AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129720 MtrunA17_Chr7g0274601 95.556 270 7 2 1 270 1 265 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129720 AT1G08640.1 59.707 273 96 4 1 270 13 274 1.23e-107 313

Find 54 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCTTTGCTTTCGTTTAT+AGG 0.144704 7_3:+81685626 Msa1129720:CDS
GAAGAAGCAGAGATGATTAT+TGG 0.153927 7_3:-81683153 None:intergenic
CTTTGAATTGAATTTGAAAA+TGG 0.155783 7_3:+81682932 Msa1129720:exon
AAAGAAGGAAGCTGAGATTA+AGG 0.221315 7_3:+81683390 Msa1129720:CDS
ACCTGAGAGAGGTTGAAAAT+TGG 0.242506 7_3:-81683034 None:intergenic
CTTGGTCCCCAAGGTATAAT+TGG 0.268204 7_3:-81684948 None:intergenic
ACTGCTCCGGTCGCTGGCCT+TGG 0.308462 7_3:+81685862 Msa1129720:CDS
TGTTGTTGTTGTTGAATTTA+GGG 0.323553 7_3:-81682983 None:intergenic
TCAGTTGAGTAATCGGAAAA+AGG 0.325391 7_3:+81684338 Msa1129720:CDS
AAATTCAATTCAAAGAGTTT+AGG 0.337707 7_3:-81682924 None:intergenic
ATCGTGTCAAATTTCTCAAT+AGG 0.342314 7_3:-81683346 None:intergenic
TCGTGTCAAATTTCTCAATA+GGG 0.363102 7_3:-81683345 None:intergenic
CCTGAGAGAGGTTGAAAATT+GGG 0.377207 7_3:-81683033 None:intergenic
AAGAAGCAGAGATGATTATT+GGG 0.389670 7_3:-81683152 None:intergenic
TCTTCTTCTGCATCTGCTGC+AGG 0.410429 7_3:+81683180 Msa1129720:CDS
TGATGGCTCAGTTGAGTAAT+CGG 0.411340 7_3:+81684331 Msa1129720:CDS
ATGTATAGCTGTTTCATCCT+TGG 0.412262 7_3:+81685892 Msa1129720:CDS
TATTGAGTAGCTACCTCATA+TGG 0.426931 7_3:-81683231 None:intergenic
AAAGAGACTGCTCCGGTCGC+TGG 0.428177 7_3:+81685856 Msa1129720:CDS
CCCATACGCAGTCCTTCTCC+TGG 0.433111 7_3:-81685833 None:intergenic
AAGAAGGAAGCTGAGATTAA+GGG 0.453722 7_3:+81683391 Msa1129720:CDS
CAAACAGCCAATTATACCTT+GGG 0.467405 7_3:+81684941 Msa1129720:CDS
GGCATATGACAAAGTTATGA+TGG 0.471615 7_3:+81684314 Msa1129720:CDS
CAGGAAGATGGTGAAGATCC+AGG 0.474884 7_3:+81685815 Msa1129720:intron
ATCTCTTCTTTACAACAGTC+AGG 0.475809 7_3:+81686800 Msa1129720:CDS
TCCAGGAGAAGGACTGCGTA+TGG 0.496377 7_3:+81685832 Msa1129720:CDS
TTGTCTTTCTGCAGACAGCT+TGG 0.506000 7_3:+81685560 Msa1129720:intron
CGGTGACTTCAATCCATATG+AGG 0.514774 7_3:+81683218 Msa1129720:CDS
AAATTGGGAACGGAAATAGT+TGG 0.518850 7_3:-81683018 None:intergenic
AGGAACAAGAAGTGTTGGAG+TGG 0.521969 7_3:+81682854 Msa1129720:five_prime_UTR
TGACTGTTGTAAAGAAGAGA+TGG 0.528342 7_3:-81686798 None:intergenic
TATGGATTGAAGTCACCGTT+AGG 0.531428 7_3:-81683213 None:intergenic
AAATTGAATGCAGGTTTCAA+AGG 0.532979 7_3:+81684902 Msa1129720:intron
TGTTCAGGAACAAGAAGTGT+TGG 0.539296 7_3:+81682849 Msa1129720:five_prime_UTR
AATGTTGATCCAGCTCGAAA+AGG 0.548403 7_3:+81684293 Msa1129720:intron
TATGAAACTCACATTAATTG+TGG 0.549027 7_3:-81685689 None:intergenic
GGTTTCCCAAGAAAACATCA+TGG 0.552983 7_3:+81683124 Msa1129720:intron
CAATTATACCTTGGGGACCA+AGG 0.553731 7_3:+81684949 Msa1129720:CDS
ACAAACAGCCAATTATACCT+TGG 0.553845 7_3:+81684940 Msa1129720:CDS
AACATAGTTGAGTCTGCAAG+TGG 0.554259 7_3:+81686768 Msa1129720:CDS
AAATGATGTGCGCATCAACT+TGG 0.557136 7_3:+81685459 Msa1129720:CDS
CCAGGAGAAGGACTGCGTAT+GGG 0.593890 7_3:+81685833 Msa1129720:CDS
GTATGGGAAAGAGACTGCTC+CGG 0.601329 7_3:+81685849 Msa1129720:CDS
GACTGTTGTAAAGAAGAGAT+GGG 0.602985 7_3:-81686797 None:intergenic
