AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129510 MtrunA17_Chr3g0093911 61.783 314 78 5 171 444 3 314 2.55e-118 350
Msa0129510 MtrunA17_Chr1g0207351 61.709 316 74 6 174 444 17 330 9.20e-118 350
Msa0129510 MtrunA17_Chr7g0252101 60.000 320 83 8 166 444 81 396 1.65e-110 333
Msa0129510 MtrunA17_Chr4g0075971 57.460 315 96 5 166 443 251 564 5.33e-103 320
Msa0129510 MtrunA17_Chr3g0077801 52.751 309 109 3 172 443 4 312 3.62e-101 306
Msa0129510 MtrunA17_Chr3g0077901 50.637 314 118 3 166 442 18 331 3.23e-100 305
Msa0129510 MtrunA17_Chr3g0077851 50.508 295 109 3 185 442 1 295 1.25e-91 281
Msa0129510 MtrunA17_Chr3g0112311 50.321 312 113 4 171 443 3 311 7.69e-88 273
Msa0129510 MtrunA17_Chr7g0243331 48.693 306 121 5 173 443 5 309 8.97e-86 267
Msa0129510 MtrunA17_Chr6g0488101 47.059 323 127 5 162 444 92 410 2.65e-84 267
Msa0129510 MtrunA17_Chr6g0488271 46.749 323 128 5 162 444 52 370 1.36e-83 263
Msa0129510 MtrunA17_Chr1g0196231 50.000 306 91 7 5 277 90 366 7.32e-79 250
Msa0129510 MtrunA17_Chr1g0209051 67.196 189 56 2 262 444 47 235 8.40e-78 244
Msa0129510 MtrunA17_Chr6g0456921 76.687 163 38 0 1 163 97 259 3.77e-76 241
Msa0129510 MtrunA17_Chr6g0456921 82.645 121 21 0 26 146 186 306 3.42e-60 200
Msa0129510 MtrunA17_Chr6g0456921 64.865 74 26 0 10 83 234 307 1.25e-21 95.5
Msa0129510 MtrunA17_Chr3g0122991 43.377 302 112 9 170 443 1 271 4.20e-64 208
Msa0129510 MtrunA17_Chr6g0452641 48.235 255 93 3 211 429 28 279 4.61e-57 192
Msa0129510 MtrunA17_Chr3g0123471 52.486 181 79 2 267 443 51 228 2.70e-49 169
Msa0129510 MtrunA17_Chr1g0202841 62.411 141 47 2 310 444 1 141 2.55e-48 164
Msa0129510 MtrunA17_Chr1g0187941 57.143 133 51 2 314 440 5 137 1.12e-40 142
Msa0129510 MtrunA17_Chr7g0243391 42.308 208 88 4 166 341 15 222 1.03e-38 140
Msa0129510 MtrunA17_Chr1g0206951 68.817 93 26 1 172 261 2 94 1.31e-35 128
Msa0129510 MtrunA17_Chr1g0196411 82.609 69 12 0 1 69 1 69 5.44e-33 119
Msa0129510 MtrunA17_Chr1g0196411 72.727 44 12 0 90 133 26 69 7.85e-14 66.6
Msa0129510 MtrunA17_Chr1g0196241 76.119 67 15 1 379 444 2 68 2.05e-28 107
Msa0129510 MtrunA17_Chr6g0486591 49.558 113 51 1 337 443 1 113 4.10e-27 106
Msa0129510 MtrunA17_Chr4g0075861 63.636 99 32 2 166 261 251 348 6.07e-25 105
Msa0129510 MtrunA17_Chr6g0459061 27.517 298 171 10 186 444 27 318 1.57e-20 92.8
Msa0129510 MtrunA17_Chr1g0209191 64.407 59 21 0 389 447 1 59 8.98e-19 81.3
Msa0129510 MtrunA17_Chr1g0209061 76.744 43 10 0 166 208 65 107 1.46e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 100 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTCCAATCTTACAATTT+TGG 0.047024 1_3:-59492676 None:intergenic
CTTTCATATCCCCACCTATT+TGG 0.180989 1_3:-59496187 None:intergenic
CTCTGATGAATTTGTCTTGT+TGG 0.230871 1_3:+59495775 Msa0129510:CDS
AAGGAAGATAATCCGAAAAT+TGG 0.254203 1_3:+59492704 Msa0129510:CDS
TATCATACCTTACTTGCTTT+TGG 0.264001 1_3:+59495746 Msa0129510:CDS
CATTTCCAAAACACTAGATT+TGG 0.280825 1_3:+59495405 Msa0129510:CDS
TCTTCAAGCAATAAATCTTT+TGG 0.286453 1_3:-59495567 None:intergenic
TCGGGAGTTGAATGCGATTC+AGG 0.293806 1_3:+59493039 Msa0129510:CDS
TTTCATATCCCCACCTATTT+GGG 0.303210 1_3:-59496186 None:intergenic
ATGCTTCCAGCTCCTCCTTA+TGG 0.310848 1_3:+59496291 Msa0129510:CDS
ACACAATGTAATGCGAATTC+AGG 0.312578 1_3:+59496241 Msa0129510:CDS
CCGAAAATTAGATGCAATAT+TGG 0.314170 1_3:+59492908 Msa0129510:CDS
TTCCAGTTTGACATAATTCA+TGG 0.319194 1_3:-59496104 None:intergenic
ATGCATTGAGCAACCCAAAT+AGG 0.358244 1_3:+59496173 Msa0129510:CDS
AGGGAGGGTTGTTGACTTCA+TGG 0.367370 1_3:+59495880 Msa0129510:CDS
AAAGTTGGAAAGACATCAAT+TGG 0.370420 1_3:+59492984 Msa0129510:CDS
ATCGTCCAAATCTAGTGTTT+TGG 0.375684 1_3:-59495410 None:intergenic
AACCATGAATTATGTCAAAC+TGG 0.381676 1_3:+59496102 Msa0129510:CDS
TTTCCGGTGTGTGCAAGAAT+TGG 0.387457 1_3:+59495443 Msa0129510:CDS
TTATGTCAAACTGGAAACTT+TGG 0.388347 1_3:+59496111 Msa0129510:CDS
CAGAGAACTGTGAACTTCCT+TGG 0.395610 1_3:+59495368 Msa0129510:CDS
AAAGTTGGGATGACATCAAT+TGG 0.397689 1_3:+59492792 Msa0129510:CDS
TCAAGTTTCGTATAATCATA+AGG 0.404931 1_3:+59495516 Msa0129510:CDS
GTTGTGATCTAAAGGGAAAA+AGG 0.420866 1_3:+59495333 Msa0129510:intron
GTGGATGCGGCGGATGTGTT+TGG 0.422206 1_3:-59491085 None:intergenic
GCGCTCAAGTCCCTCTTAGA+TGG 0.422869 1_3:+59492959 Msa0129510:CDS
CATTACAGTTGACCAATCTA+AGG 0.423701 1_3:-59496015 None:intergenic
TTGGGTTACTTATTCGATAG+TGG 0.424110 1_3:+59495850 Msa0129510:CDS
GATTTATTGCTTGAAGATGA+TGG 0.424958 1_3:+59495573 Msa0129510:CDS
CAATGTCCTATACCTTAGAT+TGG 0.425691 1_3:+59496003 Msa0129510:CDS
