AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0235290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235290 MtrunA17_Chr2g0283851 96.049 405 16 0 1 405 1 405 0.0 815
Msa0235290 MtrunA17_Chr6g0456681 49.622 397 185 10 13 401 20 409 3.55e-130 381
Msa0235290 MtrunA17_Chr6g0456691 47.700 413 178 14 14 401 21 420 3.31e-123 363
Msa0235290 MtrunA17_Chr8g0387921 42.776 353 182 9 58 400 77 419 1.18e-92 285
Msa0235290 MtrunA17_Chr8g0347321 39.276 359 189 12 56 400 96 439 1.51e-84 265
Msa0235290 MtrunA17_Chr5g0414061 40.000 355 188 12 60 402 99 440 1.27e-82 259
Msa0235290 MtrunA17_Chr6g0451321 39.084 371 200 12 45 404 106 461 4.61e-80 254
Msa0235290 MtrunA17_Chr8g0391481 37.228 368 196 14 51 401 24 373 2.13e-78 247
Msa0235290 MtrunA17_Chr7g0226991 37.568 370 196 15 50 402 53 404 8.66e-78 246
Msa0235290 MtrunA17_Chr3g0140371 36.188 362 192 12 59 402 22 362 8.44e-77 242
Msa0235290 MtrunA17_Chr5g0414091 37.640 356 197 12 60 402 90 433 6.20e-76 242
Msa0235290 MtrunA17_Chr5g0414041 39.410 373 200 14 43 402 76 435 2.15e-74 238
Msa0235290 MtrunA17_Chr7g0221281 50.000 242 112 7 168 404 3 240 2.63e-73 229
Msa0235290 MtrunA17_Chr5g0414051 34.644 407 226 18 15 402 37 422 7.94e-73 234
Msa0235290 MtrunA17_Chr1g0188191 35.165 364 204 10 56 402 235 583 4.53e-66 221
Msa0235290 MtrunA17_Chr6g0476041 34.840 376 189 16 56 402 168 516 1.46e-64 215
Msa0235290 MtrunA17_Chr7g0259711 31.768 362 209 14 56 400 92 432 1.24e-44 160
Msa0235290 MtrunA17_Chr4g0071391 31.092 357 206 14 56 396 110 442 4.55e-44 159
Msa0235290 MtrunA17_Chr1g0175671 29.700 367 200 12 56 396 171 505 1.12e-43 159
Msa0235290 MtrunA17_Chr7g0269991 32.222 360 208 12 56 404 138 472 2.02e-43 157
Msa0235290 MtrunA17_Chr7g0221271 50.327 153 66 4 35 186 62 205 4.02e-43 149
Msa0235290 MtrunA17_Chr2g0287901 31.373 357 208 12 56 396 98 433 2.79e-41 151
Msa0235290 MtrunA17_Chr7g0258851 29.700 367 200 14 56 396 249 583 1.40e-40 152
Msa0235290 MtrunA17_Chr3g0105301 32.051 390 188 19 32 396 35 372 2.09e-40 147
Msa0235290 MtrunA17_Chr8g0368461 31.300 377 208 16 56 404 179 532 3.77e-40 150
Msa0235290 MtrunA17_Chr4g0068111 28.371 356 224 12 53 396 113 449 6.99e-40 148
Msa0235290 MtrunA17_Chr5g0413271 29.810 369 205 12 56 404 146 480 1.19e-39 147
Msa0235290 MtrunA17_Chr3g0113671 31.267 371 201 15 56 400 107 449 5.31e-39 145
Msa0235290 MtrunA17_Chr8g0360521 29.155 367 212 16 50 396 67 405 8.68e-39 144
Msa0235290 MtrunA17_Chr4g0070341 28.852 357 224 12 56 400 133 471 1.05e-38 144
Msa0235290 MtrunA17_Chr4g0006991 30.319 376 206 17 51 400 82 427 1.62e-38 143
Msa0235290 MtrunA17_Chr3g0114101 29.584 409 241 16 9 396 44 426 1.93e-38 143
Msa0235290 MtrunA17_Chr2g0283581 30.570 386 222 16 20 396 6 354 3.42e-38 141
Msa0235290 MtrunA17_Chr7g0221291 63.736 91 32 1 56 145 80 170 9.10e-37 132
Msa0235290 MtrunA17_Chr5g0430371 30.585 376 196 18 51 396 55 395 2.23e-36 137
Msa0235290 MtrunA17_Chr3g0091031 30.362 359 191 15 53 396 30 344 1.26e-35 134
Msa0235290 MtrunA17_Chr8g0384151 29.178 353 215 12 56 400 91 416 1.67e-35 135
Msa0235290 MtrunA17_Chr1g0213281 28.649 370 217 15 56 402 176 521 3.06e-35 136
Msa0235290 MtrunA17_Chr3g0085081 30.084 359 192 13 53 396 30 344 4.96e-35 132
Msa0235290 MtrunA17_Chr7g0242701 29.600 375 200 16 56 400 87 427 7.46e-35 133
Msa0235290 MtrunA17_Chr7g0243301 27.404 416 249 19 9 396 15 405 1.65e-34 132
Msa0235290 MtrunA17_Chr4g0005481 28.307 378 211 16 49 400 103 446 1.88e-34 132
Msa0235290 MtrunA17_Chr5g0414081 34.314 204 115 9 214 402 2 201 4.41e-34 125
Msa0235290 MtrunA17_Chr5g0437601 28.455 369 217 16 50 397 79 421 5.36e-34 131
Msa0235290 MtrunA17_Chr8g0384421 27.095 358 221 11 60 400 138 472 7.38e-34 131
Msa0235290 MtrunA17_Chr4g0005491 26.961 408 262 14 14 402 20 410 8.03e-33 127
Msa0235290 MtrunA17_Chr2g0314801 28.933 356 206 15 56 400 34 353 1.33e-32 125
Msa0235290 MtrunA17_Chr3g0097891 28.351 388 222 17 21 396 3 346 1.50e-32 125
Msa0235290 MtrunA17_Chr1g0171171 29.282 362 193 15 59 400 57 375 1.51e-32 126
Msa0235290 MtrunA17_Chr1g0210771 30.471 361 183 16 59 396 63 378 1.66e-32 126
Msa0235290 MtrunA17_Chr3g0085071 27.606 355 209 11 56 400 47 363 4.48e-32 124
Msa0235290 MtrunA17_Chr2g0325481 28.940 349 203 13 56 396 51 362 7.09e-31 121
Msa0235290 MtrunA17_Chr5g0437291 28.841 371 216 14 52 398 162 508 1.35e-30 122
Msa0235290 MtrunA17_Chr4g0045941 29.363 361 206 16 43 393 22 343 1.95e-29 117
Msa0235290 MtrunA17_Chr4g0045951 27.411 394 235 15 10 393 3 355 3.62e-29 116
Msa0235290 MtrunA17_Chr6g0455901 27.174 368 208 14 60 397 76 413 4.54e-29 117
Msa0235290 MtrunA17_Chr4g0041011 26.823 384 244 10 20 396 6 359 1.95e-28 114
Msa0235290 MtrunA17_Chr2g0314791 29.204 339 184 16 69 396 48 341 1.87e-26 108
Msa0235290 MtrunA17_Chr4g0049421 26.685 356 238 10 56 400 49 392 4.14e-26 108
Msa0235290 MtrunA17_Chr3g0126021 26.431 367 228 13 50 402 124 462 5.66e-26 109
Msa0235290 MtrunA17_Chr5g0413851 28.534 382 219 19 26 396 17 355 1.86e-25 106
Msa0235290 MtrunA17_Chr1g0209921 38.667 150 78 4 27 164 13 160 7.43e-23 97.1
Msa0235290 MtrunA17_Chr1g0178081 26.877 253 165 7 16 255 11 256 9.70e-21 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235290 AT5G15890.1 49.479 384 163 12 32 401 157 523 1.28e-120 360
Msa0235290 AT5G15900.1 45.455 418 194 12 7 402 6 411 2.19e-117 348
Msa0235290 AT5G15900.2 45.455 418 194 12 7 402 25 430 3.56e-117 348
Msa0235290 AT3G02440.2 45.682 359 173 10 56 405 136 481 1.42e-104 318
