AlfalfaGEDB | Msa0129510

M. sativa cultivar zhongmu-4 / Msa0129510

KEGG: K11644
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129510	A0A072UV92	61.783	314	78	5	171	444	3	314	1.33e-114	350

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0056030	Msa0129510	0.809387	1.940802e-50	-8.615850e-47
Msa0129510	Msa0148120	0.818274	2.135240e-52	-8.615850e-47
Msa0129510	Msa0241470	0.804265	2.346962e-49	-8.615850e-47
Msa0129510	Msa0265380	0.813472	2.516183e-51	-8.615850e-47
Msa0129510	Msa0268090	0.804738	1.869874e-49	-8.615850e-47
Msa0129510	Msa0279220	0.821444	4.023790e-53	-8.615850e-47
Msa0129510	Msa0303360	0.800054	1.725570e-48	-8.615850e-47
Msa0129510	Msa0406200	0.809089	2.247555e-50	-8.615850e-47
Msa0129510	Msa0412440	0.807771	4.295870e-50	-8.615850e-47
Msa0129510	Msa0456910	0.814584	1.430293e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0129510	MtrunA17_Chr3g0093911	61.783	314	78	5	171	444	3	314	2.55e-118	350
Msa0129510	MtrunA17_Chr1g0207351	61.709	316	74	6	174	444	17	330	9.20e-118	350
Msa0129510	MtrunA17_Chr7g0252101	60.000	320	83	8	166	444	81	396	1.65e-110	333
Msa0129510	MtrunA17_Chr4g0075971	57.460	315	96	5	166	443	251	564	5.33e-103	320
Msa0129510	MtrunA17_Chr3g0077801	52.751	309	109	3	172	443	4	312	3.62e-101	306
Msa0129510	MtrunA17_Chr3g0077901	50.637	314	118	3	166	442	18	331	3.23e-100	305
Msa0129510	MtrunA17_Chr3g0077851	50.508	295	109	3	185	442	1	295	1.25e-91	281
Msa0129510	MtrunA17_Chr3g0112311	50.321	312	113	4	171	443	3	311	7.69e-88	273
Msa0129510	MtrunA17_Chr7g0243331	48.693	306	121	5	173	443	5	309	8.97e-86	267
Msa0129510	MtrunA17_Chr6g0488101	47.059	323	127	5	162	444	92	410	2.65e-84	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 100 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTTCATCGAGTCAGA+TGG	0.590519	1_3:+59493100	Msa0129510:CDS
AAAGTTGGAAAGACATCAAT+TGG	0.370420	1_3:+59492984	Msa0129510:CDS
AAAGTTGGGATGACATCAAT+TGG	0.397689	1_3:+59492792	Msa0129510:CDS
AACCATGAATTATGTCAAAC+TGG	0.381676	1_3:+59496102	Msa0129510:CDS
AAGCAATTCGCGACAAGGCA+AGG	0.533195	1_3:+59492858	Msa0129510:CDS
AAGGAAGATAATCCGAAAAT+TGG	0.254203	1_3:+59492704	Msa0129510:CDS
AATATATGTTGTCACTGACA+AGG	0.670333	1_3:+59495916	Msa0129510:CDS
AATCTAAGGTATAGGACATT+GGG	0.481004	1_3:-59496001	None:intergenic
ACAATGTAATGCGAATTCAG+GGG	0.734319	1_3:+59496243	Msa0129510:CDS
ACACAATGTAATGCGAATTC+AGG	0.312578	1_3:+59496241	Msa0129510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCACAAACAAAGCTTTA+GGG	-	chr1_3:59491353-59491372	None:intergenic	30.0%
AAACTCACAAACAAAGCTTT+AGG	-	chr1_3:59491354-59491373	None:intergenic	30.0%
GTTGAAAAAATAGAGGAAAG+TGG	+	chr1_3:59491610-59491629	Msa0129510:intron	30.0%
GAAAAAAAGAAAGAAGCAAG+TGG	+	chr1_3:59492004-59492023	Msa0129510:intron	30.0%
AATCACAATAGAGAAATGCT+AGG	-	chr1_3:59492465-59492484	None:intergenic	30.0%
GTAGATTGATTATGCACAAT+AGG	-	chr1_3:59492612-59492631	None:intergenic	30.0%
ATTGTGCATAATCAATCTAC+AGG	+	chr1_3:59492612-59492631	Msa0129510:intron	30.0%
AAGGAAGATAATCCGAAAAT+TGG	+	chr1_3:59492704-59492723	Msa0129510:CDS	30.0%
CGTCTTAAATGCAAAAAGTT+GGG	+	chr1_3:59492778-59492797	Msa0129510:CDS	30.0%
AGGGATGAAGAAAAATTGTT+TGG	+	chr1_3:59492824-59492843	Msa0129510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	59491049	59496366	59491049	ID=Msa0129510;Name=Msa0129510
chr1_3	mRNA	59491049	59496366	59491049	ID=Msa0129510-mRNA-1;Parent=Msa0129510;Name=Msa0129510-mRNA-1;_AED=0.19;_eAED=0.19;_QI=153\|0.66\|0.5\|1\|0.66\|0.5\|4\|0\|474
chr1_3	exon	59491049	59491197	59491049	ID=Msa0129510-mRNA-1:exon:19375;Parent=Msa0129510-mRNA-1
chr1_3	exon	59492634	59493133	59492634	ID=Msa0129510-mRNA-1:exon:19376;Parent=Msa0129510-mRNA-1
chr1_3	exon	59495347	59495634	59495347	ID=Msa0129510-mRNA-1:exon:19377;Parent=Msa0129510-mRNA-1
chr1_3	exon	59495726	59496366	59495726	ID=Msa0129510-mRNA-1:exon:19378;Parent=Msa0129510-mRNA-1
chr1_3	five_prime_UTR	59491049	59491197	59491049	ID=Msa0129510-mRNA-1:five_prime_utr;Parent=Msa0129510-mRNA-1
chr1_3	five_prime_UTR	59492634	59492637	59492634	ID=Msa0129510-mRNA-1:five_prime_utr;Parent=Msa0129510-mRNA-1
chr1_3	CDS	59492638	59493133	59492638	ID=Msa0129510-mRNA-1:cds;Parent=Msa0129510-mRNA-1
chr1_3	CDS	59495347	59495634	59495347	ID=Msa0129510-mRNA-1:cds;Parent=Msa0129510-mRNA-1
chr1_3	CDS	59495726	59496366	59495726	ID=Msa0129510-mRNA-1:cds;Parent=Msa0129510-mRNA-1

