 261 326 144 208 1.52e-13 71.2
Msa0098070 AT1G03040.3 64.179 67 23 1 260 326 143 208 2.75e-13 70.9
Msa0098070 AT4G28815.1 55.172 58 25 1 264 321 147 203 3.38e-13 70.5
Msa0098070 AT4G28790.2 35.897 117 56 3 211 322 229 331 4.88e-13 70.5
Msa0098070 AT4G28800.2 52.542 59 27 1 264 322 264 321 3.12e-12 68.6
Msa0098070 AT4G00050.2 49.231 65 32 1 261 325 105 168 7.80e-12 66.2
Msa0098070 AT2G46970.1 41.250 80 41 2 259 333 216 294 1.12e-11 66.6
Msa0098070 AT2G46970.2 41.250 80 41 2 259 333 185 263 1.16e-11 66.6
Msa0098070 AT2G46970.3 41.250 80 41 2 259 333 194 272 1.39e-11 66.2
Msa0098070 AT4G00050.1 49.231 65 32 1 261 325 207 270 1.45e-11 66.2
Msa0098070 AT4G00050.3 49.231 65 32 1 261 325 207 270 1.55e-11 65.9
Msa0098070 AT4G33880.1 49.231 65 32 1 261 325 266 329 1.58e-11 65.9
Msa0098070 AT2G43140.2 48.485 66 34 0 259 324 229 294 1.90e-11 65.1
Msa0098070 AT2G43140.1 48.485 66 34 0 259 324 132 197 3.74e-11 62.8
Msa0098070 AT4G36930.1 49.180 61 30 1 267 327 197 256 8.88e-11 63.5

Find 143 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACTACCTTTGTTGTTTA+TGG 0.090730 1_3:+4008265 Msa0098070:five_prime_UTR
CAATACAACACTTGACAATT+TGG 0.149023 1_3:+4011688 Msa0098070:CDS
TACTACCCAATTGGTGAAAT+TGG 0.178979 1_3:+4008289 Msa0098070:five_prime_UTR
TTCCCTGATTGTTCAACTTT+TGG 0.193603 1_3:-4010226 None:intergenic
ATCTTATAACCCTCTTGTTT+TGG 0.236824 1_3:+4009397 Msa0098070:CDS
GTACTTGTATTTGATTCTTT+TGG 0.244214 1_3:+4008397 Msa0098070:five_prime_UTR
TTGAGTCAAGCTCATACTTT+TGG 0.246530 1_3:+4009329 Msa0098070:CDS
ATCCCATTCCATAAAAGTTT+TGG 0.257326 1_3:-4011658 None:intergenic
TATTAGTTCTGTGTCAAATA+TGG 0.262900 1_3:+4009217 Msa0098070:CDS
AAGATCTTCACTTACATCTT+TGG 0.264618 1_3:-4011096 None:intergenic
TTCTTCTCTTATTAGATAAC+TGG 0.273700 1_3:+4010677 Msa0098070:intron
TCAGAAATGGTTGGTTCCTT+TGG 0.277793 1_3:+4009515 Msa0098070:CDS
GCTTAGAAACAAACCTTGTT+TGG 0.285521 1_3:-4009758 None:intergenic
ATCCAAAGGGGTCAAATTAA+TGG 0.316200 1_3:+4009626 Msa0098070:CDS
TTGCTTCAAGAACTTGTTCC+AGG 0.318899 1_3:+4010494 Msa0098070:CDS
CAAGTTTCCTCAGTCATTGC+AGG 0.330648 1_3:+4008367 Msa0098070:five_prime_UTR
CTTGTTCAATACTCAAATCT+TGG 0.340230 1_3:+4009449 Msa0098070:CDS
GCAGCAGCAGCATCATTTCA+TGG 0.345728 1_3:+4009274 Msa0098070:CDS
AAATGCATATAAATGATTAA+AGG 0.347202 1_3:-4009005 None:intergenic
CAAATTGTCAAGTGTTGTAT+TGG 0.347363 1_3:-4011687 None:intergenic
CACCATTAATTTGACCCCTT+TGG 0.347434 1_3:-4009628 None:intergenic
TTTGGGACCCAATGGTAAAT+AGG 0.351250 1_3:+4011706 Msa0098070:CDS
ATTCCCAAACGCAAGTTTCC+AGG 0.357553 1_3:+4011474 Msa0098070:CDS
AGAGACATAGACATAGAAAA+AGG 0.359398 1_3:+4009088 Msa0098070:five_prime_UTR
AGAGTTATATTAAGATTAAG+AGG 0.362493 1_3:-4008464 None:intergenic
CTCCAGTCACGCTTAGGACT+TGG 0.365208 1_3:+4011412 Msa0098070:CDS
AATACAACACTTGACAATTT+GGG 0.372449 1_3:+4011689 Msa0098070:CDS
CTTGAGCCAATTGCTGAGTC+AGG 0.372677 1_3:+4009028 Msa0098070:five_prime_UTR
AATGCATATAAATGATTAAA+GGG 0.377617 1_3:-4009004 None:intergenic
TCCTTTGGCCAACATGGGTC+AGG 0.379373 1_3:+4009530 Msa0098070:CDS
AAACCAAAAGTTGAACAATC+AGG 0.388796 1_3:+4010223 Msa0098070:CDS
ATTTCATGGCTTCTTCAGCT+TGG 0.391101 1_3:+4009288 Msa0098070:CDS
CTACATCAAAGTTCAGTTCC+GGG 0.392601 1_3:-4011061 None:intergenic
TTCTTGTCCATCTTCAGAAA+TGG 0.392622 1_3:+4009193 Msa0098070:CDS
AAATTGTCAAGTGTTGTATT+GGG 0.393591 1_3:-4011686 None:intergenic
TCTACATCAAAGTTCAGTTC+CGG 0.395058 1_3:-4011062 None:intergenic
TTTCATGGCTTCTTCAGCTT+GGG 0.397346 1_3:+4009289 Msa0098070:CDS
TACCCTGGAAACTTGCGTTT+GGG 0.399150 1_3:-4011477 None:intergenic
GGAATCGGTGGATTTGTTCC+TGG 0.401252 1_3:+4011433 Msa0098070:CDS