Msa0235290 AT3G02440.1 45.682 359 173 10 56 405 128 473 1.86e-104 317
Msa0235290 AT1G01430.1 39.386 391 201 14 32 400 71 447 3.63e-89 277
Msa0235290 AT4G23790.1 39.200 375 195 13 43 400 69 427 1.03e-87 273
Msa0235290 AT4G11090.1 36.203 395 216 12 30 400 43 425 4.98e-86 268
Msa0235290 AT4G01080.1 40.678 354 180 10 56 397 92 427 6.47e-85 266
Msa0235290 AT1G70230.1 37.293 362 193 14 51 402 76 413 8.80e-79 249
Msa0235290 AT3G28150.1 37.396 361 206 13 50 403 66 413 1.10e-75 241
Msa0235290 AT5G51640.1 35.079 382 202 10 46 402 130 490 1.12e-66 220
Msa0235290 AT4G25360.1 35.263 380 201 11 47 402 168 526 1.59e-66 221
Msa0235290 AT4G25360.2 35.263 380 201 11 47 402 168 526 1.59e-66 221
Msa0235290 AT5G49340.1 32.222 360 207 11 53 396 99 437 8.14e-49 172
Msa0235290 AT5G20590.1 31.302 361 201 15 56 396 142 475 3.40e-44 160
Msa0235290 AT3G12060.1 30.518 367 202 14 53 396 195 531 1.00e-42 157
Msa0235290 AT1G60790.1 31.452 372 208 15 56 405 191 537 3.18e-42 156
Msa0235290 AT3G06080.2 32.418 364 197 16 56 396 104 441 4.49e-41 151
Msa0235290 AT3G11030.1 29.781 366 214 14 52 397 103 445 7.95e-40 147
Msa0235290 AT3G11570.1 30.857 350 201 11 70 403 98 422 8.42e-40 147
Msa0235290 AT3G62390.1 30.114 352 209 13 60 399 143 469 1.96e-39 147
Msa0235290 AT5G64020.1 29.301 372 215 12 56 400 58 408 2.04e-39 145
Msa0235290 AT5G19160.1 30.000 360 214 10 56 396 100 440 3.57e-39 146
Msa0235290 AT2G40160.1 29.700 367 222 13 56 403 78 427 5.25e-39 145
Msa0235290 AT2G40160.2 29.091 385 237 13 37 402 59 426 1.00e-38 144
Msa0235290 AT5G06700.1 29.477 363 204 14 57 396 257 590 1.52e-38 146
Msa0235290 AT1G48880.1 30.163 368 212 14 47 402 107 441 2.64e-38 143
Msa0235290 AT1G73140.1 29.067 375 213 17 50 401 63 407 2.83e-38 142
Msa0235290 AT5G58600.1 29.650 371 204 16 53 400 64 400 4.86e-37 139
Msa0235290 AT5G06230.2 28.571 343 218 9 70 403 43 367 5.03e-37 138
Msa0235290 AT5G64470.3 28.302 371 228 12 46 400 46 394 7.72e-37 139
Msa0235290 AT2G14530.1 28.338 367 210 13 60 400 67 406 8.03e-37 139
Msa0235290 AT5G06230.1 28.863 343 217 9 70 403 84 408 1.11e-36 138
Msa0235290 AT2G40150.1 30.548 383 225 14 38 398 54 417 5.24e-36 137
Msa0235290 AT2G34070.1 30.398 352 206 13 51 396 61 379 8.03e-36 135
Msa0235290 AT2G30900.1 28.756 386 233 14 21 396 8 361 1.59e-35 134
Msa0235290 AT1G29050.1 28.080 349 207 11 56 396 62 374 5.23e-35 133
Msa0235290 AT5G64470.2 27.926 376 229 12 46 400 46 400 7.11e-35 133
Msa0235290 AT2G30010.1 29.793 386 204 19 40 396 45 392 1.09e-34 132
Msa0235290 AT5G20680.6 27.807 374 225 14 46 400 110 457 1.15e-34 134
Msa0235290 AT2G30010.2 29.793 386 204 19 40 396 88 435 1.43e-34 133
Msa0235290 AT5G20680.2 27.807 374 225 14 46 400 186 533 1.82e-34 134
Msa0235290 AT5G20680.4 27.807 374 225 14 46 400 204 551 2.16e-34 134
Msa0235290 AT5G20680.1 27.807 374 225 14 46 400 204 551 2.16e-34 134
Msa0235290 AT5G20680.3 27.807 374 225 14 46 400 204 551 2.16e-34 134
Msa0235290 AT5G20680.5 27.807 374 225 14 46 400 204 551 2.16e-34 134
Msa0235290 AT5G01620.2 28.534 382 217 17 44 400 99 449 6.04e-34 131
Msa0235290 AT5G01620.1 28.534 382 217 17 44 400 99 449 6.04e-34 131
Msa0235290 AT3G55990.1 29.539 369 213 15 52 398 137 480 7.90e-34 132
Msa0235290 AT5G01360.2 28.571 371 214 15 51 397 32 375 8.01e-34 130
Msa0235290 AT5G01620.3 28.534 382 217 16 44 400 107 457 1.07e-33 131
Msa0235290 AT5G01360.1 28.302 371 215 15 51 397 88 431 1.16e-33 130
Msa0235290 AT2G40320.1 27.273 385 228 16 36 397 64 419 2.00e-33 130
Msa0235290 AT3G14850.2 29.888 358 201 14 56 400 35 355 7.92e-33 127
Msa0235290 AT2G42570.1 28.841 371 219 13 34 396 27 360 2.79e-31 122
Msa0235290 AT2G31110.2 27.945 365 208 14 47 398 37 359 1.83e-30 120
Msa0235290 AT2G38320.1 26.536 358 229 11 56 396 60 400 5.92e-30 120
Msa0235290 AT5G64470.4 28.214 280 182 7 46 315 46 316 4.80e-28 112
Msa0235290 AT5G64470.1 28.470 281 181 8 46 315 46 317 8.60e-28 112
Msa0235290 AT2G37720.1 25.654 382 226 13 45 400 133 482 1.02e-27 114
Msa0235290 AT3G54260.1 27.374 358 206 14 59 400 55 374 1.90e-27 112
Msa0235290 AT5G20590.2 31.621 253 142 10 56 293 142 378 2.44e-27 112
Msa0235290 AT5G19160.2 33.203 256 146 9 50 292 92 335 1.36e-26 109
Msa0235290 AT5G58600.2 37.297 185 93 8 53 232 64 230 1.40e-26 108
Msa0235290 AT2G38320.2 25.449 334 217 9 78 396 1 317 2.96e-26 108
Msa0235290 AT1G78710.1 27.635 351 207 13 56 396 39 352 1.90e-25 106
Msa0235290 AT3G62390.2 29.749 279 170 10 60 325 143 408 4.36e-25 106
Msa0235290 AT2G40160.3 29.658 263 170 7 37 293 59 312 6.58e-25 104
Msa0235290 AT3G06080.1 33.202 253 138 11 56 293 104 340 8.24e-25 104
Msa0235290 AT2G30900.2 35.673 171 98 6 21 186 8 171 5.13e-24 100
Msa0235290 AT5G06230.3 28.085 235 151 6 70 296 84 308 1.36e-20 92.0
Msa0235290 AT2G31110.3 34.752 141 85 2 47 186 37 171 1.19e-19 88.6
Msa0235290 AT1G78710.2 32.331 133 80 4 56 186 32 156 4.20e-14 72.8
Msa0235290 AT3G14850.1 26.644 289 163 13 125 401 2 253 1.16e-13 70.9
Msa0235290 AT2G34070.2 26.354 277 166 12 125 396 2 245 1.20e-13 70.9

Find 76 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGTAATGAACATAAA+TGG 0.236226 2_2:-8113560 Msa0235290:CDS
GATGGACATCCTAACAAATA+TGG 0.236825 2_2:-8113402 Msa0235290:CDS
GGACATGTTTGATTGTAATA+AGG 0.269234 2_2:+8117285 None:intergenic
CCATTCACATTCTACGAAAA+TGG 0.269331 2_2:-8113780 Msa0235290:CDS
CGACTTGTCCAAGCTGTATC+TGG 0.279200 2_2:+8113855 None:intergenic