ACATCAATTGGAAAGACATC+AGG 0.427079 1_3:+59492804 Msa0129510:CDS
ACATCAATTGGAAAGACATA+AGG 0.428491 1_3:+59492996 Msa0129510:CDS
GGATTGCAAGACGAAGAAAA+TGG 0.430189 1_3:-59491064 None:intergenic
TTGGTTGGGGAAGCTAATAA+AGG 0.431759 1_3:-59495548 None:intergenic
CCGAAAATTGGATACAATAG+TGG 0.432070 1_3:+59492716 Msa0129510:CDS
TAGATTTGGACGATCTCTTT+CGG 0.435718 1_3:+59495419 Msa0129510:CDS
CACAATGTAATGCGAATTCA+GGG 0.436587 1_3:+59496242 Msa0129510:CDS
ATCAATCTCAAAATTGTGGT+TGG 0.437334 1_3:+59495831 Msa0129510:CDS
GTGACCCAAAATTGTAAGAT+TGG 0.439121 1_3:+59492671 Msa0129510:CDS
AGTGGTTGATTCATCGTTGA+AGG 0.440903 1_3:+59496048 Msa0129510:CDS
AGTTGACCAATCTAAGGTAT+AGG 0.449633 1_3:-59496009 None:intergenic
CCGGTGTGTGCAAGAATTGG+AGG 0.453992 1_3:+59495446 Msa0129510:CDS
CCCTCTTAGATGGCAAAAGT+TGG 0.455555 1_3:+59492969 Msa0129510:CDS
TATGTCAAACTGGAAACTTT+GGG 0.457586 1_3:+59496112 Msa0129510:CDS
TCAATCTCAAAATTGTGGTT+GGG 0.466996 1_3:+59495832 Msa0129510:CDS
AGAGAACTGTGAACTTCCTT+GGG 0.473513 1_3:+59495369 Msa0129510:CDS
ATAATCAATCTACAGGATAA+TGG 0.480057 1_3:+59492619 Msa0129510:intron
CAGATTCTCACATGTTGGAT+TGG 0.480976 1_3:+59496316 Msa0129510:CDS
AATCTAAGGTATAGGACATT+GGG 0.481004 1_3:-59496001 None:intergenic
CTGAAACTTGTTGAGAGAAG+TGG 0.482100 1_3:-59491104 None:intergenic
GCATTTGCCAAAAGCAAGTA+AGG 0.483061 1_3:-59495753 None:intergenic
TGGAACAGATTCTCACATGT+TGG 0.490431 1_3:+59496311 Msa0129510:CDS
TCTGTTCCATAAGGAGGAGC+TGG 0.496455 1_3:-59496297 None:intergenic
ATCTATGTTACGTCTTCTAC+CGG 0.506380 1_3:+59495613 Msa0129510:CDS
TGGGTTACTTATTCGATAGT+GGG 0.506800 1_3:+59495851 Msa0129510:CDS
TATTCGATAGTGGGAAAACC+AGG 0.509346 1_3:+59495860 Msa0129510:CDS
GCTACCTTCTTGCTTCTCCA+AGG 0.510360 1_3:+59491176 Msa0129510:five_prime_UTR
CATCAATTGGAAAGACATAA+GGG 0.511174 1_3:+59492997 Msa0129510:CDS
GAGTCAGATGGCAAAAGAAA+AGG 0.513017 1_3:+59493112 Msa0129510:CDS
TGGGTCACCGCATTGTTGGT+TGG 0.514434 1_3:-59492656 None:intergenic
CAATCTAAGGTATAGGACAT+TGG 0.519643 1_3:-59496002 None:intergenic
CGGTGTGTGCAAGAATTGGA+GGG 0.522468 1_3:+59495447 Msa0129510:CDS
ATGCGATTCAGGACAAGGCC+AGG 0.522988 1_3:+59493050 Msa0129510:CDS
ATGTGAGAATCTGTTCCATA+AGG 0.530374 1_3:-59496306 None:intergenic
TCACTGACAAGGCCAACATA+GGG 0.530818 1_3:+59495927 Msa0129510:CDS
AAGCAATTCGCGACAAGGCA+AGG 0.533195 1_3:+59492858 Msa0129510:CDS
GTCTATCAATCTCAAAATTG+TGG 0.542027 1_3:+59495827 Msa0129510:CDS
GTTGAATGCGATTCAGGACA+AGG 0.552499 1_3:+59493045 Msa0129510:CDS
GTCACTGACAAGGCCAACAT+AGG 0.554026 1_3:+59495926 Msa0129510:CDS
ATGAAGTCAACAACCCTCCC+TGG 0.555611 1_3:-59495878 None:intergenic
CAAGCTAAGTACCCCTATGT+TGG 0.578655 1_3:-59495939 None:intergenic
TTTGAAAGCAATTCGCGACA+AGG 0.582310 1_3:+59492853 Msa0129510:CDS
TACGAAACTTGAAGAAGTAA+CGG 0.583044 1_3:-59495505 None:intergenic
AAAGAGTTCATCGAGTCAGA+TGG 0.590519 1_3:+59493100 Msa0129510:CDS
CGAACCTTGGAGAAGCAAGA+AGG 0.593852 1_3:-59491180 None:intergenic
ACGTAACATAGATAGAGTGA+AGG 0.598147 1_3:-59495603 None:intergenic
CATTGAGCAACCCAAATAGG+TGG 0.598653 1_3:+59496176 Msa0129510:CDS
CTTGTTGAGAGAAGTGGATG+CGG 0.602316 1_3:-59491098 None:intergenic
ATTCATCGTTGAAGGAAACA+AGG 0.604415 1_3:+59496056 Msa0129510:CDS
ATGATATCAAGCACATCCCA+AGG 0.608076 1_3:-59495385 None:intergenic
ATTGAGCAACCCAAATAGGT+GGG 0.612873 1_3:+59496177 Msa0129510:CDS
GATACAATAGTGGTAAGCGT+TGG 0.621054 1_3:+59492726 Msa0129510:CDS
TATTGGTAAGCCATGGTCAG+AGG 0.622917 1_3:+59492925 Msa0129510:CDS
TGAGAATCTGTTCCATAAGG+AGG 0.623582 1_3:-59496303 None:intergenic
GATGCAATATTGGTAAGCCA+TGG 0.625611 1_3:+59492918 Msa0129510:CDS
CATCAATTGGAAAGACATCA+GGG 0.635002 1_3:+59492805 Msa0129510:CDS
GATAGTGGGAAAACCAGGGA+GGG 0.643788 1_3:+59495865 Msa0129510:CDS
CCTCCAATTCTTGCACACAC+CGG 0.647374 1_3:-59495446 None:intergenic
TAAGATTGGAGAGCTTCCCA+AGG 0.652916 1_3:+59492685 Msa0129510:CDS
CACTGACAAGGCCAACATAG+GGG 0.657764 1_3:+59495928 Msa0129510:CDS
AATATATGTTGTCACTGACA+AGG 0.670333 1_3:+59495916 Msa0129510:CDS
GAAGGTAGCGAAGTGAAGTG+AGG 0.671029 1_3:-59491162 None:intergenic
ATCAATCTACAGGATAATGG+CGG 0.678202 1_3:+59492622 Msa0129510:intron
GCCGCCGCTAGGTTCGACAA+TGG 0.690084 1_3:+59491034 None:intergenic
TTGAGCAACCCAAATAGGTG+GGG 0.691982 1_3:+59496178 Msa0129510:CDS
ATTCGATAGTGGGAAAACCA+GGG 0.695416 1_3:+59495861 Msa0129510:CDS
CGATAGTGGGAAAACCAGGG+AGG 0.702324 1_3:+59495864 Msa0129510:CDS
GTTGAGAGAAGTGGATGCGG+CGG 0.719691 1_3:-59491095 None:intergenic
ACAATGTAATGCGAATTCAG+GGG 0.734319 1_3:+59496243 Msa0129510:CDS