GATGGTGAAGATCCAGGAGA+AGG 0.603751 7_3:+81685821 Msa1129720:CDS
ATAACAAACCTTGGTCCCCA+AGG 0.616918 7_3:-81684957 None:intergenic
GGAACAAGAAGTGTTGGAGT+GGG 0.628937 7_3:+81682855 Msa1129720:five_prime_UTR
GCAGGAAGCACTAATCCTAA+CGG 0.643511 7_3:+81683198 Msa1129720:CDS
AAGCCTATAAACGAAAGCAA+AGG 0.649140 7_3:-81685629 None:intergenic
TAATGTTGGATACAGGAAGA+TGG 0.650849 7_3:+81685803 Msa1129720:intron
GAGAGGTTGAAAATTGGGAA+CGG 0.656054 7_3:-81683028 None:intergenic
GAGTGAGTGTTACCTGAGAG+AGG 0.667674 7_3:-81683045 None:intergenic
TCTGCAGACAGCTTGGATCG+CGG 0.669493 7_3:+81685567 Msa1129720:intron
AAACAGCCAATTATACCTTG+GGG 0.721557 7_3:+81684942 Msa1129720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAATAAAAAATAACAT+TGG - chr7_3:81683506-81683525 None:intergenic 10.0%
!!! ATTATTGTTGTATAGATTTT+AGG + chr7_3:81683316-81683335 Msa1129720:intron 15.0%
!!! GAAATAATTAAAAGCATTAT+GGG - chr7_3:81684187-81684206 None:intergenic 15.0%
!!! TAATTATTTCGTTTTTTATG+AGG + chr7_3:81684197-81684216 Msa1129720:intron 15.0%
!! AAGAAAAACATATAACTATA+TGG - chr7_3:81684234-81684253 None:intergenic 15.0%
!! ATTTAAATACAAATTACTCA+TGG - chr7_3:81685208-81685227 None:intergenic 15.0%
!!! AATTTTCATTTAATCTTTGT+TGG + chr7_3:81686349-81686368 Msa1129720:intron 15.0%
!!! AATTTTAAAGAAGAAATTTG+TGG + chr7_3:81686390-81686409 Msa1129720:intron 15.0%
!! AAATTCAATTCAAAGAGTTT+AGG - chr7_3:81682927-81682946 None:intergenic 20.0%
!! CTTTGAATTGAATTTGAAAA+TGG + chr7_3:81682932-81682951 Msa1129720:exon 20.0%
!!! GGCAAAAAAATTTTTGATTT+TGG + chr7_3:81683474-81683493 Msa1129720:intron 20.0%
!!! ACAGATTTTCATATACTTAA+GGG - chr7_3:81683577-81683596 None:intergenic 20.0%
!! AGACAAAAACAAAATGAAAA+AGG + chr7_3:81683663-81683682 Msa1129720:intron 20.0%
!! GACAAAAACAAAATGAAAAA+GGG + chr7_3:81683664-81683683 Msa1129720:intron 20.0%
!! GAAATTAAAATCGATTGAAA+GGG - chr7_3:81683814-81683833 None:intergenic 20.0%
!! AGAAATTAAAATCGATTGAA+AGG - chr7_3:81683815-81683834 None:intergenic 20.0%
!!! CGAAATAATTAAAAGCATTA+TGG - chr7_3:81684188-81684207 None:intergenic 20.0%
!!! AATTTTGTATACGAAGAATT+TGG + chr7_3:81684623-81684642 Msa1129720:intron 20.0%
!!! ATTTTGTATACGAAGAATTT+GGG + chr7_3:81684624-81684643 Msa1129720:intron 20.0%
!! ATAATGATTAATCGTATTCT+TGG - chr7_3:81684709-81684728 None:intergenic 20.0%
!! AGCAAATAAACAAAATGTTA+GGG - chr7_3:81684859-81684878 None:intergenic 20.0%
!! AAGCAAATAAACAAAATGTT+AGG - chr7_3:81684860-81684879 None:intergenic 20.0%
!!! ATATTTTCTAAATTGAATGC+AGG + chr7_3:81684893-81684912 Msa1129720:intron 20.0%
!!! ATTTATTTTCATCTACAGTT+TGG + chr7_3:81685230-81685249 Msa1129720:intron 20.0%
!!! ATTCTAAGATTGTATTGAAT+AGG - chr7_3:81685726-81685745 None:intergenic 20.0%
!! TAATTCAACATGGTTAAAAA+TGG - chr7_3:81685752-81685771 None:intergenic 20.0%
!!! ATTCTATTGATAATTCAACA+TGG - chr7_3:81685762-81685781 None:intergenic 20.0%
!! TTAATTATTGTAGATTACAG+AGG - chr7_3:81685984-81686003 None:intergenic 20.0%
!! GTAATCTACAATAATTAACA+AGG + chr7_3:81685986-81686005 Msa1129720:intron 20.0%
!!! TGTCTTTTTAAAGAAAAAGA+TGG + chr7_3:81686041-81686060 Msa1129720:intron 20.0%
!! TGTCATGATGAAAAATAATT+TGG - chr7_3:81686307-81686326 None:intergenic 20.0%