AAATACAGTCAAACCTTAAA+AGG 0.290490 2_2:+8113101 None:intergenic
TCGCCATTCTCGAAATGATT+TGG 0.295458 2_2:+8113618 None:intergenic
GGGAAGAATGGTTCACGTTT+TGG 0.297933 2_2:-8113462 Msa0235290:CDS
CTGAATTAGCAATTCTTCAT+AGG 0.322750 2_2:+8113170 None:intergenic
GTTGTAGATGTAAGATTTAG+AGG 0.331571 2_2:+8113920 None:intergenic
TACGAAAATGGTACAATTGT+TGG 0.334836 2_2:-8113768 Msa0235290:CDS
AGCTGTAACAACTTGTTCTT+AGG 0.334924 2_2:-8117333 Msa0235290:CDS
AGAATTGCTAATTCAGTATT+AGG 0.338300 2_2:-8113163 Msa0235290:three_prime_UTR
TTCATTTGTATTATGTGATC+TGG 0.362050 2_2:+8113140 None:intergenic
AAACAGAACTGTCTTATTCA+TGG 0.380463 2_2:-8117249 Msa0235290:CDS
TCTCTATATGATCAGGAGAA+TGG 0.388822 2_2:-8113295 Msa0235290:CDS
ACCACCATTTGAAATATGTT+AGG 0.397436 2_2:+8114000 None:intergenic
GGGAACAAGAAAATCCGTTT+AGG 0.398457 2_2:+8117456 None:intergenic
CTCTATATGATCAGGAGAAT+GGG 0.410649 2_2:-8113294 Msa0235290:CDS
AACAAATATGGGCATGTGTC+TGG 0.414694 2_2:-8113390 Msa0235290:CDS
TGTATAATCTCTAGACCATA+TGG 0.419538 2_2:+8113528 None:intergenic
GGTTCTACAATAGTTGTTGT+TGG 0.420927 2_2:+8117357 None:intergenic
TCAATAGAACTCAACTATTA+CGG 0.422237 2_2:-8113726 Msa0235290:CDS
CATTTATGTTCATTACTGAA+TGG 0.429070 2_2:+8113561 None:intergenic
GACACATGCCCATATTTGTT+AGG 0.433571 2_2:+8113393 None:intergenic
GCCAACCCTTTGAACAGATT+AGG 0.439293 2_2:+8113660 None:intergenic
AGTGCTGCAAAGAACAATAC+AGG 0.440892 2_2:-8113483 Msa0235290:CDS
TCTCCAAATCATTTCGAGAA+TGG 0.442620 2_2:-8113621 Msa0235290:CDS
GCATTAATGATTGTGTTCAT+TGG 0.443179 2_2:-8113356 Msa0235290:CDS
ATTCAGTAATGAACATAAAT+GGG 0.446790 2_2:-8113559 Msa0235290:CDS
ACAGCTTGGACAAGTCGAAT+TGG 0.448449 2_2:-8113849 Msa0235290:CDS
ATCTCATTAATAGTGTCAAC+AGG 0.452614 2_2:+8113321 None:intergenic
GATTATACATCAAATACAAT+TGG 0.453202 2_2:-8113514 Msa0235290:CDS
AAAGGAAGTTCACAATCATC+AGG 0.459292 2_2:+8117189 None:intergenic
TGTGTTCATTGGTGTATGCC+AGG 0.462264 2_2:-8113345 Msa0235290:CDS
AAGACCTAACATATTTCAAA+TGG 0.463983 2_2:-8114004 Msa0235290:CDS
ATGAATCCTAATCTGTTCAA+AGG 0.468604 2_2:-8113666 Msa0235290:CDS
GATTGTTAAGGGAAAGTCAA+TGG 0.479240 2_2:-8117142 Msa0235290:CDS
TCCTAATCTGTTCAAAGGGT+TGG 0.479269 2_2:-8113661 Msa0235290:CDS
CACTTAAGAAAATCACTGTC+TGG 0.480060 2_2:+8117222 None:intergenic
ATGGACATCCTAACAAATAT+GGG 0.489535 2_2:-8113401 Msa0235290:CDS
TTAATAGTGTCAACAGGCCC+TGG 0.494028 2_2:+8113327 None:intergenic
AAATGGGAGGTGCATCCATA+TGG 0.498779 2_2:-8113543 Msa0235290:CDS
TCATCTAGATAAAGACTCTC+GGG 0.508720 2_2:+8113879 None:intergenic
ACCTAACATATTTCAAATGG+TGG 0.511538 2_2:-8114001 Msa0235290:CDS
TGAATCCTAATCTGTTCAAA+GGG 0.511700 2_2:-8113665 Msa0235290:CDS
AAGAACAATACAGGGAAGAA+TGG 0.522710 2_2:-8113474 Msa0235290:CDS
TTCATCTAGATAAAGACTCT+CGG 0.524467 2_2:+8113878 None:intergenic
AAAGACAATTAATAATGCAT+TGG 0.525484 2_2:+8117603 None:intergenic
ACAACTTGTTCTTAGGAACA+TGG 0.533263 2_2:-8117326 Msa0235290:CDS
TATTTGTTAGGATGTCCATC+AGG 0.533554 2_2:+8113405 None:intergenic
CTCTATTGGGAGAAATCAGA+TGG 0.539667 2_2:-8117106 Msa0235290:CDS
GGCGAATGGAACAATGGTGG+AGG 0.551143 2_2:-8113600 Msa0235290:CDS
CAACTTGTTCTTAGGAACAT+GGG 0.555004 2_2:-8117325 Msa0235290:CDS
TTAAACAATGTATTGAACAA+AGG 0.560079 2_2:-8113206 Msa0235290:three_prime_UTR
TTTCGTAGAATGTGAATGGT+CGG 0.563386 2_2:+8113784 None:intergenic
CTTTCAGGTTGCTCGTGCTG+AGG 0.566325 2_2:-8114057 Msa0235290:intron
TAGATGAACCAGATACAGCT+TGG 0.571908 2_2:-8113863 Msa0235290:CDS
GTGTTCATTGGTGTATGCCA+GGG 0.577510 2_2:-8113344 Msa0235290:CDS
ATCATTTCGAGAATGGCGAA+TGG 0.594806 2_2:-8113614 Msa0235290:CDS
TGATTGAAGTGAATGAGAAG+AGG 0.595501 2_2:+8117402 None:intergenic
AATGTATTGAACAAAGGTGT+TGG 0.601069 2_2:-8113200 Msa0235290:three_prime_UTR
TTATTATTATCATAGAGTCA+TGG 0.608810 2_2:-8117508 Msa0235290:exon
AAGAACAAGTTGTTACAGCT+AGG 0.609399 2_2:+8117336 None:intergenic
AACTGAGTTGCATCAAACAA+AGG 0.611259 2_2:+8117171 None:intergenic
GCAATGTTGATGAGACCTGA+TGG 0.619929 2_2:-8113420 Msa0235290:CDS
AGGGGACCATAGCATTGCAA+TGG 0.626452 2_2:+8113956 None:intergenic
CAAGAATGAGTACTGTGAGT+GGG 0.638314 2_2:+8117436 None:intergenic
GAGAATGGCGAATGGAACAA+TGG 0.644400 2_2:-8113606 Msa0235290:CDS
ACAAGAATGAGTACTGTGAG+TGG 0.651564 2_2:+8117435 None:intergenic
GCATTGGAAACTGCTCTATG+TGG 0.653517 2_2:+8117619 None:intergenic
GCGAATGGAACAATGGTGGA+GGG 0.654886 2_2:-8113599 Msa0235290:CDS
TAGAGTCATGGAGTCATGTG+AGG 0.667840 2_2:-8117496 Msa0235290:exon
AATGGCGAATGGAACAATGG+TGG 0.671698 2_2:-8113603 Msa0235290:CDS
CAGTAATGAACATAAATGGG+AGG 0.675573 2_2:-8113556 Msa0235290:CDS
GTGCTGCAAAGAACAATACA+GGG 0.679216 2_2:-8113482 Msa0235290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAGCAAAAAATAT+AGG + chr2_2:8113721-8113740 None:intergenic 10.0%
!!! AAAATTTGCTTATTTATTTT+TGG + chr2_2:8114010-8114029 None:intergenic 10.0%
!! GTTTATTATGTTTAATTAAA+AGG - chr2_2:8114124-8114143 Msa0235290:intron 10.0%
!!! TTTTTTTTTTTTTTTGTAGA+TGG - chr2_2:8114554-8114573 Msa0235290:intron 10.0%
!! AAAATTTAGAAGTAATAAAT+AGG - chr2_2:8115426-8115445 Msa0235290:intron 10.0%
!!! TTTTGTACTAAATATATTTA+AGG - chr2_2:8115960-8115979 Msa0235290:intron 10.0%
!! TTACTTATATAAAACATTAA+AGG + chr2_2:8116002-8116021 None:intergenic 10.0%
!! TTAGTCAAAAACAAATAAAA+GGG + chr2_2:8113169-8113188 None:intergenic 15.0%
!! ATTAGTCAAAAACAAATAAA+AGG + chr2_2:8113170-8113189 None:intergenic 15.0%
!!! TTGCTTTAATTTTTGTTTAA+AGG - chr2_2:8113728-8113747 Msa0235290:CDS 15.0%
!!! TAAAAAAAATTCTGAAATAG+AGG + chr2_2:8113862-8113881 None:intergenic 15.0%