TAGTGATCCAACCAACAATG+CGG 0.734428 1_3:+59492649 Msa0129510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATATAGTAATCAT+AGG + chr1_3:59491777-59491796 Msa0129510:intron 10.0%
!!! ATTTATTATGTTTTTTGTTT+TGG + chr1_3:59492229-59492248 Msa0129510:intron 10.0%
!! AAACTAAAATTGTTAATTAA+AGG - chr1_3:59494075-59494094 None:intergenic 10.0%
!! AAGATTATAATATATAAGAT+AGG + chr1_3:59494575-59494594 Msa0129510:intron 10.0%
!!! GTTTGTTAAAAAAAAAAAAA+AGG + chr1_3:59494877-59494896 Msa0129510:intron 10.0%
!!! TGTTACAAGTTTTATATTTT+TGG + chr1_3:59493570-59493589 Msa0129510:intron 15.0%
!! GAATCTTTAATTAACAATTA+AGG + chr1_3:59493830-59493849 Msa0129510:intron 15.0%
!! AGAATCTCTTATATATTTAT+GGG + chr1_3:59493904-59493923 Msa0129510:intron 15.0%
!!! AACCTTTAAAAAAAAACTTA+CGG + chr1_3:59493961-59493980 Msa0129510:intron 15.0%
!! AAATTGTTATCAAACAATAA+AGG + chr1_3:59494002-59494021 Msa0129510:intron 15.0%
!!! AAAAATTATATGCATTGATA+TGG - chr1_3:59494420-59494439 None:intergenic 15.0%
!! TATAATATATAAGATAGGAT+AGG + chr1_3:59494580-59494599 Msa0129510:intron 15.0%
!!! TTGTTTATTTGATAATATCA+TGG - chr1_3:59495222-59495241 None:intergenic 15.0%
!! TACATTTCTGATATGAATTT+AGG + chr1_3:59491232-59491251 Msa0129510:intron 20.0%
!! AGGTTTATCAAATTTGATAT+AGG + chr1_3:59491252-59491271 Msa0129510:intron 20.0%
!!! AAATTTGATATAGGTGTTTT+AGG + chr1_3:59491261-59491280 Msa0129510:intron 20.0%
!!! AATTTGATATAGGTGTTTTA+GGG + chr1_3:59491262-59491281 Msa0129510:intron 20.0%
!! AATAATGGTAGATAGATTAT+TGG - chr1_3:59491303-59491322 None:intergenic 20.0%
!!! CTCTTTCTAATACTTTTTTT+TGG + chr1_3:59492302-59492321 Msa0129510:intron 20.0%
!! TTATTGGATGAAAATAATGT+GGG + chr1_3:59492353-59492372 Msa0129510:intron 20.0%
!!! AAGTTTTATATTTATCACTG+TGG + chr1_3:59493305-59493324 Msa0129510:intron 20.0%
!!! ATACAAGTTTTACATTTTTC+AGG + chr1_3:59493439-59493458 Msa0129510:intron 20.0%
!! GAGAATCTCTTATATATTTA+TGG + chr1_3:59493903-59493922 Msa0129510:intron 20.0%
!!! AACCGTAAGTTTTTTTTTAA+AGG - chr1_3:59493966-59493985 None:intergenic 20.0%
!!! ATTGTTTGATAACAATTTGA+AGG - chr1_3:59494000-59494019 None:intergenic 20.0%
!! CTAAAATTGTTAATTAAAGG+TGG - chr1_3:59494072-59494091 None:intergenic 20.0%
!! AATGCGTATAAATTATAAAG+TGG + chr1_3:59494451-59494470 Msa0129510:intron 20.0%
!!! AAATGGTTATAAGTTTTAGA+TGG + chr1_3:59494773-59494792 Msa0129510:intron 20.0%
!! AAAAAAAAAAAAAGGCTTAG+AGG + chr1_3:59494885-59494904 Msa0129510:intron 20.0%
!!! TTTTTTCAGTAGTGAAAATT+AGG + chr1_3:59495070-59495089 Msa0129510:intron 20.0%
!!! TTTTTCAGTAGTGAAAATTA+GGG + chr1_3:59495071-59495090 Msa0129510:intron 20.0%
!! TATAATATACCAATTGAAGA+TGG + chr1_3:59495157-59495176 Msa0129510:intron 20.0%
!! ATAATATACCAATTGAAGAT+GGG + chr1_3:59495158-59495177 Msa0129510:intron 20.0%
!!! TTGATAATATCATGGAATAT+GGG - chr1_3:59495214-59495233 None:intergenic 20.0%
!!! TTTGATAATATCATGGAATA+TGG - chr1_3:59495215-59495234 None:intergenic 20.0%
!!! TTTTTATTGGAGAAATTTAC+TGG + chr1_3:59495471-59495490 Msa0129510:CDS 20.0%
! CCTAATCTATAGTAGATTAT+TGG - chr1_3:59491451-59491470 None:intergenic 25.0%
! CCAATAATCTACTATAGATT+AGG + chr1_3:59491448-59491467 Msa0129510:intron 25.0%
!!! GCAAAAAAAGTCTTAGTTTT+TGG - chr1_3:59491540-59491559 None:intergenic 25.0%
! TTGAAAAAATAGAGGAAAGT+GGG + chr1_3:59491611-59491630 Msa0129510:intron 25.0%
!!! ATTTTTGATTTCCTCAAATG+AGG - chr1_3:59491684-59491703 None:intergenic 25.0%
!! ATTGTATTGAAGAAGAGTTT+TGG + chr1_3:59491702-59491721 Msa0129510:intron 25.0%
!! TTGTATTGAAGAAGAGTTTT+GGG + chr1_3:59491703-59491722 Msa0129510:intron 25.0%
!!! TCAATTGCTAGGTTTTTTTT+AGG + chr1_3:59491940-59491959 Msa0129510:intron 25.0%
! ATAAGATATTGTTCCTATTG+TGG - chr1_3:59492043-59492062 None:intergenic 25.0%
! AGAACAATCTACAATTCAAA+AGG + chr1_3:59492072-59492091 Msa0129510:intron 25.0%
! CTTATTGGATGAAAATAATG+TGG + chr1_3:59492352-59492371 Msa0129510:intron 25.0%
! TTTGAAAATGAGTCCATAAA+TGG - chr1_3:59492384-59492403 None:intergenic 25.0%
! TTAATGTGTCAAATCAAAGT+GGG - chr1_3:59492415-59492434 None:intergenic 25.0%
! TTTAATGTGTCAAATCAAAG+TGG - chr1_3:59492416-59492435 None:intergenic 25.0%
! ATAATCAATCTACAGGATAA+TGG + chr1_3:59492619-59492638 Msa0129510:intron 25.0%
! ATGAAGAAAAATTGTTTGGT+CGG + chr1_3:59492828-59492847 Msa0129510:CDS 25.0%
!! CCAATATTGCATCTAATTTT+CGG - chr1_3:59492911-59492930 None:intergenic 25.0%
!!! TTCCTTTTTAAAAAACTTCC+TGG - chr1_3:59493071-59493090 None:intergenic 25.0%
! ACCTTTCATTATCTAAAAGT+AGG + chr1_3:59493166-59493185 Msa0129510:intron 25.0%
! TAGTATCATGTATCAAACAA+TGG - chr1_3:59493268-59493287 None:intergenic 25.0%