!! ATAAGAAAATAGAAAACTTC+AGG - chr7_3:81686654-81686673 None:intergenic 20.0%
!! AGAAACTATTAATCTTTATC+TGG - chr7_3:81686713-81686732 None:intergenic 20.0%
!! AGATAAAGATTAATAGTTTC+TGG + chr7_3:81686712-81686731 Msa1129720:intron 20.0%
!! TGTTGTTGTTGTTGAATTTA+GGG - chr7_3:81682986-81683005 None:intergenic 25.0%
!! TTGTTGTTGTTGTTGAATTT+AGG - chr7_3:81682987-81683006 None:intergenic 25.0%
!!! AGTGTTTTTTTAGAAGAAGA+AGG - chr7_3:81683074-81683093 None:intergenic 25.0%
!! TTATTCCATGATGTTTTCTT+GGG - chr7_3:81683132-81683151 None:intergenic 25.0%
! AGCATATACTAAGAAAAAGA+AGG + chr7_3:81683375-81683394 Msa1129720:CDS 25.0%
! ATTAGTTAGTTAACATACTC+TGG - chr7_3:81683434-81683453 None:intergenic 25.0%
!!! TTAACTCTTCTCTATTTTTC+TGG + chr7_3:81683453-81683472 Msa1129720:intron 25.0%
! TTGACTATCAATATGGTTTA+GGG - chr7_3:81683548-81683567 None:intergenic 25.0%
!! GACAGATTTTCATATACTTA+AGG - chr7_3:81683578-81683597 None:intergenic 25.0%
!! AAATTTAATGTACTGACACA+TGG + chr7_3:81684254-81684273 Msa1129720:intron 25.0%
!! AATTTAATGTACTGACACAT+GGG + chr7_3:81684255-81684274 Msa1129720:intron 25.0%
!!! AGATACTTCTTAGTTTGTTT+TGG + chr7_3:81684457-81684476 Msa1129720:intron 25.0%
! TCTTCGTATACAAAATTGAT+AGG - chr7_3:81684620-81684639 None:intergenic 25.0%
!!! CATTGTAATGAAAAGTGTTA+AGG - chr7_3:81684677-81684696 None:intergenic 25.0%
! TGGGGGAATTAATTTATTTA+AGG - chr7_3:81684784-81684803 None:intergenic 25.0%
! AAATGTTAGGGTGAAATATT+GGG - chr7_3:81684847-81684866 None:intergenic 25.0%
! AAAATGTTAGGGTGAAATAT+TGG - chr7_3:81684848-81684867 None:intergenic 25.0%
! ATGGTTGAATTGTGTTAATT+AGG + chr7_3:81685095-81685114 Msa1129720:intron 25.0%
! AGCAGTAATAAAAGAGTAAT+TGG - chr7_3:81685144-81685163 None:intergenic 25.0%
! ATGGCATGTTTAATTCATAA+GGG - chr7_3:81685189-81685208 None:intergenic 25.0%
! ATAATGTCAAAAAATCCAAG+TGG - chr7_3:81685399-81685418 None:intergenic 25.0%
!! TTTTGTGAGTAGTAAATGAA+CGG + chr7_3:81685495-81685514 Msa1129720:intron 25.0%
! TATGAAACTCACATTAATTG+TGG - chr7_3:81685692-81685711 None:intergenic 25.0%
!! TTCATGAATCATGATAATGT+TGG + chr7_3:81685789-81685808 Msa1129720:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr7_3:81686159-81686178 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr7_3:81686158-81686177 Msa1129720:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr7_3:81686171-81686190 Msa1129720:intron 25.0%
! TTGTCAAAATATCATTTCTC+TGG + chr7_3:81686274-81686293 Msa1129720:intron 25.0%
! TGTCAAAATATCATTTCTCT+GGG + chr7_3:81686275-81686294 Msa1129720:intron 25.0%
! TTTAAAGAAGAAATTTGTGG+CGG + chr7_3:81686393-81686412 Msa1129720:intron 25.0%
AAAAAACACTGCTTTCTTAC+TGG + chr7_3:81683084-81683103 Msa1129720:intron 30.0%
AAAAACACTGCTTTCTTACT+GGG + chr7_3:81683085-81683104 Msa1129720:intron 30.0%
! GTTATTCCATGATGTTTTCT+TGG - chr7_3:81683133-81683152 None:intergenic 30.0%
AAGAAGCAGAGATGATTATT+GGG - chr7_3:81683155-81683174 None:intergenic 30.0%
TCGTGTCAAATTTCTCAATA+GGG - chr7_3:81683348-81683367 None:intergenic 30.0%
ATCGTGTCAAATTTCTCAAT+AGG - chr7_3:81683349-81683368 None:intergenic 30.0%
GTTGACTATCAATATGGTTT+AGG - chr7_3:81683549-81683568 None:intergenic 30.0%