!! AAATTATCAAAATTATGAAC+TGG - chr2_2:8113882-8113901 Msa0235290:CDS 15.0%
!!! TTTTCCATTTCAAAAAAAAA+TGG + chr2_2:8113908-8113927 None:intergenic 15.0%
!!! ATTTAAGTCAAACTTTTTTT+GGG - chr2_2:8113952-8113971 Msa0235290:CDS 15.0%
!! AAAAAAACATTATCTCAATA+AGG + chr2_2:8114540-8114559 None:intergenic 15.0%
!! ATATATAAGTTACAATTACT+TGG + chr2_2:8114838-8114857 None:intergenic 15.0%
!! TTCATAAAACAAATAGAAAT+TGG - chr2_2:8114867-8114886 Msa0235290:intron 15.0%
!! ATAAAAATGCATTGTAAATA+TGG - chr2_2:8114980-8114999 Msa0235290:intron 15.0%
!!! AAGTATATATACAACATTTT+GGG + chr2_2:8115830-8115849 None:intergenic 15.0%
!!! AAAGTATATATACAACATTT+TGG + chr2_2:8115831-8115850 None:intergenic 15.0%
!!! TTTTGTACTCAATATATTTA+AGG - chr2_2:8115874-8115893 Msa0235290:intron 15.0%
!! GTATAAGTAAAAATAATTAG+AGG - chr2_2:8115926-8115945 Msa0235290:intron 15.0%
!! TTCAAATTAAGATATGTTTA+AGG - chr2_2:8116187-8116206 Msa0235290:intron 15.0%
!!! GCTTAAATTAAGTTTTATTT+AGG + chr2_2:8116662-8116681 None:intergenic 15.0%
!!! AAATTTGTATACTTTTGTTT+TGG - chr2_2:8117502-8117521 Msa0235290:exon 15.0%
!! AAAGACAATTAATAATGCAT+TGG + chr2_2:8113144-8113163 None:intergenic 20.0%
!! TTATTATTATCATAGAGTCA+TGG - chr2_2:8113236-8113255 Msa0235290:three_prime_UTR 20.0%
!!! TAATAAGGTTGTTTTAGATA+AGG + chr2_2:8113447-8113466 None:intergenic 20.0%
!!! TTCTGTTTTTCAGTTATAAA+AGG + chr2_2:8113483-8113502 None:intergenic 20.0%
!!! CATTTAAGTCAAACTTTTTT+TGG - chr2_2:8113951-8113970 Msa0235290:CDS 20.0%
!!! AAGAAAAAACACTTTTCAAA+TGG - chr2_2:8114075-8114094 Msa0235290:intron 20.0%
!!! AATTTTTCATCTAACACATT+TGG + chr2_2:8114171-8114190 None:intergenic 20.0%
!! ACACATTGACAAAAAAATAT+TGG - chr2_2:8114195-8114214 Msa0235290:intron 20.0%
!!! ACAAAAAAATATTGGCTTTT+AGG - chr2_2:8114203-8114222 Msa0235290:intron 20.0%
!!! TTTTTGTTTGGAAATTTGAA+AGG - chr2_2:8114309-8114328 Msa0235290:intron 20.0%
!!! AACGGTTGATATTATTTAAT+TGG - chr2_2:8114418-8114437 Msa0235290:intron 20.0%
!!! AAAATTTGTACGTTTTTGTT+TGG + chr2_2:8114718-8114737 None:intergenic 20.0%
!!! TTTTAACTTTGTTGTAATGA+AGG - chr2_2:8114734-8114753 Msa0235290:intron 20.0%
!!! TTTAACTTTGTTGTAATGAA+GGG - chr2_2:8114735-8114754 Msa0235290:intron 20.0%
!! TCTATTCACAAAAAATTACT+TGG + chr2_2:8114955-8114974 None:intergenic 20.0%
!! ATTGTAAATATGGAAGAAAA+AGG - chr2_2:8114990-8115009 Msa0235290:intron 20.0%
!! AAATAAACATGCGTTTATTT+AGG + chr2_2:8115571-8115590 None:intergenic 20.0%
!! CAACAAAGAAAATCTATATT+GGG + chr2_2:8115723-8115742 None:intergenic 20.0%
!! ACAACAAAGAAAATCTATAT+TGG + chr2_2:8115724-8115743 None:intergenic 20.0%
!!! ATATATACTTTTCTAACTAG+AGG - chr2_2:8115840-8115859 Msa0235290:intron 20.0%
!! AAATTAAGATATGTTTAAGG+TGG - chr2_2:8116190-8116209 Msa0235290:intron 20.0%
!! TTTCTTTCACTATCATAATA+TGG - chr2_2:8116598-8116617 Msa0235290:intron 20.0%
!! ATTCAGTAATGAACATAAAT+GGG - chr2_2:8117185-8117204 Msa0235290:CDS 20.0%
!! GATTATACATCAAATACAAT+TGG - chr2_2:8117230-8117249 Msa0235290:CDS 20.0%
!! TTAAACAATGTATTGAACAA+AGG - chr2_2:8117538-8117557 Msa0235290:five_prime_UTR 20.0%
!!! AATGATTAATTCTCCTTTTA+AGG - chr2_2:8117630-8117649 Msa0235290:five_prime_UTR 20.0%
!!! TCAGTTTTTCAAGATTGTTA+AGG - chr2_2:8113590-8113609 Msa0235290:CDS 25.0%
!!! CAGTTTTTCAAGATTGTTAA+GGG - chr2_2:8113591-8113610 Msa0235290:CDS 25.0%
! AAACAACCAAACTAATATTG+GGG + chr2_2:8113780-8113799 None:intergenic 25.0%
! CAAACAACCAAACTAATATT+GGG + chr2_2:8113781-8113800 None:intergenic 25.0%
! TCAAACAACCAAACTAATAT+TGG + chr2_2:8113782-8113801 None:intergenic 25.0%
!!! GTTTGGTTGTTTGAAATTTT+TGG - chr2_2:8113788-8113807 Msa0235290:CDS 25.0%
! GAAGAAAACAAATATAAGGT+GGG + chr2_2:8114279-8114298 None:intergenic 25.0%
! ATGCGAAGAAAACAAATATA+AGG + chr2_2:8114283-8114302 None:intergenic 25.0%
! AACCGTTAATTTAAACTAGA+TGG + chr2_2:8114405-8114424 None:intergenic 25.0%
! GACTAATTGTGTAATATTCA+TGG - chr2_2:8114444-8114463 Msa0235290:intron 25.0%
! TTGAAAAAAGTAAGGAGAAA+AGG + chr2_2:8114675-8114694 None:intergenic 25.0%
!!! TTTTGTTTGGAAGTTTAGTA+GGG + chr2_2:8114705-8114724 None:intergenic 25.0%
!!! TTTTTGTTTGGAAGTTTAGT+AGG + chr2_2:8114706-8114725 None:intergenic 25.0%
!! TTAACTTTGTTGTAATGAAG+GGG - chr2_2:8114736-8114755 Msa0235290:intron 25.0%
! CCTATTATAGGAAGATAATT+TGG + chr2_2:8115154-8115173 None:intergenic 25.0%
! CCAAATTATCTTCCTATAAT+AGG - chr2_2:8115151-8115170 Msa0235290:intron 25.0%
! CCTATTATAGGAAGATAATT+TGG + chr2_2:8115154-8115173 None:intergenic 25.0%
! CCAAATTATCTTCCTATAAT+AGG - chr2_2:8115151-8115170 Msa0235290:intron 25.0%
! AAATAGGAACCATTAAATCA+AGG - chr2_2:8115442-8115461 Msa0235290:intron 25.0%
! TGTTATTGGACTAAACAATT+GGG + chr2_2:8115499-8115518 None:intergenic 25.0%
! TTACTTATACAAGAAAGTAG+AGG + chr2_2:8115916-8115935 None:intergenic 25.0%
!! AACCTCATTTGTTAAATGTT+CGG - chr2_2:8116045-8116064 Msa0235290:intron 25.0%
!! TTAGGTTTAAAATGAAGCAT+TGG - chr2_2:8116216-8116235 Msa0235290:intron 25.0%
!!! CATATATTACTGTTTTGAAC+AGG + chr2_2:8116494-8116513 None:intergenic 25.0%
! AAAGAGATACTTGAAAGAAT+TGG + chr2_2:8116553-8116572 None:intergenic 25.0%
! AAGACCTAACATATTTCAAA+TGG - chr2_2:8116740-8116759 Msa0235290:intron 25.0%
!! TAGAGGATTTTACTAGAAAA+GGG + chr2_2:8116810-8116829 None:intergenic 25.0%
!! TTAGAGGATTTTACTAGAAA+AGG + chr2_2:8116811-8116830 None:intergenic 25.0%
! TCAATAGAACTCAACTATTA+CGG - chr2_2:8117018-8117037 Msa0235290:intron 25.0%
! CATTTATGTTCATTACTGAA+TGG + chr2_2:8117186-8117205 None:intergenic 25.0%
