Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108450 | XP_003589825.2 | 90.704 | 398 | 16 | 2 | 1 | 377 | 1 | 398 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108450 | sp|Q2NI00|DHQS_METST | 38.235 | 374 | 170 | 10 | 49 | 377 | 2 | 359 | 5.81e-69 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108450 | G7IDE5 | 90.704 | 398 | 16 | 2 | 1 | 377 | 1 | 398 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014920 | Msa0108450 | 0.821068 | 4.915056e-53 | -8.615850e-47 |
| Msa0032120 | Msa0108450 | 0.807048 | 6.113063e-50 | -8.615850e-47 |
| Msa0032400 | Msa0108450 | 0.809265 | 2.060726e-50 | -8.615850e-47 |
| Msa0063580 | Msa0108450 | 0.854873 | 9.207196e-62 | -8.615850e-47 |
| Msa0073820 | Msa0108450 | 0.816189 | 6.288234e-52 | -8.615850e-47 |
| Msa0108450 | Msa0171780 | 0.807839 | 4.154683e-50 | -8.615850e-47 |
| Msa0108450 | Msa0185700 | 0.807424 | 5.089106e-50 | -8.615850e-47 |
| Msa0108450 | Msa0342200 | 0.801496 | 8.761800e-49 | -8.615850e-47 |
| Msa0108450 | Msa0450050 | 0.800954 | 1.131101e-48 | -8.615850e-47 |
| Msa0108450 | Msa0509970 | 0.800009 | 1.761779e-48 | -8.615850e-47 |
| Msa0108450 | Msa0527600 | 0.810304 | 1.231766e-50 | -8.615850e-47 |
| Msa0108450 | Msa0629290 | 0.801921 | 7.167873e-49 | -8.615850e-47 |
| Msa0108450 | Msa0792510 | 0.807065 | 6.063914e-50 | -8.615850e-47 |
| Msa0108450 | Msa0875630 | 0.800816 | 1.206924e-48 | -8.615850e-47 |
| Msa0108450 | Msa0925160 | 0.807947 | 3.941163e-50 | -8.615850e-47 |
| Msa0108450 | Msa1044340 | 0.800261 | 1.565578e-48 | -8.615850e-47 |
| Msa0108450 | Msa1129720 | 0.812113 | 4.991831e-51 | -8.615850e-47 |
| Msa0108450 | Msa1159100 | 0.815796 | 7.694194e-52 | -8.615850e-47 |
| Msa0108450 | Msa1229690 | 0.805689 | 1.182538e-49 | -8.615850e-47 |
| Msa0108450 | Msa1373950 | 0.811885 | 5.597575e-51 | -8.615850e-47 |
| Msa0108450 | Msa1385900 | 0.807451 | 5.021889e-50 | -8.615850e-47 |
| Msa0108450 | Msa1398480 | 0.811960 | 5.389830e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108450 | MtrunA17_Chr1g0165441 | 90.704 | 398 | 16 | 2 | 1 | 377 | 1 | 398 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108450 | AT3G28760.1 | 66.006 | 353 | 97 | 2 | 47 | 376 | 69 | 421 | 1.02e-168 | 478 |
| Msa0108450 | AT3G28760.2 | 66.006 | 353 | 97 | 2 | 47 | 376 | 91 | 443 | 2.33e-168 | 478 |
Find 78 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAGTGAGAAGGATATTT+TGG | 0.180793 | 1_3:+19978434 | Msa0108450:CDS |
| CAATGCATTCTACTTCTTCT+TGG | 0.222003 | 1_3:+19977157 | Msa0108450:CDS |
| GGAAAGGAGCAGCTTATATT+TGG | 0.262534 | 1_3:+19982593 | Msa0108450:three_prime_UTR |
| TTTGGATGCACAAAATAAAA+AGG | 0.273689 | 1_3:+19978452 | Msa0108450:CDS |
| GGCAAAAGATGCTTCACTTT+AGG | 0.292968 | 1_3:+19982717 | Msa0108450:three_prime_UTR |
| AATCAAAGAAAGTGTGGATA+TGG | 0.301157 | 1_3:+19977208 | Msa0108450:CDS |
| CACGCCTACATTGCTGTTCC+AGG | 0.323371 | 1_3:+19980446 | Msa0108450:CDS |
| AAGACTTGGTCTGATATCTT+TGG | 0.346536 | 1_3:-19982619 | None:intergenic |
| CATTGCTTTCTTCTGTTCTT+CGG | 0.350670 | 1_3:-19979722 | None:intergenic |
| AGTGATTGTGGTTGATCAAC+AGG | 0.351036 | 1_3:+19980511 | Msa0108450:CDS |
| ATGTCTTTACTGTCGCAAAT+TGG | 0.354779 | 1_3:+19977069 | Msa0108450:CDS |
| TTCCTCAACTTGCCAATGAT+TGG | 0.356737 | 1_3:+19977301 | Msa0108450:CDS |
| AGATGGCAAATACAGTCTTT+TGG | 0.378386 | 1_3:-19979417 | None:intergenic |
| TGAGCCTATTCTTGAGCTTA+AGG | 0.383726 | 1_3:+19979617 | Msa0108450:CDS |
| ATGTATGTAAACAGATATAA+TGG | 0.383937 | 1_3:+19982757 | Msa0108450:three_prime_UTR |
| AAATTCTTGAATCTCTATTC+CGG | 0.391166 | 1_3:-19982437 | None:intergenic |
| CAAATTCAAGTTGCTGGAAT+GGG | 0.397178 | 1_3:+19979774 | Msa0108450:CDS |
| GCACTTGAACATGGCTTAGA+TGG | 0.408508 | 1_3:+19979570 | Msa0108450:CDS |
| TGGACACCATTGGAGGATAC+TGG | 0.409798 | 1_3:+19977177 | Msa0108450:CDS |
| AATTTGTGTCACAGTGGCTT+TGG | 0.410779 | 1_3:-19979757 | None:intergenic |
| GTGACACAAATTCAAGTTGC+TGG | 0.412213 | 1_3:+19979768 | Msa0108450:CDS |
| GTAGAATGCATTGAAGAAGA+AGG | 0.440983 | 1_3:-19977147 | None:intergenic |
| CGGCAAAGAATTGCAATTGT+TGG | 0.452724 | 1_3:+19980536 | Msa0108450:CDS |
| ACAAATTGAATTACCTTGTA+CGG | 0.452777 | 1_3:-19982267 | None:intergenic |
| TCTTGTTCATTCAGAATGCT+TGG | 0.454670 | 1_3:+19979952 | Msa0108450:CDS |
| TACTTCTTCTTGGACACCAT+TGG | 0.458182 | 1_3:+19977167 | Msa0108450:CDS |
| CTCAAGAAATGTCTGAGCTT+CGG | 0.461769 | 1_3:-19979452 | None:intergenic |
| CCAGTGACATCACTAAAAGT+TGG | 0.464939 | 1_3:+19982373 | Msa0108450:CDS |
| TACCTGTCAGAATTAAAATC+AGG | 0.467479 | 1_3:+19980482 | Msa0108450:CDS |
| CAAGTTGAGGAAGGTGAGAT+GGG | 0.470330 | 1_3:-19977290 | None:intergenic |
| TAAAATACATGACCAATCAT+TGG | 0.473391 | 1_3:-19977313 | None:intergenic |
| ACAGCAATGTAGGCGTGAAC+TGG | 0.479131 | 1_3:-19980440 | None:intergenic |
| GCAAGTTGAGGAAGGTGAGA+TGG | 0.481357 | 1_3:-19977291 | None:intergenic |
| GCTTTAGTTTGTCCCGTACA+AGG | 0.485966 | 1_3:+19982254 | Msa0108450:CDS |
| AAACGTGTGTTGGAAGTAGA+AGG | 0.486239 | 1_3:-19977114 | None:intergenic |
| ACAAATTCAAGTTGCTGGAA+TGG | 0.489970 | 1_3:+19979773 | Msa0108450:CDS |
| TTGTTACCAGTATCCTCCAA+TGG | 0.499727 | 1_3:-19977183 | None:intergenic |
| TTCTTCTTGGACACCATTGG+AGG | 0.505703 | 1_3:+19977170 | Msa0108450:CDS |
| CAAATTGAATTACCTTGTAC+GGG | 0.507264 | 1_3:-19982266 | None:intergenic |
| AGGTAGGATGTTCTACCGCC+TGG | 0.514003 | 1_3:-19980464 | None:intergenic |
| TAGGTTGGATCCTTTGCTAG+AGG | 0.519842 | 1_3:+19979923 | Msa0108450:intron |
| CTAAGTCGTTCTAGTTCCTC+CGG | 0.524065 | 1_3:-19978501 | None:intergenic |
| CTCTGCAGTCTTATGAGACC+TGG | 0.525874 | 1_3:+19979816 | Msa0108450:CDS |
| TAGAATGCATTGAAGAAGAA+GGG | 0.527695 | 1_3:-19977146 | None:intergenic |
| GTAAACAGATATAATGGAGT+TGG | 0.537288 | 1_3:+19982763 | Msa0108450:three_prime_UTR |
| CTTACCGCATTCACCCGAAA+AGG | 0.538390 | 1_3:-19979998 | None:intergenic |
| ATCAGGAAAAGAAGTGATTG+TGG | 0.556374 | 1_3:+19980499 | Msa0108450:CDS |
| CAAGGAGGGGCTCGACATAC+CGG | 0.557488 | 1_3:+19982418 | Msa0108450:CDS |
| AAGAAATAATCCTCTAGCAA+AGG | 0.559960 | 1_3:-19979933 | None:intergenic |
| ATCACCTTAAGCTCAAGAAT+AGG | 0.564561 | 1_3:-19979621 | None:intergenic |
| CTGCAGCTGTTGAAAGAGGA+TGG | 0.567310 | 1_3:+19977253 | Msa0108450:CDS |
| GACCAATCATTGGCAAGTTG+AGG | 0.569625 | 1_3:-19977303 | None:intergenic |
| TTCGGATGCATTATCAGAGA+TGG | 0.570257 | 1_3:-19979434 | None:intergenic |
| AAATTCAAGTTGCTGGAATG+GGG | 0.571305 | 1_3:+19979775 | Msa0108450:CDS |
| GGAATTGTGAAAAGTCCAGT+TGG | 0.576153 | 1_3:+19982696 | Msa0108450:three_prime_UTR |
| TTCTATTGAGAATACAAGGA+GGG | 0.587874 | 1_3:+19982404 | Msa0108450:CDS |
| CGAAGCTCAGACATTTCTTG+AGG | 0.591185 | 1_3:+19979453 | Msa0108450:CDS |
| ATGAAAATAATGCAAAGACT+TGG | 0.605754 | 1_3:-19982633 | None:intergenic |
| GAAGTTCTATTGAGAATACA+AGG | 0.609646 | 1_3:+19982400 | Msa0108450:CDS |
| AATCATTGGCAAGTTGAGGA+AGG | 0.609879 | 1_3:-19977299 | None:intergenic |
| ACCGCCTGGAACAGCAATGT+AGG | 0.611914 | 1_3:-19980450 | None:intergenic |
| TCTATTGAGAATACAAGGAG+GGG | 0.613333 | 1_3:+19982405 | Msa0108450:CDS |
| ATGACTGCAGCTGTTGAAAG+AGG | 0.614177 | 1_3:+19977249 | Msa0108450:CDS |
| GTTGTGACGCAAACGTGTGT+TGG | 0.621291 | 1_3:-19977124 | None:intergenic |
| AATTCAAGTTGCTGGAATGG+GGG | 0.626295 | 1_3:+19979776 | Msa0108450:CDS |
| GTGTTGGAAGTAGAAGGTGG+TGG | 0.630075 | 1_3:-19977108 | None:intergenic |
| AAGAGGACAGATGACTGCAA+TGG | 0.637867 | 1_3:-19978409 | None:intergenic |
| TTGTGGTTGATCAACAGGGT+CGG | 0.642420 | 1_3:+19980516 | Msa0108450:CDS |
| AGTCTTATGAGACCTGGTGA+AGG | 0.644139 | 1_3:+19979822 | Msa0108450:CDS |
| CATACGAGAAGTCCTTCACC+AGG | 0.653315 | 1_3:-19979834 | None:intergenic |
| GATATGGACAAAGAACAAGC+AGG | 0.656378 | 1_3:+19977224 | Msa0108450:CDS |
| GTGATTGTGGTTGATCAACA+GGG | 0.670264 | 1_3:+19980512 | Msa0108450:CDS |
| GCCTACATTGCTGTTCCAGG+CGG | 0.679259 | 1_3:+19980449 | Msa0108450:CDS |
| AACTTGAATTTGTGTCACAG+TGG | 0.683036 | 1_3:-19979763 | None:intergenic |
| GTAAAGACATCTTATGTCAG+CGG | 0.685556 | 1_3:-19977056 | None:intergenic |
| GTTCTATTGAGAATACAAGG+AGG | 0.709797 | 1_3:+19982403 | Msa0108450:CDS |
| ACTAGAACGACTTAGACCTG+AGG | 0.735230 | 1_3:+19978509 | Msa0108450:CDS |
| CGTGTGTTGGAAGTAGAAGG+TGG | 0.751214 | 1_3:-19977111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAGTCTTTAAAATTTT+AGG | + | chr1_3:19977926-19977945 | Msa0108450:intron | 10.0% |
| !!! | TTAGTTTTTAAAAATGTTAA+TGG | + | chr1_3:19981407-19981426 | Msa0108450:intron | 10.0% |
| !! | TGTTAAAATAGTTAAAAATA+TGG | - | chr1_3:19981726-19981745 | None:intergenic | 10.0% |
| !!! | GATTTAAAATATAATGGAAA+GGG | - | chr1_3:19977357-19977376 | None:intergenic | 15.0% |
| !!! | CAATTGGATTTAAAATATAA+TGG | - | chr1_3:19977363-19977382 | None:intergenic | 15.0% |
| !! | ATTAAAATGAAAAACAAAAG+GGG | - | chr1_3:19978093-19978112 | None:intergenic | 15.0% |
| !! | GATTAAAATGAAAAACAAAA+GGG | - | chr1_3:19978094-19978113 | None:intergenic | 15.0% |
| !! | AGATTAAAATGAAAAACAAA+AGG | - | chr1_3:19978095-19978114 | None:intergenic | 15.0% |
| !!! | TTTTATGATATTTGGAATTT+TGG | + | chr1_3:19978370-19978389 | Msa0108450:intron | 15.0% |
| !! | TACATTATTGAAATTGAAAA+TGG | - | chr1_3:19979317-19979336 | None:intergenic | 15.0% |
| !!! | AAATATTTTCCAATAACTAA+TGG | - | chr1_3:19980618-19980637 | None:intergenic | 15.0% |
| !!! | CAAAAAAACAAATTCTAAAA+AGG | - | chr1_3:19980669-19980688 | None:intergenic | 15.0% |
| !!! | CTTTTGCTTATATTTTATAA+TGG | - | chr1_3:19981073-19981092 | None:intergenic | 15.0% |
| !! | AAACGATGTAAAAAATTATA+CGG | - | chr1_3:19981539-19981558 | None:intergenic | 15.0% |
| !! | AATTATCTGAATTTGAAAAT+AGG | + | chr1_3:19981858-19981877 | Msa0108450:intron | 15.0% |
| !!! | GGATTTAAAATATAATGGAA+AGG | - | chr1_3:19977358-19977377 | None:intergenic | 20.0% |
| !! | TAATGTGATACTAAAACAAT+TGG | - | chr1_3:19977379-19977398 | None:intergenic | 20.0% |
| !! | AATGGAAACAAATAACAAAA+GGG | - | chr1_3:19977402-19977421 | None:intergenic | 20.0% |
| !! | AAATGGAAACAAATAACAAA+AGG | - | chr1_3:19977403-19977422 | None:intergenic | 20.0% |
| !! | GATGAAATTTAAACACAAAA+TGG | - | chr1_3:19977420-19977439 | None:intergenic | 20.0% |
| !! | AAATTAACCAAATACTTAAG+TGG | + | chr1_3:19977971-19977990 | Msa0108450:intron | 20.0% |
| !!! | TTAATTTGTTGATACATGAT+TGG | + | chr1_3:19978191-19978210 | Msa0108450:intron | 20.0% |
| !!! | ACTTTTATTTTAATGAACTC+CGG | - | chr1_3:19978291-19978310 | None:intergenic | 20.0% |
| !! | TTGTAGTTAATTTACTTGAT+TGG | + | chr1_3:19978550-19978569 | Msa0108450:intron | 20.0% |
| !! | TGAGGTATATAAATATTAGT+AGG | + | chr1_3:19979471-19979490 | Msa0108450:intron | 20.0% |
| !! | GAGGTATATAAATATTAGTA+GGG | + | chr1_3:19979472-19979491 | Msa0108450:intron | 20.0% |
| !! | AGGTATATAAATATTAGTAG+GGG | + | chr1_3:19979473-19979492 | Msa0108450:intron | 20.0% |
| !! | ATTATAAATAATGAGACAGA+GGG | - | chr1_3:19980874-19980893 | None:intergenic | 20.0% |
| !! | TATTATAAATAATGAGACAG+AGG | - | chr1_3:19980875-19980894 | None:intergenic | 20.0% |
| !! | TCTTGAGATACAATTAATAA+GGG | - | chr1_3:19980940-19980959 | None:intergenic | 20.0% |
| !! | ATCTTGAGATACAATTAATA+AGG | - | chr1_3:19980941-19980960 | None:intergenic | 20.0% |
| !! | AAATAATGAATTCAAAACCA+TGG | + | chr1_3:19981804-19981823 | Msa0108450:intron | 20.0% |
| !! | AATAATGAATTCAAAACCAT+GGG | + | chr1_3:19981805-19981824 | Msa0108450:intron | 20.0% |
| !!! | ATTTTTCTTTTCCATTGATT+TGG | - | chr1_3:19981841-19981860 | None:intergenic | 20.0% |
| !! | ATGTATGTAAACAGATATAA+TGG | + | chr1_3:19982757-19982776 | Msa0108450:three_prime_UTR | 20.0% |
| ! | ACAAAAAATCAAAGAAAGTG+TGG | + | chr1_3:19977202-19977221 | Msa0108450:CDS | 25.0% |
| ! | TAAAATACATGACCAATCAT+TGG | - | chr1_3:19977316-19977335 | None:intergenic | 25.0% |
| !!! | AGTCTTTAAAATTTTAGGAG+AGG | + | chr1_3:19977931-19977950 | Msa0108450:intron | 25.0% |
| ! | ATTGAAGTCTTCAATTACAT+TGG | + | chr1_3:19978002-19978021 | Msa0108450:intron | 25.0% |
| !! | CATTCATAAGGAAGATATTT+TGG | + | chr1_3:19978149-19978168 | Msa0108450:intron | 25.0% |
| !! | TGGAAATGTTTTTCACATTT+AGG | + | chr1_3:19978211-19978230 | Msa0108450:intron | 25.0% |
| !! | AAATAGAGTTTGAGTTATGT+TGG | + | chr1_3:19978250-19978269 | Msa0108450:intron | 25.0% |
| ! | GGAGTTCATTAAAATAAAAG+TGG | + | chr1_3:19978290-19978309 | Msa0108450:intron | 25.0% |
| ! | TTTGGATGCACAAAATAAAA+AGG | + | chr1_3:19978452-19978471 | Msa0108450:CDS | 25.0% |
| ! | AAACAAGGAAAACTAATCTA+AGG | - | chr1_3:19978811-19978830 | None:intergenic | 25.0% |
| !!! | ATATTGATTCAGCAAAAACA+AGG | - | chr1_3:19978826-19978845 | None:intergenic | 25.0% |
| !!! | TTTGAGCAATTTTCAAGTAT+CGG | + | chr1_3:19978930-19978949 | Msa0108450:intron | 25.0% |
| !! | TTATTACTACCAATTTTCTG+AGG | + | chr1_3:19979205-19979224 | Msa0108450:intron | 25.0% |
| !! | TATTACTACCAATTTTCTGA+GGG | + | chr1_3:19979206-19979225 | Msa0108450:intron | 25.0% |
| ! | AGATTTAAACTGAAAGTAAG+AGG | - | chr1_3:19979686-19979705 | None:intergenic | 25.0% |
| ! | ACTTTCAGTTTAAATCTTTC+AGG | + | chr1_3:19979689-19979708 | Msa0108450:intron | 25.0% |
| !!! | AAGTTTTTGACTGTTAAGAA+TGG | - | chr1_3:19979899-19979918 | None:intergenic | 25.0% |
| ! | AACAGTCAAAAACTTTCTTT+AGG | + | chr1_3:19979904-19979923 | Msa0108450:intron | 25.0% |
| ! | AAGATGAATGTTTGATGTTA+TGG | + | chr1_3:19980355-19980374 | Msa0108450:intron | 25.0% |
| ! | TTTGTGTATCCATTAGTTAT+TGG | + | chr1_3:19980606-19980625 | Msa0108450:intron | 25.0% |
| ! | GAATTTGAACAAATCACTAT+TGG | + | chr1_3:19980821-19980840 | Msa0108450:intron | 25.0% |
| ! | AAACAGTAAGATGAATAGTT+AGG | - | chr1_3:19980965-19980984 | None:intergenic | 25.0% |
| !!! | TTACTGTTTTTGTCAAATAG+CGG | + | chr1_3:19980976-19980995 | Msa0108450:intron | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | + | chr1_3:19981097-19981116 | Msa0108450:intron | 25.0% |
| !! | GATGTACTTGGTTTAAAATT+TGG | - | chr1_3:19981124-19981143 | None:intergenic | 25.0% |
| ! | TCAAACAAAATTGATGTACT+TGG | - | chr1_3:19981136-19981155 | None:intergenic | 25.0% |
| !!! | TAACAATGTAGTTTGTTTCA+AGG | - | chr1_3:19981268-19981287 | None:intergenic | 25.0% |
| ! | CATGATAAAATAAGCTTCAT+TGG | - | chr1_3:19981306-19981325 | None:intergenic | 25.0% |
| !! | AATCATCTTTTCCACTAATT+AGG | - | chr1_3:19981504-19981523 | None:intergenic | 25.0% |
| ! | TAATTAGTGGAAAAGATGAT+TGG | + | chr1_3:19981503-19981522 | Msa0108450:intron | 25.0% |
| ! | TGTAAAAAACACGGAAATAT+GGG | - | chr1_3:19981671-19981690 | None:intergenic | 25.0% |
| ! | GATTTATGGTGTAAAAAACA+CGG | - | chr1_3:19981680-19981699 | None:intergenic | 25.0% |
| ! | AACAAGGAAATATGGATTTA+TGG | - | chr1_3:19981694-19981713 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTTTAGTTGCTG+TGG | - | chr1_3:19981770-19981789 | None:intergenic | 25.0% |
| ! | ATAATGAATTCAAAACCATG+GGG | + | chr1_3:19981806-19981825 | Msa0108450:intron | 25.0% |
| ! | TTTAACTCTGAATTTCATCA+GGG | - | chr1_3:19981924-19981943 | None:intergenic | 25.0% |
| ! | ATTTAACTCTGAATTTCATC+AGG | - | chr1_3:19981925-19981944 | None:intergenic | 25.0% |
| ! | TAAAGACAACTAGAAATAGA+TGG | - | chr1_3:19982068-19982087 | None:intergenic | 25.0% |
| !! | TTAGCAATATTTTCATAGTG+TGG | + | chr1_3:19982085-19982104 | Msa0108450:intron | 25.0% |
| ! | ACAAATTGAATTACCTTGTA+CGG | - | chr1_3:19982270-19982289 | None:intergenic | 25.0% |
| ! | AAATTCTTGAATCTCTATTC+CGG | - | chr1_3:19982440-19982459 | None:intergenic | 25.0% |
| ! | ATGAAAATAATGCAAAGACT+TGG | - | chr1_3:19982636-19982655 | None:intergenic | 25.0% |
| !! | ATTTAGCATCTCTTTCTTTT+AGG | + | chr1_3:19982675-19982694 | Msa0108450:three_prime_UTR | 25.0% |
| TAGAATGCATTGAAGAAGAA+GGG | - | chr1_3:19977149-19977168 | None:intergenic | 30.0% | |
| ! | AATCAAAGAAAGTGTGGATA+TGG | + | chr1_3:19977208-19977227 | Msa0108450:CDS | 30.0% |
| AACACTAAGTAGAAACACAA+TGG | - | chr1_3:19977442-19977461 | None:intergenic | 30.0% | |
| ! | ATTGTGTTTCTACTTAGTGT+TGG | + | chr1_3:19977441-19977460 | Msa0108450:intron | 30.0% |
| TGAAAATTCAGCTTTCATTG+TGG | + | chr1_3:19977768-19977787 | Msa0108450:intron | 30.0% | |
| TTTCTATGACAACTATCCAA+GGG | - | chr1_3:19977876-19977895 | None:intergenic | 30.0% | |
| ATTTCTATGACAACTATCCA+AGG | - | chr1_3:19977877-19977896 | None:intergenic | 30.0% | |
| !!! | CTTTAAAATTTTAGGAGAGG+AGG | + | chr1_3:19977934-19977953 | Msa0108450:intron | 30.0% |
| TCACAAACCACTTAAGTATT+TGG | - | chr1_3:19977981-19978000 | None:intergenic | 30.0% | |
| ACAAATTTGATCCAATGTCT+TGG | + | chr1_3:19978121-19978140 | Msa0108450:intron | 30.0% | |
| !! | TTGGTGATTTTGAATTTTGC+CGG | + | chr1_3:19978269-19978288 | Msa0108450:intron | 30.0% |
| AGTTAATTTACTTGATTGGC+AGG | + | chr1_3:19978554-19978573 | Msa0108450:intron | 30.0% | |
| TCTAGACACAGAATAATCAA+CGG | - | chr1_3:19979029-19979048 | None:intergenic | 30.0% | |
| ACTTTCTACTTGAAGAAATG+TGG | + | chr1_3:19979245-19979264 | Msa0108450:intron | 30.0% | |
| ATGTGGTTGTTTATATTTGC+TGG | + | chr1_3:19979262-19979281 | Msa0108450:intron | 30.0% | |
| ! | TTGCAACCTTTGAATTTTGT+AGG | + | chr1_3:19979548-19979567 | Msa0108450:intron | 30.0% |
| AATACTCAAGAAGCTTCAAA+TGG | - | chr1_3:19979654-19979673 | None:intergenic | 30.0% | |
| ! | CTCGTATGTATTCATTTTGA+TGG | + | chr1_3:19979849-19979868 | Msa0108450:intron | 30.0% |
| GTCAAAAACTTTCTTTAGGT+TGG | + | chr1_3:19979908-19979927 | Msa0108450:intron | 30.0% | |
| AAGAAATAATCCTCTAGCAA+AGG | - | chr1_3:19979936-19979955 | None:intergenic | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr1_3:19980180-19980199 | None:intergenic | 30.0% |
| !! | TTAACCAAACTAGTCTTTCA+TGG | + | chr1_3:19980294-19980313 | Msa0108450:intron | 30.0% |
| ATTCATCATAGAGTTTCTCT+TGG | - | chr1_3:19980389-19980408 | None:intergenic | 30.0% | |
| ATTACAAGTAACTGGTGAAA+AGG | - | chr1_3:19980412-19980431 | None:intergenic | 30.0% | |
| ACCAGTTACTTGTAATAACA+GGG | + | chr1_3:19980416-19980435 | Msa0108450:intron | 30.0% | |
| !!! | TGATTTTAATTCTGACAGGT+AGG | - | chr1_3:19980483-19980502 | None:intergenic | 30.0% |
| TACCTGTCAGAATTAAAATC+AGG | + | chr1_3:19980482-19980501 | Msa0108450:CDS | 30.0% | |
| !!! | TTCCTGATTTTAATTCTGAC+AGG | - | chr1_3:19980487-19980506 | None:intergenic | 30.0% |
| GTCTACTTTCTATCTTTACA+CGG | - | chr1_3:19980562-19980581 | None:intergenic | 30.0% | |
| AAAGGATACTTAGTATGAGA+CGG | - | chr1_3:19980651-19980670 | None:intergenic | 30.0% | |
| ! | TGTTTCTTATGTGTTCTAGA+AGG | - | chr1_3:19980704-19980723 | None:intergenic | 30.0% |
| !! | CAATGGTGAGTTGATTAATT+AGG | - | chr1_3:19980772-19980791 | None:intergenic | 30.0% |
| ! | CTTTTGCTTATGTCTTGTAA+TGG | + | chr1_3:19981160-19981179 | Msa0108450:intron | 30.0% |
| TAAAAGACAGGTAATATGAG+AGG | + | chr1_3:19981371-19981390 | Msa0108450:intron | 30.0% | |
| AAAAGACAGGTAATATGAGA+GGG | + | chr1_3:19981372-19981391 | Msa0108450:intron | 30.0% | |
| !! | TTTTGAAGGTAGGAACATAA+GGG | - | chr1_3:19981462-19981481 | None:intergenic | 30.0% |
| !! | TTTTTGAAGGTAGGAACATA+AGG | - | chr1_3:19981463-19981482 | None:intergenic | 30.0% |
| !!! | TAAGGAAGTTTGGTTTTTGA+AGG | - | chr1_3:19981476-19981495 | None:intergenic | 30.0% |
| ATGATGCTAGAGTGAAAATA+AGG | - | chr1_3:19981594-19981613 | None:intergenic | 30.0% | |
| TATGGGTGCAGTTAAAAATA+TGG | - | chr1_3:19981654-19981673 | None:intergenic | 30.0% | |
| GTGTAAAAAACACGGAAATA+TGG | - | chr1_3:19981672-19981691 | None:intergenic | 30.0% | |
| TAATGAATTCAAAACCATGG+GGG | + | chr1_3:19981807-19981826 | Msa0108450:intron | 30.0% | |
| TTGTAAGTGTAATACATGGT+GGG | - | chr1_3:19981948-19981967 | None:intergenic | 30.0% | |
| TTTGTAAGTGTAATACATGG+TGG | - | chr1_3:19981949-19981968 | None:intergenic | 30.0% | |
| GAGTTTGTAAGTGTAATACA+TGG | - | chr1_3:19981952-19981971 | None:intergenic | 30.0% | |
| AGATGTAAGAGAACTTGAAA+TGG | + | chr1_3:19982016-19982035 | Msa0108450:intron | 30.0% | |
| CAAATTGAATTACCTTGTAC+GGG | - | chr1_3:19982269-19982288 | None:intergenic | 30.0% | |
| AACGGTTTATTTCCTGAATA+GGG | - | chr1_3:19982340-19982359 | None:intergenic | 30.0% | |
| TAACGGTTTATTTCCTGAAT+AGG | - | chr1_3:19982341-19982360 | None:intergenic | 30.0% | |
| !!! | ACTGGAAAAGCTGTTTTTAA+CGG | - | chr1_3:19982358-19982377 | None:intergenic | 30.0% |
| GAAGTTCTATTGAGAATACA+AGG | + | chr1_3:19982400-19982419 | Msa0108450:CDS | 30.0% | |
| TTCTATTGAGAATACAAGGA+GGG | + | chr1_3:19982404-19982423 | Msa0108450:CDS | 30.0% | |
| !!! | AGAGTGGTTCATGATTTTTT+TGG | + | chr1_3:19982565-19982584 | Msa0108450:intron | 30.0% |
| !!! | TTCATGATTTTTTTGGCTAG+AGG | + | chr1_3:19982572-19982591 | Msa0108450:three_prime_UTR | 30.0% |
| ! | GTAAACAGATATAATGGAGT+TGG | + | chr1_3:19982763-19982782 | Msa0108450:three_prime_UTR | 30.0% |
| GTAAAGACATCTTATGTCAG+CGG | - | chr1_3:19977059-19977078 | None:intergenic | 35.0% | |
| ATGTCTTTACTGTCGCAAAT+TGG | + | chr1_3:19977069-19977088 | Msa0108450:CDS | 35.0% | |
| GTAGAATGCATTGAAGAAGA+AGG | - | chr1_3:19977150-19977169 | None:intergenic | 35.0% | |
| CAATGCATTCTACTTCTTCT+TGG | + | chr1_3:19977157-19977176 | Msa0108450:CDS | 35.0% | |
| TGGAAATTCTGCTTTCATTG+CGG | + | chr1_3:19977461-19977480 | Msa0108450:intron | 35.0% | |
| ACTCAAATTTCGCAATTAGG+AGG | - | chr1_3:19977498-19977517 | None:intergenic | 35.0% | |
| GCAACTCAAATTTCGCAATT+AGG | - | chr1_3:19977501-19977520 | None:intergenic | 35.0% | |
| ACGTCATATCTATAGGCAAT+GGG | - | chr1_3:19977581-19977600 | None:intergenic | 35.0% | |
| ACACTACACGTCATATCTAT+AGG | - | chr1_3:19977588-19977607 | None:intergenic | 35.0% | |
| GTGTAGTGTTTGTAAAGCTT+GGG | + | chr1_3:19977599-19977618 | Msa0108450:intron | 35.0% | |
| CTAACTCAACCATACAAAAC+CGG | - | chr1_3:19977643-19977662 | None:intergenic | 35.0% | |
| TTCTATGACAACTATCCAAG+GGG | - | chr1_3:19977875-19977894 | None:intergenic | 35.0% | |
| TGAATGTCATTCCAAGACAT+TGG | - | chr1_3:19978135-19978154 | None:intergenic | 35.0% | |
| GTCTTGGAATGACATTCATA+AGG | + | chr1_3:19978137-19978156 | Msa0108450:intron | 35.0% | |
| TTTGGCGATAGTAAAATGCT+TGG | + | chr1_3:19978167-19978186 | Msa0108450:intron | 35.0% | |
| !! | ATTTGGAATTTTGGCCATGA+TGG | + | chr1_3:19978379-19978398 | Msa0108450:intron | 35.0% |
| ! | TGCTAGTGAGAAGGATATTT+TGG | + | chr1_3:19978434-19978453 | Msa0108450:CDS | 35.0% |
| TGTCGAAACGTCAAAAATTG+TGG | - | chr1_3:19978481-19978500 | None:intergenic | 35.0% | |
| ! | AATTTTTGACGTTTCGACAC+CGG | + | chr1_3:19978482-19978501 | Msa0108450:CDS | 35.0% |
| AGTGTCTCATATAGTCCTTA+CGG | + | chr1_3:19978628-19978647 | Msa0108450:intron | 35.0% | |
| TTCAAACGACTTTCAAGCAT+TGG | - | chr1_3:19978658-19978677 | None:intergenic | 35.0% | |
| !! | AAGTTATTTTCTCACCCGTA+AGG | + | chr1_3:19978851-19978870 | Msa0108450:intron | 35.0% |
| CATTAGCTAGTCCTTAAAGA+TGG | - | chr1_3:19978993-19979012 | None:intergenic | 35.0% | |
| !! | CATCTTTAAGGACTAGCTAA+TGG | + | chr1_3:19978991-19979010 | Msa0108450:intron | 35.0% |
| ! | GCAGCAATTATATTTTCTGC+AGG | - | chr1_3:19979385-19979404 | None:intergenic | 35.0% |
| !! | ATACAGTCTTTTGGCTGTTT+TGG | - | chr1_3:19979411-19979430 | None:intergenic | 35.0% |
| ! | AGATGGCAAATACAGTCTTT+TGG | - | chr1_3:19979420-19979439 | None:intergenic | 35.0% |
| !! | AATATTAGTAGGGGTGTTAC+AGG | + | chr1_3:19979482-19979501 | Msa0108450:intron | 35.0% |
| ATTCAAAGGTTGCAACTGTA+AGG | - | chr1_3:19979543-19979562 | None:intergenic | 35.0% | |
| CAAGTGCCTACAAAATTCAA+AGG | - | chr1_3:19979557-19979576 | None:intergenic | 35.0% | |
| ! | ATTTTGTAGGCACTTGAACA+TGG | + | chr1_3:19979561-19979580 | Msa0108450:intron | 35.0% |
| ATCACCTTAAGCTCAAGAAT+AGG | - | chr1_3:19979624-19979643 | None:intergenic | 35.0% | |
| ! | TTGAAGCTTCTTGAGTATTG+AGG | + | chr1_3:19979655-19979674 | Msa0108450:intron | 35.0% |
| CATTGCTTTCTTCTGTTCTT+CGG | - | chr1_3:19979725-19979744 | None:intergenic | 35.0% | |
| AACTTGAATTTGTGTCACAG+TGG | - | chr1_3:19979766-19979785 | None:intergenic | 35.0% | |
| !! | ACAAATTCAAGTTGCTGGAA+TGG | + | chr1_3:19979773-19979792 | Msa0108450:CDS | 35.0% |
| !! | CAAATTCAAGTTGCTGGAAT+GGG | + | chr1_3:19979774-19979793 | Msa0108450:CDS | 35.0% |
| !! | AAATTCAAGTTGCTGGAATG+GGG | + | chr1_3:19979775-19979794 | Msa0108450:CDS | 35.0% |
| TCTTGTTCATTCAGAATGCT+TGG | + | chr1_3:19979952-19979971 | Msa0108450:CDS | 35.0% | |
| AAGCTATCTTGGAGACTTTA+TGG | - | chr1_3:19980169-19980188 | None:intergenic | 35.0% | |
| CATCAAACATTCATCTTCCA+AGG | - | chr1_3:19980352-19980371 | None:intergenic | 35.0% | |
| CACCAGTTACTTGTAATAAC+AGG | + | chr1_3:19980415-19980434 | Msa0108450:intron | 35.0% | |
| TCCCTGTTATTACAAGTAAC+TGG | - | chr1_3:19980420-19980439 | None:intergenic | 35.0% | |
| ATCAGGAAAAGAAGTGATTG+TGG | + | chr1_3:19980499-19980518 | Msa0108450:CDS | 35.0% | |
| !! | TGGTGAGTTGATTAATTAGG+TGG | - | chr1_3:19980769-19980788 | None:intergenic | 35.0% |
| GCACTGCTATTGAAAAACAA+TGG | - | chr1_3:19980789-19980808 | None:intergenic | 35.0% | |
| TGTACTAACGAGCAACAAAA+GGG | - | chr1_3:19981031-19981050 | None:intergenic | 35.0% | |
| TTGTACTAACGAGCAACAAA+AGG | - | chr1_3:19981032-19981051 | None:intergenic | 35.0% | |
| TTGCTTATGTCTTGTAATGG+AGG | + | chr1_3:19981163-19981182 | Msa0108450:intron | 35.0% | |
| ! | TGCTTATGTCTTGTAATGGA+GGG | + | chr1_3:19981164-19981183 | Msa0108450:intron | 35.0% |
| TCAATCGCAGAAAATAGTAG+CGG | - | chr1_3:19981243-19981262 | None:intergenic | 35.0% | |
| TGTGCAGAATCTTAAAAGAC+AGG | + | chr1_3:19981359-19981378 | Msa0108450:intron | 35.0% | |
| GGAACATAAGGGTTAGATAA+GGG | - | chr1_3:19981451-19981470 | None:intergenic | 35.0% | |
| AGGAACATAAGGGTTAGATA+AGG | - | chr1_3:19981452-19981471 | None:intergenic | 35.0% | |
| !!! | GAAGTTTGGTTTTTGAAGGT+AGG | - | chr1_3:19981472-19981491 | None:intergenic | 35.0% |
| TTAGGAGTGATAAGGAAGTT+TGG | - | chr1_3:19981486-19981505 | None:intergenic | 35.0% | |
| TCCTTATCACTCCTAATTAG+TGG | + | chr1_3:19981490-19981509 | Msa0108450:intron | 35.0% | |
| TCCACTAATTAGGAGTGATA+AGG | - | chr1_3:19981494-19981513 | None:intergenic | 35.0% | |
| GATGACTTACTCTATTGTGA+TGG | + | chr1_3:19981616-19981635 | Msa0108450:intron | 35.0% | |
| TCGCAGAAAACAAGGAAATA+TGG | - | chr1_3:19981702-19981721 | None:intergenic | 35.0% | |
| AATATGGATCGCAGAAAACA+AGG | - | chr1_3:19981710-19981729 | None:intergenic | 35.0% | |
| !! | TTTTAGTTGCTGTGGATTGA+TGG | - | chr1_3:19981762-19981781 | None:intergenic | 35.0% |
| AATGAATTCAAAACCATGGG+GGG | + | chr1_3:19981808-19981827 | Msa0108450:intron | 35.0% | |
| GTTCTATTGAGAATACAAGG+AGG | + | chr1_3:19982403-19982422 | Msa0108450:CDS | 35.0% | |
| TCTATTGAGAATACAAGGAG+GGG | + | chr1_3:19982405-19982424 | Msa0108450:CDS | 35.0% | |
| !!! | GATTTTTTTGGCTAGAGGAA+AGG | + | chr1_3:19982577-19982596 | Msa0108450:three_prime_UTR | 35.0% |
| ! | AAGACTTGGTCTGATATCTT+TGG | - | chr1_3:19982622-19982641 | None:intergenic | 35.0% |
| AAACGTGTGTTGGAAGTAGA+AGG | - | chr1_3:19977117-19977136 | None:intergenic | 40.0% | |
| TACTTCTTCTTGGACACCAT+TGG | + | chr1_3:19977167-19977186 | Msa0108450:CDS | 40.0% | |
| TTGTTACCAGTATCCTCCAA+TGG | - | chr1_3:19977186-19977205 | None:intergenic | 40.0% | |
| GATATGGACAAAGAACAAGC+AGG | + | chr1_3:19977224-19977243 | Msa0108450:CDS | 40.0% | |
| ! | AATCATTGGCAAGTTGAGGA+AGG | - | chr1_3:19977302-19977321 | None:intergenic | 40.0% |
| TTCCTCAACTTGCCAATGAT+TGG | + | chr1_3:19977301-19977320 | Msa0108450:CDS | 40.0% | |
| ATTTCGCAATTAGGAGGCTA+GGG | - | chr1_3:19977492-19977511 | None:intergenic | 40.0% | |
| AATTTCGCAATTAGGAGGCT+AGG | - | chr1_3:19977493-19977512 | None:intergenic | 40.0% | |
| TCCAACACCTTCACTATGTT+GGG | + | chr1_3:19977534-19977553 | Msa0108450:intron | 40.0% | |
| CACGTCATATCTATAGGCAA+TGG | - | chr1_3:19977582-19977601 | None:intergenic | 40.0% | |
| CGTGTAGTGTTTGTAAAGCT+TGG | + | chr1_3:19977598-19977617 | Msa0108450:intron | 40.0% | |
| !! | CGGTTTTGTATGGTTGAGTT+AGG | + | chr1_3:19977641-19977660 | Msa0108450:intron | 40.0% |
| AGCCTAAAGTATGGACAATG+CGG | - | chr1_3:19977721-19977740 | None:intergenic | 40.0% | |
| TGTCCATACTTTAGGCTCAT+TGG | + | chr1_3:19977724-19977743 | Msa0108450:intron | 40.0% | |
| GAACCAATGAGCCTAAAGTA+TGG | - | chr1_3:19977730-19977749 | None:intergenic | 40.0% | |
| AACCAGTGCAGAGATTATGA+AGG | - | chr1_3:19977830-19977849 | None:intergenic | 40.0% | |
| TTTAGGAGAGGAGGAACAAT+TGG | + | chr1_3:19977943-19977962 | Msa0108450:intron | 40.0% | |
| ! | TCCTCTTTTTGCTAGTGAGA+AGG | + | chr1_3:19978425-19978444 | Msa0108450:CDS | 40.0% |
| TCCTTCTCACTAGCAAAAAG+AGG | - | chr1_3:19978429-19978448 | None:intergenic | 40.0% | |
| !! | TTCCTTGTTATTTGCCGAAC+CGG | - | chr1_3:19978762-19978781 | None:intergenic | 40.0% |
| CTTAAAGATGGCAAATGCTG+GGG | - | chr1_3:19978981-19979000 | None:intergenic | 40.0% | |
| CCTTAAAGATGGCAAATGCT+GGG | - | chr1_3:19978982-19979001 | None:intergenic | 40.0% | |
| TCCTTAAAGATGGCAAATGC+TGG | - | chr1_3:19978983-19979002 | None:intergenic | 40.0% | |
| CAGAATAATCAACGGATGAC+AGG | - | chr1_3:19979021-19979040 | None:intergenic | 40.0% | |
| CTCATCTTCCCTCAGAAAAT+TGG | - | chr1_3:19979217-19979236 | None:intergenic | 40.0% | |
| TTGTACACAATTGCTCACTC+AGG | + | chr1_3:19979354-19979373 | Msa0108450:intron | 40.0% | |
| TTCGGATGCATTATCAGAGA+TGG | - | chr1_3:19979437-19979456 | None:intergenic | 40.0% | |
| CTCAAGAAATGTCTGAGCTT+CGG | - | chr1_3:19979455-19979474 | None:intergenic | 40.0% | |
| TGAGCCTATTCTTGAGCTTA+AGG | + | chr1_3:19979617-19979636 | Msa0108450:CDS | 40.0% | |
| ACTCAAGAAGCTTCAAATGG+AGG | - | chr1_3:19979651-19979670 | None:intergenic | 40.0% | |
| AATTTGTGTCACAGTGGCTT+TGG | - | chr1_3:19979760-19979779 | None:intergenic | 40.0% | |
| !! | GTGACACAAATTCAAGTTGC+TGG | + | chr1_3:19979768-19979787 | Msa0108450:CDS | 40.0% |
| !! | AATTCAAGTTGCTGGAATGG+GGG | + | chr1_3:19979776-19979795 | Msa0108450:CDS | 40.0% |
| ! | ACATTGCAAGCAGACCTTTT+CGG | + | chr1_3:19979984-19980003 | Msa0108450:CDS | 40.0% |
| AGTTTGAGCCAGAGAATTGA+AGG | - | chr1_3:19980029-19980048 | None:intergenic | 40.0% | |
| ! | TGAGCCATGAAAGACTAGTT+TGG | - | chr1_3:19980301-19980320 | None:intergenic | 40.0% |
| AGTGATTGTGGTTGATCAAC+AGG | + | chr1_3:19980511-19980530 | Msa0108450:CDS | 40.0% | |
| GTGATTGTGGTTGATCAACA+GGG | + | chr1_3:19980512-19980531 | Msa0108450:CDS | 40.0% | |
| CGGCAAAGAATTGCAATTGT+TGG | + | chr1_3:19980536-19980555 | Msa0108450:CDS | 40.0% | |
| AAGTAGACCACTAATCCTTG+TGG | + | chr1_3:19980574-19980593 | Msa0108450:intron | 40.0% | |
| GATACTTAGTATGAGACGGA+TGG | - | chr1_3:19980647-19980666 | None:intergenic | 40.0% | |
| !! | GGTGGATTGAGATACAAGAA+GGG | - | chr1_3:19980751-19980770 | None:intergenic | 40.0% |
| !! | AGGTGGATTGAGATACAAGA+AGG | - | chr1_3:19980752-19980771 | None:intergenic | 40.0% |
| ATAGCAGTGCTATAGTAGAG+CGG | + | chr1_3:19980799-19980818 | Msa0108450:intron | 40.0% | |
| ATAGCGGCGTTATAAAGTAG+CGG | + | chr1_3:19980992-19981011 | Msa0108450:intron | 40.0% | |
| AAGGGTTAGATAAGGGATTG+TGG | - | chr1_3:19981444-19981463 | None:intergenic | 40.0% | |
| GACTTACTCTATTGTGATGG+TGG | + | chr1_3:19981619-19981638 | Msa0108450:intron | 40.0% | |
| TGTTGTCTGTTTCCCTATTC+AGG | + | chr1_3:19982325-19982344 | Msa0108450:intron | 40.0% | |
| ! | CCAACTTTTAGTGATGTCAC+TGG | - | chr1_3:19982376-19982395 | None:intergenic | 40.0% |
| CCAGTGACATCACTAAAAGT+TGG | + | chr1_3:19982373-19982392 | Msa0108450:CDS | 40.0% | |
| CTCTAGCATCAAAGTTGCAA+AGG | - | chr1_3:19982549-19982568 | None:intergenic | 40.0% | |
| TTGCAACTTTGATGCTAGAG+TGG | + | chr1_3:19982549-19982568 | Msa0108450:intron | 40.0% | |
| GGAAAGGAGCAGCTTATATT+TGG | + | chr1_3:19982593-19982612 | Msa0108450:three_prime_UTR | 40.0% | |
| GGAATTGTGAAAAGTCCAGT+TGG | + | chr1_3:19982696-19982715 | Msa0108450:three_prime_UTR | 40.0% | |
| GGCAAAAGATGCTTCACTTT+AGG | + | chr1_3:19982717-19982736 | Msa0108450:three_prime_UTR | 40.0% | |
| TTCTTCTTGGACACCATTGG+AGG | + | chr1_3:19977170-19977189 | Msa0108450:CDS | 45.0% | |
| ATGACTGCAGCTGTTGAAAG+AGG | + | chr1_3:19977249-19977268 | Msa0108450:CDS | 45.0% | |
| ! | CAAGTTGAGGAAGGTGAGAT+GGG | - | chr1_3:19977293-19977312 | None:intergenic | 45.0% |
| GACCAATCATTGGCAAGTTG+AGG | - | chr1_3:19977306-19977325 | None:intergenic | 45.0% | |
| TTTCGCAATTAGGAGGCTAG+GGG | - | chr1_3:19977491-19977510 | None:intergenic | 45.0% | |
| ! | GGTGTTGGAGGTTACAATGA+AGG | - | chr1_3:19977523-19977542 | None:intergenic | 45.0% |
| !! | CAACATAGTGAAGGTGTTGG+AGG | - | chr1_3:19977535-19977554 | None:intergenic | 45.0% |
| CTCCAACACCTTCACTATGT+TGG | + | chr1_3:19977533-19977552 | Msa0108450:intron | 45.0% | |
| CCAACACCTTCACTATGTTG+GGG | + | chr1_3:19977535-19977554 | Msa0108450:intron | 45.0% | |
| CAACACCTTCACTATGTTGG+GGG | + | chr1_3:19977536-19977555 | Msa0108450:intron | 45.0% | |
| !! | CCATACAAAACCGGCTTGTA+TGG | - | chr1_3:19977634-19977653 | None:intergenic | 45.0% |
| !! | CCATACAAGCCGGTTTTGTA+TGG | + | chr1_3:19977631-19977650 | Msa0108450:intron | 45.0% |
| TCCCGCATTGTCCATACTTT+AGG | + | chr1_3:19977716-19977735 | Msa0108450:intron | 45.0% | |
| GCCTAAAGTATGGACAATGC+GGG | - | chr1_3:19977720-19977739 | None:intergenic | 45.0% | |
| TTCCTGATAAGGAGGCTAGA+GGG | - | chr1_3:19977797-19977816 | None:intergenic | 45.0% | |
| AGCCTCCTTATCAGGAACAT+TGG | + | chr1_3:19977800-19977819 | Msa0108450:intron | 45.0% | |
| GACCAATGTTCCTGATAAGG+AGG | - | chr1_3:19977805-19977824 | None:intergenic | 45.0% | |
| GAGGACCAATGTTCCTGATA+AGG | - | chr1_3:19977808-19977827 | None:intergenic | 45.0% | |
| CAGTGCAGAGATTATGAAGG+AGG | - | chr1_3:19977827-19977846 | None:intergenic | 45.0% | |
| CTCCTTCATAATCTCTGCAC+TGG | + | chr1_3:19977825-19977844 | Msa0108450:intron | 45.0% | |
| AAGAGGACAGATGACTGCAA+TGG | - | chr1_3:19978412-19978431 | None:intergenic | 45.0% | |
| !! | CTAAGTCGTTCTAGTTCCTC+CGG | - | chr1_3:19978504-19978523 | None:intergenic | 45.0% |
| ACTAGAACGACTTAGACCTG+AGG | + | chr1_3:19978509-19978528 | Msa0108450:CDS | 45.0% | |
| ! | TTTTCTGCTTGCTCATCCTC+AGG | - | chr1_3:19978528-19978547 | None:intergenic | 45.0% |
| GTCTCATATAGTCCTTACGG+TGG | + | chr1_3:19978631-19978650 | Msa0108450:intron | 45.0% | |
| !! | GGGTTGATGTTTCAGTTGTG+AGG | - | chr1_3:19978731-19978750 | None:intergenic | 45.0% |
| AACATCAACCCAATCTGTGC+CGG | + | chr1_3:19978740-19978759 | Msa0108450:intron | 45.0% | |
| ! | TTTTCTCACCCGTAAGGATG+TGG | + | chr1_3:19978857-19978876 | Msa0108450:intron | 45.0% |
| CACCTTTAAGCAGAAGTCCA+GGG | - | chr1_3:19978887-19978906 | None:intergenic | 45.0% | |
| ACTTCTGCTTAAAGGTGGTG+AGG | + | chr1_3:19978890-19978909 | Msa0108450:intron | 45.0% | |
| CCCAGCATTTGCCATCTTTA+AGG | + | chr1_3:19978979-19978998 | Msa0108450:intron | 45.0% | |
| CGAAGCTCAGACATTTCTTG+AGG | + | chr1_3:19979453-19979472 | Msa0108450:CDS | 45.0% | |
| !! | TTAGTAGGGGTGTTACAGGT+CGG | + | chr1_3:19979486-19979505 | Msa0108450:intron | 45.0% |
| GCACTTGAACATGGCTTAGA+TGG | + | chr1_3:19979570-19979589 | Msa0108450:CDS | 45.0% | |
| ! | AGTCTTATGAGACCTGGTGA+AGG | + | chr1_3:19979822-19979841 | Msa0108450:CDS | 45.0% |
| ! | TAGGTTGGATCCTTTGCTAG+AGG | + | chr1_3:19979923-19979942 | Msa0108450:intron | 45.0% |
| ! | CATTGCAAGCAGACCTTTTC+GGG | + | chr1_3:19979985-19980004 | Msa0108450:CDS | 45.0% |
| AAGTTGCGCCTTCAATTCTC+TGG | + | chr1_3:19980018-19980037 | Msa0108450:intron | 45.0% | |
| CTCTACTCTCTCTACTTCCT+TGG | + | chr1_3:19980332-19980351 | Msa0108450:intron | 45.0% | |
| TTGTGGTTGATCAACAGGGT+CGG | + | chr1_3:19980516-19980535 | Msa0108450:CDS | 45.0% | |
| TAGACCACTAATCCTTGTGG+AGG | + | chr1_3:19980577-19980596 | Msa0108450:intron | 45.0% | |
| TTTGCCTCCACAAGGATTAG+TGG | - | chr1_3:19980584-19980603 | None:intergenic | 45.0% | |
| ACTAATCCTTGTGGAGGCAA+AGG | + | chr1_3:19980583-19980602 | Msa0108450:intron | 45.0% | |
| AATGGAGGGAGTAGCAGTAA+TGG | + | chr1_3:19981178-19981197 | Msa0108450:intron | 45.0% | |
| AGACAGGTAATATGAGAGGG+AGG | + | chr1_3:19981375-19981394 | Msa0108450:intron | 45.0% | |
| GGGGACATCTACCAAATCAA+TGG | + | chr1_3:19981827-19981846 | Msa0108450:intron | 45.0% | |
| !! | GCTTTAGTTTGTCCCGTACA+AGG | + | chr1_3:19982254-19982273 | Msa0108450:CDS | 45.0% |
| !! | GTGAAGCATCTTTTGCCAAC+TGG | - | chr1_3:19982714-19982733 | None:intergenic | 45.0% |
| !!! | TAAAAAAATAATATTTTCTT+TGG | - | chr1_3:19978038-19978057 | None:intergenic | 5.0% |
| !!! | AATTATAATTTTATGATATT+TGG | + | chr1_3:19978362-19978381 | Msa0108450:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTGATAT+AGG | - | chr1_3:19981893-19981912 | None:intergenic | 5.0% |
| GTGTTGGAAGTAGAAGGTGG+TGG | - | chr1_3:19977111-19977130 | None:intergenic | 50.0% | |
| CGTGTGTTGGAAGTAGAAGG+TGG | - | chr1_3:19977114-19977133 | None:intergenic | 50.0% | |
| GTTGTGACGCAAACGTGTGT+TGG | - | chr1_3:19977127-19977146 | None:intergenic | 50.0% | |
| TGGACACCATTGGAGGATAC+TGG | + | chr1_3:19977177-19977196 | Msa0108450:CDS | 50.0% | |
| CTGCAGCTGTTGAAAGAGGA+TGG | + | chr1_3:19977253-19977272 | Msa0108450:CDS | 50.0% | |
| ! | GCAAGTTGAGGAAGGTGAGA+TGG | - | chr1_3:19977294-19977313 | None:intergenic | 50.0% |
| ! | CCCCAACATAGTGAAGGTGT+TGG | - | chr1_3:19977538-19977557 | None:intergenic | 50.0% |
| TTCACTATGTTGGGGGCGAA+GGG | + | chr1_3:19977543-19977562 | Msa0108450:intron | 50.0% | |
| TCCTGATAAGGAGGCTAGAG+GGG | - | chr1_3:19977796-19977815 | None:intergenic | 50.0% | |
| GTTCCTGATAAGGAGGCTAG+AGG | - | chr1_3:19977798-19977817 | None:intergenic | 50.0% | |
| ! | GACAACTATCCAAGGGGTGT+GGG | - | chr1_3:19977869-19977888 | None:intergenic | 50.0% |
| TGACAACTATCCAAGGGGTG+TGG | - | chr1_3:19977870-19977889 | None:intergenic | 50.0% | |
| GCAATGGCTGTACTCCATCA+TGG | - | chr1_3:19978396-19978415 | None:intergenic | 50.0% | |
| ! | TTTTGACGTTTCGACACCGG+AGG | + | chr1_3:19978485-19978504 | Msa0108450:CDS | 50.0% |
| !! | TCAAGCATTGGTCCACCGTA+AGG | - | chr1_3:19978646-19978665 | None:intergenic | 50.0% |
| !! | TGCCGGTTCGGCAAATAACA+AGG | + | chr1_3:19978757-19978776 | Msa0108450:intron | 50.0% |
| GACCCTGGACTTCTGCTTAA+AGG | + | chr1_3:19978882-19978901 | Msa0108450:intron | 50.0% | |
| CCACCTTTAAGCAGAAGTCC+AGG | - | chr1_3:19978888-19978907 | None:intergenic | 50.0% | |
| CCTGGACTTCTGCTTAAAGG+TGG | + | chr1_3:19978885-19978904 | Msa0108450:intron | 50.0% | |
| CTGCTTAAAGGTGGTGAGGT+CGG | + | chr1_3:19978894-19978913 | Msa0108450:intron | 50.0% | |
| GGTGAGTCACATGTGGTCTA+CGG | - | chr1_3:19978960-19978979 | None:intergenic | 50.0% | |
| ! | CTCTGCAGTCTTATGAGACC+TGG | + | chr1_3:19979816-19979835 | Msa0108450:CDS | 50.0% |
| CATACGAGAAGTCCTTCACC+AGG | - | chr1_3:19979837-19979856 | None:intergenic | 50.0% | |
| !!! | CAGACCTTTTCGGGTGAATG+CGG | + | chr1_3:19979994-19980013 | Msa0108450:CDS | 50.0% |
| CTTACCGCATTCACCCGAAA+AGG | - | chr1_3:19980001-19980020 | None:intergenic | 50.0% | |
| ACAGCAATGTAGGCGTGAAC+TGG | - | chr1_3:19980443-19980462 | None:intergenic | 50.0% | |
| CACAAACCTTTGCCTCCACA+AGG | - | chr1_3:19980592-19980611 | None:intergenic | 50.0% | |
| ATTTGGTAGATGTCCCCCCA+TGG | - | chr1_3:19981824-19981843 | None:intergenic | 50.0% | |
| CTTCGCCCCCAACATAGTGA+AGG | - | chr1_3:19977544-19977563 | None:intergenic | 55.0% | |
| CTTCACTATGTTGGGGGCGA+AGG | + | chr1_3:19977542-19977561 | Msa0108450:intron | 55.0% | |
| GCAGCTCTCACCATACAAGC+CGG | + | chr1_3:19977621-19977640 | Msa0108450:intron | 55.0% | |
| AGAGCCTGAAGCCCTCTTGT+TGG | + | chr1_3:19977690-19977709 | Msa0108450:intron | 55.0% | |
| GAGCCTGAAGCCCTCTTGTT+GGG | + | chr1_3:19977691-19977710 | Msa0108450:intron | 55.0% | |
| ATGCCCAACAAGAGGGCTTC+AGG | - | chr1_3:19977697-19977716 | None:intergenic | 55.0% | |
| ATGCGGGATGCCCAACAAGA+GGG | - | chr1_3:19977704-19977723 | None:intergenic | 55.0% | |
| AATGCGGGATGCCCAACAAG+AGG | - | chr1_3:19977705-19977724 | None:intergenic | 55.0% | |
| !! | GCTCATTGGTTCGAGCGTGA+GGG | + | chr1_3:19977738-19977757 | Msa0108450:intron | 55.0% |
| !! | CTCATTGGTTCGAGCGTGAG+GGG | + | chr1_3:19977739-19977758 | Msa0108450:intron | 55.0% |
| !! | TCATTGGTTCGAGCGTGAGG+GGG | + | chr1_3:19977740-19977759 | Msa0108450:intron | 55.0% |
| CCTGATAAGGAGGCTAGAGG+GGG | - | chr1_3:19977795-19977814 | None:intergenic | 55.0% | |
| !! | CAACCCAATCTGTGCCGGTT+CGG | + | chr1_3:19978745-19978764 | Msa0108450:intron | 55.0% |
| TTGCCGAACCGGCACAGATT+GGG | - | chr1_3:19978751-19978770 | None:intergenic | 55.0% | |
| TTTGCCGAACCGGCACAGAT+TGG | - | chr1_3:19978752-19978771 | None:intergenic | 55.0% | |
| TCTCACCCGTAAGGATGTGG+TGG | + | chr1_3:19978860-19978879 | Msa0108450:intron | 55.0% | |
| AGGGTCCACCACATCCTTAC+GGG | - | chr1_3:19978868-19978887 | None:intergenic | 55.0% | |
| CAGGGTCCACCACATCCTTA+CGG | - | chr1_3:19978869-19978888 | None:intergenic | 55.0% | |
| GAGTCACATGTGGTCTACGG+TGG | - | chr1_3:19978957-19978976 | None:intergenic | 55.0% | |
| ATGCTGGGGTGAGTCACATG+TGG | - | chr1_3:19978967-19978986 | None:intergenic | 55.0% | |
| !! | AGGGGTGTTACAGGTCGGTT+TGG | + | chr1_3:19979491-19979510 | Msa0108450:intron | 55.0% |
| ! | CACGCCTACATTGCTGTTCC+AGG | + | chr1_3:19980446-19980465 | Msa0108450:CDS | 55.0% |
| ! | GCCTACATTGCTGTTCCAGG+CGG | + | chr1_3:19980449-19980468 | Msa0108450:CDS | 55.0% |
| ACCGCCTGGAACAGCAATGT+AGG | - | chr1_3:19980453-19980472 | None:intergenic | 55.0% | |
| AGGTAGGATGTTCTACCGCC+TGG | - | chr1_3:19980467-19980486 | None:intergenic | 55.0% | |
| !! | GGCTCATTGGTTCGAGCGTG+AGG | + | chr1_3:19977737-19977756 | Msa0108450:intron | 60.0% |
| CCCCCTCTAGCCTCCTTATC+AGG | + | chr1_3:19977792-19977811 | Msa0108450:intron | 60.0% | |
| ! | CTATCCAAGGGGTGTGGGTG+TGG | - | chr1_3:19977864-19977883 | None:intergenic | 60.0% |
| !! | CGTAAGGATGTGGTGGACCC+TGG | + | chr1_3:19978867-19978886 | Msa0108450:intron | 60.0% |
| CAAGGAGGGGCTCGACATAC+CGG | + | chr1_3:19982418-19982437 | Msa0108450:CDS | 60.0% | |
| TGAGCCACACCCACACCCCT+TGG | + | chr1_3:19977857-19977876 | Msa0108450:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 19977041 | 19982808 | 19977041 | ID=Msa0108450;Name=Msa0108450 |
| chr1_3 | mRNA | 19977041 | 19982808 | 19977041 | ID=Msa0108450-mRNA-1;Parent=Msa0108450;Name=Msa0108450-mRNA-1;_AED=0.22;_eAED=0.22;_QI=28|0.77|0.8|1|0.88|0.8|10|247|377 |
| chr1_3 | exon | 19977041 | 19977327 | 19977041 | ID=Msa0108450-mRNA-1:exon:7178;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19978409 | 19978554 | 19978409 | ID=Msa0108450-mRNA-1:exon:7179;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19979376 | 19979474 | 19979376 | ID=Msa0108450-mRNA-1:exon:7180;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19979570 | 19979638 | 19979570 | ID=Msa0108450-mRNA-1:exon:7181;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19979711 | 19979851 | 19979711 | ID=Msa0108450-mRNA-1:exon:7182;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19979926 | 19980015 | 19979926 | ID=Msa0108450-mRNA-1:exon:7183;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19980437 | 19980562 | 19980437 | ID=Msa0108450-mRNA-1:exon:7184;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19982200 | 19982275 | 19982200 | ID=Msa0108450-mRNA-1:exon:7185;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19982347 | 19982479 | 19982347 | ID=Msa0108450-mRNA-1:exon:7186;Parent=Msa0108450-mRNA-1 |
| chr1_3 | exon | 19982567 | 19982808 | 19982567 | ID=Msa0108450-mRNA-1:exon:7187;Parent=Msa0108450-mRNA-1 |
| chr1_3 | five_prime_UTR | 19977041 | 19977068 | 19977041 | ID=Msa0108450-mRNA-1:five_prime_utr;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19977069 | 19977327 | 19977069 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19978409 | 19978554 | 19978409 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19979376 | 19979474 | 19979376 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19979570 | 19979638 | 19979570 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19979711 | 19979851 | 19979711 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19979926 | 19980015 | 19979926 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19980437 | 19980562 | 19980437 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19982200 | 19982275 | 19982200 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | CDS | 19982347 | 19982474 | 19982347 | ID=Msa0108450-mRNA-1:cds;Parent=Msa0108450-mRNA-1 |
| chr1_3 | three_prime_UTR | 19982475 | 19982479 | 19982475 | ID=Msa0108450-mRNA-1:three_prime_utr;Parent=Msa0108450-mRNA-1 |
| chr1_3 | three_prime_UTR | 19982567 | 19982808 | 19982567 | ID=Msa0108450-mRNA-1:three_prime_utr;Parent=Msa0108450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