!! TACATGATACTAGTGAATTT+TGG + chr1_3:59493276-59493295 Msa0129510:intron 25.0%
!!! ATGTTTGTTGAATTTTGAGT+AGG + chr1_3:59493331-59493350 Msa0129510:intron 25.0%
!!! TTACATTTTTCAGGATATGT+CGG + chr1_3:59493448-59493467 Msa0129510:intron 25.0%
!! TACATGATACTAGTGAATTT+TGG + chr1_3:59493276-59493295 Msa0129510:intron 25.0%
! TTAAGGTTATCAAACAATTG+AGG + chr1_3:59493847-59493866 Msa0129510:intron 25.0%
! ATCTCTTATATATTTATGGG+AGG + chr1_3:59493907-59493926 Msa0129510:intron 25.0%
! TTGTTATCAAACAATAAAGG+TGG + chr1_3:59494005-59494024 Msa0129510:intron 25.0%
! TTATCAAACAATTCATGTCA+CGG - chr1_3:59494033-59494052 None:intergenic 25.0%
! GGTAATTGATCATAACTATT+AGG - chr1_3:59494107-59494126 None:intergenic 25.0%
!! CTTCATTTTCTTTTCTGTTA+AGG - chr1_3:59494128-59494147 None:intergenic 25.0%
! TTTCAGTTCATTCATTTCAT+TGG + chr1_3:59494280-59494299 Msa0129510:intron 25.0%
! TTCAGTTCATTCATTTCATT+GGG + chr1_3:59494281-59494300 Msa0129510:intron 25.0%
! TTGTTAAACACAATTGAAAG+TGG + chr1_3:59494368-59494387 Msa0129510:intron 25.0%
! AATTGAAAGTGGAATATTCA+TGG + chr1_3:59494379-59494398 Msa0129510:intron 25.0%
! ATTGAAAGTGGAATATTCAT+GGG + chr1_3:59494380-59494399 Msa0129510:intron 25.0%
! ATGAGATAATTGCATGATTA+AGG + chr1_3:59494486-59494505 Msa0129510:intron 25.0%
! TTAGACATCATAAACATTAG+TGG + chr1_3:59494974-59494993 Msa0129510:intron 25.0%
! TAGGGTTAATTAATGCAATT+AGG + chr1_3:59495089-59495108 Msa0129510:intron 25.0%
! AGGGTTAATTAATGCAATTA+GGG + chr1_3:59495090-59495109 Msa0129510:intron 25.0%
! TGATAATATCATGGAATATG+GGG - chr1_3:59495213-59495232 None:intergenic 25.0%
! TTCTATTGTTGTGATCTAAA+GGG + chr1_3:59495326-59495345 Msa0129510:intron 25.0%
! TCAAGTTTCGTATAATCATA+AGG + chr1_3:59495516-59495535 Msa0129510:CDS 25.0%
!!! AAGCAATAAATCTTTTGGTT+GGG - chr1_3:59495565-59495584 None:intergenic 25.0%
!! TCTTCAAGCAATAAATCTTT+TGG - chr1_3:59495570-59495589 None:intergenic 25.0%
! ACCTTCTTTATTCTTGTAAA+CGG - chr1_3:59495683-59495702 None:intergenic 25.0%
!! TTTTAGACATCTACAATATG+AGG + chr1_3:59496341-59496360 Msa0129510:CDS 25.0%
AACTCACAAACAAAGCTTTA+GGG - chr1_3:59491353-59491372 None:intergenic 30.0%
AAACTCACAAACAAAGCTTT+AGG - chr1_3:59491354-59491373 None:intergenic 30.0%
!!! TAAGACTTTTTTTGCGAGTT+TGG + chr1_3:59491545-59491564 Msa0129510:intron 30.0%
! TGAGCAAGTTGAAAAAATAG+AGG + chr1_3:59491603-59491622 Msa0129510:intron 30.0%
GTTGAAAAAATAGAGGAAAG+TGG + chr1_3:59491610-59491629 Msa0129510:intron 30.0%
GAAAAAAAGAAAGAAGCAAG+TGG + chr1_3:59492004-59492023 Msa0129510:intron 30.0%
AATCACAATAGAGAAATGCT+AGG - chr1_3:59492465-59492484 None:intergenic 30.0%
GTAGATTGATTATGCACAAT+AGG - chr1_3:59492612-59492631 None:intergenic 30.0%
ATTGTGCATAATCAATCTAC+AGG + chr1_3:59492612-59492631 Msa0129510:intron 30.0%
! CTCTCCAATCTTACAATTTT+GGG - chr1_3:59492678-59492697 None:intergenic 30.0%
! ATTTTCGGATTATCTTCCTT+GGG - chr1_3:59492704-59492723 None:intergenic 30.0%
! AATTTTCGGATTATCTTCCT+TGG - chr1_3:59492705-59492724 None:intergenic 30.0%
AAGGAAGATAATCCGAAAAT+TGG + chr1_3:59492704-59492723 Msa0129510:CDS 30.0%
! CCACTATTGTATCCAATTTT+CGG - chr1_3:59492719-59492738 None:intergenic 30.0%
! CCAACTTTTTGCATTTAAGA+CGG - chr1_3:59492780-59492799 None:intergenic 30.0%
CGTCTTAAATGCAAAAAGTT+GGG + chr1_3:59492778-59492797 Msa0129510:CDS 30.0%
AGGGATGAAGAAAAATTGTT+TGG + chr1_3:59492824-59492843 Msa0129510:CDS 30.0%
TGAAGAAAAATTGTTTGGTC+GGG + chr1_3:59492829-59492848 Msa0129510:CDS 30.0%
!! GGCAAGGAAACTTTTTAAAA+AGG + chr1_3:59492874-59492893 Msa0129510:CDS 30.0%
CCGAAAATTAGATGCAATAT+TGG + chr1_3:59492908-59492927 Msa0129510:CDS 30.0%
AAAGTTGGAAAGACATCAAT+TGG + chr1_3:59492984-59493003 Msa0129510:CDS 30.0%
ACATCAATTGGAAAGACATA+AGG + chr1_3:59492996-59493015 Msa0129510:CDS 30.0%
CATCAATTGGAAAGACATAA+GGG + chr1_3:59492997-59493016 Msa0129510:CDS 30.0%
ATGAAGAAAAACTGTTTGGT+CGG + chr1_3:59493020-59493039 Msa0129510:CDS 30.0%
!! GCCTACTTTTAGATAATGAA+AGG - chr1_3:59493170-59493189 None:intergenic 30.0%
!! ATGTCGGTTGAATTTTAAGT+AGG + chr1_3:59493464-59493483 Msa0129510:intron 30.0%
CATAACAAATTGAAAACCAC+AGG - chr1_3:59493492-59493511 None:intergenic 30.0%
! TGTATATGTCTGTTGAGTTT+TGG + chr1_3:59493597-59493616 Msa0129510:intron 30.0%
AATACTCAATTGTTGAGTCA+CGG - chr1_3:59493877-59493896 None:intergenic 30.0%
TATCAAACAATTCATGTCAC+GGG - chr1_3:59494032-59494051 None:intergenic 30.0%
TCATAACTATTAGGACAAGT+AGG - chr1_3:59494098-59494117 None:intergenic 30.0%
AAGATAGAAAGATGAGAAAG+AGG + chr1_3:59494145-59494164 Msa0129510:intron 30.0%