Gene Sequence

>Msa0129510

ATGGCGGCAAATAGTGATCCAACCAACAATGCGGTGACCCAAAATTGTAAGATTGGAGAGCTTCCCAAGGAAGATAATCCGAAAATTGGATACAATAGTGGTAAGCGTTGGTCAGATGATGAAAACAATGTGCTCAAGTCCGTCTTAAATGCAAAAAGTTGGGATGACATCAATTGGAAAGACATCAGGGATGAAGAAAAATTGTTTGGTCGGGATTTGAAAGCAATTCGCGACAAGGCAAGGAAACTTTTTAAAAAGGAAAGACAAGATCCGAAAATTAGATGCAATATTGGTAAGCCATGGTCAGAGGATGAAAACAATGCGCTCAAGTCCCTCTTAGATGGCAAAAGTTGGAAAGACATCAATTGGAAAGACATAAGGGATGAAGAAAAACTGTTTGGTCGGGAGTTGAATGCGATTCAGGACAAGGCCAGGAAGTTTTTTAAAAAGGAAATACATGAAAAAGAGTTCATCGAGTCAGATGGCAAAAGAAAAGGGAAAAAGGCGATGAAGGTAGCAGAGAACTGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAACACTAGATTTGGACGATCTCTTTCGGTTTTCCGGTGTGTGCAAGAATTGGAGGGCTTTTTATTGGAGAAATTTACTGGCATCGCAAGAACCGTTACTTCTTCAAGTTTCGTATAATCATAAGGAGTCATATTCCTTTATTAGCTTCCCCAACCAAAAGATTTATTGCTTGAAGATGATGGAGTACTTCCTTCACTCTATCTATGTTACGTCTTCTACCGTTAAGTCTAATATTTTTGCTTATCATACCTTACTTGCTTTTGGCAAATGCTCTGATGAATTTGTCTTGTTGGTTTTATGCAAAAGTTCTAGGAGTTTGCGTGTCTATCAATCTCAAAATTGTGGTTGGGTTACTTATTCGATAGTGGGAAAACCAGGGAGGGTTGTTGACTTCATGGTTTTGCATAATATAATATATGTTGTCACTGACAAGGCCAACATAGGGGTACTTAGCTTGAACTATGTAGATATTAAATTTCTAAAACTGAAGACTGTTCCCAATGTCCTATACCTTAGATTGGTCAACTGTAATGAGCAACTTTTAGTGGTTGATTCATCGTTGAAGGAAACAAGGAATATATACAAGATAGACTTCTCAACCATGAATTATGTCAAACTGGAAACTTTGGGCGACATTTCATTATTTCATGCTGCTAACAGAAACTATTATGCATTGAGCAACCCAAATAGGTGGGGATATGAAAGCAACTCTGTGTATGTCATCAGTCGTCTGTATACACAATGTAATGCGAATTCAGGGGATGATAAAAATTACAAAAATGTATCATGCTTCCAGCTCCTCCTTATGGAACAGATTCTCACATGTTGGATTGGTGTTTTAGACATCTACAATATGAGGTAG

Protein sequence

>Msa0129510

MAANSDPTNNAVTQNCKIGELPKEDNPKIGYNSGKRWSDDENNVLKSVLNAKSWDDINWKDIRDEEKLFGRDLKAIRDKARKLFKKERQDPKIRCNIGKPWSEDENNALKSLLDGKSWKDINWKDIRDEEKLFGRELNAIQDKARKFFKKEIHEKEFIESDGKRKGKKAMKVAENCELPWDVLDIISKTLDLDDLFRFSGVCKNWRAFYWRNLLASQEPLLLQVSYNHKESYSFISFPNQKIYCLKMMEYFLHSIYVTSSTVKSNIFAYHTLLAFGKCSDEFVLLVLCKSSRSLRVYQSQNCGWVTYSIVGKPGRVVDFMVLHNIIYVVTDKANIGVLSLNYVDIKFLKLKTVPNVLYLRLVNCNEQLLVVDSSLKETRNIYKIDFSTMNYVKLETLGDISLFHAANRNYYALSNPNRWGYESNSVYVISRLYTQCNANSGDDKNYKNVSCFQLLLMEQILTCWIGVLDIYNMR*