! CATTCAGTAATGAACATAAA+TGG - chr2_2:8117184-8117203 Msa0235290:CDS 25.0%
!! AGATTTTTCTCTATATGATC+AGG - chr2_2:8117442-8117461 Msa0235290:CDS 25.0%
! AGAATTGCTAATTCAGTATT+AGG - chr2_2:8117581-8117600 Msa0235290:five_prime_UTR 25.0%
! TTCATTTGTATTATGTGATC+TGG + chr2_2:8117607-8117626 None:intergenic 25.0%
! AAATACAGTCAAACCTTAAA+AGG + chr2_2:8117646-8117665 None:intergenic 25.0%
!!! CTGTATTTCTGAGTTTTTTT+TGG - chr2_2:8117658-8117677 Msa0235290:five_prime_UTR 25.0%
! CAGAGATTTTCAAACCTAAA+CGG - chr2_2:8113274-8113293 Msa0235290:exon 30.0%
GGACATGTTTGATTGTAATA+AGG + chr2_2:8113462-8113481 None:intergenic 30.0%
! AAACAGAACTGTCTTATTCA+TGG - chr2_2:8113495-8113514 Msa0235290:CDS 30.0%
!!! TTTTTGGCTAAATGCAGTAT+TGG - chr2_2:8113804-8113823 Msa0235290:CDS 30.0%
!!! CTGGCCATTTTTTTTTGAAA+TGG - chr2_2:8113901-8113920 Msa0235290:CDS 30.0%
TTTGGGCAAATTTGTCATAT+AGG - chr2_2:8113969-8113988 Msa0235290:CDS 30.0%
AATAGTACTAGAAGAAATCC+AGG - chr2_2:8114252-8114271 Msa0235290:intron 30.0%
CGAAGAAAACAAATATAAGG+TGG + chr2_2:8114280-8114299 None:intergenic 30.0%
!! TCGCATCTGAAATTTTTGTT+TGG - chr2_2:8114297-8114316 Msa0235290:intron 30.0%
TGTTTGGAAATTTGAAAGGA+AGG - chr2_2:8114313-8114332 Msa0235290:intron 30.0%
GTTTGGAAATTTGAAAGGAA+GGG - chr2_2:8114314-8114333 Msa0235290:intron 30.0%
TTTGGAAATTTGAAAGGAAG+GGG - chr2_2:8114315-8114334 Msa0235290:intron 30.0%
! GGCCATCTAGTTTAAATTAA+CGG - chr2_2:8114400-8114419 Msa0235290:intron 30.0%
!! CTAGATTTGTTGTTGATTTG+AGG + chr2_2:8114475-8114494 None:intergenic 30.0%
CTCAAATCAACAACAAATCT+AGG - chr2_2:8114473-8114492 Msa0235290:intron 30.0%
!! GAGAGCTTTTGAAAAAAGTA+AGG + chr2_2:8114683-8114702 None:intergenic 30.0%
TTCACAAAAAATTACTTGGC+AGG + chr2_2:8114951-8114970 None:intergenic 30.0%
ATGCATACTACTCCTATTAT+AGG + chr2_2:8115166-8115185 None:intergenic 30.0%
ATGCATACTACTCCTATTAT+AGG + chr2_2:8115166-8115185 None:intergenic 30.0%
! GTGTTATTGGACTAAACAAT+TGG + chr2_2:8115500-8115519 None:intergenic 30.0%
TTTCAGCTTAGCAAAGAAAA+CGG + chr2_2:8115522-8115541 None:intergenic 30.0%
GCGTTTATTTAGGAAAATGT+TGG + chr2_2:8115561-8115580 None:intergenic 30.0%
TAAGCAGTAAGCATATTGTT+TGG - chr2_2:8115681-8115700 Msa0235290:intron 30.0%
ATCCGAACATTTAACAAATG+AGG + chr2_2:8116050-8116069 None:intergenic 30.0%
! ATATGTTTAAGGTGGTGATT+AGG - chr2_2:8116198-8116217 Msa0235290:intron 30.0%
!! TAGCTTTGAAGATGTGTTAT+TGG - chr2_2:8116255-8116274 Msa0235290:intron 30.0%
!! AGCTTTGAAGATGTGTTATT+GGG - chr2_2:8116256-8116275 Msa0235290:intron 30.0%
CTGAACAATTAGGAGAATTA+GGG - chr2_2:8116286-8116305 Msa0235290:intron 30.0%
AATTAGGAGAATTAGGGTAT+GGG - chr2_2:8116292-8116311 Msa0235290:intron 30.0%
ACCTAACATATTTCAAATGG+TGG - chr2_2:8116743-8116762 Msa0235290:intron 30.0%
! ACCACCATTTGAAATATGTT+AGG + chr2_2:8116747-8116766 None:intergenic 30.0%
! ATTTTACCATTGCAATGCTA+TGG - chr2_2:8116782-8116801 Msa0235290:intron 30.0%
! AGAGGATTTTACTAGAAAAG+GGG + chr2_2:8116809-8116828 None:intergenic 30.0%
GTTGTAGATGTAAGATTTAG+AGG + chr2_2:8116827-8116846 None:intergenic 30.0%
TTCATCTAGATAAAGACTCT+CGG + chr2_2:8116869-8116888 None:intergenic 30.0%
TACGAAAATGGTACAATTGT+TGG - chr2_2:8116976-8116995 Msa0235290:intron 30.0%
ATGAATCCTAATCTGTTCAA+AGG - chr2_2:8117078-8117097 Msa0235290:intron 30.0%
TGAATCCTAATCTGTTCAAA+GGG - chr2_2:8117079-8117098 Msa0235290:intron 30.0%
TGTATAATCTCTAGACCATA+TGG + chr2_2:8117219-8117238 None:intergenic 30.0%
ATGGACATCCTAACAAATAT+GGG - chr2_2:8117343-8117362 Msa0235290:CDS 30.0%
GCATTAATGATTGTGTTCAT+TGG - chr2_2:8117388-8117407 Msa0235290:CDS 30.0%
ATCTCATTAATAGTGTCAAC+AGG + chr2_2:8117426-8117445 None:intergenic 30.0%
! AATGTATTGAACAAAGGTGT+TGG - chr2_2:8117544-8117563 Msa0235290:five_prime_UTR 30.0%
CTGAATTAGCAATTCTTCAT+AGG + chr2_2:8117577-8117596 None:intergenic 30.0%
!! TTTTTGGTCAAATAGCTTAG+TGG - chr2_2:8117674-8117693 Msa0235290:five_prime_UTR 30.0%
TGATTGAAGTGAATGAGAAG+AGG + chr2_2:8113345-8113364 None:intergenic 35.0%
GGTTCTACAATAGTTGTTGT+TGG + chr2_2:8113390-8113409 None:intergenic 35.0%
AAGAACAAGTTGTTACAGCT+AGG + chr2_2:8113411-8113430 None:intergenic 35.0%
! AGCTGTAACAACTTGTTCTT+AGG - chr2_2:8113411-8113430 Msa0235290:CDS 35.0%
! ACAACTTGTTCTTAGGAACA+TGG - chr2_2:8113418-8113437 Msa0235290:CDS 35.0%
! CAACTTGTTCTTAGGAACAT+GGG - chr2_2:8113419-8113438 Msa0235290:CDS 35.0%
CACTTAAGAAAATCACTGTC+TGG + chr2_2:8113525-8113544 None:intergenic 35.0%
! CAGACAGTGATTTTCTTAAG+TGG - chr2_2:8113523-8113542 Msa0235290:CDS 35.0%
! GTGATTTTCTTAAGTGGAGA+TGG - chr2_2:8113529-8113548 Msa0235290:CDS 35.0%
AAAGGAAGTTCACAATCATC+AGG + chr2_2:8113558-8113577 None:intergenic 35.0%
AACTGAGTTGCATCAAACAA+AGG + chr2_2:8113576-8113595 None:intergenic 35.0%
GATTGTTAAGGGAAAGTCAA+TGG - chr2_2:8113602-8113621 Msa0235290:CDS 35.0%
GTCTATCCCCAATATTAGTT+TGG - chr2_2:8113771-8113790 Msa0235290:CDS 35.0%
TCAGATTTAGTGCTATAGCT+TGG - chr2_2:8114358-8114377 Msa0235290:intron 35.0%
ACAAATCTAGGTCTAGATTG+TGG - chr2_2:8114485-8114504 Msa0235290:intron 35.0%
CAAATCTAGGTCTAGATTGT+GGG - chr2_2:8114486-8114505 Msa0235290:intron 35.0%
AAATCTAGGTCTAGATTGTG+GGG - chr2_2:8114487-8114506 Msa0235290:intron 35.0%
AATTCCTCCATTGAAGTTGA+AGG - chr2_2:8114640-8114659 Msa0235290:intron 35.0%
AACTTGACCTTCAACTTCAA+TGG + chr2_2:8114650-8114669 None:intergenic 35.0%
!!! GTTTTCAAGTTGACAAGTAC+TGG + chr2_2:8114774-8114793 None:intergenic 35.0%
ACTTGAAAACTTGAAAGCAG+TGG - chr2_2:8114784-8114803 Msa0235290:intron 35.0%