AAGTGGAAGTTTCTCAGAAA+TGG 0.401403 1_3:+4009502 Msa0098070:CDS
CTGCAATGACTGAGGAAACT+TGG 0.404304 1_3:-4008366 None:intergenic
TATGTACATGCAGAATGCTT+TGG 0.415983 1_3:+4011625 Msa0098070:intron
TATCAATAGTTATAAGAAGA+AGG 0.423090 1_3:-4008508 None:intergenic
TTATAATGCTGTGATGGAAT+TGG 0.423796 1_3:-4009584 None:intergenic
TGCAAGACTGTGGCTGTTGG+TGG 0.430341 1_3:-4010326 None:intergenic
TTACCCTGGAAACTTGCGTT+TGG 0.431578 1_3:-4011478 None:intergenic
GATTCTGCCTATTTACCATT+GGG 0.432301 1_3:-4011713 None:intergenic
TTTGGCCAACATGGGTCAGG+TGG 0.434581 1_3:+4009533 Msa0098070:CDS
TGGCTCAAGAGATATCTTGC+AGG 0.441362 1_3:-4008960 None:intergenic
GACTGTGGACAAAGGAGAAA+AGG 0.443873 1_3:+4008598 Msa0098070:five_prime_UTR
AACAATCCTGACTCAGCAAT+TGG 0.444131 1_3:-4009034 None:intergenic
TTCCAAGTCCTAAGCGTGAC+TGG 0.444135 1_3:-4011414 None:intergenic
ATCGCTACCTTGTTGCATCC+TGG 0.450261 1_3:-4010512 None:intergenic
GTTGGTTCCTTTGGCCAACA+TGG 0.452089 1_3:+4009524 Msa0098070:CDS
CAGCCACAGTCTTGCAGAAA+GGG 0.452630 1_3:+4010333 Msa0098070:CDS
GAACCATCAGAAATCTTCCT+TGG 0.455036 1_3:-4010184 None:intergenic
GAACATGTAGCTAACACATC+AGG 0.456379 1_3:+4009557 Msa0098070:CDS
ACAGGATCTGCACCTGGTAG+TGG 0.456742 1_3:+4009692 Msa0098070:CDS
TTCTGCAAGACTGTGGCTGT+TGG 0.459429 1_3:-4010329 None:intergenic
ATTCATGAGGATGGAGGTAC+AGG 0.461324 1_3:+4009674 Msa0098070:CDS
CTAATATCCATTTCTGAAGA+TGG 0.462754 1_3:-4009200 None:intergenic
ATCCACAAGATTCCTTCCTA+TGG 0.466206 1_3:+4009479 Msa0098070:CDS
TGTGCAATCACTGCAGCAAC+AGG 0.471611 1_3:+4010733 Msa0098070:CDS
AAAGTTCAGTTCCGGGTTCA+CGG 0.473106 1_3:-4011054 None:intergenic
TAGATTCTCCAGTCACGCTT+AGG 0.473536 1_3:+4011406 Msa0098070:intron
TTCTTTCTTGAATTAAGAGA+TGG 0.473587 1_3:+4009118 Msa0098070:exon
TGGAAACTTGCGTTTGGGAA+TGG 0.479393 1_3:-4011472 None:intergenic
AGATTCTGCCTATTTACCAT+TGG 0.482332 1_3:-4011714 None:intergenic
GTTTATGGTTACTACCCAAT+TGG 0.482901 1_3:+4008280 Msa0098070:five_prime_UTR
CGCTTAGGACTTGGAATCGG+TGG 0.488486 1_3:+4011421 Msa0098070:CDS
ACAGTTCCCTCCTTTGCCTC+AGG 0.492804 1_3:+4011528 Msa0098070:CDS
ATCACTGCAGCAACAGGTTG+AGG 0.493756 1_3:+4010739 Msa0098070:CDS
CGCAAGTTTCCAGGGTAACA+TGG 0.498356 1_3:+4011483 Msa0098070:CDS
TATAATCACATCAAGGATGC+TGG 0.503047 1_3:+4009602 Msa0098070:CDS
GAAACTTGCCACCGTGAACC+CGG 0.509079 1_3:+4011043 Msa0098070:CDS
CAAGGATGCTGGAATCCAAA+GGG 0.509335 1_3:+4009613 Msa0098070:CDS
GTTCAATACTCAAATCTTGG+AGG 0.510892 1_3:+4009452 Msa0098070:CDS
AAGATTCCTTCCTATGGAAG+TGG 0.511892 1_3:+4009485 Msa0098070:CDS
TGAGAAACTTCCACTTCCAT+AGG 0.519524 1_3:-4009495 None:intergenic
TTTCTTCTACTTCCACTACC+AGG 0.520640 1_3:-4009704 None:intergenic
AACTTGGAAGTGAAAGGGAC+AGG 0.526946 1_3:-4008350 None:intergenic
AAAAGATTAGTGAACGAATG+AGG 0.527173 1_3:+4010471 Msa0098070:CDS
GGATGAGAGGAGCTTATACC+AGG 0.529199 1_3:-4011451 None:intergenic
ACAGCCACAGTCTTGCAGAA+AGG 0.531570 1_3:+4010332 Msa0098070:CDS
GGAAGTTTCTCAGAAATGGT+TGG 0.538496 1_3:+4009506 Msa0098070:CDS
TTGGTTCCTTTGGCCAACAT+GGG 0.538891 1_3:+4009525 Msa0098070:CDS
GATTAGAATGCTGAGGGTGA+TGG 0.542730 1_3:+4010148 Msa0098070:intron
ATGCTCTTAACAAGACTGAA+AGG 0.547541 1_3:+4008715 Msa0098070:five_prime_UTR
AGTTTCCAGGGTAACATGGC+TGG 0.548496 1_3:+4011487 Msa0098070:CDS
TGAGGAAACTTGGAAGTGAA+AGG 0.550184 1_3:-4008356 None:intergenic
TTCTACTTTCAGTCCAAACA+AGG 0.550639 1_3:+4009745 Msa0098070:CDS
TCTTTCTTGAATTAAGAGAT+GGG 0.551193 1_3:+4009119 Msa0098070:exon
TTGGCCAACATGGGTCAGGT+GGG 0.552278 1_3:+4009534 Msa0098070:CDS
AACCAAAAGTTGAACAATCA+GGG 0.556875 1_3:+4010224 Msa0098070:CDS