!!! GTGAATTGTTTCTTGTTTTG+AGG + chr1_3:59494307-59494326 Msa0129510:intron 30.0%
!!! TTGTTTTGAGGCATTTATTG+AGG + chr1_3:59494319-59494338 Msa0129510:intron 30.0%
!!! TGTGCTATTTTTCTCTCTTT+GGG - chr1_3:59494683-59494702 None:intergenic 30.0%
!!! ATGTGCTATTTTTCTCTCTT+TGG - chr1_3:59494684-59494703 None:intergenic 30.0%
! TGGGGTATTTATGTGTTAAA+TGG + chr1_3:59494756-59494775 Msa0129510:intron 30.0%
! ATCAACTGTTACTTACATGT+TGG + chr1_3:59494801-59494820 Msa0129510:intron 30.0%
CTGCATATTAAGTAGCTTAA+TGG + chr1_3:59494855-59494874 Msa0129510:intron 30.0%
TATAAAGACTTCGCTTTCAT+TGG + chr1_3:59494928-59494947 Msa0129510:intron 30.0%
GCTTTCATTGGATATTTACA+TGG + chr1_3:59494940-59494959 Msa0129510:intron 30.0%
GTTCTATTGTTGTGATCTAA+AGG + chr1_3:59495325-59495344 Msa0129510:intron 30.0%
CATTTCCAAAACACTAGATT+TGG + chr1_3:59495405-59495424 Msa0129510:CDS 30.0%
TACGAAACTTGAAGAAGTAA+CGG - chr1_3:59495508-59495527 None:intergenic 30.0%
!! AGCAATAAATCTTTTGGTTG+GGG - chr1_3:59495564-59495583 None:intergenic 30.0%
! CAAGCAATAAATCTTTTGGT+TGG - chr1_3:59495566-59495585 None:intergenic 30.0%
GATTTATTGCTTGAAGATGA+TGG + chr1_3:59495573-59495592 Msa0129510:CDS 30.0%
!! TTCTACCGGTTATTTTATCA+TGG + chr1_3:59495627-59495646 Msa0129510:intron 30.0%
TCCGTTTACAAGAATAAAGA+AGG + chr1_3:59495679-59495698 Msa0129510:intron 30.0%
! TATCATACCTTACTTGCTTT+TGG + chr1_3:59495746-59495765 Msa0129510:CDS 30.0%
!!! TGGTTTTATGCAAAAGTTCT+AGG + chr1_3:59495795-59495814 Msa0129510:CDS 30.0%
GTCTATCAATCTCAAAATTG+TGG + chr1_3:59495827-59495846 Msa0129510:CDS 30.0%
ATCAATCTCAAAATTGTGGT+TGG + chr1_3:59495831-59495850 Msa0129510:CDS 30.0%
TCAATCTCAAAATTGTGGTT+GGG + chr1_3:59495832-59495851 Msa0129510:CDS 30.0%
AATATATGTTGTCACTGACA+AGG + chr1_3:59495916-59495935 Msa0129510:CDS 30.0%
! AATCTAAGGTATAGGACATT+GGG - chr1_3:59496004-59496023 None:intergenic 30.0%
AACCATGAATTATGTCAAAC+TGG + chr1_3:59496102-59496121 Msa0129510:CDS 30.0%
TTCCAGTTTGACATAATTCA+TGG - chr1_3:59496107-59496126 None:intergenic 30.0%
TTATGTCAAACTGGAAACTT+TGG + chr1_3:59496111-59496130 Msa0129510:CDS 30.0%
TATGTCAAACTGGAAACTTT+GGG + chr1_3:59496112-59496131 Msa0129510:CDS 30.0%
!!! ACTTTTTTTGCGAGTTTGGA+GGG + chr1_3:59491549-59491568 Msa0129510:intron 35.0%
AAGGAAAGGCTTGGAAAAAA+AGG + chr1_3:59491578-59491597 Msa0129510:intron 35.0%
AAAAATAGAGGAAAGTGGGA+TGG + chr1_3:59491615-59491634 Msa0129510:intron 35.0%
AAAATAGAGGAAAGTGGGAT+GGG + chr1_3:59491616-59491635 Msa0129510:intron 35.0%
ACAAAACTCTTCCTCATTTG+AGG + chr1_3:59491670-59491689 Msa0129510:intron 35.0%
!!! TATTGAAGAAGAGTTTTGGG+AGG + chr1_3:59491706-59491725 Msa0129510:intron 35.0%
GTGGAAAACATGAAGGAAAA+TGG - chr1_3:59491859-59491878 None:intergenic 35.0%
AGAAACAATTCCACCACAAT+AGG + chr1_3:59492027-59492046 Msa0129510:intron 35.0%
AGATATTGTTCCTATTGTGG+TGG - chr1_3:59492040-59492059 None:intergenic 35.0%
TCTAGTACTCACTCTCTTAT+TGG + chr1_3:59492337-59492356 Msa0129510:intron 35.0%
AATGTGGGTTTGACCATTTA+TGG + chr1_3:59492368-59492387 Msa0129510:intron 35.0%
! ATCAATCTACAGGATAATGG+CGG + chr1_3:59492622-59492641 Msa0129510:intron 35.0%
GTGACCCAAAATTGTAAGAT+TGG + chr1_3:59492671-59492690 Msa0129510:CDS 35.0%
! GCTCTCCAATCTTACAATTT+TGG - chr1_3:59492679-59492698 None:intergenic 35.0%
CCGAAAATTGGATACAATAG+TGG + chr1_3:59492716-59492735 Msa0129510:CDS 35.0%
CCGTCTTAAATGCAAAAAGT+TGG + chr1_3:59492777-59492796 Msa0129510:CDS 35.0%
AAAGTTGGGATGACATCAAT+TGG + chr1_3:59492792-59492811 Msa0129510:CDS 35.0%
ACATCAATTGGAAAGACATC+AGG + chr1_3:59492804-59492823 Msa0129510:CDS 35.0%
CATCAATTGGAAAGACATCA+GGG + chr1_3:59492805-59492824 Msa0129510:CDS 35.0%
AGGGATGAAGAAAAACTGTT+TGG + chr1_3:59493016-59493035 Msa0129510:CDS 35.0%
TGAAGAAAAACTGTTTGGTC+GGG + chr1_3:59493021-59493040 Msa0129510:CDS 35.0%
!!! GGCCAGGAAGTTTTTTAAAA+AGG + chr1_3:59493066-59493085 Msa0129510:CDS 35.0%
AGATGGCAAAAGAAAAGGTA+AGG + chr1_3:59493117-59493136 Msa0129510:intron 35.0%
! CATAACAAACTGAGAAGCAT+AGG - chr1_3:59493359-59493378 None:intergenic 35.0%
! TTTTACCTCTAGTTGTGCAA+GGG + chr1_3:59493379-59493398 Msa0129510:intron 35.0%
TATTGTGTGACACATGATAC+TGG + chr1_3:59493404-59493423 Msa0129510:intron 35.0%
! CACATGATACTGGTGAATTT+TGG + chr1_3:59493414-59493433 Msa0129510:intron 35.0%
!! GAATTTTAAGTAGGATCCTG+TGG + chr1_3:59493473-59493492 Msa0129510:intron 35.0%
CTGCAAAAGTTTATGTTGAC+CGG + chr1_3:59493625-59493644 Msa0129510:intron 35.0%
ATATACTTGTCAGTAACGAC+CGG - chr1_3:59493647-59493666 None:intergenic 35.0%
AGGTTATCAAACAATTGAGG+TGG + chr1_3:59493850-59493869 Msa0129510:intron 35.0%