CGGATCATGACTAAAAATGT+GGG - chr2_2:8114807-8114826 Msa0235290:intron 35.0%
GGATCATGACTAAAAATGTG+GGG - chr2_2:8114808-8114827 Msa0235290:intron 35.0%
GATCATGACTAAAAATGTGG+GGG - chr2_2:8114809-8114828 Msa0235290:intron 35.0%
ATCATGACTAAAAATGTGGG+GGG - chr2_2:8114810-8114829 Msa0235290:intron 35.0%
AAAAACCACCTCAAGATTAG+TGG - chr2_2:8114918-8114937 Msa0235290:intron 35.0%
AGAATTGGTTGAGAGATCAT+GGG + chr2_2:8115023-8115042 None:intergenic 35.0%
TTATCTCCATGTGCATTGTA+CGG + chr2_2:8115199-8115218 None:intergenic 35.0%
TTATCTCCATGTGCATTGTA+CGG + chr2_2:8115199-8115218 None:intergenic 35.0%
AGGAACCATTAAATCAAGGT+CGG - chr2_2:8115446-8115465 Msa0235290:intron 35.0%
TAAACAATTGGGATGGTATG+GGG + chr2_2:8115488-8115507 None:intergenic 35.0%
CTAAACAATTGGGATGGTAT+GGG + chr2_2:8115489-8115508 None:intergenic 35.0%
ACTAAACAATTGGGATGGTA+TGG + chr2_2:8115490-8115509 None:intergenic 35.0%
ATTGGACTAAACAATTGGGA+TGG + chr2_2:8115495-8115514 None:intergenic 35.0%
!! AGCAAAGAAAACGGTGTTAT+TGG + chr2_2:8115513-8115532 None:intergenic 35.0%
! TACGATGGTACTCTCTTTTT+AGG + chr2_2:8115778-8115797 None:intergenic 35.0%
! AATGTTCGGATCTAGAACTT+CGG - chr2_2:8116059-8116078 Msa0235290:intron 35.0%
! TGAAGATGTGTTATTGGGTT+AGG - chr2_2:8116261-8116280 Msa0235290:intron 35.0%
! GAAGATGTGTTATTGGGTTA+GGG - chr2_2:8116262-8116281 Msa0235290:intron 35.0%
CCTAATTCTCCTAATTGTTC+AGG + chr2_2:8116288-8116307 None:intergenic 35.0%
CCTGAACAATTAGGAGAATT+AGG - chr2_2:8116285-8116304 Msa0235290:intron 35.0%
CAATTAGGAGAATTAGGGTA+TGG - chr2_2:8116291-8116310 Msa0235290:intron 35.0%
ATTAGGAGAATTAGGGTATG+GGG - chr2_2:8116293-8116312 Msa0235290:intron 35.0%
AGTTGTCCAAGAGACAATTT+GGG + chr2_2:8116321-8116340 None:intergenic 35.0%
CTGAATCACTAACTCAATGA+AGG + chr2_2:8116439-8116458 None:intergenic 35.0%
CTTCATTGAGTTAGTGATTC+AGG - chr2_2:8116437-8116456 Msa0235290:intron 35.0%
TAATTTAAGCACACCCTTTC+AGG - chr2_2:8116672-8116691 Msa0235290:intron 35.0%
TCATCTAGATAAAGACTCTC+GGG + chr2_2:8116868-8116887 None:intergenic 35.0%
! TTCGACTATGTGATTTTCTC+CGG - chr2_2:8116922-8116941 Msa0235290:intron 35.0%
TTTCGTAGAATGTGAATGGT+CGG + chr2_2:8116963-8116982 None:intergenic 35.0%
! CCATTTTCGTAGAATGTGAA+TGG + chr2_2:8116967-8116986 None:intergenic 35.0%
CCATTCACATTCTACGAAAA+TGG - chr2_2:8116964-8116983 Msa0235290:intron 35.0%
TCTCCAAATCATTTCGAGAA+TGG - chr2_2:8117123-8117142 Msa0235290:CDS 35.0%
CAGTAATGAACATAAATGGG+AGG - chr2_2:8117188-8117207 Msa0235290:CDS 35.0%
AAGAACAATACAGGGAAGAA+TGG - chr2_2:8117270-8117289 Msa0235290:CDS 35.0%
! TATTTGTTAGGATGTCCATC+AGG + chr2_2:8117342-8117361 None:intergenic 35.0%
GATGGACATCCTAACAAATA+TGG - chr2_2:8117342-8117361 Msa0235290:CDS 35.0%
TCTCTATATGATCAGGAGAA+TGG - chr2_2:8117449-8117468 Msa0235290:CDS 35.0%
CTCTATATGATCAGGAGAAT+GGG - chr2_2:8117450-8117469 Msa0235290:CDS 35.0%
GGGAACAAGAAAATCCGTTT+AGG + chr2_2:8113291-8113310 None:intergenic 40.0%
! CAAGAATGAGTACTGTGAGT+GGG + chr2_2:8113311-8113330 None:intergenic 40.0%
! ACAAGAATGAGTACTGTGAG+TGG + chr2_2:8113312-8113331 None:intergenic 40.0%
! GGAAAGTCAATGGCTTTTGT+CGG - chr2_2:8113612-8113631 Msa0235290:CDS 40.0%
! CTTTTGTCGGTGACTCTATT+GGG - chr2_2:8113625-8113644 Msa0235290:CDS 40.0%
CTCTATTGGGAGAAATCAGA+TGG - chr2_2:8113638-8113657 Msa0235290:CDS 40.0%
GGGCAAATTTGTCATATAGG+AGG - chr2_2:8113972-8113991 Msa0235290:CDS 40.0%
AACAAATATAAGGTGGGTCC+TGG + chr2_2:8114273-8114292 None:intergenic 40.0%
TTGACCTTCAACTTCAATGG+AGG + chr2_2:8114647-8114666 None:intergenic 40.0%
! CTTTGTTGTAATGAAGGGGT+TGG - chr2_2:8114740-8114759 Msa0235290:intron 40.0%
TGAAAACTTGAAAGCAGTGG+CGG - chr2_2:8114787-8114806 Msa0235290:intron 40.0%
GCGGATCATGACTAAAAATG+TGG - chr2_2:8114806-8114825 Msa0235290:intron 40.0%
GAGAATTGGTTGAGAGATCA+TGG + chr2_2:8115024-8115043 None:intergenic 40.0%
AGTGGAAACTGAAGGAGAAT+TGG + chr2_2:8115038-8115057 None:intergenic 40.0%
TTTCCTAAGTCCCTTTCAAG+GGG + chr2_2:8115111-8115130 None:intergenic 40.0%
CTTTCCTAAGTCCCTTTCAA+GGG + chr2_2:8115112-8115131 None:intergenic 40.0%
CTTGAAAGGGACTTAGGAAA+GGG - chr2_2:8115111-8115130 Msa0235290:intron 40.0%
ATACAACCGTACAATGCACA+TGG - chr2_2:8115190-8115209 Msa0235290:intron 40.0%
TGCACATGGAGATAACAAAG+TGG - chr2_2:8115204-8115223 Msa0235290:intron 40.0%
TTTCCTAAGTCCCTTTCAAG+GGG + chr2_2:8115111-8115130 None:intergenic 40.0%
CTTTCCTAAGTCCCTTTCAA+GGG + chr2_2:8115112-8115131 None:intergenic 40.0%
CTTGAAAGGGACTTAGGAAA+GGG - chr2_2:8115111-8115130 Msa0235290:intron 40.0%
ATACAACCGTACAATGCACA+TGG - chr2_2:8115190-8115209 Msa0235290:intron 40.0%
TGCACATGGAGATAACAAAG+TGG - chr2_2:8115204-8115223 Msa0235290:intron 40.0%
! TTGCACCGACCTTGATTTAA+TGG + chr2_2:8115454-8115473 None:intergenic 40.0%
TAGTCATGTTAGCTGTGTCA+TGG - chr2_2:8115796-8115815 Msa0235290:intron 40.0%
GTTGTCCAAGAGACAATTTG+GGG + chr2_2:8116320-8116339 None:intergenic 40.0%
CAGTTGTCCAAGAGACAATT+TGG + chr2_2:8116322-8116341 None:intergenic 40.0%
CTGTCTTCAAGCATAACTGT+AGG - chr2_2:8116339-8116358 Msa0235290:intron 40.0%
! TTGATCAGATGGTCTTGACT+CGG - chr2_2:8116375-8116394 Msa0235290:intron 40.0%
! CGGTCTTTTATGGTTACACT+AGG - chr2_2:8116395-8116414 Msa0235290:intron 40.0%
ACTAGGACAAGTCTATGTGA+TGG - chr2_2:8116412-8116431 Msa0235290:intron 40.0%
AAGCCCATTTCCTTAACGAA+CGG + chr2_2:8116468-8116487 None:intergenic 40.0%
! TTCGTTAAGGAAATGGGCTT+CGG - chr2_2:8116468-8116487 Msa0235290:intron 40.0%