TCTCCAAGGAAGATTTCTGA+TGG 0.568713 1_3:+4010181 Msa0098070:CDS
ACCTGACCCATGTTGGCCAA+AGG 0.569057 1_3:-4009531 None:intergenic
TTCCCAAACGCAAGTTTCCA+GGG 0.570083 1_3:+4011475 Msa0098070:CDS
TTTCTTGCTTGTATCAGAGA+GGG 0.571979 1_3:+4008746 Msa0098070:five_prime_UTR
GAGGAAACTTGGAAGTGAAA+GGG 0.572419 1_3:-4008355 None:intergenic
TGGTGAACAATCTCAGATTG+AGG 0.578059 1_3:+4009646 Msa0098070:CDS
GGGAACTGTGTTGATGAACT+AGG 0.579147 1_3:-4011514 None:intergenic
TCACGCTTAGGACTTGGAAT+CGG 0.580584 1_3:+4011418 Msa0098070:CDS
GCATGCCAGCCATGTTACCC+TGG 0.580745 1_3:-4011492 None:intergenic
ACTGTGGACAAAGGAGAAAA+GGG 0.582202 1_3:+4008599 Msa0098070:five_prime_UTR
TAAACAAGGAACAAATAACT+TGG 0.582620 1_3:-4008935 None:intergenic
AACTGAACTTTGATGTAGAA+CGG 0.586015 1_3:+4011066 Msa0098070:CDS
CTTGACAATTTGGGACCCAA+TGG 0.588420 1_3:+4011698 Msa0098070:CDS
TCAAGGATGCTGGAATCCAA+AGG 0.589904 1_3:+4009612 Msa0098070:CDS
ATGTGATTATAATGCTGTGA+TGG 0.590061 1_3:-4009590 None:intergenic
AATGTTGAAAGTGAAAGTGT+TGG 0.590146 1_3:-4008440 None:intergenic
GAGGACTCTATTCATGAGGA+TGG 0.590188 1_3:+4009665 Msa0098070:CDS
CCTTGATTCTCCAAAACAAG+AGG 0.592951 1_3:-4009407 None:intergenic
AAACTTCCACTTCCATAGGA+AGG 0.598638 1_3:-4009491 None:intergenic
GCTTGACTCAATGAAACAAG+TGG 0.600555 1_3:-4009317 None:intergenic
TTCCATAGGAAGGAATCTTG+TGG 0.606199 1_3:-4009481 None:intergenic
GGGTGGTGAGGAAAATGCAA+TGG 0.606665 1_3:+4009139 Msa0098070:CDS
TCTTTAGAAGCATCTCCACT+CGG 0.607421 1_3:-4010268 None:intergenic
TGGCCAACATGGGTCAGGTG+GGG 0.608930 1_3:+4009535 Msa0098070:CDS
TGCGTTTGGGAATGGATGAG+AGG 0.610999 1_3:-4011464 None:intergenic
CTTGATTCTCCAAAACAAGA+GGG 0.612056 1_3:-4009406 None:intergenic
ACAGCATTATAATCACATCA+AGG 0.612365 1_3:+4009595 Msa0098070:CDS
GTTCCCCACCTGACCCATGT+TGG 0.625912 1_3:-4009538 None:intergenic
TAAGTTTGTTGTGTGGACTG+TGG 0.626396 1_3:+4008583 Msa0098070:five_prime_UTR
GAATTAAGAGATGGGTGGTG+AGG 0.626693 1_3:+4009127 Msa0098070:exon
ATATCTTGCAGGACTAAACA+AGG 0.628784 1_3:-4008949 None:intergenic
AACATGTAGCTAACACATCA+GGG 0.630115 1_3:+4009558 Msa0098070:CDS
GAACTTGGATTAGAATGCTG+AGG 0.632192 1_3:+4010141 Msa0098070:intron
GGAGGTACAGGATCTGCACC+TGG 0.632655 1_3:+4009686 Msa0098070:CDS
GTACCCTTTCTGCAAGACTG+TGG 0.636291 1_3:-4010336 None:intergenic
TCAAAATCCTGCAATGACTG+AGG 0.636610 1_3:-4008374 None:intergenic
AACTTGGATTAGAATGCTGA+GGG 0.637008 1_3:+4010142 Msa0098070:intron
ATGGAGTGAAAGATTCTCCA+AGG 0.638409 1_3:+4010167 Msa0098070:CDS
GATTGAGGACTCTATTCATG+AGG 0.640742 1_3:+4009661 Msa0098070:CDS
AATGCAATGGAGTTTCAACA+TGG 0.644756 1_3:+4009152 Msa0098070:CDS
ATTCATGTGAGAGCTAGAAG+AGG 0.658128 1_3:+4010298 Msa0098070:CDS
GACTCTATTCATGAGGATGG+AGG 0.659616 1_3:+4009668 Msa0098070:CDS
TTCTTGAATTAAGAGATGGG+TGG 0.661303 1_3:+4009122 Msa0098070:exon
GTTGTGTGGACTGTGGACAA+AGG 0.667680 1_3:+4008590 Msa0098070:five_prime_UTR
GTAGTAACCATAAACAACAA+AGG 0.668529 1_3:-4008272 None:intergenic
ACTTGTTCCAGGATGCAACA+AGG 0.687844 1_3:+4010505 Msa0098070:CDS
AAGGATGCTGGAATCCAAAG+GGG 0.724973 1_3:+4009614 Msa0098070:CDS
GCTAAAGATAACTCTCCGAG+TGG 0.729396 1_3:+4010253 Msa0098070:CDS
GTTCAGTTCCGGGTTCACGG+TGG 0.752023 1_3:-4011051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGCATATAAATGATTAAA+GGG - chr1_3:4009007-4009026 None:intergenic 15.0%
!! AAATGCATATAAATGATTAA+AGG - chr1_3:4009008-4009027 None:intergenic 15.0%
!! AGAGTTATATTAAGATTAAG+AGG - chr1_3:4008467-4008486 None:intergenic 20.0%
!! TATCAATAGTTATAAGAAGA+AGG - chr1_3:4008511-4008530 None:intergenic 20.0%
!!! TTAGATTTTTATTTGATCCT+AGG + chr1_3:4008786-4008805 Msa0098070:five_prime_UTR 20.0%