ATAGAAAGATGAGAAAGAGG+TGG + chr1_3:59494148-59494167 Msa0129510:intron 35.0%
AGAAAGAGGTGGAAGAAAAA+TGG + chr1_3:59494159-59494178 Msa0129510:intron 35.0%
AGACCGATTGAAACATTAGT+GGG + chr1_3:59494237-59494256 Msa0129510:intron 35.0%
AGGACACAGTACAATGAAAA+TGG + chr1_3:59494339-59494358 Msa0129510:intron 35.0%
GGACACAGTACAATGAAAAT+GGG + chr1_3:59494340-59494359 Msa0129510:intron 35.0%
ATTCATGGGAAAACAAAGTC+TGG + chr1_3:59494394-59494413 Msa0129510:intron 35.0%
TGATTAAGGACCCACTAATT+TGG + chr1_3:59494500-59494519 Msa0129510:intron 35.0%
! ACCCACTAATTTGGTTTATG+AGG + chr1_3:59494509-59494528 Msa0129510:intron 35.0%
CCCTCATAAACCAAATTAGT+GGG - chr1_3:59494513-59494532 None:intergenic 35.0%
! CCCACTAATTTGGTTTATGA+GGG + chr1_3:59494510-59494529 Msa0129510:intron 35.0%
TCCCTCATAAACCAAATTAG+TGG - chr1_3:59494514-59494533 None:intergenic 35.0%
GGCATGAATAAACTGCATAT+TGG + chr1_3:59494822-59494841 Msa0129510:intron 35.0%
TTAGGGTTGCAAGACTTAAT+AGG + chr1_3:59495107-59495126 Msa0129510:intron 35.0%
ACCAATTGAAGATGGGAAAA+TGG + chr1_3:59495165-59495184 Msa0129510:intron 35.0%
! TCCATTTTCCCATCTTCAAT+TGG - chr1_3:59495169-59495188 None:intergenic 35.0%
CACAACAATAGAACAGTGTT+AGG - chr1_3:59495319-59495338 None:intergenic 35.0%
GTTGTGATCTAAAGGGAAAA+AGG + chr1_3:59495333-59495352 Msa0129510:intron 35.0%
! ATCGTCCAAATCTAGTGTTT+TGG - chr1_3:59495413-59495432 None:intergenic 35.0%
TAGATTTGGACGATCTCTTT+CGG + chr1_3:59495419-59495438 Msa0129510:CDS 35.0%
! AGAATTGGAGGGCTTTTTAT+TGG + chr1_3:59495458-59495477 Msa0129510:CDS 35.0%
ACGTAACATAGATAGAGTGA+AGG - chr1_3:59495606-59495625 None:intergenic 35.0%
ATCTATGTTACGTCTTCTAC+CGG + chr1_3:59495613-59495632 Msa0129510:CDS 35.0%
!! TACCGGTTATTTTATCATGG+CGG + chr1_3:59495630-59495649 Msa0129510:intron 35.0%
CTCTGATGAATTTGTCTTGT+TGG + chr1_3:59495775-59495794 Msa0129510:CDS 35.0%
TTGGGTTACTTATTCGATAG+TGG + chr1_3:59495850-59495869 Msa0129510:CDS 35.0%
TGGGTTACTTATTCGATAGT+GGG + chr1_3:59495851-59495870 Msa0129510:CDS 35.0%
! CAATCTAAGGTATAGGACAT+TGG - chr1_3:59496005-59496024 None:intergenic 35.0%
CAATGTCCTATACCTTAGAT+TGG + chr1_3:59496003-59496022 Msa0129510:CDS 35.0%
! AGTTGACCAATCTAAGGTAT+AGG - chr1_3:59496012-59496031 None:intergenic 35.0%
CATTACAGTTGACCAATCTA+AGG - chr1_3:59496018-59496037 None:intergenic 35.0%
! CTGTAATGAGCAACTTTTAG+TGG + chr1_3:59496030-59496049 Msa0129510:CDS 35.0%
ATTCATCGTTGAAGGAAACA+AGG + chr1_3:59496056-59496075 Msa0129510:CDS 35.0%
TTTCATATCCCCACCTATTT+GGG - chr1_3:59496189-59496208 None:intergenic 35.0%
ACACAATGTAATGCGAATTC+AGG + chr1_3:59496241-59496260 Msa0129510:CDS 35.0%
CACAATGTAATGCGAATTCA+GGG + chr1_3:59496242-59496261 Msa0129510:CDS 35.0%
ACAATGTAATGCGAATTCAG+GGG + chr1_3:59496243-59496262 Msa0129510:CDS 35.0%
ATGTGAGAATCTGTTCCATA+AGG - chr1_3:59496309-59496328 None:intergenic 35.0%
GGATTGCAAGACGAAGAAAA+TGG - chr1_3:59491067-59491086 None:intergenic 40.0%
!! CTGAAACTTGTTGAGAGAAG+TGG - chr1_3:59491107-59491126 None:intergenic 40.0%
TACAACATACGAACGAACCT+TGG - chr1_3:59491196-59491215 None:intergenic 40.0%
! GCGGGTTTAGGGTTTAATAA+TGG - chr1_3:59491318-59491337 None:intergenic 40.0%
!!! TCTTAGTTTTTGGTTGCGAG+AGG - chr1_3:59491530-59491549 None:intergenic 40.0%
!!! GACTTTTTTTGCGAGTTTGG+AGG + chr1_3:59491548-59491567 Msa0129510:intron 40.0%
!!! CTTTTTTTGCGAGTTTGGAG+GGG + chr1_3:59491550-59491569 Msa0129510:intron 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG + chr1_3:59491958-59491977 Msa0129510:intron 40.0%
TCTACTAGCAGACAACAAAC+GGG - chr1_3:59492174-59492193 None:intergenic 40.0%
GTCTACTAGCAGACAACAAA+CGG - chr1_3:59492175-59492194 None:intergenic 40.0%
TAGTGATCCAACCAACAATG+CGG + chr1_3:59492649-59492668 Msa0129510:CDS 40.0%
GATACAATAGTGGTAAGCGT+TGG + chr1_3:59492726-59492745 Msa0129510:CDS 40.0%
TTTGAAAGCAATTCGCGACA+AGG + chr1_3:59492853-59492872 Msa0129510:CDS 40.0%
GATGCAATATTGGTAAGCCA+TGG + chr1_3:59492918-59492937 Msa0129510:CDS 40.0%
! TTGTTTTCATCCTCTGACCA+TGG - chr1_3:59492938-59492957 None:intergenic 40.0%
! CCAACTTTTGCCATCTAAGA+GGG - chr1_3:59492972-59492991 None:intergenic 40.0%
! TCCAACTTTTGCCATCTAAG+AGG - chr1_3:59492973-59492992 None:intergenic 40.0%
AAAGAGTTCATCGAGTCAGA+TGG + chr1_3:59493100-59493119 Msa0129510:CDS 40.0%
GAGTCAGATGGCAAAAGAAA+AGG + chr1_3:59493112-59493131 Msa0129510:CDS 40.0%
! GTTTTACCTCTAGTTGTGCA+AGG + chr1_3:59493378-59493397 Msa0129510:intron 40.0%
GAGACCGATTGAAACATTAG+TGG + chr1_3:59494236-59494255 Msa0129510:intron 40.0%
GAATCACAAAGTAGTGCCTA+AGG + chr1_3:59494730-59494749 Msa0129510:intron 40.0%