! GAGTAAGTTGACTATCAATA+TGG - chr7_3:81683555-81683574 None:intergenic 30.0%
TCTCTAACATCTTAATAGCA+AGG + chr7_3:81683605-81683624 Msa1129720:intron 30.0%
AATAGCAAGGACTATATTGA+TGG + chr7_3:81683618-81683637 Msa1129720:intron 30.0%
GACAATTGAACTGAAATACT+GGG + chr7_3:81683898-81683917 Msa1129720:intron 30.0%
AGAAAAGAATAGAGACCTTA+AGG - chr7_3:81684037-81684056 None:intergenic 30.0%
! GTCTCTATTCTTTTCTTCTA+AGG + chr7_3:81684041-81684060 Msa1129720:intron 30.0%
CAAATTTGTAGAAAGTCACT+TGG - chr7_3:81684163-81684182 None:intergenic 30.0%
! TGTGACTTTTGGATCATTTA+AGG + chr7_3:81684362-81684381 Msa1129720:CDS 30.0%
! TGGATCATTTAAGGTAAAGT+AGG + chr7_3:81684371-81684390 Msa1129720:intron 30.0%
! GTTTTGTGTGCAATTTCAAA+TGG - chr7_3:81684417-81684436 None:intergenic 30.0%
TTGATGTGTTATGCATTCAT+TGG + chr7_3:81684515-81684534 Msa1129720:intron 30.0%
! AATTATTGCTGCTTCATCAA+AGG - chr7_3:81684545-81684564 None:intergenic 30.0%
AATATAGCATAGATGATGTG+GGG - chr7_3:81684802-81684821 None:intergenic 30.0%
CAATATAGCATAGATGATGT+GGG - chr7_3:81684803-81684822 None:intergenic 30.0%
ACAATATAGCATAGATGATG+TGG - chr7_3:81684804-81684823 None:intergenic 30.0%
AATGTTAGGGTGAAATATTG+GGG - chr7_3:81684846-81684865 None:intergenic 30.0%
AAATTGAATGCAGGTTTCAA+AGG + chr7_3:81684902-81684921 Msa1129720:intron 30.0%
CAATTCAACCATAAAGTTTG+TGG - chr7_3:81685087-81685106 None:intergenic 30.0%
CATGGCATGTTTAATTCATA+AGG - chr7_3:81685190-81685209 None:intergenic 30.0%
! ATTTTCATCTACAGTTTGGT+AGG + chr7_3:81685234-81685253 Msa1129720:intron 30.0%
AACATGATGAAATTTGACAG+TGG - chr7_3:81685314-81685333 None:intergenic 30.0%
! ACATTAATTGTGGAGCTTTT+CGG - chr7_3:81685682-81685701 None:intergenic 30.0%
GTGAGTTTCATATTCTATGA+CGG + chr7_3:81685700-81685719 Msa1129720:intron 30.0%
! ATCATGATAATGTTGGATAC+AGG + chr7_3:81685796-81685815 Msa1129720:intron 30.0%
! TGATGATTCATCTGATCTTT+TGG + chr7_3:81685917-81685936 Msa1129720:intron 30.0%
ACTCTTCCACTAAAGTAAAA+CGG - chr7_3:81686094-81686113 None:intergenic 30.0%
TCAACAAAGCTGTCATTAAA+TGG - chr7_3:81686133-81686152 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr7_3:81686184-81686203 Msa1129720:intron 30.0%
! AACCACTTTATGACAACTTT+TGG - chr7_3:81686256-81686275 None:intergenic 30.0%
!!! TTTCTGGTACATTTTTTTGC+AGG + chr7_3:81686728-81686747 Msa1129720:intron 30.0%
AAATTGGGAACGGAAATAGT+TGG - chr7_3:81683021-81683040 None:intergenic 35.0%
GAAGAAGCAGAGATGATTAT+TGG - chr7_3:81683156-81683175 None:intergenic 35.0%
TATTGAGTAGCTACCTCATA+TGG - chr7_3:81683234-81683253 None:intergenic 35.0%
AAAGAAGGAAGCTGAGATTA+AGG + chr7_3:81683390-81683409 Msa1129720:CDS 35.0%
AAGAAGGAAGCTGAGATTAA+GGG + chr7_3:81683391-81683410 Msa1129720:CDS 35.0%
CAATTTGTGACGTCATTGAA+GGG + chr7_3:81683742-81683761 Msa1129720:intron 35.0%
ACCATGTGAGTTGTACTTAA+GGG - chr7_3:81683865-81683884 None:intergenic 35.0%
TACCATGTGAGTTGTACTTA+AGG - chr7_3:81683866-81683885 None:intergenic 35.0%
GGACAATTGAACTGAAATAC+TGG + chr7_3:81683897-81683916 Msa1129720:intron 35.0%
TTAAGGTTATGTGTGGTAGT+TGG - chr7_3:81684020-81684039 None:intergenic 35.0%
AACTACCACACATAACCTTA+AGG + chr7_3:81684019-81684038 Msa1129720:intron 35.0%