!!! TAGATTTTTATTTGATCCTA+GGG + chr1_3:4008787-4008806 Msa0098070:five_prime_UTR 20.0%
!!! TATTCTATTTTATGAGAAGA+AGG + chr1_3:4008851-4008870 Msa0098070:five_prime_UTR 20.0%
!!! ATTCTATTTTATGAGAAGAA+GGG + chr1_3:4008852-4008871 Msa0098070:five_prime_UTR 20.0%
!!! TTAGTTGTTAATTTGTTAGA+GGG + chr1_3:4009841-4009860 Msa0098070:intron 20.0%
!! TGAAATATCTTATATATGCT+TGG + chr1_3:4009985-4010004 Msa0098070:intron 20.0%
!! TATATCAATGAATCTCATAT+AGG + chr1_3:4010048-4010067 Msa0098070:intron 20.0%
!! CTTTGTATACATTAGAAAAA+TGG - chr1_3:4010411-4010430 None:intergenic 20.0%
!! AAAGTAAATAATCTCAATTG+TGG + chr1_3:4011168-4011187 Msa0098070:intron 20.0%
!!! TATACTACCTTTGTTGTTTA+TGG + chr1_3:4008265-4008284 Msa0098070:five_prime_UTR 25.0%
! AAAAACCAATTTCACCAATT+GGG - chr1_3:4008297-4008316 None:intergenic 25.0%
! TAAAAACCAATTTCACCAAT+TGG - chr1_3:4008298-4008317 None:intergenic 25.0%
!! GTACTTGTATTTGATTCTTT+TGG + chr1_3:4008397-4008416 Msa0098070:five_prime_UTR 25.0%
!!! AGATTTTTAAGTTTGTTGTG+TGG + chr1_3:4008576-4008595 Msa0098070:five_prime_UTR 25.0%
! TAAACAAGGAACAAATAACT+TGG - chr1_3:4008938-4008957 None:intergenic 25.0%
!!! AAGTGAATTTTGACTAAGTT+TGG - chr1_3:4008983-4009002 None:intergenic 25.0%
! TTCTTTCTTGAATTAAGAGA+TGG + chr1_3:4009118-4009137 Msa0098070:exon 25.0%
! TCTTTCTTGAATTAAGAGAT+GGG + chr1_3:4009119-4009138 Msa0098070:exon 25.0%
!!! TATTAGTTCTGTGTCAAATA+TGG + chr1_3:4009217-4009236 Msa0098070:CDS 25.0%
!!! GTTAGTTGTTAATTTGTTAG+AGG + chr1_3:4009840-4009859 Msa0098070:intron 25.0%
!!! GTTTAATTGTATTGTTTCTG+AGG + chr1_3:4010080-4010099 Msa0098070:intron 25.0%
! TAATCCAAGTTCATAATACA+AGG - chr1_3:4010133-4010152 None:intergenic 25.0%
! ACAAACATTACAGTATAAGA+TGG - chr1_3:4010378-4010397 None:intergenic 25.0%
! GTTAAGATGATTGTGTTAAA+TGG + chr1_3:4010538-4010557 Msa0098070:intron 25.0%
! TTCTTCTCTTATTAGATAAC+TGG + chr1_3:4010677-4010696 Msa0098070:intron 25.0%
!! TGTATACTTTAAAGATTGCA+AGG - chr1_3:4010778-4010797 None:intergenic 25.0%
!!! TTTCCTTTTTTTATTTCCCT+TGG - chr1_3:4010861-4010880 None:intergenic 25.0%
!! GCTTCAATTCCATTATATTT+TGG + chr1_3:4010970-4010989 Msa0098070:intron 25.0%
! AAGTGAAGATCTTAATCATA+CGG + chr1_3:4011106-4011125 Msa0098070:intron 25.0%
!! TTCCAAAACTTTTATGGAAT+GGG + chr1_3:4011656-4011675 Msa0098070:CDS 25.0%
!! AAATTGTCAAGTGTTGTATT+GGG - chr1_3:4011689-4011708 None:intergenic 25.0%
! AATACAACACTTGACAATTT+GGG + chr1_3:4011689-4011708 Msa0098070:CDS 25.0%
GTAGTAACCATAAACAACAA+AGG - chr1_3:4008275-4008294 None:intergenic 30.0%
!! TTTTGGTCTTTGTTTCTTCT+TGG + chr1_3:4008414-4008433 Msa0098070:five_prime_UTR 30.0%
! AATGTTGAAAGTGAAAGTGT+TGG - chr1_3:4008443-4008462 None:intergenic 30.0%
AGAGACATAGACATAGAAAA+AGG + chr1_3:4009088-4009107 Msa0098070:five_prime_UTR 30.0%
! CTAATATCCATTTCTGAAGA+TGG - chr1_3:4009203-4009222 None:intergenic 30.0%
!! ATCTTATAACCCTCTTGTTT+TGG + chr1_3:4009397-4009416 Msa0098070:CDS 30.0%
CTTGTTCAATACTCAAATCT+TGG + chr1_3:4009449-4009468 Msa0098070:CDS 30.0%
! TTATAATGCTGTGATGGAAT+TGG - chr1_3:4009587-4009606 None:intergenic 30.0%
ATGTGATTATAATGCTGTGA+TGG - chr1_3:4009593-4009612 None:intergenic 30.0%
ACAGCATTATAATCACATCA+AGG + chr1_3:4009595-4009614 Msa0098070:CDS 30.0%
GATATCAATGAATCTTATGC+AGG + chr1_3:4009796-4009815 Msa0098070:intron 30.0%
!!! GTTGGTTTGTTTTGTTTATG+AGG + chr1_3:4009943-4009962 Msa0098070:intron 30.0%
AATGCCTTGTATTATGAACT+TGG + chr1_3:4010126-4010145 Msa0098070:intron 30.0%
AAACCAAAAGTTGAACAATC+AGG + chr1_3:4010223-4010242 Msa0098070:CDS 30.0%
AACCAAAAGTTGAACAATCA+GGG + chr1_3:4010224-4010243 Msa0098070:CDS 30.0%