TAGATGAACCAGATACAGCT+TGG - chr2_2:8116881-8116900 Msa0235290:intron 40.0%
TCCTAATCTGTTCAAAGGGT+TGG - chr2_2:8117083-8117102 Msa0235290:CDS 40.0%
!! GTTCAAAGGGTTGGCATTTT+TGG - chr2_2:8117092-8117111 Msa0235290:CDS 40.0%
TCGCCATTCTCGAAATGATT+TGG + chr2_2:8117129-8117148 None:intergenic 40.0%
ATCATTTCGAGAATGGCGAA+TGG - chr2_2:8117130-8117149 Msa0235290:CDS 40.0%
AGTGCTGCAAAGAACAATAC+AGG - chr2_2:8117261-8117280 Msa0235290:CDS 40.0%
GTGCTGCAAAGAACAATACA+GGG - chr2_2:8117262-8117281 Msa0235290:CDS 40.0%
GACACATGCCCATATTTGTT+AGG + chr2_2:8117354-8117373 None:intergenic 40.0%
AACAAATATGGGCATGTGTC+TGG - chr2_2:8117354-8117373 Msa0235290:CDS 40.0%
GCATTGGAAACTGCTCTATG+TGG + chr2_2:8113128-8113147 None:intergenic 45.0%
TAGAGTCATGGAGTCATGTG+AGG - chr2_2:8113248-8113267 Msa0235290:three_prime_UTR 45.0%
! GCTTTTGTCGGTGACTCTAT+TGG - chr2_2:8113624-8113643 Msa0235290:CDS 45.0%
TTGAAAGGAAGGGGAAGAGA+CGG - chr2_2:8114324-8114343 Msa0235290:intron 45.0%
! TAGTGCTATAGCTTGGTGAC+AGG - chr2_2:8114365-8114384 Msa0235290:intron 45.0%
! AGTGCTATAGCTTGGTGACA+GGG - chr2_2:8114366-8114385 Msa0235290:intron 45.0%
GAAATTGGTACGTGTTGCAG+TGG - chr2_2:8114882-8114901 Msa0235290:intron 45.0%
TCGAACCACTAATCTTGAGG+TGG + chr2_2:8114926-8114945 None:intergenic 45.0%
GACTCGAACCACTAATCTTG+AGG + chr2_2:8114929-8114948 None:intergenic 45.0%
CCTTTCCTAAGTCCCTTTCA+AGG + chr2_2:8115113-8115132 None:intergenic 45.0%
CCTTGAAAGGGACTTAGGAA+AGG - chr2_2:8115110-8115129 Msa0235290:intron 45.0%
CCTTTCCTAAGTCCCTTTCA+AGG + chr2_2:8115113-8115132 None:intergenic 45.0%
CCTTGAAAGGGACTTAGGAA+AGG - chr2_2:8115110-8115129 Msa0235290:intron 45.0%
CACAGCTAACATGACTACGA+TGG + chr2_2:8115793-8115812 None:intergenic 45.0%
AAGCAAGCTCCTCAGTCTTT+CGG - chr2_2:8116097-8116116 Msa0235290:intron 45.0%
TACATATACACCCCCTTCTC+CGG + chr2_2:8116163-8116182 None:intergenic 45.0%
! AACGTCTCGACTTGATCAGA+TGG - chr2_2:8116364-8116383 Msa0235290:intron 45.0%
!!! GGTCTTGACTCGGTCTTTTA+TGG - chr2_2:8116385-8116404 Msa0235290:intron 45.0%
TGACCCGTTCGTTAAGGAAA+TGG - chr2_2:8116461-8116480 Msa0235290:intron 45.0%
GACCCGTTCGTTAAGGAAAT+GGG - chr2_2:8116462-8116481 Msa0235290:intron 45.0%
AGCCCATTTCCTTAACGAAC+GGG + chr2_2:8116467-8116486 None:intergenic 45.0%
ACAGCTTGGACAAGTCGAAT+TGG - chr2_2:8116895-8116914 Msa0235290:intron 45.0%
! GACTATGTGATTTTCTCCGG+TGG - chr2_2:8116925-8116944 Msa0235290:intron 45.0%
! TGATTTTCTCCGGTGGACAA+TGG - chr2_2:8116932-8116951 Msa0235290:intron 45.0%
TCGGAAAAACCATTGTCCAC+CGG + chr2_2:8116944-8116963 None:intergenic 45.0%
GCCAACCCTTTGAACAGATT+AGG + chr2_2:8117087-8117106 None:intergenic 45.0%
GAGAATGGCGAATGGAACAA+TGG - chr2_2:8117138-8117157 Msa0235290:CDS 45.0%
AATGGCGAATGGAACAATGG+TGG - chr2_2:8117141-8117160 Msa0235290:CDS 45.0%
! AAATGGGAGGTGCATCCATA+TGG - chr2_2:8117201-8117220 Msa0235290:CDS 45.0%
! GGGAAGAATGGTTCACGTTT+TGG - chr2_2:8117282-8117301 Msa0235290:CDS 45.0%
! GCAATGTTGATGAGACCTGA+TGG - chr2_2:8117324-8117343 Msa0235290:CDS 45.0%
TGTGTTCATTGGTGTATGCC+AGG - chr2_2:8117399-8117418 Msa0235290:CDS 45.0%
GTGTTCATTGGTGTATGCCA+GGG - chr2_2:8117400-8117419 Msa0235290:CDS 45.0%
TTAATAGTGTCAACAGGCCC+TGG + chr2_2:8117420-8117439 None:intergenic 45.0%
GGTGACAGGGTTATAGCTGA+CGG - chr2_2:8114379-8114398 Msa0235290:intron 50.0%
TCTAGGTCTAGATTGTGGGG+AGG - chr2_2:8114490-8114509 Msa0235290:intron 50.0%
ACGTGTTGCAGTGGTTCTCA+AGG - chr2_2:8114891-8114910 Msa0235290:intron 50.0%
GGATCTTCTCAAGAGCCCAT+GGG + chr2_2:8115084-8115103 None:intergenic 50.0%
GGGACTTAGGAAAGGGACTT+AGG - chr2_2:8115118-8115137 Msa0235290:intron 50.0%
TCCTTCAGTTTCCACTGTCC+TGG - chr2_2:8115042-8115061 Msa0235290:intron 50.0%
CCTTCAGTTTCCACTGTCCT+GGG - chr2_2:8115234-8115253 Msa0235290:intron 50.0%
CTTCAGTTTCCACTGTCCTG+GGG - chr2_2:8115235-8115254 Msa0235290:intron 50.0%
TTCAGTTTCCACTGTCCTGG+GGG - chr2_2:8115236-8115255 Msa0235290:intron 50.0%
GGATCTTCTCAAGAGCCCAT+GGG + chr2_2:8115084-8115103 None:intergenic 50.0%
! GGATCTAGAACTTCGGACAG+CGG - chr2_2:8116066-8116085 Msa0235290:intron 50.0%
CTCCTCAGTCTTTCGGACAT+TGG - chr2_2:8116104-8116123 Msa0235290:intron 50.0%
CACCAATGTCCGAAAGACTG+AGG + chr2_2:8116109-8116128 None:intergenic 50.0%
! GTCTTTCGGACATTGGTGTC+TGG - chr2_2:8116111-8116130 Msa0235290:intron 50.0%
! TTCGGACATTGGTGTCTGGT+CGG - chr2_2:8116115-8116134 Msa0235290:intron 50.0%
GGGTTAGGGCCTGAACAATT+AGG - chr2_2:8116276-8116295 Msa0235290:intron 50.0%
TCAGGATGACCCGTTCGTTA+AGG - chr2_2:8116455-8116474 Msa0235290:intron 50.0%
TCAGCACGAGCAACCTGAAA+GGG + chr2_2:8116688-8116707 None:intergenic 50.0%
AGGGGACCATAGCATTGCAA+TGG + chr2_2:8116791-8116810 None:intergenic 50.0%
CGACTTGTCCAAGCTGTATC+TGG + chr2_2:8116892-8116911 None:intergenic 50.0%
! GCGAATGGAACAATGGTGGA+GGG - chr2_2:8117145-8117164 Msa0235290:CDS 50.0%
AGGCGGACAGTGGAAACTGA+AGG + chr2_2:8115046-8115065 None:intergenic 55.0%
TTCAGTTTCCACTGTCCGCC+TGG - chr2_2:8115045-8115064 Msa0235290:intron 55.0%
TCAGTTTCCACTGTCCGCCT+GGG - chr2_2:8115046-8115065 Msa0235290:intron 55.0%
CGGATCTTCTCAAGAGCCCA+TGG + chr2_2:8115085-8115104 None:intergenic 55.0%
AAGATCCGCCACCCCTTGAA+AGG - chr2_2:8115097-8115116 Msa0235290:intron 55.0%
AGATCCGCCACCCCTTGAAA+GGG - chr2_2:8115098-8115117 Msa0235290:intron 55.0%
AAGTCCCTTTCAAGGGGTGG+CGG + chr2_2:8115105-8115124 None:intergenic 55.0%
CCTAAGTCCCTTTCAAGGGG+TGG + chr2_2:8115108-8115127 None:intergenic 55.0%
CCACCCCTTGAAAGGGACTT+AGG - chr2_2:8115105-8115124 Msa0235290:intron 55.0%
