AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1229690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1229690 MtrunA17_Chr8g0337231 90.794 315 28 1 1 314 1 315 0.0 574
Msa1229690 MtrunA17_Chr8g0337241 83.333 282 44 2 35 316 2 280 2.44e-165 461
Msa1229690 MtrunA17_Chr6g0457691 42.347 196 104 4 119 313 538 725 3.84e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1229690 AT5G17660.1 65.306 245 77 3 75 316 69 308 3.47e-120 348
Msa1229690 AT5G24840.1 28.512 242 128 11 99 313 23 246 5.95e-12 65.1

Find 84 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTGTAATTTA+AGG 0.065136 8_2:+5602752 Msa1229690:three_prime_UTR
ACCTAAAGTGAGAAATTATT+TGG 0.126545 8_2:+5601427 Msa1229690:CDS
CTTGCAGTTAGTTTCAATTT+TGG 0.187587 8_2:+5601808 Msa1229690:CDS
CCCAAATAATTTCTCACTTT+AGG 0.263184 8_2:-5601428 None:intergenic
TCAATCACATCTGCTTCTTT+TGG 0.314148 8_2:-5602541 None:intergenic
GGTCTTGTTCAGCTGTTACT+TGG 0.321900 8_2:-5599394 None:intergenic
TAAGCAACCCTATGGGGATT+AGG 0.323830 8_2:+5602462 Msa1229690:CDS
ATTATTTGGGATTGGAAATA+CGG 0.335361 8_2:+5601441 Msa1229690:CDS
CTGCCACTCATGGTGGATAT+TGG 0.351376 8_2:+5600835 Msa1229690:CDS
TCACTGTCACACAATATAGA+AGG 0.376117 8_2:-5602428 None:intergenic
ACCAACTGCTTGAAAGAAAT+AGG 0.378434 8_2:-5601767 None:intergenic
TTGAAGAGAAAGAGGGGAGA+TGG 0.381038 8_2:+5599199 Msa1229690:exon
CGTCACAAGAAGTTAGTATA+TGG 0.384046 8_2:+5599263 Msa1229690:CDS
AGAAAAGTATGCATTCTCTT+AGG 0.387543 8_2:+5602656 Msa1229690:three_prime_UTR
TTTGTCAAATTTCAGGATAT+GGG 0.389407 8_2:+5599560 Msa1229690:intron
TACAGAGAAAGAAGAACTTA+AGG 0.390216 8_2:-5599612 None:intergenic
AGTGAGAAATTATTTGGGAT+TGG 0.396847 8_2:+5601433 Msa1229690:CDS
GTTGTGACTTATGTTGTTGT+TGG 0.400793 8_2:-5599415 None:intergenic
CCTAAAGTGAGAAATTATTT+GGG 0.400944 8_2:+5601428 Msa1229690:CDS
GAAGAAGAGAGAGGACGAAA+GGG 0.402215 8_2:-5599332 None:intergenic
TGAAGAGAAAGAGGGGAGAT+GGG 0.411116 8_2:+5599200 Msa1229690:exon
GTGCATCAACTTCATCAAAC+TGG 0.411217 8_2:-5602382 None:intergenic
GTCTTGTTCAGCTGTTACTT+GGG 0.430566 8_2:-5599393 None:intergenic
TGGTGAAGCGTGCTGAGTTA+TGG 0.441715 8_2:+5601597 Msa1229690:CDS
ATTGTAGATAATTTATCTCC+TGG 0.443117 8_2:+5602180 Msa1229690:CDS
ACCTATTTCTTTCAAGCAGT+TGG 0.457053 8_2:+5601766 Msa1229690:CDS
GGTGAAGCGTGCTGAGTTAT+GGG 0.461581 8_2:+5601598 Msa1229690:CDS
TCCACCATGAGTGGCAGAGC+AGG 0.463070 8_2:-5600829 None:intergenic
AGCTGTTACTTGGGAAATAG+AGG 0.464400 8_2:-5599384 None:intergenic
AGAAGAAGAGAGAGGACGAA+AGG 0.467431 8_2:-5599333 None:intergenic
TTGTAGATAATTTATCTCCT+GGG 0.470027 8_2:+5602181 Msa1229690:CDS
TTCCAGTCTGGTACTGGTGC+AGG 0.472779 8_2:-5600790 None:intergenic
CCAGTGGGTTGAAGAGAAAG+AGG 0.474783 8_2:+5599191 None:intergenic
ACAGAGAAAGAAGAACTTAA+GGG 0.478265 8_2:-5599611 None:intergenic
GGGATTGGAAATACGGCAAA+GGG 0.483148 8_2:+5601448 Msa1229690:CDS
AGACCCTGCTCTGCCACTCA+TGG 0.484179 8_2:+5600825 Msa1229690:CDS
ACCTGGTTCCAGTCTGGTAC+TGG 0.484249 8_2:-5600796 None:intergenic
CTCTCAGTCCTAATCCCCAT+AGG 0.490442 8_2:-5602470 None:intergenic
ATGGTTATTAAGCAACCCTA+TGG 0.492202 8_2:+5602454 Msa1229690:CDS
TGAGTTATGGGTAAAAGATC+TGG 0.497316 8_2:+5601610 Msa1229690:CDS
GAAACTAACTGCAAGGGTCC+AGG 0.506605 8_2:-5601800 None:intergenic
GCAAACACCTGGTTCCAGTC+TGG 0.508336 8_2:-5600802 None:intergenic
GAAATAGAGGAAGAGGAGAG+TGG 0.516991 8_2:-5599371 None:intergenic
TACTTGGGAAATAGAGGAAG+AGG 0.521735 8_2:-5599378 None:intergenic