AACATTACAGTATAAGATGG+TGG - chr1_3:4010375-4010394 None:intergenic 30.0%
!!! ACTTCTGTTTTTGCTTTTGT+AGG + chr1_3:4010439-4010458 Msa0098070:intron 30.0%
AAAAGATTAGTGAACGAATG+AGG + chr1_3:4010471-4010490 Msa0098070:CDS 30.0%
! GTCGTAACTTGTAACTTATA+TGG + chr1_3:4010574-4010593 Msa0098070:intron 30.0%
ACACCAAGGGAAATAAAAAA+AGG + chr1_3:4010855-4010874 Msa0098070:intron 30.0%
CCAGGAAAACCAAAATATAA+TGG - chr1_3:4010982-4011001 None:intergenic 30.0%
!!! CCATTATATTTTGGTTTTCC+TGG + chr1_3:4010979-4010998 Msa0098070:intron 30.0%
TCTTTATAAGATGAATAGCC+AGG - chr1_3:4011000-4011019 None:intergenic 30.0%
AACTGAACTTTGATGTAGAA+CGG + chr1_3:4011066-4011085 Msa0098070:CDS 30.0%
AAGATCTTCACTTACATCTT+TGG - chr1_3:4011099-4011118 None:intergenic 30.0%
TAAGCATATCTTTAGACCAA+TGG - chr1_3:4011207-4011226 None:intergenic 30.0%
! ATCTTTACTCTTTTTACCTG+AGG - chr1_3:4011547-4011566 None:intergenic 30.0%
!!! CATAAAAGTTTTGGAAGTCA+TGG - chr1_3:4011652-4011671 None:intergenic 30.0%
! CATGACTTCCAAAACTTTTA+TGG + chr1_3:4011650-4011669 Msa0098070:CDS 30.0%
! CTTCCAAAACTTTTATGGAA+TGG + chr1_3:4011655-4011674 Msa0098070:CDS 30.0%
! ATCCCATTCCATAAAAGTTT+TGG - chr1_3:4011661-4011680 None:intergenic 30.0%
! CAAATTGTCAAGTGTTGTAT+TGG - chr1_3:4011690-4011709 None:intergenic 30.0%
CAATACAACACTTGACAATT+TGG + chr1_3:4011688-4011707 Msa0098070:CDS 30.0%
GTTTATGGTTACTACCCAAT+TGG + chr1_3:4008280-4008299 Msa0098070:five_prime_UTR 35.0%
TACTACCCAATTGGTGAAAT+TGG + chr1_3:4008289-4008308 Msa0098070:five_prime_UTR 35.0%
ATGCTCTTAACAAGACTGAA+AGG + chr1_3:4008715-4008734 Msa0098070:five_prime_UTR 35.0%
! TTTTCTTGCTTGTATCAGAG+AGG + chr1_3:4008745-4008764 Msa0098070:five_prime_UTR 35.0%
TTTCTTGCTTGTATCAGAGA+GGG + chr1_3:4008746-4008765 Msa0098070:five_prime_UTR 35.0%
! TTTGATCCTAGGGTTTTTGA+AGG + chr1_3:4008797-4008816 Msa0098070:five_prime_UTR 35.0%
ATATCTTGCAGGACTAAACA+AGG - chr1_3:4008952-4008971 None:intergenic 35.0%
TTCTTGAATTAAGAGATGGG+TGG + chr1_3:4009122-4009141 Msa0098070:exon 35.0%
AATGCAATGGAGTTTCAACA+TGG + chr1_3:4009152-4009171 Msa0098070:CDS 35.0%
TTCTTGTCCATCTTCAGAAA+TGG + chr1_3:4009193-4009212 Msa0098070:CDS 35.0%
! TTGAGTCAAGCTCATACTTT+TGG + chr1_3:4009329-4009348 Msa0098070:CDS 35.0%
!! TACTTTTGGAGGTTCTTCAA+TGG + chr1_3:4009343-4009362 Msa0098070:CDS 35.0%
CTTGATTCTCCAAAACAAGA+GGG - chr1_3:4009409-4009428 None:intergenic 35.0%
!!! CTCTTGTTTTGGAGAATCAA+GGG + chr1_3:4009408-4009427 Msa0098070:CDS 35.0%
GTTCAATACTCAAATCTTGG+AGG + chr1_3:4009452-4009471 Msa0098070:CDS 35.0%
AAGTGGAAGTTTCTCAGAAA+TGG + chr1_3:4009502-4009521 Msa0098070:CDS 35.0%
AACATGTAGCTAACACATCA+GGG + chr1_3:4009558-4009577 Msa0098070:CDS 35.0%
TATAATCACATCAAGGATGC+TGG + chr1_3:4009602-4009621 Msa0098070:CDS 35.0%
ATCCAAAGGGGTCAAATTAA+TGG + chr1_3:4009626-4009645 Msa0098070:CDS 35.0%
AGTGGAAGTAGAAGAAAAAG+AGG + chr1_3:4009710-4009729 Msa0098070:CDS 35.0%
TTCTACTTTCAGTCCAAACA+AGG + chr1_3:4009745-4009764 Msa0098070:CDS 35.0%
GCTTAGAAACAAACCTTGTT+TGG - chr1_3:4009761-4009780 None:intergenic 35.0%
CCTGATTCATAGAACTTCAT+CGG + chr1_3:4009899-4009918 Msa0098070:intron 35.0%
CTCGATAGGATTTGTATTGT+TGG + chr1_3:4009925-4009944 Msa0098070:intron 35.0%
! AACTTGGATTAGAATGCTGA+GGG + chr1_3:4010142-4010161 Msa0098070:intron 35.0%
! TTCCCTGATTGTTCAACTTT+TGG - chr1_3:4010229-4010248 None:intergenic 35.0%
! ATTACAGTATAAGATGGTGG+TGG - chr1_3:4010372-4010391 None:intergenic 35.0%
TCTACATCAAAGTTCAGTTC+CGG - chr1_3:4011065-4011084 None:intergenic 35.0%
AAGTGAATAGTTCACTTCCA+AGG - chr1_3:4011140-4011159 None:intergenic 35.0%