AAAGTAGTGCCTAAGGTGAT+GGG + chr1_3:59494737-59494756 Msa0129510:intron 40.0%
CATAAATACCCCATCACCTT+AGG - chr1_3:59494749-59494768 None:intergenic 40.0%
AAAGGCTTAGAGGTAGAAAG+TGG + chr1_3:59494895-59494914 Msa0129510:intron 40.0%
AAGGCTTAGAGGTAGAAAGT+GGG + chr1_3:59494896-59494915 Msa0129510:intron 40.0%
! TACCTGGTTCGATTCTCTTT+GGG + chr1_3:59495031-59495050 Msa0129510:intron 40.0%
TAAAGGGAAAAAGGCGATGA+AGG + chr1_3:59495342-59495361 Msa0129510:intron 40.0%
AGAGAACTGTGAACTTCCTT+GGG + chr1_3:59495369-59495388 Msa0129510:CDS 40.0%
ATGATATCAAGCACATCCCA+AGG - chr1_3:59495388-59495407 None:intergenic 40.0%
TTGGTTGGGGAAGCTAATAA+AGG - chr1_3:59495551-59495570 None:intergenic 40.0%
!! ACCGGTTATTTTATCATGGC+GGG + chr1_3:59495631-59495650 Msa0129510:intron 40.0%
GCATTTGCCAAAAGCAAGTA+AGG - chr1_3:59495756-59495775 None:intergenic 40.0%
!! TATTCGATAGTGGGAAAACC+AGG + chr1_3:59495860-59495879 Msa0129510:CDS 40.0%
!! ATTCGATAGTGGGAAAACCA+GGG + chr1_3:59495861-59495880 Msa0129510:CDS 40.0%
! AGTGGTTGATTCATCGTTGA+AGG + chr1_3:59496048-59496067 Msa0129510:CDS 40.0%
ATGCATTGAGCAACCCAAAT+AGG + chr1_3:59496173-59496192 Msa0129510:CDS 40.0%
ATTGAGCAACCCAAATAGGT+GGG + chr1_3:59496177-59496196 Msa0129510:CDS 40.0%
CTTTCATATCCCCACCTATT+TGG - chr1_3:59496190-59496209 None:intergenic 40.0%
TGAGAATCTGTTCCATAAGG+AGG - chr1_3:59496306-59496325 None:intergenic 40.0%
TGGAACAGATTCTCACATGT+TGG + chr1_3:59496311-59496330 Msa0129510:CDS 40.0%
CAGATTCTCACATGTTGGAT+TGG + chr1_3:59496316-59496335 Msa0129510:CDS 40.0%
CTTGTTGAGAGAAGTGGATG+CGG - chr1_3:59491101-59491120 None:intergenic 45.0%
!! ACAAAGCTTTAGGGTCCGTT+TGG - chr1_3:59491344-59491363 None:intergenic 45.0%
!!! GCTTTGAGAAGTGAGGGTTT+TGG - chr1_3:59491504-59491523 None:intergenic 45.0%
!! AGGAAGGCTTTGAGAAGTGA+GGG - chr1_3:59491510-59491529 None:intergenic 45.0%
!!! AGTTTTTGGTTGCGAGAGGA+AGG - chr1_3:59491526-59491545 None:intergenic 45.0%
TTTGGGGGTGGAAAACATGA+AGG - chr1_3:59491866-59491885 None:intergenic 45.0%
TTAGGCTTTGCTTGCGAGTT+TGG - chr1_3:59491909-59491928 None:intergenic 45.0%
AAGCAAAGCCTAAGACACTG+CGG + chr1_3:59491916-59491935 Msa0129510:intron 45.0%
CAATTGATCCGCAGTGTCTT+AGG - chr1_3:59491927-59491946 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr1_3:59491962-59491981 Msa0129510:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr1_3:59491963-59491982 Msa0129510:intron 45.0%
!! ATTTTGGGTCACCGCATTGT+TGG - chr1_3:59492663-59492682 None:intergenic 45.0%
TAAGATTGGAGAGCTTCCCA+AGG + chr1_3:59492685-59492704 Msa0129510:CDS 45.0%
TATTGGTAAGCCATGGTCAG+AGG + chr1_3:59492925-59492944 Msa0129510:CDS 45.0%
CCCTCTTAGATGGCAAAAGT+TGG + chr1_3:59492969-59492988 Msa0129510:CDS 45.0%
GTTGAATGCGATTCAGGACA+AGG + chr1_3:59493045-59493064 Msa0129510:CDS 45.0%
AAAGTAGGCTCAACTACCCA+AGG + chr1_3:59493181-59493200 Msa0129510:intron 45.0%
CTCAACTACCCAAGGTAACT+AGG + chr1_3:59493189-59493208 Msa0129510:intron 45.0%
CACAGGTTCCTAGTTACCTT+GGG - chr1_3:59493200-59493219 None:intergenic 45.0%
AATCCACAGTTGAGAACCAC+AGG - chr1_3:59493217-59493236 None:intergenic 45.0%
ATAGTCCCTTGCACAACTAG+AGG - chr1_3:59493387-59493406 None:intergenic 45.0%
CCGCCCACTAATGTTTCAAT+CGG - chr1_3:59494243-59494262 None:intergenic 45.0%
CCGATTGAAACATTAGTGGG+CGG + chr1_3:59494240-59494259 Msa0129510:intron 45.0%
! TTGAAACATTAGTGGGCGGT+AGG + chr1_3:59494244-59494263 Msa0129510:intron 45.0%
! TGAAACATTAGTGGGCGGTA+GGG + chr1_3:59494245-59494264 Msa0129510:intron 45.0%
CAAAGTAGTGCCTAAGGTGA+TGG + chr1_3:59494736-59494755 Msa0129510:intron 45.0%
AAGTAGTGCCTAAGGTGATG+GGG + chr1_3:59494738-59494757 Msa0129510:intron 45.0%
TAGAGGTAGAAAGTGGGCAA+CGG + chr1_3:59494902-59494921 Msa0129510:intron 45.0%
AAATGTCACCAAGCTGTACC+TGG + chr1_3:59495015-59495034 Msa0129510:intron 45.0%
! GTACCTGGTTCGATTCTCTT+TGG + chr1_3:59495030-59495049 Msa0129510:intron 45.0%
CAGAGAACTGTGAACTTCCT+TGG + chr1_3:59495368-59495387 Msa0129510:CDS 45.0%
! GACGATCTCTTTCGGTTTTC+CGG + chr1_3:59495427-59495446 Msa0129510:CDS 45.0%
TTTCCGGTGTGTGCAAGAAT+TGG + chr1_3:59495443-59495462 Msa0129510:CDS 45.0%
CCCCGCCATGATAAAATAAC+CGG - chr1_3:59495635-59495654 None:intergenic 45.0%
!! CCGGTTATTTTATCATGGCG+GGG + chr1_3:59495632-59495651 Msa0129510:intron 45.0%
TCACTGACAAGGCCAACATA+GGG + chr1_3:59495927-59495946 Msa0129510:CDS 45.0%
CAAGCTAAGTACCCCTATGT+TGG - chr1_3:59495942-59495961 None:intergenic 45.0%
CATTGAGCAACCCAAATAGG+TGG + chr1_3:59496176-59496195 Msa0129510:CDS 45.0%