TGTAAAGACTAGAGACCTTA+AGG - chr7_3:81684096-81684115 None:intergenic 35.0%
TTGTAGAAAGTCACTTGGTT+TGG - chr7_3:81684158-81684177 None:intergenic 35.0%
GGCATATGACAAAGTTATGA+TGG + chr7_3:81684314-81684333 Msa1129720:CDS 35.0%
TCAGTTGAGTAATCGGAAAA+AGG + chr7_3:81684338-81684357 Msa1129720:CDS 35.0%
CAGTTGAGTAATCGGAAAAA+GGG + chr7_3:81684339-81684358 Msa1129720:CDS 35.0%
TTGTATACGAAGAATTTGGG+AGG + chr7_3:81684627-81684646 Msa1129720:intron 35.0%
ATATAGCATAGATGATGTGG+GGG - chr7_3:81684801-81684820 None:intergenic 35.0%
ATGTTAGGGTGAAATATTGG+GGG - chr7_3:81684845-81684864 None:intergenic 35.0%
ACAAACAGCCAATTATACCT+TGG + chr7_3:81684940-81684959 Msa1129720:CDS 35.0%
CAAACAGCCAATTATACCTT+GGG + chr7_3:81684941-81684960 Msa1129720:CDS 35.0%
AAACAGCCAATTATACCTTG+GGG + chr7_3:81684942-81684961 Msa1129720:CDS 35.0%
TGACAAGCAATAACAAACCT+TGG - chr7_3:81684969-81684988 None:intergenic 35.0%
!!! TGACATGTTAGTTTTGTTGC+TGG + chr7_3:81684996-81685015 Msa1129720:intron 35.0%
! AAAGTTTGTGGACTTTTGGA+GGG - chr7_3:81685075-81685094 None:intergenic 35.0%
! TAAAGTTTGTGGACTTTTGG+AGG - chr7_3:81685076-81685095 None:intergenic 35.0%
! CCATAAAGTTTGTGGACTTT+TGG - chr7_3:81685079-81685098 None:intergenic 35.0%
CCAAAAGTCCACAAACTTTA+TGG + chr7_3:81685076-81685095 Msa1129720:intron 35.0%
GATGAAATTTGACAGTGGAA+AGG - chr7_3:81685309-81685328 None:intergenic 35.0%
TTGTACTTCGATGCAATTTC+AGG + chr7_3:81685419-81685438 Msa1129720:intron 35.0%
TAGCCTTTGCTTTCGTTTAT+AGG + chr7_3:81685626-81685645 Msa1129720:CDS 35.0%
AAGCCTATAAACGAAAGCAA+AGG - chr7_3:81685632-81685651 None:intergenic 35.0%
TAATGTTGGATACAGGAAGA+TGG + chr7_3:81685803-81685822 Msa1129720:intron 35.0%
AGCTATACATCCAAAAACCA+AGG - chr7_3:81685882-81685901 None:intergenic 35.0%
! ATGTATAGCTGTTTCATCCT+TGG + chr7_3:81685892-81685911 Msa1129720:CDS 35.0%
TCAGATGAATCATCATACCA+AGG - chr7_3:81685912-81685931 None:intergenic 35.0%
TTCTCTGATATCCCAGTTTA+TGG + chr7_3:81685957-81685976 Msa1129720:intron 35.0%
TCTCTGATATCCCAGTTTAT+GGG + chr7_3:81685958-81685977 Msa1129720:intron 35.0%
CTCTTCCACTAAAGTAAAAC+GGG - chr7_3:81686093-81686112 None:intergenic 35.0%
GTCCAAAAGTTGTCATAAAG+TGG + chr7_3:81686251-81686270 Msa1129720:intron 35.0%
CAAAATATCATTTCTCTGGG+TGG + chr7_3:81686278-81686297 Msa1129720:intron 35.0%
! ATTAGACTTTTGTACTGTGC+TGG + chr7_3:81686429-81686448 Msa1129720:intron 35.0%
AAGCAATAACATGCCAAGTT+TGG - chr7_3:81686476-81686495 None:intergenic 35.0%
! ACTTGGCATGTTATTGCTTT+TGG + chr7_3:81686477-81686496 Msa1129720:intron 35.0%
!! CTTGGCATGTTATTGCTTTT+GGG + chr7_3:81686478-81686497 Msa1129720:intron 35.0%
GACTGTTGTAAAGAAGAGAT+GGG - chr7_3:81686800-81686819 None:intergenic 35.0%
TGACTGTTGTAAAGAAGAGA+TGG - chr7_3:81686801-81686820 None:intergenic 35.0%
ATCTCTTCTTTACAACAGTC+AGG + chr7_3:81686800-81686819 Msa1129720:CDS 35.0%
! TGTTCAGGAACAAGAAGTGT+TGG + chr7_3:81682849-81682868 Msa1129720:five_prime_UTR 40.0%
GAGAGGTTGAAAATTGGGAA+CGG - chr7_3:81683031-81683050 None:intergenic 40.0%
CCTGAGAGAGGTTGAAAATT+GGG - chr7_3:81683036-81683055 None:intergenic 40.0%
ACCTGAGAGAGGTTGAAAAT+TGG - chr7_3:81683037-81683056 None:intergenic 40.0%