TGGAAGTGAACTATTCACTT+TGG + chr1_3:4011140-4011159 Msa0098070:intron 35.0%
AAGTGAACTATTCACTTTGG+AGG + chr1_3:4011143-4011162 Msa0098070:intron 35.0%
TGGATGAGAAATTTAGCCAT+TGG + chr1_3:4011188-4011207 Msa0098070:intron 35.0%
ATGACACCATGACTGATATT+CGG - chr1_3:4011253-4011272 None:intergenic 35.0%
TATGTACATGCAGAATGCTT+TGG + chr1_3:4011625-4011644 Msa0098070:intron 35.0%
GAGGAAACTTGGAAGTGAAA+GGG - chr1_3:4008358-4008377 None:intergenic 40.0%
TGAGGAAACTTGGAAGTGAA+AGG - chr1_3:4008359-4008378 None:intergenic 40.0%
TCAAAATCCTGCAATGACTG+AGG - chr1_3:4008377-4008396 None:intergenic 40.0%
!! TAAGTTTGTTGTGTGGACTG+TGG + chr1_3:4008583-4008602 Msa0098070:five_prime_UTR 40.0%
ACTGTGGACAAAGGAGAAAA+GGG + chr1_3:4008599-4008618 Msa0098070:five_prime_UTR 40.0%
TCTTCACCTTCAAAAACCCT+AGG - chr1_3:4008806-4008825 None:intergenic 40.0%
!! AGGGTTTTTGAAGGTGAAGA+AGG + chr1_3:4008806-4008825 Msa0098070:five_prime_UTR 40.0%
!! GTTTTTGAAGGTGAAGAAGG+TGG + chr1_3:4008809-4008828 Msa0098070:five_prime_UTR 40.0%
AACAATCCTGACTCAGCAAT+TGG - chr1_3:4009037-4009056 None:intergenic 40.0%
ATTTCATGGCTTCTTCAGCT+TGG + chr1_3:4009288-4009307 Msa0098070:CDS 40.0%
TTTCATGGCTTCTTCAGCTT+GGG + chr1_3:4009289-4009308 Msa0098070:CDS 40.0%
GCTTGACTCAATGAAACAAG+TGG - chr1_3:4009320-4009339 None:intergenic 40.0%
! AGTCAAGCTCATACTTTTGG+AGG + chr1_3:4009332-4009351 Msa0098070:CDS 40.0%
CCTTGATTCTCCAAAACAAG+AGG - chr1_3:4009410-4009429 None:intergenic 40.0%
!!! CCTCTTGTTTTGGAGAATCA+AGG + chr1_3:4009407-4009426 Msa0098070:CDS 40.0%
ATCCACAAGATTCCTTCCTA+TGG + chr1_3:4009479-4009498 Msa0098070:CDS 40.0%
TTCCATAGGAAGGAATCTTG+TGG - chr1_3:4009484-4009503 None:intergenic 40.0%
AAGATTCCTTCCTATGGAAG+TGG + chr1_3:4009485-4009504 Msa0098070:CDS 40.0%
AAACTTCCACTTCCATAGGA+AGG - chr1_3:4009494-4009513 None:intergenic 40.0%
TGAGAAACTTCCACTTCCAT+AGG - chr1_3:4009498-4009517 None:intergenic 40.0%
GGAAGTTTCTCAGAAATGGT+TGG + chr1_3:4009506-4009525 Msa0098070:CDS 40.0%
! TCAGAAATGGTTGGTTCCTT+TGG + chr1_3:4009515-4009534 Msa0098070:CDS 40.0%
GAACATGTAGCTAACACATC+AGG + chr1_3:4009557-4009576 Msa0098070:CDS 40.0%
! CACCATTAATTTGACCCCTT+TGG - chr1_3:4009631-4009650 None:intergenic 40.0%
TGGTGAACAATCTCAGATTG+AGG + chr1_3:4009646-4009665 Msa0098070:CDS 40.0%
GATTGAGGACTCTATTCATG+AGG + chr1_3:4009661-4009680 Msa0098070:CDS 40.0%
TTTCTTCTACTTCCACTACC+AGG - chr1_3:4009707-4009726 None:intergenic 40.0%
CCGATGAAGTTCTATGAATC+AGG - chr1_3:4009902-4009921 None:intergenic 40.0%
! GAACTTGGATTAGAATGCTG+AGG + chr1_3:4010141-4010160 Msa0098070:intron 40.0%
ATGGAGTGAAAGATTCTCCA+AGG + chr1_3:4010167-4010186 Msa0098070:CDS 40.0%
TCTCCAAGGAAGATTTCTGA+TGG + chr1_3:4010181-4010200 Msa0098070:CDS 40.0%
GAACCATCAGAAATCTTCCT+TGG - chr1_3:4010187-4010206 None:intergenic 40.0%
!! TCTTTAGAAGCATCTCCACT+CGG - chr1_3:4010271-4010290 None:intergenic 40.0%
ATTCATGTGAGAGCTAGAAG+AGG + chr1_3:4010298-4010317 Msa0098070:CDS 40.0%
! TTGCTTCAAGAACTTGTTCC+AGG + chr1_3:4010494-4010513 Msa0098070:CDS 40.0%
TATGCACATGCTTAACACCA+AGG + chr1_3:4010841-4010860 Msa0098070:intron 40.0%
ATGCACATGCTTAACACCAA+GGG + chr1_3:4010842-4010861 Msa0098070:intron 40.0%
CTACATCAAAGTTCAGTTCC+GGG - chr1_3:4011064-4011083 None:intergenic 40.0%
ATCATACGGATTTGACTCCT+TGG + chr1_3:4011120-4011139 Msa0098070:intron 40.0%
ATGTGTCCGAATATCAGTCA+TGG + chr1_3:4011244-4011263 Msa0098070:intron 40.0%
! GAATATCAGTCATGGTGTCA+TGG + chr1_3:4011252-4011271 Msa0098070:intron 40.0%
! TTTTTACCTGAGGCAAAGGA+GGG - chr1_3:4011537-4011556 None:intergenic 40.0%
! ACTCTTTTTACCTGAGGCAA+AGG - chr1_3:4011541-4011560 None:intergenic 40.0%