CCCAGGACAGTGGAAACTGA+AGG + chr2_2:8115237-8115256 None:intergenic 55.0%
CGGATCTTCTCAAGAGCCCA+TGG + chr2_2:8115085-8115104 None:intergenic 55.0%
AAGATCCGCCACCCCTTGAA+AGG - chr2_2:8115097-8115116 Msa0235290:intron 55.0%
AGATCCGCCACCCCTTGAAA+GGG - chr2_2:8115098-8115117 Msa0235290:intron 55.0%
AAGTCCCTTTCAAGGGGTGG+CGG + chr2_2:8115105-8115124 None:intergenic 55.0%
CCTAAGTCCCTTTCAAGGGG+TGG + chr2_2:8115108-8115127 None:intergenic 55.0%
CCACCCCTTGAAAGGGACTT+AGG - chr2_2:8115105-8115124 Msa0235290:intron 55.0%
! ACTGAGGAGCTTGCTTCCAC+TGG + chr2_2:8116093-8116112 None:intergenic 55.0%
! TCGGACATTGGTGTCTGGTC+GGG - chr2_2:8116116-8116135 Msa0235290:intron 55.0%
TCTGGTCGGGTATGCGTCTT+TGG - chr2_2:8116129-8116148 Msa0235290:intron 55.0%
TGCGTCTTTGGTCCGAAGAC+CGG - chr2_2:8116141-8116160 Msa0235290:intron 55.0%
TTTGGTCCGAAGACCGGAGA+AGG - chr2_2:8116147-8116166 Msa0235290:intron 55.0%
TTGGTCCGAAGACCGGAGAA+GGG - chr2_2:8116148-8116167 Msa0235290:intron 55.0%
GGGGACCCCAAATTGTCTCT+TGG - chr2_2:8116312-8116331 Msa0235290:intron 55.0%
CTCAGCACGAGCAACCTGAA+AGG + chr2_2:8116689-8116708 None:intergenic 55.0%
!! CTTTCAGGTTGCTCGTGCTG+AGG - chr2_2:8116687-8116706 Msa0235290:intron 55.0%
GGCGAATGGAACAATGGTGG+AGG - chr2_2:8117144-8117163 Msa0235290:CDS 55.0%
CAGTTTCCACTGTCCGCCTG+GGG - chr2_2:8115047-8115066 Msa0235290:intron 60.0%
AGTTTCCACTGTCCGCCTGG+GGG - chr2_2:8115048-8115067 Msa0235290:intron 60.0%
TCAAGAGCCCATGGGAGCCA+TGG + chr2_2:8115076-8115095 None:intergenic 60.0%
CATGGAGCCATGGCTCCCAT+GGG - chr2_2:8115262-8115281 Msa0235290:intron 60.0%
TCAAGAGCCCATGGGAGCCA+TGG + chr2_2:8115076-8115095 None:intergenic 60.0%
AACTTCGGACAGCGGACCAG+TGG - chr2_2:8116074-8116093 Msa0235290:intron 60.0%
TGGTCCGAAGACCGGAGAAG+GGG - chr2_2:8116149-8116168 Msa0235290:intron 60.0%
ACACCCCCTTCTCCGGTCTT+CGG + chr2_2:8116156-8116175 None:intergenic 60.0%
CCATGGGAGCCATGGCTCCA+TGG + chr2_2:8115264-8115283 None:intergenic 65.0%
CCATGGAGCCATGGCTCCCA+TGG - chr2_2:8115261-8115280 Msa0235290:intron 65.0%
GGTCCGAAGACCGGAGAAGG+GGG - chr2_2:8116150-8116169 Msa0235290:intron 65.0%
ATGGGAGCCATGGCTCCCCC+AGG + chr2_2:8115066-8115085 None:intergenic 70.0%
TGGGGGAGCCATGGCTCCCA+TGG - chr2_2:8115065-8115084 Msa0235290:intron 70.0%
GGGGGAGCCATGGCTCCCAT+GGG - chr2_2:8115066-8115085 Msa0235290:intron 70.0%
CCATGGCTCCCCCAGGACAG+TGG + chr2_2:8115247-8115266 None:intergenic 70.0%
CCACTGTCCTGGGGGAGCCA+TGG - chr2_2:8115244-8115263 Msa0235290:intron 70.0%
CATGGCTCCATGGCTCCCCC+AGG + chr2_2:8115254-8115273 None:intergenic 70.0%
CTGGGGGAGCCATGGAGCCA+TGG - chr2_2:8115252-8115271 Msa0235290:intron 70.0%
TGGCTCCCCCAGGCGGACAG+TGG + chr2_2:8115056-8115075 None:intergenic 75.0%
CTGTCCGCCTGGGGGAGCCA+TGG - chr2_2:8115056-8115075 Msa0235290:intron 75.0%
GGAGCCATGGCTCCCCCAGG+CGG + chr2_2:8115063-8115082 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 8113066 8117700 8113066 ID=Msa0235290;Name=Msa0235290
chr2_2 mRNA 8113066 8117700 8113066 ID=Msa0235290-mRNA-1;Parent=Msa0235290;Name=Msa0235290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=189|1|1|1|1|1|2|221|405
chr2_2 exon 8113066 8114072 8113066 ID=Msa0235290-mRNA-1:exon:3527;Parent=Msa0235290-mRNA-1
chr2_2 exon 8117080 8117700 8117080 ID=Msa0235290-mRNA-1:exon:3526;Parent=Msa0235290-mRNA-1
chr2_2 five_prime_UTR 8117512 8117700 8117512 ID=Msa0235290-mRNA-1:five_prime_utr;Parent=Msa0235290-mRNA-1
chr2_2 CDS 8117080 8117511 8117080 ID=Msa0235290-mRNA-1:cds;Parent=Msa0235290-mRNA-1
chr2_2 CDS 8113287 8114072 8113287 ID=Msa0235290-mRNA-1:cds;Parent=Msa0235290-mRNA-1
chr2_2 three_prime_UTR 8113066 8113286 8113066 ID=Msa0235290-mRNA-1:three_prime_utr;Parent=Msa0235290-mRNA-1
Gene Sequence

>Msa0235290

ATGGAGTCATGTGAGGCAACAGAGATTTTCAAACCTAAACGGATTTTCTTGTTCCCACTCACAGTACTCATTCTTGTGATACTTCTTCCTCTTCTCATTCACTTCAATCAAACATCATCAAAAGTACTATATCCAACAACAACTATTGTAGAACCTAGCTGTAACAACTTGTTCTTAGGAACATGGGTTCCTTATCTAAAACAACCTTATTACAATCAAACATGTCCTTTTATAACTGAAAAACAGAACTGTCTTATTCATGGAAGACCAGACAGTGATTTTCTTAAGTGGAGATGGAAACCTGATGATTGTGAACTTCCTTTGTTTGATGCAACTCAGTTTTTCAAGATTGTTAAGGGAAAGTCAATGGCTTTTGTCGGTGACTCTATTGGGAGAAATCAGATGGAATCATTACTATGTCTCTTGAATTCTGTTGCTCGTGCTGAGGATATTACAACTAAATATGTATCATCAATTGAAGACCTAACATATTTCAAATGGTGGTTTTATGCTGATTATAATTTTACCATTGCAATGCTATGGTCCCCTTTTCTAGTAAAATCCTCTAAATCTTACATCTACAACAGTTCTAATTTCTACAAACCCGAGAGTCTTTATCTAGATGAACCAGATACAGCTTGGACAAGTCGAATTGGAAATTTCGACTATGTGATTTTCTCCGGTGGACAATGGTTTTTCCGACCATTCACATTCTACGAAAATGGTACAATTGTTGGATGTCAAAAATGCAACAACTCAATAGAACTCAACTATTACGGATACAAGAAAGCGTATCGAACAGCTTTCAAAACTATTATGAATCCTAATCTGTTCAAAGGGTTGGCATTTTTGGTGACACATTCTCCAAATCATTTCGAGAATGGCGAATGGAACAATGGTGGAGGGTGTAATAGAACACAACCATTCAGTAATGAACATAAATGGGAGGTGCATCCATATGGTCTAGAGATTATACATCAAATACAATTGGATGAATTTAGTGCTGCAAAGAACAATACAGGGAAGAATGGTTCACGTTTTGGTTTGATTGATATAACAGATGCAATGTTGATGAGACCTGATGGACATCCTAACAAATATGGGCATGTGTCTGGTAAAAATGCAAGCATTAATGATTGTGTTCATTGGTGTATGCCAGGGCCTGTTGACACTATTAATGAGATTTTTCTCTATATGATCAGGAGAATGGGATTGTGA
Protein sequence

>Msa0235290

MESCEATEIFKPKRIFLFPLTVLILVILLPLLIHFNQTSSKVLYPTTTIVEPSCNNLFLGTWVPYLKQPYYNQTCPFITEKQNCLIHGRPDSDFLKWRWKPDDCELPLFDATQFFKIVKGKSMAFVGDSIGRNQMESLLCLLNSVARAEDITTKYVSSIEDLTYFKWWFYADYNFTIAMLWSPFLVKSSKSYIYNSSNFYKPESLYLDEPDTAWTSRIGNFDYVIFSGGQWFFRPFTFYENGTIVGCQKCNNSIELNYYGYKKAYRTAFKTIMNPNLFKGLAFLVTHSPNHFENGEWNNGGGCNRTQPFSNEHKWEVHPYGLEIIHQIQLDEFSAAKNNTGKNGSRFGLIDITDAMLMRPDGHPNKYGHVSGKNASINDCVHWCMPGPVDTINEIFLYMIRRMGL*