!! CTGGGTTTGGTTCAATTTTC+AGG + chr7_3:81683103-81683122 Msa1129720:intron 40.0%
GGTTTCCCAAGAAAACATCA+TGG + chr7_3:81683124-81683143 Msa1129720:intron 40.0%
! TATGGATTGAAGTCACCGTT+AGG - chr7_3:81683216-81683235 None:intergenic 40.0%
GCAATTTGTGACGTCATTGA+AGG + chr7_3:81683741-81683760 Msa1129720:intron 40.0%
CGTCATTGAAGGGATATTGA+AGG + chr7_3:81683752-81683771 Msa1129720:intron 40.0%
TCCCTTAAGTACAACTCACA+TGG + chr7_3:81683861-81683880 Msa1129720:intron 40.0%
CAACTCACATGGTAGAAAGT+TGG + chr7_3:81683872-81683891 Msa1129720:intron 40.0%
TCACATGGTAGAAAGTTGGA+GGG + chr7_3:81683876-81683895 Msa1129720:intron 40.0%
!! ACATACTAAGTGCTGAGAAG+TGG - chr7_3:81683948-81683967 None:intergenic 40.0%
!!! GCGGCATTTTTTCGTTTCAA+TGG - chr7_3:81683980-81683999 None:intergenic 40.0%
GTTATGTGTGGTAGTTGGTT+TGG - chr7_3:81684015-81684034 None:intergenic 40.0%
AGAGACCTTAAGGTTATGTG+TGG - chr7_3:81684027-81684046 None:intergenic 40.0%
GAGACCTTAAGGCTATGTTT+GGG - chr7_3:81684085-81684104 None:intergenic 40.0%
AGAGACCTTAAGGCTATGTT+TGG - chr7_3:81684086-81684105 None:intergenic 40.0%
AATGTTGATCCAGCTCGAAA+AGG + chr7_3:81684293-81684312 Msa1129720:intron 40.0%
TGATGGCTCAGTTGAGTAAT+CGG + chr7_3:81684331-81684350 Msa1129720:CDS 40.0%
GTGTGCAATTTCAAATGGAC+AGG - chr7_3:81684412-81684431 None:intergenic 40.0%
GTGAAATATTGGGGGGATAT+AGG - chr7_3:81684837-81684856 None:intergenic 40.0%
TGTTAGGGTGAAATATTGGG+GGG - chr7_3:81684844-81684863 None:intergenic 40.0%
!! TTTTGGAGGGGGAAATAACA+TGG - chr7_3:81685062-81685081 None:intergenic 40.0%
!! AAGTTTGTGGACTTTTGGAG+GGG - chr7_3:81685074-81685093 None:intergenic 40.0%
CCAAGTGGCTGATAATAGAA+TGG - chr7_3:81685384-81685403 None:intergenic 40.0%
CCATTCTATTATCAGCCACT+TGG + chr7_3:81685381-81685400 Msa1129720:intron 40.0%
AAATGATGTGCGCATCAACT+TGG + chr7_3:81685459-81685478 Msa1129720:CDS 40.0%
GCAAAGGCTAAAAACTGCAA+AGG - chr7_3:81685616-81685635 None:intergenic 40.0%
ATTACAGAGGCCCATAAACT+GGG - chr7_3:81685971-81685990 None:intergenic 40.0%
CCACTAAAGTAAAACGGGAA+AGG - chr7_3:81686088-81686107 None:intergenic 40.0%
! CCTTTCCCGTTTTACTTTAG+TGG + chr7_3:81686085-81686104 Msa1129720:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr7_3:81686194-81686213 Msa1129720:intron 40.0%
AACATAGTTGAGTCTGCAAG+TGG + chr7_3:81686768-81686787 Msa1129720:CDS 40.0%
!! AGGAACAAGAAGTGTTGGAG+TGG + chr7_3:81682854-81682873 Msa1129720:five_prime_UTR 45.0%
!! GGAACAAGAAGTGTTGGAGT+GGG + chr7_3:81682855-81682874 Msa1129720:five_prime_UTR 45.0%
! CCCAATTTTCAACCTCTCTC+AGG + chr7_3:81683033-81683052 Msa1129720:CDS 45.0%
CACTGCTTTCTTACTGGGTT+TGG + chr7_3:81683090-81683109 Msa1129720:intron 45.0%
!! GCAGGAAGCACTAATCCTAA+CGG + chr7_3:81683198-81683217 Msa1129720:CDS 45.0%
CGGTGACTTCAATCCATATG+AGG + chr7_3:81683218-81683237 Msa1129720:CDS 45.0%
CTCACATGGTAGAAAGTTGG+AGG + chr7_3:81683875-81683894 Msa1129720:intron 45.0%
GAACTGAAATACTGGGACGT+AGG + chr7_3:81683905-81683924 Msa1129720:intron 45.0%
GCTGAGAAGTGGATAATTGC+AGG - chr7_3:81683937-81683956 None:intergenic 45.0%
!! TGTGTGGTAGTTGGTTTGGA+GGG - chr7_3:81684011-81684030 None:intergenic 45.0%
!! ATGTGTGGTAGTTGGTTTGG+AGG - chr7_3:81684012-81684031 None:intergenic 45.0%