AACTTGGAAGTGAAAGGGAC+AGG - chr1_3:4008353-4008372 None:intergenic 45.0%
CTGCAATGACTGAGGAAACT+TGG - chr1_3:4008369-4008388 None:intergenic 45.0%
CAAGTTTCCTCAGTCATTGC+AGG + chr1_3:4008367-4008386 Msa0098070:five_prime_UTR 45.0%
GACTGTGGACAAAGGAGAAA+AGG + chr1_3:4008598-4008617 Msa0098070:five_prime_UTR 45.0%
TGGCTCAAGAGATATCTTGC+AGG - chr1_3:4008963-4008982 None:intergenic 45.0%
GAATTAAGAGATGGGTGGTG+AGG + chr1_3:4009127-4009146 Msa0098070:exon 45.0%
TTGGTTCCTTTGGCCAACAT+GGG + chr1_3:4009525-4009544 Msa0098070:CDS 45.0%
TCAAGGATGCTGGAATCCAA+AGG + chr1_3:4009612-4009631 Msa0098070:CDS 45.0%
CAAGGATGCTGGAATCCAAA+GGG + chr1_3:4009613-4009632 Msa0098070:CDS 45.0%
AAGGATGCTGGAATCCAAAG+GGG + chr1_3:4009614-4009633 Msa0098070:CDS 45.0%
GAGGACTCTATTCATGAGGA+TGG + chr1_3:4009665-4009684 Msa0098070:CDS 45.0%
GACTCTATTCATGAGGATGG+AGG + chr1_3:4009668-4009687 Msa0098070:CDS 45.0%
! ATTCATGAGGATGGAGGTAC+AGG + chr1_3:4009674-4009693 Msa0098070:CDS 45.0%
! AACTTCATCGGTGTCTCGAT+AGG + chr1_3:4009911-4009930 Msa0098070:intron 45.0%
GATTAGAATGCTGAGGGTGA+TGG + chr1_3:4010148-4010167 Msa0098070:intron 45.0%
GCTAAAGATAACTCTCCGAG+TGG + chr1_3:4010253-4010272 Msa0098070:CDS 45.0%
ACTTGTTCCAGGATGCAACA+AGG + chr1_3:4010505-4010524 Msa0098070:CDS 45.0%
GATGCAACAAGGTAGCGATT+TGG + chr1_3:4010516-4010535 Msa0098070:intron 45.0%
AAAGTTCAGTTCCGGGTTCA+CGG - chr1_3:4011057-4011076 None:intergenic 45.0%
TAGATTCTCCAGTCACGCTT+AGG + chr1_3:4011406-4011425 Msa0098070:intron 45.0%
TCACGCTTAGGACTTGGAAT+CGG + chr1_3:4011418-4011437 Msa0098070:CDS 45.0%
TGGAAACTTGCGTTTGGGAA+TGG - chr1_3:4011475-4011494 None:intergenic 45.0%
ATTCCCAAACGCAAGTTTCC+AGG + chr1_3:4011474-4011493 Msa0098070:CDS 45.0%
TTCCCAAACGCAAGTTTCCA+GGG + chr1_3:4011475-4011494 Msa0098070:CDS 45.0%
TACCCTGGAAACTTGCGTTT+GGG - chr1_3:4011480-4011499 None:intergenic 45.0%
TTACCCTGGAAACTTGCGTT+TGG - chr1_3:4011481-4011500 None:intergenic 45.0%
! GGGAACTGTGTTGATGAACT+AGG - chr1_3:4011517-4011536 None:intergenic 45.0%
! CTTTTTACCTGAGGCAAAGG+AGG - chr1_3:4011538-4011557 None:intergenic 45.0%
! CTTGACAATTTGGGACCCAA+TGG + chr1_3:4011698-4011717 Msa0098070:CDS 45.0%
!!! ACTTTTATAAAATAATATAA+AGG + chr1_3:4010882-4010901 Msa0098070:intron 5.0%
! GTTGTGTGGACTGTGGACAA+AGG + chr1_3:4008590-4008609 Msa0098070:five_prime_UTR 50.0%
CTTGAGCCAATTGCTGAGTC+AGG + chr1_3:4009028-4009047 Msa0098070:five_prime_UTR 50.0%
GGGTGGTGAGGAAAATGCAA+TGG + chr1_3:4009139-4009158 Msa0098070:CDS 50.0%
GCAGCAGCAGCATCATTTCA+TGG + chr1_3:4009274-4009293 Msa0098070:CDS 50.0%
! GTTGGTTCCTTTGGCCAACA+TGG + chr1_3:4009524-4009543 Msa0098070:CDS 50.0%
TTCTGCAAGACTGTGGCTGT+TGG - chr1_3:4010332-4010351 None:intergenic 50.0%
ACAGCCACAGTCTTGCAGAA+AGG + chr1_3:4010332-4010351 Msa0098070:CDS 50.0%
CAGCCACAGTCTTGCAGAAA+GGG + chr1_3:4010333-4010352 Msa0098070:CDS 50.0%
GTACCCTTTCTGCAAGACTG+TGG - chr1_3:4010339-4010358 None:intergenic 50.0%
ATCGCTACCTTGTTGCATCC+TGG - chr1_3:4010515-4010534 None:intergenic 50.0%
TGTGCAATCACTGCAGCAAC+AGG + chr1_3:4010733-4010752 Msa0098070:CDS 50.0%
ATCACTGCAGCAACAGGTTG+AGG + chr1_3:4010739-4010758 Msa0098070:CDS 50.0%
TTCCAAGTCCTAAGCGTGAC+TGG - chr1_3:4011417-4011436 None:intergenic 50.0%
! GGAATCGGTGGATTTGTTCC+TGG + chr1_3:4011433-4011452 Msa0098070:CDS 50.0%
GGATGAGAGGAGCTTATACC+AGG - chr1_3:4011454-4011473 None:intergenic 50.0%
TGCGTTTGGGAATGGATGAG+AGG - chr1_3:4011467-4011486 None:intergenic 50.0%
CGCAAGTTTCCAGGGTAACA+TGG + chr1_3:4011483-4011502 Msa0098070:CDS 50.0%
AGTTTCCAGGGTAACATGGC+TGG + chr1_3:4011487-4011506 Msa0098070:CDS 50.0%