ATAAAATGTCTGCAATGGAC+AGG 0.522666 8_2:-5602585 None:intergenic
GCAGTGGTAGGTTTCTTATG+TGG 0.523016 8_2:+5601390 Msa1229690:CDS
TGGGTTATTGCTGTGGAGGT+TGG 0.525110 8_2:+5599219 Msa1229690:CDS
CAGTTGGTAGAATCATATCC+TGG 0.532880 8_2:+5601782 Msa1229690:CDS
GAGATGGGTTATTGCTGTGG+AGG 0.533144 8_2:+5599215 Msa1229690:exon
TGGTTATTAAGCAACCCTAT+GGG 0.534053 8_2:+5602455 Msa1229690:CDS
CTCCTGCACCAGTACCAGAC+TGG 0.539916 8_2:+5600788 Msa1229690:CDS
GGTGAAAATGAGAGTGAGAG+TGG 0.548892 8_2:-5599311 None:intergenic
ACTCAATCTCTCTAACAACT+TGG 0.549026 8_2:+5599475 Msa1229690:CDS
TCTCAGTCCTAATCCCCATA+GGG 0.549156 8_2:-5602469 None:intergenic
CAAAATTGAAACTAACTGCA+AGG 0.551890 8_2:-5601807 None:intergenic
CAGTGGGTTGAAGAGAAAGA+GGG 0.553760 8_2:+5599192 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 8_2:+5601616 Msa1229690:CDS
ACACTATAAAATGTCTGCAA+TGG 0.555855 8_2:-5602590 None:intergenic
TGTAGATAATTTATCTCCTG+GGG 0.562130 8_2:+5602182 Msa1229690:CDS
AAATAATGACAGGCAGTGGT+AGG 0.578508 8_2:+5601378 Msa1229690:intron
TGGGATTGGAAATACGGCAA+AGG 0.583272 8_2:+5601447 Msa1229690:CDS
GAGCAGGGTCTGCAAACACC+TGG 0.584261 8_2:-5600813 None:intergenic
GGGGAGATGGGTTATTGCTG+TGG 0.588504 8_2:+5599212 Msa1229690:exon
CATTCTCTTAGGATGCCTAC+CGG 0.595714 8_2:+5602667 Msa1229690:three_prime_UTR
CACTGTCACACAATATAGAA+GGG 0.596542 8_2:-5602427 None:intergenic
ACCAGTACCAGACTGGAACC+AGG 0.600428 8_2:+5600795 Msa1229690:CDS
ATATGTTCAACATCAACCAC+AGG 0.611589 8_2:+5602633 Msa1229690:three_prime_UTR
CTCATGGTGGATATTGGATG+TGG 0.615858 8_2:+5600841 Msa1229690:CDS
TTCATGCAGAATTCGAAGGA+GGG 0.618770 8_2:+5602498 Msa1229690:CDS
GAGATTCATGCAGAATTCGA+AGG 0.619717 8_2:+5602494 Msa1229690:CDS
AAAATTGAAACTAACTGCAA+GGG 0.620397 8_2:-5601806 None:intergenic
CCCTGCTCTGCCACTCATGG+TGG 0.621197 8_2:+5600828 Msa1229690:CDS
AAGGAGGGAAAATCTATCGA+AGG 0.623652 8_2:+5602513 Msa1229690:CDS
CCACCATGAGTGGCAGAGCA+GGG 0.630245 8_2:-5600828 None:intergenic
ATTCATGCAGAATTCGAAGG+AGG 0.630607 8_2:+5602497 Msa1229690:CDS
AGTGGGTTGAAGAGAAAGAG+GGG 0.635750 8_2:+5599193 None:intergenic
GGTTATTAAGCAACCCTATG+GGG 0.641395 8_2:+5602456 Msa1229690:CDS
ACAGTCTGATGTGGTTGAAG+TGG 0.648166 8_2:+5602343 Msa1229690:CDS
CATCCAATATCCACCATGAG+TGG 0.650715 8_2:-5600838 None:intergenic
GGTATTTGTACAGTCTGATG+TGG 0.665592 8_2:+5602334 Msa1229690:intron
TCTACAATAGCACCAACCAA+AGG 0.670279 8_2:-5602165 None:intergenic
TCTATATTGTGTGACAGTGA+AGG 0.673502 8_2:+5602431 Msa1229690:CDS
TATTGTGTGACAGTGAAGGA+TGG 0.681117 8_2:+5602435 Msa1229690:CDS
GTAGATAATTTATCTCCTGG+GGG 0.693547 8_2:+5602183 Msa1229690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATGATATTTTTAT+AGG + chr8_2:5600096-5600115 Msa1229690:intron 10.0%
!!! TAATATTTTCAGTTTAAAGT+GGG - chr8_2:5599524-5599543 None:intergenic 15.0%
!!! ATAATATTTTCAGTTTAAAG+TGG - chr8_2:5599525-5599544 None:intergenic 15.0%
!! AATAAGAATAAACTACTAAA+GGG - chr8_2:5599675-5599694 None:intergenic 15.0%
!! TATAAAACAGTTTAATACAA+TGG + chr8_2:5599725-5599744 Msa1229690:intron 15.0%
!!! TATCATTTTTTTGTTTGTTT+TGG - chr8_2:5600089-5600108 None:intergenic 15.0%
!! AACATATAACTTATAATGAA+TGG - chr8_2:5600140-5600159 None:intergenic 15.0%
!! TTCATTATAAGTTATATGTT+AGG + chr8_2:5600140-5600159 Msa1229690:intron 15.0%
!! AAAACGTAAAATAAACATAA+GGG - chr8_2:5600167-5600186 None:intergenic 15.0%
!! TAAAACGTAAAATAAACATA+AGG - chr8_2:5600168-5600187 None:intergenic 15.0%
!!! ACTTGAACATTTTAAATATA+GGG - chr8_2:5600199-5600218 None:intergenic 15.0%
!!! AACTTGAACATTTTAAATAT+AGG - chr8_2:5600200-5600219 None:intergenic 15.0%
!!! TATATTTAAAATGTTCAAGT+TGG + chr8_2:5600199-5600218 Msa1229690:intron 15.0%
!!! TGGTTAAAATGTATATTTTT+TGG + chr8_2:5600520-5600539 Msa1229690:intron 15.0%
!! CTTGATATATAACATATTTA+TGG + chr8_2:5602226-5602245 Msa1229690:intron 15.0%
!! CAATATTTAGATAAAAATAC+CGG - chr8_2:5602689-5602708 None:intergenic 15.0%
!! ATAAGAATAAACTACTAAAG+GGG - chr8_2:5599674-5599693 None:intergenic 20.0%
!! GAATAAGAATAAACTACTAA+AGG - chr8_2:5599676-5599695 None:intergenic 20.0%
!! ACACCATTAATCAATTATAA+CGG - chr8_2:5599822-5599841 None:intergenic 20.0%
!! ATTAAACCTTATTCATTGTA+TGG + chr8_2:5599872-5599891 Msa1229690:intron 20.0%
!! ATTTAACCATACAATGAATA+AGG - chr8_2:5599881-5599900 None:intergenic 20.0%
!! ACAAAATTCGAGATAATTAA+AGG - chr8_2:5599916-5599935 None:intergenic 20.0%
!! CAAAATTACATGCTTTAATA+GGG - chr8_2:5599996-5600015 None:intergenic 20.0%
!! ACAAAATTACATGCTTTAAT+AGG - chr8_2:5599997-5600016 None:intergenic 20.0%
!! TAATTTGAAAGACTGATAAA+TGG + chr8_2:5600016-5600035 Msa1229690:intron 20.0%
!! AATTTGAAAGACTGATAAAT+GGG + chr8_2:5600017-5600036 Msa1229690:intron 20.0%
!!! AAGAAAATGTAACTTTTCTA+GGG + chr8_2:5600056-5600075 Msa1229690:intron 20.0%
!!! GTTTATTTTACGTTTTAAGT+CGG + chr8_2:5600171-5600190 Msa1229690:intron 20.0%
!!! CTTGAACATTTTAAATATAG+GGG - chr8_2:5600198-5600217 None:intergenic 20.0%
!!! CCTTTTATATAATATAGTGA+AGG - chr8_2:5600497-5600516 None:intergenic 20.0%
!! CCTTCACTATATTATATAAA+AGG + chr8_2:5600494-5600513 Msa1229690:intron 20.0%
!! CTATATTATATAAAAGGTTG+TGG + chr8_2:5600500-5600519 Msa1229690:intron 20.0%
!! GTTATCAAACTATATATATG+TGG - chr8_2:5600569-5600588 None:intergenic 20.0%
!!! ATCTCAATTTCATTGATAAT+TGG + chr8_2:5600866-5600885 Msa1229690:intron 20.0%
!!! ACTTTGATTATAAGATGTTT+TGG - chr8_2:5601050-5601069 None:intergenic 20.0%
!! ATTATGTGTGTAATTTACTT+TGG - chr8_2:5601680-5601699 None:intergenic 20.0%
!! TGCTGAATATTTAAATTTGT+GGG - chr8_2:5601923-5601942 None:intergenic 20.0%
!! AATTTAAATATTCAGCACAT+TGG + chr8_2:5601926-5601945 Msa1229690:intron 20.0%
!! AACTATAAATAAAACACTCT+TGG - chr8_2:5602067-5602086 None:intergenic 20.0%
!!! TTTTCTACTTTTTCTTATAG+TGG + chr8_2:5602711-5602730 Msa1229690:three_prime_UTR 20.0%
!!! CTGTTTTTTTGTCAAATTTC+AGG + chr8_2:5599553-5599572 Msa1229690:intron 25.0%
!! TTTTGTCAAATTTCAGGATA+TGG + chr8_2:5599559-5599578 Msa1229690:intron 25.0%
! TTTGTCAAATTTCAGGATAT+GGG + chr8_2:5599560-5599579 Msa1229690:intron 25.0%
! GAATTGGTATATGTAAAGAA+AGG - chr8_2:5599642-5599661 None:intergenic 25.0%
!!! ACAGTTTAATTTTGATACAC+TGG + chr8_2:5599699-5599718 Msa1229690:intron 25.0%
!! TCTAAAGTCAAACATAAGAT+TGG - chr8_2:5599761-5599780 None:intergenic 25.0%
! GTAAAAAATCTTTACACTGA+CGG + chr8_2:5599840-5599859 Msa1229690:intron 25.0%
!! CAAGAAAATGTAACTTTTCT+AGG + chr8_2:5600055-5600074 Msa1229690:intron 25.0%
!!! AATGATATTTTTATAGGAGC+TGG + chr8_2:5600102-5600121 Msa1229690:intron 25.0%
! AGAGTTAACTCAAAATTTGA+CGG - chr8_2:5600263-5600282 None:intergenic 25.0%
!! TTAGAACCTTTTTAAACGTA+GGG + chr8_2:5600421-5600440 Msa1229690:intron 25.0%
! TGATTAGATACTAGTGTAAA+AGG - chr8_2:5600604-5600623 None:intergenic 25.0%
!!! CATTTTTTCACACCAATTTT+AGG + chr8_2:5600632-5600651 Msa1229690:intron 25.0%
! CAATATACCATTCCTAAAAT+TGG - chr8_2:5600647-5600666 None:intergenic 25.0%
! TTAGGAATGGTATATTGATA+AGG + chr8_2:5600650-5600669 Msa1229690:intron 25.0%
! ATAAACAAACCAGACATAAT+AGG + chr8_2:5600681-5600700 Msa1229690:intron 25.0%
! TTGGTTCAATAAAACAGAAA+GGG - chr8_2:5601031-5601050 None:intergenic 25.0%
!! TTTGGTTCAATAAAACAGAA+AGG - chr8_2:5601032-5601051 None:intergenic 25.0%
!! TGTTGTTTGAAAATAATGAC+AGG + chr8_2:5601368-5601387 Msa1229690:intron 25.0%
! ACCTAAAGTGAGAAATTATT+TGG + chr8_2:5601427-5601446 Msa1229690:CDS 25.0%
! CCTAAAGTGAGAAATTATTT+GGG + chr8_2:5601428-5601447 Msa1229690:CDS 25.0%
!! ATTATTTGGGATTGGAAATA+CGG + chr8_2:5601441-5601460 Msa1229690:CDS 25.0%
! GAAATCAAAATTTACTGGAA+GGG - chr8_2:5601497-5601516 None:intergenic 25.0%
! AGAAATCAAAATTTACTGGA+AGG - chr8_2:5601498-5601517 None:intergenic 25.0%
! GATGAGAAATCAAAATTTAC+TGG - chr8_2:5601502-5601521 None:intergenic 25.0%
!! TGGCATCTAAATAAAGTTTT+CGG - chr8_2:5601660-5601679 None:intergenic 25.0%
! AAAATTGAAACTAACTGCAA+GGG - chr8_2:5601809-5601828 None:intergenic 25.0%
!! AAAGCACTAAAAAGAGAAAT+TGG + chr8_2:5601843-5601862 Msa1229690:intron 25.0%
! AAGCACTAAAAAGAGAAATT+GGG + chr8_2:5601844-5601863 Msa1229690:intron 25.0%
! GTGCTGAATATTTAAATTTG+TGG - chr8_2:5601924-5601943 None:intergenic 25.0%
!!! GATGTTTTTTCTTGAAATGA+GGG - chr8_2:5602122-5602141 None:intergenic 25.0%
!!! TGATGTTTTTTCTTGAAATG+AGG - chr8_2:5602123-5602142 None:intergenic 25.0%
! ATTGTAGATAATTTATCTCC+TGG + chr8_2:5602180-5602199 Msa1229690:CDS 25.0%
! TTGTAGATAATTTATCTCCT+GGG + chr8_2:5602181-5602200 Msa1229690:CDS 25.0%
! ATTTAGATAAAAATACCGGT+AGG - chr8_2:5602685-5602704 None:intergenic 25.0%
ACAGAGAAAGAAGAACTTAA+GGG - chr8_2:5599614-5599633 None:intergenic 30.0%
TACAGAGAAAGAAGAACTTA+AGG - chr8_2:5599615-5599634 None:intergenic 30.0%
AAAGGGGAAAACAATTGAAT+TGG - chr8_2:5599658-5599677 None:intergenic 30.0%
CCATTAATCAATTATAACGG+TGG - chr8_2:5599819-5599838 None:intergenic 30.0%
CCACCGTTATAATTGATTAA+TGG + chr8_2:5599816-5599835 Msa1229690:intron 30.0%
! GTTAGAACCTTTTTAAACGT+AGG + chr8_2:5600420-5600439 Msa1229690:intron 30.0%
! TAGAACCTTTTTAAACGTAG+GGG + chr8_2:5600422-5600441 Msa1229690:intron 30.0%
TGAAACCTAAAATAGAGGTA+AGG + chr8_2:5600452-5600471 Msa1229690:intron 30.0%
GAAACCTAAAATAGAGGTAA+GGG + chr8_2:5600453-5600472 Msa1229690:intron 30.0%
TGAAGGCTAAATTGTATGTT+TGG - chr8_2:5600480-5600499 None:intergenic 30.0%
!! TTTCACACCAATTTTAGGAA+TGG + chr8_2:5600637-5600656 Msa1229690:intron 30.0%
!! TTATGTCTGGTTTGTTTATC+CGG - chr8_2:5600680-5600699 None:intergenic 30.0%
AAAGAAATGCCTATTATGTC+TGG - chr8_2:5600693-5600712 None:intergenic 30.0%
TAATCATTAGACGAAAGCAA+GGG - chr8_2:5600754-5600773 None:intergenic 30.0%
ATAATCATTAGACGAAAGCA+AGG - chr8_2:5600755-5600774 None:intergenic 30.0%
ATGCATTTGTTCTTGATTGT+TGG + chr8_2:5600906-5600925 Msa1229690:intron 30.0%
TTAGCCTACATGTTATTGAT+TGG + chr8_2:5600931-5600950 Msa1229690:intron 30.0%
AATGCCAATCAATAACATGT+AGG - chr8_2:5600938-5600957 None:intergenic 30.0%
! TACATGTTATTGATTGGCAT+TGG + chr8_2:5600937-5600956 Msa1229690:intron 30.0%
ATTATCAACTTCCACATAGA+TGG - chr8_2:5600977-5600996 None:intergenic 30.0%
! TTGTGGATTGAGGAAAATAA+CGG - chr8_2:5601265-5601284 None:intergenic 30.0%
TATAACAATGTCGACAATTG+TGG - chr8_2:5601282-5601301 None:intergenic 30.0%
CCCAAATAATTTCTCACTTT+AGG - chr8_2:5601431-5601450 None:intergenic 30.0%
! AGTGAGAAATTATTTGGGAT+TGG + chr8_2:5601433-5601452 Msa1229690:CDS 30.0%
! TTTGATTTCTCATCCAGTTA+TGG + chr8_2:5601508-5601527 Msa1229690:intron 30.0%
CAAAATTGAAACTAACTGCA+AGG - chr8_2:5601810-5601829 None:intergenic 30.0%
!! CTTGCAGTTAGTTTCAATTT+TGG + chr8_2:5601808-5601827 Msa1229690:CDS 30.0%
TTAAATATTCAGCACATTGG+TGG + chr8_2:5601929-5601948 Msa1229690:intron 30.0%
TGTAGATAATTTATCTCCTG+GGG + chr8_2:5602182-5602201 Msa1229690:CDS 30.0%
GGCATGAAATATCACTAAAA+GGG - chr8_2:5602262-5602281 None:intergenic 30.0%
AGGCATGAAATATCACTAAA+AGG - chr8_2:5602263-5602282 None:intergenic 30.0%
ACACTATAAAATGTCTGCAA+TGG - chr8_2:5602593-5602612 None:intergenic 30.0%
! AGAAAAGTATGCATTCTCTT+AGG + chr8_2:5602656-5602675 Msa1229690:three_prime_UTR 30.0%
CGTCACAAGAAGTTAGTATA+TGG + chr8_2:5599263-5599282 Msa1229690:CDS 35.0%
GTTGTGACTTATGTTGTTGT+TGG - chr8_2:5599418-5599437 None:intergenic 35.0%
ACTCAATCTCTCTAACAACT+TGG + chr8_2:5599475-5599494 Msa1229690:CDS 35.0%
! TGACGAAATTTTGCTGACAT+TGG - chr8_2:5600237-5600256 None:intergenic 35.0%
! AGAACCTTTTTAAACGTAGG+GGG + chr8_2:5600423-5600442 Msa1229690:intron 35.0%
TGGCTTGAAACCTAAAATAG+AGG + chr8_2:5600447-5600466 Msa1229690:intron 35.0%
GGTATATTGATAAGGAGAAC+CGG + chr8_2:5600658-5600677 Msa1229690:intron 35.0%
CATAAACAATGAAAGGCAGA+AGG - chr8_2:5600724-5600743 None:intergenic 35.0%
TCTGCCTTTCATTGTTTATG+AGG + chr8_2:5600724-5600743 Msa1229690:intron 35.0%
CTGCCTTTCATTGTTTATGA+GGG + chr8_2:5600725-5600744 Msa1229690:intron 35.0%
TGCCTTTCATTGTTTATGAG+GGG + chr8_2:5600726-5600745 Msa1229690:intron 35.0%
!! TTATTGATTGGCATTGGCAT+TGG + chr8_2:5600943-5600962 Msa1229690:intron 35.0%
! AACTCTTTTACCCTAACATC+AGG + chr8_2:5601087-5601106 Msa1229690:intron 35.0%
TTTACCACATCCTGATGTTA+GGG - chr8_2:5601100-5601119 None:intergenic 35.0%
ATTTACCACATCCTGATGTT+AGG - chr8_2:5601101-5601120 None:intergenic 35.0%
! CGTAGTGGAATTTGAATCAA+TGG + chr8_2:5601152-5601171 Msa1229690:intron 35.0%
!! TACAAAGCGTTGTCAAATAG+AGG + chr8_2:5601197-5601216 Msa1229690:intron 35.0%
TTGAAAATAATGACAGGCAG+TGG + chr8_2:5601374-5601393 Msa1229690:intron 35.0%
TAAGCTGAATGTACCATAAC+TGG - chr8_2:5601524-5601543 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG + chr8_2:5601610-5601629 Msa1229690:CDS 35.0%
! ACCTATTTCTTTCAAGCAGT+TGG + chr8_2:5601766-5601785 Msa1229690:CDS 35.0%
ACCAACTGCTTGAAAGAAAT+AGG - chr8_2:5601770-5601789 None:intergenic 35.0%
! GGCTACATTGTTGTTACTTA+AGG + chr8_2:5602033-5602052 Msa1229690:intron 35.0%
TAGTTAATGATTTCCCTCAC+CGG + chr8_2:5602082-5602101 Msa1229690:intron 35.0%
! TTTTTCTTGAAATGAGGGTC+TGG - chr8_2:5602117-5602136 None:intergenic 35.0%
GTAGATAATTTATCTCCTGG+GGG + chr8_2:5602183-5602202 Msa1229690:CDS 35.0%
AATCTCTTAAGTATTCTCGC+AGG - chr8_2:5602283-5602302 None:intergenic 35.0%
TGAAAAAGACAACCACAAGA+GGG - chr8_2:5602312-5602331 None:intergenic 35.0%
CACTGTCACACAATATAGAA+GGG - chr8_2:5602430-5602449 None:intergenic 35.0%
TCACTGTCACACAATATAGA+AGG - chr8_2:5602431-5602450 None:intergenic 35.0%
TCTATATTGTGTGACAGTGA+AGG + chr8_2:5602431-5602450 Msa1229690:CDS 35.0%
ATGGTTATTAAGCAACCCTA+TGG + chr8_2:5602454-5602473 Msa1229690:CDS 35.0%
TGGTTATTAAGCAACCCTAT+GGG + chr8_2:5602455-5602474 Msa1229690:CDS 35.0%
! TCAATCACATCTGCTTCTTT+TGG - chr8_2:5602544-5602563 None:intergenic 35.0%
ATAAAATGTCTGCAATGGAC+AGG - chr8_2:5602588-5602607 None:intergenic 35.0%
ATATGTTCAACATCAACCAC+AGG + chr8_2:5602633-5602652 Msa1229690:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAGAG+AGG - chr8_2:5599344-5599363 None:intergenic 40.0%
TACTTGGGAAATAGAGGAAG+AGG - chr8_2:5599381-5599400 None:intergenic 40.0%
! AGCTGTTACTTGGGAAATAG+AGG - chr8_2:5599387-5599406 None:intergenic 40.0%
! GTCTTGTTCAGCTGTTACTT+GGG - chr8_2:5599396-5599415 None:intergenic 40.0%
! TGCTGACATTGGTTACGTAA+GGG - chr8_2:5600226-5600245 None:intergenic 40.0%
! TTGCTGACATTGGTTACGTA+AGG - chr8_2:5600227-5600246 None:intergenic 40.0%
! TGGTCCCTTACCTCTATTTT+AGG - chr8_2:5600460-5600479 None:intergenic 40.0%
GCCTTTCATTGTTTATGAGG+GGG + chr8_2:5600727-5600746 Msa1229690:intron 40.0%
ACCCCCTCATAAACAATGAA+AGG - chr8_2:5600731-5600750 None:intergenic 40.0%
TTTACCCTAACATCAGGATG+TGG + chr8_2:5601093-5601112 Msa1229690:intron 40.0%
TCAGGATGTGGTAAATGAGT+AGG + chr8_2:5601105-5601124 Msa1229690:intron 40.0%
AAATAGCAGCTATAGCGTAG+TGG + chr8_2:5601137-5601156 Msa1229690:intron 40.0%
! ATGTCGACAATTGTGGATTG+AGG - chr8_2:5601275-5601294 None:intergenic 40.0%
!! CGAGTAAGTGTGCTGTTTAT+CGG - chr8_2:5601336-5601355 None:intergenic 40.0%
AAATAATGACAGGCAGTGGT+AGG + chr8_2:5601378-5601397 Msa1229690:intron 40.0%
ACTTTGATTCCATGTGCAGA+TGG + chr8_2:5601577-5601596 Msa1229690:intron 40.0%
!! CAGTTGGTAGAATCATATCC+TGG + chr8_2:5601782-5601801 Msa1229690:CDS 40.0%
! TCACTGTCCTAATGGTTTGT+TGG + chr8_2:5601869-5601888 Msa1229690:intron 40.0%
AATCCAGCCAACAAACCATT+AGG - chr8_2:5601879-5601898 None:intergenic 40.0%
!! AATGGTTTGTTGGCTGGATT+TGG + chr8_2:5601879-5601898 Msa1229690:intron 40.0%
ATTTGTGGGATTGTGACTAC+AGG - chr8_2:5601909-5601928 None:intergenic 40.0%
! AAGAGTTTTGCAGAAGCCTT+TGG + chr8_2:5602149-5602168 Msa1229690:CDS 40.0%
TCTACAATAGCACCAACCAA+AGG - chr8_2:5602168-5602187 None:intergenic 40.0%
! GAGATTCATTTTCCCTCTTG+TGG + chr8_2:5602297-5602316 Msa1229690:intron 40.0%
GTGAAAAAGACAACCACAAG+AGG - chr8_2:5602313-5602332 None:intergenic 40.0%
!! CTTGTGGTTGTCTTTTTCAC+AGG + chr8_2:5602313-5602332 Msa1229690:intron 40.0%
GGTATTTGTACAGTCTGATG+TGG + chr8_2:5602334-5602353 Msa1229690:intron 40.0%
GTGCATCAACTTCATCAAAC+TGG - chr8_2:5602385-5602404 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG + chr8_2:5602435-5602454 Msa1229690:CDS 40.0%
GGTTATTAAGCAACCCTATG+GGG + chr8_2:5602456-5602475 Msa1229690:CDS 40.0%
GAGATTCATGCAGAATTCGA+AGG + chr8_2:5602494-5602513 Msa1229690:CDS 40.0%
ATTCATGCAGAATTCGAAGG+AGG + chr8_2:5602497-5602516 Msa1229690:CDS 40.0%
TTCATGCAGAATTCGAAGGA+GGG + chr8_2:5602498-5602517 Msa1229690:CDS 40.0%
AAGGAGGGAAAATCTATCGA+AGG + chr8_2:5602513-5602532 Msa1229690:CDS 40.0%
! GAATGCATACTTTTCTCCTG+TGG - chr8_2:5602652-5602671 None:intergenic 40.0%
TTGAAGAGAAAGAGGGGAGA+TGG + chr8_2:5599199-5599218 Msa1229690:exon 45.0%
TGAAGAGAAAGAGGGGAGAT+GGG + chr8_2:5599200-5599219 Msa1229690:exon 45.0%
GGTGAAAATGAGAGTGAGAG+TGG - chr8_2:5599314-5599333 None:intergenic 45.0%
GAAGAAGAGAGAGGACGAAA+GGG - chr8_2:5599335-5599354 None:intergenic 45.0%
AGAAGAAGAGAGAGGACGAA+AGG - chr8_2:5599336-5599355 None:intergenic 45.0%
GAAATAGAGGAAGAGGAGAG+TGG - chr8_2:5599374-5599393 None:intergenic 45.0%
!! GGTCTTGTTCAGCTGTTACT+TGG - chr8_2:5599397-5599416 None:intergenic 45.0%
ACGCACATGGATGACTTATG+GGG - chr8_2:5600308-5600327 None:intergenic 45.0%
GACGCACATGGATGACTTAT+GGG - chr8_2:5600309-5600328 None:intergenic 45.0%
AGACGCACATGGATGACTTA+TGG - chr8_2:5600310-5600329 None:intergenic 45.0%
GTGTTTAACAGAGACGCACA+TGG - chr8_2:5600321-5600340 None:intergenic 45.0%
CATCCAATATCCACCATGAG+TGG - chr8_2:5600841-5600860 None:intergenic 45.0%
!! CTCATGGTGGATATTGGATG+TGG + chr8_2:5600841-5600860 Msa1229690:CDS 45.0%
! TGGCTTGGATACCATCTATG+TGG + chr8_2:5600963-5600982 Msa1229690:intron 45.0%
GCAGTGGTAGGTTTCTTATG+TGG + chr8_2:5601390-5601409 Msa1229690:CDS 45.0%
TGGGATTGGAAATACGGCAA+AGG + chr8_2:5601447-5601466 Msa1229690:CDS 45.0%
GGGATTGGAAATACGGCAAA+GGG + chr8_2:5601448-5601467 Msa1229690:CDS 45.0%
TGGAAATACGGCAAAGGGTA+AGG + chr8_2:5601453-5601472 Msa1229690:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG + chr8_2:5601616-5601635 Msa1229690:CDS 45.0%
!! ATTGGGTGTCACTGTCCTAA+TGG + chr8_2:5601861-5601880 Msa1229690:intron 45.0%
!! TGTCCTAATGGTTTGTTGGC+TGG + chr8_2:5601873-5601892 Msa1229690:intron 45.0%
! GTTTTGCAGAAGCCTTTGGT+TGG + chr8_2:5602153-5602172 Msa1229690:CDS 45.0%
TAATTTATCTCCTGGGGGAC+AGG + chr8_2:5602188-5602207 Msa1229690:CDS 45.0%
AGAAAATATACCTGTCCCCC+AGG - chr8_2:5602201-5602220 None:intergenic 45.0%
ACAGTCTGATGTGGTTGAAG+TGG + chr8_2:5602343-5602362 Msa1229690:CDS 45.0%
TAAGCAACCCTATGGGGATT+AGG + chr8_2:5602462-5602481 Msa1229690:CDS 45.0%
TCTCAGTCCTAATCCCCATA+GGG - chr8_2:5602472-5602491 None:intergenic 45.0%
CATTCTCTTAGGATGCCTAC+CGG + chr8_2:5602667-5602686 Msa1229690:three_prime_UTR 45.0%
!! ATTTATTTATTTGTAATTTA+AGG + chr8_2:5602752-5602771 Msa1229690:three_prime_UTR 5.0%
!! GAGATGGGTTATTGCTGTGG+AGG + chr8_2:5599215-5599234 Msa1229690:exon 50.0%
TGGGTTATTGCTGTGGAGGT+TGG + chr8_2:5599219-5599238 Msa1229690:CDS 50.0%
! CTCTGTCTAGAATGTCCACG+TGG + chr8_2:5600279-5600298 Msa1229690:intron 50.0%
CGCACATGGATGACTTATGG+GGG - chr8_2:5600307-5600326 None:intergenic 50.0%
GTGCGTCTCTGTTAAACACG+TGG + chr8_2:5600322-5600341 Msa1229690:intron 50.0%
CCAGCCCCCTACGTTTAAAA+AGG - chr8_2:5600430-5600449 None:intergenic 50.0%
! CCTTTTTAAACGTAGGGGGC+TGG + chr8_2:5600427-5600446 Msa1229690:intron 50.0%
!! CTGCCACTCATGGTGGATAT+TGG + chr8_2:5600835-5600854 Msa1229690:CDS 50.0%
!! GATTGGCATTGGCATTGGCT+TGG + chr8_2:5600948-5600967 Msa1229690:intron 50.0%
TGGTGAAGCGTGCTGAGTTA+TGG + chr8_2:5601597-5601616 Msa1229690:CDS 50.0%
GGTGAAGCGTGCTGAGTTAT+GGG + chr8_2:5601598-5601617 Msa1229690:CDS 50.0%
GAAACTAACTGCAAGGGTCC+AGG - chr8_2:5601803-5601822 None:intergenic 50.0%
GACTGCAGGCGATCACTTAT+TGG + chr8_2:5602012-5602031 Msa1229690:intron 50.0%
CTCTCAGTCCTAATCCCCAT+AGG - chr8_2:5602473-5602492 None:intergenic 50.0%
!! GGGGAGATGGGTTATTGCTG+TGG + chr8_2:5599212-5599231 Msa1229690:exon 55.0%
!! TTCCAGTCTGGTACTGGTGC+AGG - chr8_2:5600793-5600812 None:intergenic 55.0%
ACCAGTACCAGACTGGAACC+AGG + chr8_2:5600795-5600814 Msa1229690:CDS 55.0%
ACCTGGTTCCAGTCTGGTAC+TGG - chr8_2:5600799-5600818 None:intergenic 55.0%
GCAAACACCTGGTTCCAGTC+TGG - chr8_2:5600805-5600824 None:intergenic 55.0%
CACGCTTCACCATCTGCACA+TGG - chr8_2:5601589-5601608 None:intergenic 55.0%
!! TGACTTATGGGGGTGCCACG+TGG - chr8_2:5600297-5600316 None:intergenic 60.0%
CTCCTGCACCAGTACCAGAC+TGG + chr8_2:5600788-5600807 Msa1229690:CDS 60.0%
GAGCAGGGTCTGCAAACACC+TGG - chr8_2:5600816-5600835 None:intergenic 60.0%
AGACCCTGCTCTGCCACTCA+TGG + chr8_2:5600825-5600844 Msa1229690:CDS 60.0%
CCACCATGAGTGGCAGAGCA+GGG - chr8_2:5600831-5600850 None:intergenic 60.0%
TCCACCATGAGTGGCAGAGC+AGG - chr8_2:5600832-5600851 None:intergenic 60.0%
CTGCGTGAGACTGTGACTGC+AGG + chr8_2:5601998-5602017 Msa1229690:intron 60.0%
CTGGACACTGCATCCGGTGA+GGG - chr8_2:5602098-5602117 None:intergenic 60.0%
TCTGGACACTGCATCCGGTG+AGG - chr8_2:5602099-5602118 None:intergenic 60.0%
GAGGGTCTGGACACTGCATC+CGG - chr8_2:5602104-5602123 None:intergenic 60.0%
CCCTGCTCTGCCACTCATGG+TGG + chr8_2:5600828-5600847 Msa1229690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 5599198 5602793 5599198 ID=Msa1229690;Name=Msa1229690
chr8_2 mRNA 5599198 5602793 5599198 ID=Msa1229690-mRNA-1;Parent=Msa1229690;Name=Msa1229690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=20|1|1|1|1|1|8|234|316
chr8_2 exon 5599198 5599496 5599198 ID=Msa1229690-mRNA-1:exon:1925;Parent=Msa1229690-mRNA-1
chr8_2 exon 5599575 5599631 5599575 ID=Msa1229690-mRNA-1:exon:1926;Parent=Msa1229690-mRNA-1
chr8_2 exon 5600787 5600862 5600787 ID=Msa1229690-mRNA-1:exon:1927;Parent=Msa1229690-mRNA-1
chr8_2 exon 5601390 5601469 5601390 ID=Msa1229690-mRNA-1:exon:1928;Parent=Msa1229690-mRNA-1
chr8_2 exon 5601596 5601645 5601596 ID=Msa1229690-mRNA-1:exon:1929;Parent=Msa1229690-mRNA-1
chr8_2 exon 5601745 5601829 5601745 ID=Msa1229690-mRNA-1:exon:1930;Parent=Msa1229690-mRNA-1
chr8_2 exon 5602111 5602209 5602111 ID=Msa1229690-mRNA-1:exon:1931;Parent=Msa1229690-mRNA-1
chr8_2 exon 5602335 5602793 5602335 ID=Msa1229690-mRNA-1:exon:1932;Parent=Msa1229690-mRNA-1
chr8_2 five_prime_UTR 5599198 5599217 5599198 ID=Msa1229690-mRNA-1:five_prime_utr;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5599218 5599496 5599218 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5599575 5599631 5599575 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5600787 5600862 5600787 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5601390 5601469 5601390 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5601596 5601645 5601596 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5601745 5601829 5601745 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5602111 5602209 5602111 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 CDS 5602335 5602559 5602335 ID=Msa1229690-mRNA-1:cds;Parent=Msa1229690-mRNA-1
chr8_2 three_prime_UTR 5602560 5602793 5602560 ID=Msa1229690-mRNA-1:three_prime_utr;Parent=Msa1229690-mRNA-1
Gene Sequence

>Msa1229690

ATGGGTTATTGCTGTGGAGGTTGGCGTATATTACAGATACAGAGTCGTCACAAGAAGTTAGTATATGGCATTGATACTGCTTTAGTAATGTTACCACTCTCACTCTCATTTTCACCCTTTCGTCCTCTCTCTTCTTCTTCTTCTTCTTCTCTTCCACTCTCCTCTTCCTCTATTTCCCAAGTAACAGCTGAACAAGACCAACAACAACATAAGTCACAACGAAAAAGCTCACAACTCGTCGCATTAGAATATGCTGAACTCAATCTCTCTAACAACTTGGATATGGGTCATGTCAGAATCAGACAACATGTCAATCCCTTAAGTTCTTCTTTCTCTACTCCTGCACCAGTACCAGACTGGAACCAGGTGTTTGCAGACCCTGCTCTGCCACTCATGGTGGATATTGGATGTGGCAGTGGTAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGTGAGAAATTATTTGGGATTGGAAATACGGCAAAGGATGGTGAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCACCTATTTCTTTCAAGCAGTTGGTAGAATCATATCCTGGACCCTTGCAGTTAGTTTCAATTTTGTGTCCAGACCCTCATTTCAAGAAAAAACATCATAAAAGAAGAGTTTTGCAGAAGCCTTTGGTTGGTGCTATTGTAGATAATTTATCTCCTGGGGGACAGGTATTTGTACAGTCTGATGTGGTTGAAGTGGCACTTGACATGAAAAACCAGTTTGATGAAGTTGATGCACTTAGTCACACAGATGCTTTGAACCCTTCTATATTGTGTGACAGTGAAGGATGGTTATTAAGCAACCCTATGGGGATTAGGACTGAGAGAGAGATTCATGCAGAATTCGAAGGAGGGAAAATCTATCGAAGGTTGTACCAAAAGAAGCAGATGTGA

Protein sequence

>Msa1229690

MGYCCGGWRILQIQSRHKKLVYGIDTALVMLPLSLSFSPFRPLSSSSSSSLPLSSSSISQVTAEQDQQQHKSQRKSSQLVALEYAELNLSNNLDMGHVRIRQHVNPLSSSFSTPAPVPDWNQVFADPALPLMVDIGCGSGRFLMWLAKRTPKVRNYLGLEIRQRMVKRAELWVKDLALDNIHFLFANAPISFKQLVESYPGPLQLVSILCPDPHFKKKHHKRRVLQKPLVGAIVDNLSPGGQVFVQSDVVEVALDMKNQFDEVDALSHTDALNPSILCDSEGWLLSNPMGIRTEREIHAEFEGGKIYRRLYQKKQM*