CCTTAAGGCTATGTTTGGGA+AGG - chr7_3:81684081-81684100 None:intergenic 45.0%
! CCTTCCCAAACATAGCCTTA+AGG + chr7_3:81684078-81684097 Msa1129720:intron 45.0%
!! GTCACTTGGTTTGGTCTAGA+GGG - chr7_3:81684134-81684153 None:intergenic 45.0%
!! AGTCACTTGGTTTGGTCTAG+AGG - chr7_3:81684135-81684154 None:intergenic 45.0%
! TGGTTTGGAGTCACTTGGTT+TGG - chr7_3:81684143-81684162 None:intergenic 45.0%
!! TCACTTGGTTTGGAGTCACT+TGG - chr7_3:81684148-81684167 None:intergenic 45.0%
!! TGTCATATGCCTTTTCGAGC+TGG - chr7_3:81684305-81684324 None:intergenic 45.0%
!! CGGAAAAAGGGTGTGACTTT+TGG + chr7_3:81684351-81684370 Msa1129720:CDS 45.0%
CTTGGTCCCCAAGGTATAAT+TGG - chr7_3:81684951-81684970 None:intergenic 45.0%
CAATTATACCTTGGGGACCA+AGG + chr7_3:81684949-81684968 Msa1129720:CDS 45.0%
ATAACAAACCTTGGTCCCCA+AGG - chr7_3:81684960-81684979 None:intergenic 45.0%
!! AGTTTGTGGACTTTTGGAGG+GGG - chr7_3:81685073-81685092 None:intergenic 45.0%
TTGTCTTTCTGCAGACAGCT+TGG + chr7_3:81685560-81685579 Msa1129720:intron 45.0%
! GGAGCTTTTCGGAGATTCAA+AGG - chr7_3:81685671-81685690 None:intergenic 45.0%
GATTACAGAGGCCCATAAAC+TGG - chr7_3:81685972-81685991 None:intergenic 45.0%
TGGGATTGTAGGACCAAACT+TGG + chr7_3:81686460-81686479 Msa1129720:intron 45.0%
!!! TTGATTTTATTTAATTATTT+TGG + chr7_3:81685518-81685537 Msa1129720:intron 5.0%
GAGTGAGTGTTACCTGAGAG+AGG - chr7_3:81683048-81683067 None:intergenic 50.0%
TCTTCTTCTGCATCTGCTGC+AGG + chr7_3:81683180-81683199 Msa1129720:CDS 50.0%
!! TGTGGTAGTTGGTTTGGAGG+GGG - chr7_3:81684009-81684028 None:intergenic 50.0%
!! GTGTGGTAGTTGGTTTGGAG+GGG - chr7_3:81684010-81684029 None:intergenic 50.0%
CAGGAAGATGGTGAAGATCC+AGG + chr7_3:81685815-81685834 Msa1129720:intron 50.0%
GATGGTGAAGATCCAGGAGA+AGG + chr7_3:81685821-81685840 Msa1129720:CDS 50.0%
GTATGGGAAAGAGACTGCTC+CGG + chr7_3:81685849-81685868 Msa1129720:CDS 50.0%
TACTGTGCTGGACTTCCACT+GGG + chr7_3:81686441-81686460 Msa1129720:intron 50.0%
TGGACTTCCACTGGGATTGT+AGG + chr7_3:81686449-81686468 Msa1129720:intron 50.0%
GTTTGGTCCTACAATCCCAG+TGG - chr7_3:81686459-81686478 None:intergenic 50.0%
!! TAGTTGGTTTGGAGGGGGGA+GGG - chr7_3:81684004-81684023 None:intergenic 55.0%
!! GTGGTAGTTGGTTTGGAGGG+GGG - chr7_3:81684008-81684027 None:intergenic 55.0%
TCTGCAGACAGCTTGGATCG+CGG + chr7_3:81685567-81685586 Msa1129720:intron 55.0%
TCCAGGAGAAGGACTGCGTA+TGG + chr7_3:81685832-81685851 Msa1129720:CDS 55.0%
CCAGGAGAAGGACTGCGTAT+GGG + chr7_3:81685833-81685852 Msa1129720:CDS 55.0%
CAAAAACCAAGGCCAGCGAC+CGG - chr7_3:81685871-81685890 None:intergenic 55.0%
GTACTGTGCTGGACTTCCAC+TGG + chr7_3:81686440-81686459 Msa1129720:intron 55.0%
!! GTAGTTGGTTTGGAGGGGGG+AGG - chr7_3:81684005-81684024 None:intergenic 60.0%
CCCATACGCAGTCCTTCTCC+TGG - chr7_3:81685836-81685855 None:intergenic 60.0%
AAAGAGACTGCTCCGGTCGC+TGG + chr7_3:81685856-81685875 Msa1129720:CDS 60.0%
!!! CGGTCGCTGGCCTTGGTTTT+TGG + chr7_3:81685869-81685888 Msa1129720:CDS 60.0%
GGTTTGGAGGGGGGAGGGAG+CGG - chr7_3:81683999-81684018 None:intergenic 70.0%
! ACTGCTCCGGTCGCTGGCCT+TGG + chr7_3:81685862-81685881 Msa1129720:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81682839 81686827 81682839 ID=Msa1129720;Name=Msa1129720