TCCTTTGGCCAACATGGGTC+AGG + chr1_3:4009530-4009549 Msa0098070:CDS 55.0%
ACCTGACCCATGTTGGCCAA+AGG - chr1_3:4009534-4009553 None:intergenic 55.0%
TTTGGCCAACATGGGTCAGG+TGG + chr1_3:4009533-4009552 Msa0098070:CDS 55.0%
TTGGCCAACATGGGTCAGGT+GGG + chr1_3:4009534-4009553 Msa0098070:CDS 55.0%
ACAGGATCTGCACCTGGTAG+TGG + chr1_3:4009692-4009711 Msa0098070:CDS 55.0%
TGCAAGACTGTGGCTGTTGG+TGG - chr1_3:4010329-4010348 None:intergenic 55.0%
GAAACTTGCCACCGTGAACC+CGG + chr1_3:4011043-4011062 Msa0098070:CDS 55.0%
CTCCAGTCACGCTTAGGACT+TGG + chr1_3:4011412-4011431 Msa0098070:CDS 55.0%
CGCTTAGGACTTGGAATCGG+TGG + chr1_3:4011421-4011440 Msa0098070:CDS 55.0%
ACAGTTCCCTCCTTTGCCTC+AGG + chr1_3:4011528-4011547 Msa0098070:CDS 55.0%
TGGCCAACATGGGTCAGGTG+GGG + chr1_3:4009535-4009554 Msa0098070:CDS 60.0%
GTTCCCCACCTGACCCATGT+TGG - chr1_3:4009541-4009560 None:intergenic 60.0%
! GGAGGTACAGGATCTGCACC+TGG + chr1_3:4009686-4009705 Msa0098070:CDS 60.0%
GTTCAGTTCCGGGTTCACGG+TGG - chr1_3:4011054-4011073 None:intergenic 60.0%
GCATGCCAGCCATGTTACCC+TGG - chr1_3:4011495-4011514 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4008167 4011727 4008167 ID=Msa0098070;Name=Msa0098070
chr1_3 mRNA 4008167 4011727 4008167 ID=Msa0098070-mRNA-1;Parent=Msa0098070;Name=Msa0098070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=942|1|0.87|1|0.85|0.75|8|0|422
chr1_3 exon 4008167 4008472 4008167 ID=Msa0098070-mRNA-1:exon:1286;Parent=Msa0098070-mRNA-1
chr1_3 exon 4008501 4009766 4008501 ID=Msa0098070-mRNA-1:exon:1287;Parent=Msa0098070-mRNA-1
chr1_3 exon 4010154 4010354 4010154 ID=Msa0098070-mRNA-1:exon:1288;Parent=Msa0098070-mRNA-1
chr1_3 exon 4010461 4010526 4010461 ID=Msa0098070-mRNA-1:exon:1289;Parent=Msa0098070-mRNA-1
chr1_3 exon 4010692 4010760 4010692 ID=Msa0098070-mRNA-1:exon:1290;Parent=Msa0098070-mRNA-1
chr1_3 exon 4011032 4011103 4011032 ID=Msa0098070-mRNA-1:exon:1291;Parent=Msa0098070-mRNA-1
chr1_3 exon 4011409 4011549 4011409 ID=Msa0098070-mRNA-1:exon:1292;Parent=Msa0098070-mRNA-1
chr1_3 exon 4011638 4011727 4011638 ID=Msa0098070-mRNA-1:exon:1293;Parent=Msa0098070-mRNA-1
chr1_3 five_prime_UTR 4008167 4008472 4008167 ID=Msa0098070-mRNA-1:five_prime_utr;Parent=Msa0098070-mRNA-1
chr1_3 five_prime_UTR 4008501 4009136 4008501 ID=Msa0098070-mRNA-1:five_prime_utr;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4009137 4009766 4009137 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4010154 4010354 4010154 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4010461 4010526 4010461 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4010692 4010760 4010692 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4011032 4011103 4011032 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4011409 4011549 4011409 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
chr1_3 CDS 4011638 4011727 4011638 ID=Msa0098070-mRNA-1:cds;Parent=Msa0098070-mRNA-1
Gene Sequence

>Msa0098070

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTGTCAAATATGGTTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAGATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAGCTAAAGATAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACCAACAGCCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAACGGCTCTTATCCAAAGATATTCTCCAGTCACGCTTAGGACTTGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAACACTTGACAATTTGGGACCCAATGGTAAATAG
Protein sequence

>Msa0098070

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMVKTSSDVVNHHQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSTFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTTLDNLGPNGK*