AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373950 MtrunA17_Chr7g0260731 95.307 277 2 1 91 367 1 266 0.0 539
Msa1373950 MtrunA17_Chr1g0187901 69.231 403 100 8 1 392 1 390 5.51e-169 478
Msa1373950 MtrunA17_Chr1g0165841 55.733 375 133 6 25 392 19 367 1.12e-133 387
Msa1373950 MtrunA17_Chr8g0380621 43.627 408 195 7 1 392 34 422 5.02e-104 313
Msa1373950 MtrunA17_Chr2g0333971 44.254 409 165 10 17 379 43 434 2.50e-97 297
Msa1373950 MtrunA17_Chr1g0165861 59.825 229 76 2 164 392 3 215 2.50e-93 279
Msa1373950 MtrunA17_Chr5g0393831 41.667 432 174 11 12 384 23 435 2.33e-92 284
Msa1373950 MtrunA17_Chr5g0419611 37.065 402 189 9 17 387 32 400 6.50e-77 243
Msa1373950 MtrunA17_Chr8g0384941 37.965 403 205 6 18 386 28 419 3.26e-76 242
Msa1373950 MtrunA17_Chr1g0206981 35.934 423 207 11 18 389 14 423 2.19e-72 232
Msa1373950 MtrunA17_Chr7g0260721 97.368 76 2 0 1 76 1 76 1.15e-44 149
Msa1373950 MtrunA17_Chr1g0187911 49.701 167 33 3 199 365 37 152 2.11e-43 148
Msa1373950 MtrunA17_Chr8g0385861 34.884 215 111 3 17 202 26 240 1.40e-35 130
Msa1373950 MtrunA17_Chr1g0165871 50.000 126 48 2 18 128 6 131 1.75e-28 109
Msa1373950 MtrunA17_Chr2g0307921 61.842 76 22 1 17 85 9 84 1.11e-20 86.3
Msa1373950 MtrunA17_Chr8g0385851 36.792 106 67 0 285 390 5 110 5.76e-18 79.0
Msa1373950 MtrunA17_Chr2g0307931 63.492 63 16 1 30 85 20 82 1.16e-16 75.1
Msa1373950 MtrunA17_Chr1g0176551 48.864 88 44 1 135 222 57 143 8.99e-16 77.0
Msa1373950 MtrunA17_Chr2g0320641 23.140 363 218 7 32 383 123 435 3.87e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373950 AT5G64560.1 69.767 387 94 6 18 392 19 394 3.66e-165 468
Msa1373950 AT5G09690.2 62.916 391 116 5 12 392 26 397 1.37e-163 464
Msa1373950 AT5G09690.1 62.916 391 116 5 12 392 15 386 1.78e-163 464
Msa1373950 AT5G64560.2 70.278 360 84 6 18 365 19 367 5.75e-153 437
Msa1373950 AT5G09690.12 63.462 364 104 5 12 365 26 370 3.00e-151 432
Msa1373950 AT5G09690.4 57.841 389 124 4 12 392 15 371 5.24e-143 411
Msa1373950 AT5G09690.9 62.577 326 93 5 12 327 15 321 8.26e-125 363
Msa1373950 AT5G09690.13 62.848 323 91 5 12 324 26 329 1.24e-124 363
Msa1373950 AT5G09690.7 62.654 324 92 5 12 325 15 319 1.25e-124 363
Msa1373950 AT5G09690.8 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa1373950 AT5G09690.11 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa1373950 AT5G09690.3 62.848 323 91 5 12 324 15 318 2.04e-124 362
Msa1373950 AT1G16010.3 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1373950 AT1G16010.1 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1373950 AT1G16010.2 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1373950 AT3G58970.1 43.970 398 184 8 17 392 56 436 4.66e-101 306
Msa1373950 AT5G09690.5 61.091 275 89 4 12 276 15 281 1.07e-98 295
Msa1373950 AT5G09690.14 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1373950 AT5G09690.10 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1373950 AT5G09690.6 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1373950 AT1G80900.2 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa1373950 AT1G80900.1 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa1373950 AT5G09720.1 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa1373950 AT5G09720.2 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa1373950 AT3G19640.1 38.274 452 179 11 25 390 46 483 3.69e-84 265
Msa1373950 AT2G03620.1 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa1373950 AT2G03620.2 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa1373950 AT4G28580.1 35.092 379 206 8 26 390 55 407 1.69e-67 219

Find 92 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACGCATATGTATTTAAA+TGG 0.188180 tig0019464:+119745 Msa1373950:CDS
CTTTAGGTGGTGATTCTTAC+TGG 0.220365 tig0019464:+119895 Msa1373950:intron
TCATTGGTAGCTGCAATATT+TGG 0.220816 tig0019464:+119693 Msa1373950:CDS
TGACCTTCTTTCCATGTATA+TGG 0.239696 tig0019464:-119726 None:intergenic
AAAAGATTTGATTACCTTAG+AGG 0.251185 tig0019464:-117757 None:intergenic
GGCAATAGCTTGATTTATAA+TGG 0.283237 tig0019464:+120267 Msa1373950:three_prime_UTR
TCATATCCTTCCACCATTCT+TGG 0.294400 tig0019464:+116868 Msa1373950:CDS
ACAGATCAGCAGTCGTAATT+TGG 0.309187 tig0019464:+118346 Msa1373950:intron
TCCATCAATTTGTATGAAAT+AGG 0.322286 tig0019464:-119159 None:intergenic
CTCAAAGATCTTCTATATCT+TGG 0.328184 tig0019464:-120197 None:intergenic
TCCATTTGAGTTTCGAGCTT+TGG 0.329463 tig0019464:+117647 Msa1373950:CDS
TCACCGAAATCAACTGATTC+AGG 0.331607 tig0019464:+119544 Msa1373950:CDS
GACTGCTGCTTATCCAGCTT+TGG 0.351888 tig0019464:+117725 Msa1373950:CDS
ATACCTGAATCAGTTGATTT+CGG 0.353513 tig0019464:-119547 None:intergenic
TGCAAGAGATCTTCGAATAA+TGG 0.360463 tig0019464:+116834 Msa1373950:CDS
CCACTCAAGGTAAGTGTTGC+TGG 0.361150 tig0019464:+117247 Msa1373950:CDS
GCCTATTTCATACAAATTGA+TGG 0.369964 tig0019464:+119158 Msa1373950:CDS
CACATAACTCTTCTTCTACT+TGG 0.378469 tig0019464:-117276 None:intergenic
GGTGAAGGTGGAGAAGAAAA+TGG 0.378750 tig0019464:+117307 Msa1373950:CDS
AGCAATACTTGCAAAATAAC+AGG 0.385725 tig0019464:+120224 Msa1373950:three_prime_UTR
GACTTTCTCTCTTCCAAGAA+TGG 0.389828 tig0019464:-116881 None:intergenic
GCTCGACGCAAAGGTCTTGT+TGG 0.403901 tig0019464:+119958 Msa1373950:CDS
TTTGGATGAACTAACCTCTA+AGG 0.407168 tig0019464:+117743 Msa1373950:CDS
CTAGAGCTATTCCTAAGTTC+CGG 0.407596 tig0019464:+119648 Msa1373950:CDS
TAGAGCTATTCCTAAGTTCC+GGG 0.413834 tig0019464:+119649 Msa1373950:CDS
AAACTACTATTTCAAGAAGC+TGG 0.423267 tig0019464:+116734 Msa1373950:CDS
TCGAGCTTTGGAAGTTGTAT+TGG 0.424295 tig0019464:+117659 Msa1373950:CDS
GAAGATCGATGCACCTTGTT+GGG 0.427911 tig0019464:+119995 Msa1373950:three_prime_UTR
TAAGTATGCTATTATGCGTT+TGG 0.428253 tig0019464:+116801 Msa1373950:CDS
GGAAGTGCAGCAACACTTCA+AGG 0.431204 tig0019464:+118848 Msa1373950:CDS
CTGTATGTTAATGTAATCTT+CGG 0.434923 tig0019464:-119308 None:intergenic
TCCAAAGCTCGAAACTCAAA+TGG 0.437377 tig0019464:-117648 None:intergenic
ATTCTTACTGGAATGGTTTG+TGG 0.437976 tig0019464:+119907 Msa1373950:CDS
TTGTTTATCAATATATTCAT+TGG 0.442759 tig0019464:+119677 Msa1373950:CDS
CTTCGTAGCTCTTCAACAAC+AGG 0.444279 tig0019464:-117217 None:intergenic
GGTGGTGATTCTTACTGGAA+TGG 0.450291 tig0019464:+119900 Msa1373950:intron
ATATGGACTGTGATGCCAAT+TGG 0.456144 tig0019464:-118795 None:intergenic
GGAGTTGCAATCAATTTATG+TGG 0.463588 tig0019464:+120245 Msa1373950:three_prime_UTR
CTCGACGCAAAGGTCTTGTT+GGG 0.467590 tig0019464:+119959 Msa1373950:CDS
TCACGCATATGTATTTAAAT+GGG 0.487791 tig0019464:+119746 Msa1373950:CDS
GTATGAACATTCCATATACA+TGG 0.489016 tig0019464:+119715 Msa1373950:CDS
AGCTTTGGAAGTTGTATTGG+AGG 0.492401 tig0019464:+117662 Msa1373950:CDS
GTAGCTCTGACGGTCCCAAT+TGG 0.492514 tig0019464:+118780 Msa1373950:CDS
AACAAACAGTCCCGGAACTT+AGG 0.497975 tig0019464:-119659 None:intergenic
TATGGACTGTGATGCCAATT+GGG 0.507694 tig0019464:-118794 None:intergenic
TGAAGATCGATGCACCTTGT+TGG 0.509800 tig0019464:+119994 Msa1373950:three_prime_UTR
ACTTTATTTATCAAGAAAGA+TGG 0.511194 tig0019464:+118736 Msa1373950:CDS
CGAAGATTACATTAACATAC+AGG 0.512088 tig0019464:+119309 Msa1373950:CDS
ATTCCATATACATGGAAAGA+AGG 0.515189 tig0019464:+119723 Msa1373950:CDS
GAGGTTAGTTCATCCAAAGC+TGG 0.516706 tig0019464:-117738 None:intergenic
GGCACAACATCATCATCCAT+TGG 0.518806 tig0019464:-117196 None:intergenic
GAAGAGTTATGTGTTCAAGA+AGG 0.534356 tig0019464:+117286 Msa1373950:CDS
ATATCGTATGCTCGACGCAA+AGG 0.536903 tig0019464:+119949 Msa1373950:CDS
GAAGTGCAGCAACACTTCAA+GGG 0.539485 tig0019464:+118849 Msa1373950:CDS
GCACAACATCATCATCCATT+GGG 0.541642 tig0019464:-117195 None:intergenic
GTCAGAGCTACTTGAGGGAG+AGG 0.543567 tig0019464:-118768 None:intergenic
GGACCGTCAGAGCTACTTGA+GGG 0.544992 tig0019464:-118773 None:intergenic
TAGAGATATAGTATTGGATG+TGG 0.546858 tig0019464:+116777 Msa1373950:CDS
AAGGTAAGTGTTGCTGGTCA+AGG 0.546948 tig0019464:+117253 Msa1373950:CDS
CCAGCAACACTTACCTTGAG+TGG 0.551535 tig0019464:-117247 None:intergenic
TGATGCACGGACAAGAGAGT+TGG 0.552309 tig0019464:+117701 Msa1373950:CDS
GGCTCTTGCTAGTTCTGAAG+TGG 0.556724 tig0019464:+116681 Msa1373950:CDS
ACTCTCTTGTCCGTGCATCA+AGG 0.560525 tig0019464:-117698 None:intergenic
TGTGTTCAAGAAGGTGAAGG+TGG 0.562146 tig0019464:+117295 Msa1373950:CDS
TTTAGTTGCAAAATACAAAG+TGG 0.566853 tig0019464:+120377 Msa1373950:three_prime_UTR
TGGCATCACAGTCCATATCA+AGG 0.568722 tig0019464:+118800 Msa1373950:CDS
AGCTATAATCACTGCTGAAG+AGG 0.569524 tig0019464:+117024 Msa1373950:CDS
TTTCTCTCTTCCAAGAATGG+TGG 0.573424 tig0019464:-116878 None:intergenic
TTGTTGAAGAGCTACGAAGA+AGG 0.575051 tig0019464:+117221 Msa1373950:CDS
TTTGTAGTTTCCTTGATGCA+CGG 0.575385 tig0019464:+117688 Msa1373950:CDS
ACGAAGAAGGTTACCACTCA+AGG 0.578939 tig0019464:+117234 Msa1373950:CDS
GGTATTGGTTAGAGACCCAA+TGG 0.587484 tig0019464:+117180 Msa1373950:intron
TGAAGTTGTCTGATCAAGAT+CGG 0.589745 tig0019464:+119024 Msa1373950:CDS
TCTCCCTCAAGTAGCTCTGA+CGG 0.594034 tig0019464:+118770 Msa1373950:CDS
TAATTTCTTGTAGATAAGAG+AGG 0.596735 tig0019464:+118673 Msa1373950:intron
TATTGATAAACAAACAGTCC+CGG 0.596765 tig0019464:-119667 None:intergenic
TTATGTGTTCAAGAAGGTGA+AGG 0.608709 tig0019464:+117292 Msa1373950:CDS
GTGGAAGGATATGAAAGAAG+AGG 0.608726 tig0019464:-116859 None:intergenic
GTTGTCTGATCAAGATCGGA+CGG 0.610101 tig0019464:+119028 Msa1373950:CDS
TCTCTTCCAAGAATGGTGGA+AGG 0.610885 tig0019464:-116874 None:intergenic
TGATGGTAGAGATATAGTAT+TGG 0.611654 tig0019464:+116771 Msa1373950:CDS
GAGTTGCAATCAATTTATGT+GGG 0.621368 tig0019464:+120246 Msa1373950:three_prime_UTR
AAGTGCAGCAACACTTCAAG+GGG 0.628244 tig0019464:+118850 Msa1373950:CDS
AGAGCTTGAGATGTTACTAG+AGG 0.632089 tig0019464:+118886 Msa1373950:CDS
GATCGATGCACCTTGTTGGG+AGG 0.635193 tig0019464:+119998 Msa1373950:three_prime_UTR
GTTGACAAATCGTGTTCACA+AGG 0.641613 tig0019464:+118403 Msa1373950:CDS
TAGGTGATGAGATGATGTCT+CGG 0.644102 tig0019464:+120173 Msa1373950:intron
TATTCTGGTACCTCCCAACA+AGG 0.647291 tig0019464:-120008 None:intergenic
AACATTAAATAAATTGACCA+CGG 0.651405 tig0019464:+119181 Msa1373950:CDS
ATACTATATCTCTACCATCA+CGG 0.653488 tig0019464:-116768 None:intergenic
GGGACCGTCAGAGCTACTTG+AGG 0.654969 tig0019464:-118774 None:intergenic
AAAATACACAGATCAAGCAG+AGG 0.682981 tig0019464:+118827 Msa1373950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTATTATCAT+TGG + tig0019464:117517-117536 Msa1373950:intron 10.0%
!! TATATAATATGAATATAGTA+AGG + tig0019464:118151-118170 Msa1373950:intron 10.0%
!!! AAATAACAAATAGATATTTT+AGG + tig0019464:118433-118452 Msa1373950:intron 10.0%
!! AAATTATTAATCAAAGTAAT+TGG - tig0019464:118654-118673 None:intergenic 10.0%
!!! ATTCTGATTTTTATAATTTT+TGG + tig0019464:119859-119878 Msa1373950:intron 10.0%
!!! TTCTGATTTTTATAATTTTT+GGG + tig0019464:119860-119879 Msa1373950:intron 10.0%
!!! AATTATACTATTGTTAATTT+TGG - tig0019464:120089-120108 None:intergenic 10.0%
!! ATAAAAAAGTCATAATTGTT+AGG - tig0019464:117432-117451 None:intergenic 15.0%
!!! TGTGTTGTTTTTAATAATAA+TGG + tig0019464:117594-117613 Msa1373950:intron 15.0%
!!! GTGTTGTTTTTAATAATAAT+GGG + tig0019464:117595-117614 Msa1373950:intron 15.0%
!! ATTAAACTAAAATTCAGTTA+AGG - tig0019464:117887-117906 None:intergenic 15.0%
!! TATACTAATAATAACAACAT+TGG + tig0019464:118102-118121 Msa1373950:intron 15.0%
!!! AATTAATCAGTATTTTTTTC+AGG - tig0019464:118219-118238 None:intergenic 15.0%
!!! AATACTGATTAATTAATGTT+TGG + tig0019464:118225-118244 Msa1373950:intron 15.0%
!! ATATTTGAATACATGAATTA+TGG - tig0019464:119579-119598 None:intergenic 15.0%
!! TTGTTTATCAATATATTCAT+TGG + tig0019464:119677-119696 Msa1373950:CDS 15.0%
!! CAAGTTATGGTTATATATAT+TGG - tig0019464:116949-116968 None:intergenic 20.0%
!! TAAAAATGATGAAGTGAAAA+TGG + tig0019464:117125-117144 Msa1373950:intron 20.0%
!!! GTTTGTTGTTGTTTTATTAT+AGG + tig0019464:117159-117178 Msa1373950:intron 20.0%
!!! TGTTGTTTTATTATAGGTAT+TGG + tig0019464:117165-117184 Msa1373950:intron 20.0%
!!! AAATGGTAAGCTTTTTTTTT+TGG + tig0019464:117324-117343 Msa1373950:intron 20.0%
!!! TTTTTATTAGATAGAACTTG+TGG + tig0019464:117445-117464 Msa1373950:intron 20.0%
!!! ACAATTATTTGTTAGACTTT+AGG - tig0019464:117826-117845 None:intergenic 20.0%
!! TTGTTAGTTAGAAATATACT+CGG + tig0019464:117842-117861 Msa1373950:intron 20.0%
!! AAACACAAAAAAATATCTCA+TGG - tig0019464:118003-118022 None:intergenic 20.0%
!!! TTTTTGTGTTTATATCCAAA+TGG + tig0019464:118012-118031 Msa1373950:intron 20.0%
!!! TATAGTAAGGTTTTTATCAT+TGG + tig0019464:118164-118183 Msa1373950:intron 20.0%
!! ACAACATGCATATATATTAT+AGG - tig0019464:118256-118275 None:intergenic 20.0%
!!! GGTAATTTTTTCTTTTCAAA+AGG + tig0019464:118454-118473 Msa1373950:intron 20.0%
!!! GTTTCTTAGTACATTTTATA+TGG - tig0019464:118548-118567 None:intergenic 20.0%
!! ATTGGATATAAATATGTTGA+AGG - tig0019464:118636-118655 None:intergenic 20.0%
!!! ACTTTATTTATCAAGAAAGA+TGG + tig0019464:118736-118755 Msa1373950:CDS 20.0%
!! TAATAGTCTCTAATTTCTAT+TGG - tig0019464:118966-118985 None:intergenic 20.0%
!! ATAAATGAAAATCTCTCATT+TGG + tig0019464:118988-119007 Msa1373950:intron 20.0%
!! AACATTAAATAAATTGACCA+CGG + tig0019464:119181-119200 Msa1373950:CDS 20.0%
!! CTTACAAATTATTTACTACT+AGG + tig0019464:119395-119414 Msa1373950:intron 20.0%
!! ATATATCATGCACAATAATA+AGG - tig0019464:119622-119641 None:intergenic 20.0%
!!! AGTTGCAAAATTCATTTTTT+AGG + tig0019464:120317-120336 Msa1373950:three_prime_UTR 20.0%
!!! TCATTTTTTAGGTTTTATGA+AGG + tig0019464:120328-120347 Msa1373950:three_prime_UTR 20.0%
!! CAAAAACAGAATTCAAGTTA+TGG - tig0019464:116962-116981 None:intergenic 25.0%
! GTATAGAAACGAAATTACAA+TGG + tig0019464:117346-117365 Msa1373950:intron 25.0%
! TTGTGAGAAATACATTGTAT+CGG + tig0019464:117485-117504 Msa1373950:intron 25.0%
! AAAAGATTTGATTACCTTAG+AGG - tig0019464:117760-117779 None:intergenic 25.0%
! ATAAAGAAGATGTGATATGT+CGG - tig0019464:117945-117964 None:intergenic 25.0%
!! TAAGGTTTTTATCATTGGAA+AGG + tig0019464:118169-118188 Msa1373950:intron 25.0%
!! AAGGTTTTTATCATTGGAAA+GGG + tig0019464:118170-118189 Msa1373950:intron 25.0%
!! AATTAAAAAGTGCAATGACT+AGG + tig0019464:118381-118400 Msa1373950:CDS 25.0%
! TAATTTCTTGTAGATAAGAG+AGG + tig0019464:118673-118692 Msa1373950:intron 25.0%
!!! TGTATTTTTGAACCTTGATA+TGG - tig0019464:118815-118834 None:intergenic 25.0%
!!! CTAATTTCTATTGGTTTTTC+TGG - tig0019464:118957-118976 None:intergenic 25.0%
! ATACATCATAAGCTAATTCA+TGG - tig0019464:119111-119130 None:intergenic 25.0%
! TCCATCAATTTGTATGAAAT+AGG - tig0019464:119162-119181 None:intergenic 25.0%
!! TGATTTCTGTTTTACACTTT+AGG + tig0019464:119264-119283 Msa1373950:intron 25.0%
! CTGTATGTTAATGTAATCTT+CGG - tig0019464:119311-119330 None:intergenic 25.0%
! TTAACATACAGGTAAGTTTA+AGG + tig0019464:119320-119339 Msa1373950:intron 25.0%
! TAACATACAGGTAAGTTTAA+GGG + tig0019464:119321-119340 Msa1373950:intron 25.0%
! TCAAATTTGCACACATATAT+TGG + tig0019464:119453-119472 Msa1373950:intron 25.0%
! TCACGCATATGTATTTAAAT+GGG + tig0019464:119746-119765 Msa1373950:CDS 25.0%
! ATTAGACAGAAAAAGAGAAT+CGG + tig0019464:119823-119842 Msa1373950:intron 25.0%
! TTTAGTTGCAAAATACAAAG+TGG + tig0019464:120377-120396 Msa1373950:three_prime_UTR 25.0%
AAACTACTATTTCAAGAAGC+TGG + tig0019464:116734-116753 Msa1373950:CDS 30.0%
ATACTATATCTCTACCATCA+CGG - tig0019464:116771-116790 None:intergenic 30.0%
TGATGGTAGAGATATAGTAT+TGG + tig0019464:116771-116790 Msa1373950:CDS 30.0%
! TAGAGATATAGTATTGGATG+TGG + tig0019464:116777-116796 Msa1373950:CDS 30.0%
TAAGTATGCTATTATGCGTT+TGG + tig0019464:116801-116820 Msa1373950:CDS 30.0%
TCTAGTGTTGTATAGTTTCA+TGG + tig0019464:117545-117564 Msa1373950:intron 30.0%
TCAGTTAAGGTTAGATTGTT+TGG - tig0019464:117874-117893 None:intergenic 30.0%
GTGTTTATATCCAAATGGTT+AGG + tig0019464:118017-118036 Msa1373950:intron 30.0%
TTATATCCAAATGGTTAGGA+TGG + tig0019464:118021-118040 Msa1373950:intron 30.0%
! AGGTTTTTATCATTGGAAAG+GGG + tig0019464:118171-118190 Msa1373950:intron 30.0%
TGCATGTTGTCACAAAATTA+TGG + tig0019464:118266-118285 Msa1373950:intron 30.0%
CGATTATTAAGGAGTAGAAA+GGG - tig0019464:118300-118319 None:intergenic 30.0%
ACGATTATTAAGGAGTAGAA+AGG - tig0019464:118301-118320 None:intergenic 30.0%
AACCAAAGTGACGATTATTA+AGG - tig0019464:118311-118330 None:intergenic 30.0%
!! AGACATTTAATTTGACGACT+AGG - tig0019464:118480-118499 None:intergenic 30.0%
CGTCAAATTAAATGTCTCAA+CGG + tig0019464:118483-118502 Msa1373950:intron 30.0%
! CTAATTCATGGAAATGGATT+AGG - tig0019464:119099-119118 None:intergenic 30.0%
CATAAGCTAATTCATGGAAA+TGG - tig0019464:119105-119124 None:intergenic 30.0%
GCCTATTTCATACAAATTGA+TGG + tig0019464:119158-119177 Msa1373950:CDS 30.0%
CGAAGATTACATTAACATAC+AGG + tig0019464:119309-119328 Msa1373950:CDS 30.0%
! CCATTTAAGTTAACTACTTC+CGG + tig0019464:119429-119448 Msa1373950:intron 30.0%
ATATGTGTGCAAATTTGAAC+CGG - tig0019464:119451-119470 None:intergenic 30.0%
! ATACCTGAATCAGTTGATTT+CGG - tig0019464:119550-119569 None:intergenic 30.0%
TATTGATAAACAAACAGTCC+CGG - tig0019464:119670-119689 None:intergenic 30.0%
GTATGAACATTCCATATACA+TGG + tig0019464:119715-119734 Msa1373950:CDS 30.0%
ATTCCATATACATGGAAAGA+AGG + tig0019464:119723-119742 Msa1373950:CDS 30.0%
GTCACGCATATGTATTTAAA+TGG + tig0019464:119745-119764 Msa1373950:CDS 30.0%
CGATATTATGGACAAAAAGA+AGG - tig0019464:119935-119954 None:intergenic 30.0%
ACACTTTCGACTTAATATTC+TGG - tig0019464:120026-120045 None:intergenic 30.0%
!! TTGGTGCTATATATCGAAAT+TGG - tig0019464:120070-120089 None:intergenic 30.0%
CTCAAAGATCTTCTATATCT+TGG - tig0019464:120200-120219 None:intergenic 30.0%
AGCAATACTTGCAAAATAAC+AGG + tig0019464:120224-120243 Msa1373950:three_prime_UTR 30.0%
GAGTTGCAATCAATTTATGT+GGG + tig0019464:120246-120265 Msa1373950:three_prime_UTR 30.0%
GGCAATAGCTTGATTTATAA+TGG + tig0019464:120267-120286 Msa1373950:three_prime_UTR 30.0%
TGCAAGAGATCTTCGAATAA+TGG + tig0019464:116834-116853 Msa1373950:CDS 35.0%
AGTCATTGTTCTCAATCTAG+AGG + tig0019464:116900-116919 Msa1373950:intron 35.0%
CACATAACTCTTCTTCTACT+TGG - tig0019464:117279-117298 None:intergenic 35.0%
GAAGAGTTATGTGTTCAAGA+AGG + tig0019464:117286-117305 Msa1373950:CDS 35.0%
TTATGTGTTCAAGAAGGTGA+AGG + tig0019464:117292-117311 Msa1373950:CDS 35.0%
!! AATGGGAAATTGACTTGTGT+TGG + tig0019464:117612-117631 Msa1373950:intron 35.0%
TTTGTAGTTTCCTTGATGCA+CGG + tig0019464:117688-117707 Msa1373950:CDS 35.0%
TTTGGATGAACTAACCTCTA+AGG + tig0019464:117743-117762 Msa1373950:CDS 35.0%
CTCCTTAATAATCGTCACTT+TGG + tig0019464:118306-118325 Msa1373950:intron 35.0%
!!! TCTCAACGGTTTTTTACCAT+TGG + tig0019464:118497-118516 Msa1373950:intron 35.0%
ACCATTGGTACTGTATTACA+AGG + tig0019464:118512-118531 Msa1373950:intron 35.0%
ACCTTGTAATACAGTACCAA+TGG - tig0019464:118516-118535 None:intergenic 35.0%
TGTCATCATCATCATCAAGT+AGG - tig0019464:118709-118728 None:intergenic 35.0%
!! ACTTGATGATGATGATGACA+TGG + tig0019464:118709-118728 Msa1373950:CDS 35.0%
AAAATACACAGATCAAGCAG+AGG + tig0019464:118827-118846 Msa1373950:CDS 35.0%
TGAAGTTGTCTGATCAAGAT+CGG + tig0019464:119024-119043 Msa1373950:CDS 35.0%
TGAATAATGTCGTTCTTTGC+AGG + tig0019464:119136-119155 Msa1373950:intron 35.0%
TTAGTTCACTGTTATTACCG+TGG - tig0019464:119201-119220 None:intergenic 35.0%
CCGGAAGTAGTTAACTTAAA+TGG - tig0019464:119432-119451 None:intergenic 35.0%
! TCATTGGTAGCTGCAATATT+TGG + tig0019464:119693-119712 Msa1373950:CDS 35.0%
TGACCTTCTTTCCATGTATA+TGG - tig0019464:119729-119748 None:intergenic 35.0%
TGGGTTCAAATTGCATCTTT+AGG + tig0019464:119879-119898 Msa1373950:intron 35.0%
GTTCAAATTGCATCTTTAGG+TGG + tig0019464:119882-119901 Msa1373950:intron 35.0%
ATTCTTACTGGAATGGTTTG+TGG + tig0019464:119907-119926 Msa1373950:CDS 35.0%
! CTATATATCGAAATTGGCCT+TGG - tig0019464:120064-120083 None:intergenic 35.0%
GGAGTTGCAATCAATTTATG+TGG + tig0019464:120245-120264 Msa1373950:three_prime_UTR 35.0%
GTGGAAGGATATGAAAGAAG+AGG - tig0019464:116862-116881 None:intergenic 40.0%
TCATATCCTTCCACCATTCT+TGG + tig0019464:116868-116887 Msa1373950:CDS 40.0%
TTTCTCTCTTCCAAGAATGG+TGG - tig0019464:116881-116900 None:intergenic 40.0%
GACTTTCTCTCTTCCAAGAA+TGG - tig0019464:116884-116903 None:intergenic 40.0%
AGCTATAATCACTGCTGAAG+AGG + tig0019464:117024-117043 Msa1373950:CDS 40.0%
GCACAACATCATCATCCATT+GGG - tig0019464:117198-117217 None:intergenic 40.0%
TTGTTGAAGAGCTACGAAGA+AGG + tig0019464:117221-117240 Msa1373950:CDS 40.0%
!! TTAGGTTGAATGCCGTAATC+AGG - tig0019464:117414-117433 None:intergenic 40.0%
! TCCATTTGAGTTTCGAGCTT+TGG + tig0019464:117647-117666 Msa1373950:CDS 40.0%
TCCAAAGCTCGAAACTCAAA+TGG - tig0019464:117651-117670 None:intergenic 40.0%
!! TCGAGCTTTGGAAGTTGTAT+TGG + tig0019464:117659-117678 Msa1373950:CDS 40.0%
!! AGCTTTGGAAGTTGTATTGG+AGG + tig0019464:117662-117681 Msa1373950:CDS 40.0%
TATCCAAATGGTTAGGATGG+CGG + tig0019464:118024-118043 Msa1373950:intron 40.0%
ACAGATCAGCAGTCGTAATT+TGG + tig0019464:118346-118365 Msa1373950:intron 40.0%
GTTGACAAATCGTGTTCACA+AGG + tig0019464:118403-118422 Msa1373950:CDS 40.0%
! TATGGACTGTGATGCCAATT+GGG - tig0019464:118797-118816 None:intergenic 40.0%
! ATATGGACTGTGATGCCAAT+TGG - tig0019464:118798-118817 None:intergenic 40.0%
AGAGCTTGAGATGTTACTAG+AGG + tig0019464:118886-118905 Msa1373950:CDS 40.0%
! TCACCGAAATCAACTGATTC+AGG + tig0019464:119544-119563 Msa1373950:CDS 40.0%
CTAGAGCTATTCCTAAGTTC+CGG + tig0019464:119648-119667 Msa1373950:CDS 40.0%
TAGAGCTATTCCTAAGTTCC+GGG + tig0019464:119649-119668 Msa1373950:CDS 40.0%
AGACAGAAAAAGAGAATCGG+TGG + tig0019464:119826-119845 Msa1373950:intron 40.0%
GACAGAAAAAGAGAATCGGT+GGG + tig0019464:119827-119846 Msa1373950:intron 40.0%
CTTTAGGTGGTGATTCTTAC+TGG + tig0019464:119895-119914 Msa1373950:intron 40.0%
! AGTCGAAAGTGTACATAACG+TGG + tig0019464:120034-120053 Msa1373950:intron 40.0%
GTACATAACGTGGAAATCCA+AGG + tig0019464:120044-120063 Msa1373950:intron 40.0%
TAGGTGATGAGATGATGTCT+CGG + tig0019464:120173-120192 Msa1373950:intron 40.0%
! TGGATTTTGCTAGACCGTGA+TGG + tig0019464:116754-116773 Msa1373950:CDS 45.0%
! TCTCTTCCAAGAATGGTGGA+AGG - tig0019464:116877-116896 None:intergenic 45.0%
!! GGTATTGGTTAGAGACCCAA+TGG + tig0019464:117180-117199 Msa1373950:intron 45.0%
GGCACAACATCATCATCCAT+TGG - tig0019464:117199-117218 None:intergenic 45.0%
CTTCGTAGCTCTTCAACAAC+AGG - tig0019464:117220-117239 None:intergenic 45.0%
ACGAAGAAGGTTACCACTCA+AGG + tig0019464:117234-117253 Msa1373950:CDS 45.0%
! AAGGTAAGTGTTGCTGGTCA+AGG + tig0019464:117253-117272 Msa1373950:CDS 45.0%
TGTGTTCAAGAAGGTGAAGG+TGG + tig0019464:117295-117314 Msa1373950:CDS 45.0%
GGTGAAGGTGGAGAAGAAAA+TGG + tig0019464:117307-117326 Msa1373950:CDS 45.0%
AGAAACTCACACACGAGTAG+AGG + tig0019464:117374-117393 Msa1373950:intron 45.0%
! GAGGTTAGTTCATCCAAAGC+TGG - tig0019464:117741-117760 None:intergenic 45.0%
TAAGGAGTAGAAAGGGACGA+GGG - tig0019464:118293-118312 None:intergenic 45.0%
TTAAGGAGTAGAAAGGGACG+AGG - tig0019464:118294-118313 None:intergenic 45.0%
TGGCATCACAGTCCATATCA+AGG + tig0019464:118800-118819 Msa1373950:CDS 45.0%
GAAGTGCAGCAACACTTCAA+GGG + tig0019464:118849-118868 Msa1373950:CDS 45.0%
AAGTGCAGCAACACTTCAAG+GGG + tig0019464:118850-118869 Msa1373950:CDS 45.0%
ATCTCTCATTTGGCGACAGT+CGG + tig0019464:118998-119017 Msa1373950:intron 45.0%
GTTGTCTGATCAAGATCGGA+CGG + tig0019464:119028-119047 Msa1373950:CDS 45.0%
AACAAACAGTCCCGGAACTT+AGG - tig0019464:119662-119681 None:intergenic 45.0%
GGTGGTGATTCTTACTGGAA+TGG + tig0019464:119900-119919 Msa1373950:intron 45.0%
GCGTCGAGCATACGATATTA+TGG - tig0019464:119947-119966 None:intergenic 45.0%
ATATCGTATGCTCGACGCAA+AGG + tig0019464:119949-119968 Msa1373950:CDS 45.0%
TGAAGATCGATGCACCTTGT+TGG + tig0019464:119994-120013 Msa1373950:three_prime_UTR 45.0%
GAAGATCGATGCACCTTGTT+GGG + tig0019464:119995-120014 Msa1373950:three_prime_UTR 45.0%
TATTCTGGTACCTCCCAACA+AGG - tig0019464:120011-120030 None:intergenic 45.0%
!!! TTTTTTCTTAAAAAAAAAAT+AGG + tig0019464:120154-120173 Msa1373950:intron 5.0%
!! GGCTCTTGCTAGTTCTGAAG+TGG + tig0019464:116681-116700 Msa1373950:CDS 50.0%
CCAGCAACACTTACCTTGAG+TGG - tig0019464:117250-117269 None:intergenic 50.0%
! CCACTCAAGGTAAGTGTTGC+TGG + tig0019464:117247-117266 Msa1373950:CDS 50.0%
TCACACACGAGTAGAGGAAC+CGG + tig0019464:117380-117399 Msa1373950:intron 50.0%
ACTCTCTTGTCCGTGCATCA+AGG - tig0019464:117701-117720 None:intergenic 50.0%
TGATGCACGGACAAGAGAGT+TGG + tig0019464:117701-117720 Msa1373950:CDS 50.0%
! GACTGCTGCTTATCCAGCTT+TGG + tig0019464:117725-117744 Msa1373950:CDS 50.0%
GTCGGTGATGTGATGAGAAG+AGG - tig0019464:117927-117946 None:intergenic 50.0%
TAGCCGCCATCCTAACCATT+TGG - tig0019464:118030-118049 None:intergenic 50.0%
!! TCTCCCTCAAGTAGCTCTGA+CGG + tig0019464:118770-118789 Msa1373950:CDS 50.0%
! GGAAGTGCAGCAACACTTCA+AGG + tig0019464:118848-118867 Msa1373950:CDS 50.0%
!! CTCGACGCAAAGGTCTTGTT+GGG + tig0019464:119959-119978 Msa1373950:CDS 50.0%
CACACACGAGTAGAGGAACC+GGG + tig0019464:117381-117400 Msa1373950:intron 55.0%
CCGTAATCAGGTTCGAGTCC+CGG - tig0019464:117402-117421 None:intergenic 55.0%
CCGGGACTCGAACCTGATTA+CGG + tig0019464:117399-117418 Msa1373950:intron 55.0%
GTCAGAGCTACTTGAGGGAG+AGG - tig0019464:118771-118790 None:intergenic 55.0%
GGACCGTCAGAGCTACTTGA+GGG - tig0019464:118776-118795 None:intergenic 55.0%
!! GTAGCTCTGACGGTCCCAAT+TGG + tig0019464:118780-118799 Msa1373950:CDS 55.0%
! GCTCGACGCAAAGGTCTTGT+TGG + tig0019464:119958-119977 Msa1373950:CDS 55.0%
GATCGATGCACCTTGTTGGG+AGG + tig0019464:119998-120017 Msa1373950:three_prime_UTR 55.0%
GGGACCGTCAGAGCTACTTG+AGG - tig0019464:118777-118796 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0019464 gene 116679 120412 116679 ID=Msa1373950;Name=Msa1373950
tig0019464 mRNA 116679 120412 116679 ID=Msa1373950-mRNA-1;Parent=Msa1373950;Name=Msa1373950-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.75|0.84|0.92|0.91|0.84|13|269|392
tig0019464 exon 116679 116900 116679 ID=Msa1373950-mRNA-1:exon:3591;Parent=Msa1373950-mRNA-1
tig0019464 exon 117016 117045 117016 ID=Msa1373950-mRNA-1:exon:3592;Parent=Msa1373950-mRNA-1
tig0019464 exon 117181 117328 117181 ID=Msa1373950-mRNA-1:exon:3593;Parent=Msa1373950-mRNA-1
tig0019464 exon 117643 117764 117643 ID=Msa1373950-mRNA-1:exon:3594;Parent=Msa1373950-mRNA-1
tig0019464 exon 118350 118424 118350 ID=Msa1373950-mRNA-1:exon:3595;Parent=Msa1373950-mRNA-1
tig0019464 exon 118686 118907 118686 ID=Msa1373950-mRNA-1:exon:3596;Parent=Msa1373950-mRNA-1
tig0019464 exon 119017 119049 119017 ID=Msa1373950-mRNA-1:exon:3597;Parent=Msa1373950-mRNA-1
tig0019464 exon 119158 119202 119158 ID=Msa1373950-mRNA-1:exon:3598;Parent=Msa1373950-mRNA-1
tig0019464 exon 119286 119330 119286 ID=Msa1373950-mRNA-1:exon:3599;Parent=Msa1373950-mRNA-1
tig0019464 exon 119536 119565 119536 ID=Msa1373950-mRNA-1:exon:3600;Parent=Msa1373950-mRNA-1
tig0019464 exon 119648 119767 119648 ID=Msa1373950-mRNA-1:exon:3601;Parent=Msa1373950-mRNA-1
tig0019464 exon 119901 120019 119901 ID=Msa1373950-mRNA-1:exon:3602;Parent=Msa1373950-mRNA-1
tig0019464 exon 120176 120412 120176 ID=Msa1373950-mRNA-1:exon:3603;Parent=Msa1373950-mRNA-1
tig0019464 CDS 116679 116900 116679 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 117016 117045 117016 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 117181 117328 117181 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 117643 117764 117643 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 118350 118424 118350 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 118686 118907 118686 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 119017 119049 119017 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 119158 119202 119158 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 119286 119330 119286 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 119536 119565 119536 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 119648 119767 119648 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 CDS 119901 119987 119901 ID=Msa1373950-mRNA-1:cds;Parent=Msa1373950-mRNA-1
tig0019464 three_prime_UTR 119988 120019 119988 ID=Msa1373950-mRNA-1:three_prime_utr;Parent=Msa1373950-mRNA-1
tig0019464 three_prime_UTR 120176 120412 120176 ID=Msa1373950-mRNA-1:three_prime_utr;Parent=Msa1373950-mRNA-1
Gene Sequence

>Msa1373950

ATGGCTCTTGCTAGTTCTGAAGTGGAGCTTAAAGTTCAAGCTATGAATAAGAAGAAAACTACTATTTCAAGAAGCTGGATTTTGCTAGACCGTGATGGTAGAGATATAGTATTGGATGTGGATAAGTATGCTATTATGCGTTTGGTTGAAATTCATGCAAGAGATCTTCGAATAATGGATCCTCTTCTTTCATATCCTTCCACCATTCTTGGAAGAGAGAAACACATAAAAGCTATAATCACTGCTGAAGAGGTATTGGTTAGAGACCCAATGGATGATGATGTTGTGCCTGTTGTTGAAGAGCTACGAAGAAGGTTACCACTCAAGGTAAGTGTTGCTGGTCAAGGCCAAGTAGAAGAAGAGTTATGTGTTCAAGAAGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGTTTCGAGCTTTGGAAGTTGTATTGGAGGCAATTTGTAGTTTCCTTGATGCACGGACAAGAGAGTTGGAGACTGCTGCTTATCCAGCTTTGGATGAACTAACCTCTAAGATCAGCAGTCGTAATTTGGATAAAGTGCGAAAATTAAAAAGTGCAATGACTAGGTTGACAAATCGTGTTCACAAGATAAGAGAGGAACTAGAAAACCTACTTGATGATGATGATGACATGGCTGAACTTTATTTATCAAGAAAGATGGCTGTTTCATCCTCTCCCTCAAGTAGCTCTGACGGTCCCAATTGGCATCACAGTCCATATCAAGGTTCAAAAATACACAGATCAAGCAGAGGAAGTGCAGCAACACTTCAAGGGGAGAATGATGTTGAAGAGCTTGAGATGTTACTAGAGTCGGCGTTGAAGTTGTCTGATCAAGATCGGACGGCCTATTTCATACAAATTGATGGAACATTAAATAAATTGACCACGGTGCGAGAGTATATTGATGACACCGAAGATTACATTAACATACAGCTTGATAATCACCGAAATCAACTGATTCAGCTAGAGCTATTCCTAAGTTCCGGGACTGTTTGTTTATCAATATATTCATTGGTAGCTGCAATATTTGGTATGAACATTCCATATACATGGAAAGAAGGTCACGCATATGTATTTAAATGGGTGGTGATTCTTACTGGAATGGTTTGTGGAACCTTCTTTTTGTCCATAATATCGTATGCTCGACGCAAAGGTCTTGTTGGGTCTTGA

Protein sequence

>Msa1373950

MALASSEVELKVQAMNKKKTTISRSWILLDRDGRDIVLDVDKYAIMRLVEIHARDLRIMDPLLSYPSTILGREKHIKAIITAEEVLVRDPMDDDVVPVVEELRRRLPLKVSVAGQGQVEEELCVQEGEGGEENEFPFEFRALEVVLEAICSFLDARTRELETAAYPALDELTSKISSRNLDKVRKLKSAMTRLTNRVHKIREELENLLDDDDDMAELYLSRKMAVSSSPSSSSDGPNWHHSPYQGSKIHRSSRGSAATLQGENDVEELEMLLESALKLSDQDRTAYFIQIDGTLNKLTTVREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWKEGHAYVFKWVVILTGMVCGTFFLSIISYARRKGLVGS*