chr7_3 mRNA 81682839 81686827 81682839 ID=Msa1129720-mRNA-1;Parent=Msa1129720;Name=Msa1129720-mRNA-1;_AED=0.17;_eAED=0.17;_QI=112|1|0.88|1|1|1|9|0|271
chr7_3 exon 81682839 81683054 81682839 ID=Msa1129720-mRNA-1:exon:23805;Parent=Msa1129720-mRNA-1
chr7_3 exon 81683125 81683239 81683125 ID=Msa1129720-mRNA-1:exon:23806;Parent=Msa1129720-mRNA-1
chr7_3 exon 81683331 81683435 81683331 ID=Msa1129720-mRNA-1:exon:23807;Parent=Msa1129720-mRNA-1
chr7_3 exon 81684306 81684383 81684306 ID=Msa1129720-mRNA-1:exon:23808;Parent=Msa1129720-mRNA-1
chr7_3 exon 81684915 81684970 81684915 ID=Msa1129720-mRNA-1:exon:23809;Parent=Msa1129720-mRNA-1
chr7_3 exon 81685441 81685498 81685441 ID=Msa1129720-mRNA-1:exon:23810;Parent=Msa1129720-mRNA-1
chr7_3 exon 81685574 81685699 81685574 ID=Msa1129720-mRNA-1:exon:23811;Parent=Msa1129720-mRNA-1
chr7_3 exon 81685818 81685913 81685818 ID=Msa1129720-mRNA-1:exon:23812;Parent=Msa1129720-mRNA-1
chr7_3 exon 81686750 81686827 81686750 ID=Msa1129720-mRNA-1:exon:23813;Parent=Msa1129720-mRNA-1
chr7_3 five_prime_UTR 81682839 81682950 81682839 ID=Msa1129720-mRNA-1:five_prime_utr;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81682951 81683054 81682951 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81683125 81683239 81683125 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81683331 81683435 81683331 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81684306 81684383 81684306 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81684915 81684970 81684915 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81685441 81685498 81685441 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81685574 81685699 81685574 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81685818 81685913 81685818 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
chr7_3 CDS 81686750 81686827 81686750 ID=Msa1129720-mRNA-1:cds;Parent=Msa1129720-mRNA-1
Gene Sequence

>Msa1129720

ATGGCTTTGACAATCTCAAACATACTTCACTTCCCTAAATTCAACAACAACAACAACACTAATTCATCCAACTATTTCCGTTCCCAATTTTCAACCTCTCTCAGGTTTCCCAAGAAAACATCATGGAATAACCCAATAATCATCTCTGCTTCTTCTTCTTCTTCTTCTGCATCTGCTGCAGGAAGCACTAATCCTAACGGTGACTTCAATCCATATGAGATTTTAGGTGTAAGCCCTATTGAGAAATTTGACACGATCAAAGCAGCATATACTAAGAAAAAGAAGGAAGCTGAGATTAAGGGTGATGAACAAACTGCTTCCAGACTCGAAAAGGCATATGACAAAGTTATGATGGCTCAGTTGAGTAATCGGAAAAAGGGTGTGACTTTTGGATCATTTAAGGTTTCAAAGGACATAAAGTATGCTGACAAACAGCCAATTATACCTTGGGGACCAAGGTTTGCTAAATCAAGTGAAAATGATGTGCGCATCAACTTGGCAATATCTGCTGTTTTTACAGCTTGGATCGCGGTAACTCAAAGTGCTGAATATAAACCTTTGCAGTTTTTAGCCTTTGCTTTCGTTTATAGGCTTTTTGAGAAGTTAAAATCCTTTGAATCTCCGAAAAGCTCCACAATTAATGAAGATGGTGAAGATCCAGGAGAAGGACTGCGTATGGGAAAGAGACTGCTCCGGTCGCTGGCCTTGGTTTTTGGATGTATAGCTGTTTCATCCTTGGCTTACACTTTCGCTTTGAACATAGTTGAGTCTGCAAGTGGTTATATCCCATCTCTTCTTTACAACAGTCAGGTATAA

Protein sequence

>Msa1129720

MALTISNILHFPKFNNNNNTNSSNYFRSQFSTSLRFPKKTSWNNPIIISASSSSSSASAAGSTNPNGDFNPYEILGVSPIEKFDTIKAAYTKKKKEAEIKGDEQTASRLEKAYDKVMMAQLSNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFAKSSENDVRINLAISAVFTAWIAVTQSAEYKPLQFLAFAFVYRLFEKLKSFESPKSSTINEDGEDPGEGLRMGKRLLRSLALVFGCIAVSSLAYTFALNIVESASGYIPSLLYNSQV*