TTGAGCAACCCAAATAGGTG+GGG + chr1_3:59496178-59496197 Msa0129510:CDS 45.0%
!!! TATGTTTATTTATTTATTTT+AGG - chr1_3:59495261-59495280 None:intergenic 5.0%
GAAGGTAGCGAAGTGAAGTG+AGG - chr1_3:59491165-59491184 None:intergenic 50.0%
GCTACCTTCTTGCTTCTCCA+AGG + chr1_3:59491176-59491195 Msa0129510:five_prime_UTR 50.0%
CGAACCTTGGAGAAGCAAGA+AGG - chr1_3:59491183-59491202 None:intergenic 50.0%
! TTTAGGGTCCGTTTGGTTCG+CGG - chr1_3:59491337-59491356 None:intergenic 50.0%
!! GAGGAAGGCTTTGAGAAGTG+AGG - chr1_3:59491511-59491530 None:intergenic 50.0%
! TTTTGCGAGTTTGGAGGGGA+AGG + chr1_3:59491554-59491573 Msa0129510:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr1_3:59491555-59491574 Msa0129510:intron 50.0%
ATAGAGGAAAGTGGGATGGG+AGG + chr1_3:59491619-59491638 Msa0129510:intron 50.0%
TAGAGGAAAGTGGGATGGGA+GGG + chr1_3:59491620-59491639 Msa0129510:intron 50.0%
CTTTGCTTGCGAGTTTGGAG+GGG - chr1_3:59491904-59491923 None:intergenic 50.0%
GCTTTGCTTGCGAGTTTGGA+GGG - chr1_3:59491905-59491924 None:intergenic 50.0%
GACACTGCGGATCAATTGCT+AGG + chr1_3:59491929-59491948 Msa0129510:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr1_3:59491961-59491980 Msa0129510:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr1_3:59491555-59491574 Msa0129510:intron 50.0%
AAGCAATTCGCGACAAGGCA+AGG + chr1_3:59492858-59492877 Msa0129510:CDS 50.0%
TCGGGAGTTGAATGCGATTC+AGG + chr1_3:59493039-59493058 Msa0129510:CDS 50.0%
CCACAGGTTCCTAGTTACCT+TGG - chr1_3:59493201-59493220 None:intergenic 50.0%
CCAAGGTAACTAGGAACCTG+TGG + chr1_3:59493198-59493217 Msa0129510:intron 50.0%
GAACCTGTGGTTCTCAACTG+TGG + chr1_3:59493211-59493230 Msa0129510:intron 50.0%
GAATCGAACCAGGTACAGCT+TGG - chr1_3:59495026-59495045 None:intergenic 50.0%
CACCCAAAGAGAATCGAACC+AGG - chr1_3:59495036-59495055 None:intergenic 50.0%
CCTCCAATTCTTGCACACAC+CGG - chr1_3:59495449-59495468 None:intergenic 50.0%
CGGTGTGTGCAAGAATTGGA+GGG + chr1_3:59495447-59495466 Msa0129510:CDS 50.0%
!! GATAGTGGGAAAACCAGGGA+GGG + chr1_3:59495865-59495884 Msa0129510:CDS 50.0%
ATGAAGTCAACAACCCTCCC+TGG - chr1_3:59495881-59495900 None:intergenic 50.0%
!! AGGGAGGGTTGTTGACTTCA+TGG + chr1_3:59495880-59495899 Msa0129510:CDS 50.0%
GTCACTGACAAGGCCAACAT+AGG + chr1_3:59495926-59495945 Msa0129510:CDS 50.0%
CACTGACAAGGCCAACATAG+GGG + chr1_3:59495928-59495947 Msa0129510:CDS 50.0%
ATGCTTCCAGCTCCTCCTTA+TGG + chr1_3:59496291-59496310 Msa0129510:CDS 50.0%
TCTGTTCCATAAGGAGGAGC+TGG - chr1_3:59496300-59496319 None:intergenic 50.0%
GTTGAGAGAAGTGGATGCGG+CGG - chr1_3:59491098-59491117 None:intergenic 55.0%
! CCGTTTGGTTCGCGGGTTTA+GGG - chr1_3:59491329-59491348 None:intergenic 55.0%
CCCTAAACCCGCGAACCAAA+CGG + chr1_3:59491326-59491345 Msa0129510:intron 55.0%
! TCCGTTTGGTTCGCGGGTTT+AGG - chr1_3:59491330-59491349 None:intergenic 55.0%
! TTAGGGTCCGTTTGGTTCGC+GGG - chr1_3:59491336-59491355 None:intergenic 55.0%
TTGGAGGGGAAGGGAAGGAA+AGG + chr1_3:59491564-59491583 Msa0129510:intron 55.0%
AAAGTGGGATGGGAGGGCTT+TGG + chr1_3:59491626-59491645 Msa0129510:intron 55.0%
AAGTGGGATGGGAGGGCTTT+GGG + chr1_3:59491627-59491646 Msa0129510:intron 55.0%
GGCTTTGCTTGCGAGTTTGG+AGG - chr1_3:59491906-59491925 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr1_3:59491967-59491986 Msa0129510:intron 55.0%
TGGGTCACCGCATTGTTGGT+TGG - chr1_3:59492659-59492678 None:intergenic 55.0%
GCGCTCAAGTCCCTCTTAGA+TGG + chr1_3:59492959-59492978 Msa0129510:CDS 55.0%
ATGCGATTCAGGACAAGGCC+AGG + chr1_3:59493050-59493069 Msa0129510:CDS 55.0%
TTGCACACTTGTGCGACGCA+CGG + chr1_3:59493762-59493781 Msa0129510:intron 55.0%
! AACATTAGTGGGCGGTAGGG+AGG + chr1_3:59494248-59494267 Msa0129510:intron 55.0%
CCGGTGTGTGCAAGAATTGG+AGG + chr1_3:59495446-59495465 Msa0129510:CDS 55.0%
!! CGATAGTGGGAAAACCAGGG+AGG + chr1_3:59495864-59495883 Msa0129510:CDS 55.0%
GTGGATGCGGCGGATGTGTT+TGG - chr1_3:59491088-59491107 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+AGG + chr1_3:59491559-59491578 Msa0129510:intron 60.0%
GGGGAAGGGAAGGAAAGGCT+TGG + chr1_3:59491569-59491588 Msa0129510:intron 60.0%
AGTGGGATGGGAGGGCTTTG+GGG + chr1_3:59491628-59491647 Msa0129510:intron 60.0%
! AGGGGAAGGGAAGGCTTTGG+GGG - chr1_3:59491881-59491900 None:intergenic 60.0%
GAGGGGAAGGGAAGGCTTTG+GGG - chr1_3:59491882-59491901 None:intergenic 60.0%
GGAGGGGAAGGGAAGGCTTT+GGG - chr1_3:59491883-59491902 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG - chr1_3:59491894-59491913 None:intergenic 60.0%
CTTGCGAGTTTGGAGGGGAG+GGG - chr1_3:59491899-59491918 None:intergenic 60.0%
GCTTGCGAGTTTGGAGGGGA+GGG - chr1_3:59491900-59491919 None:intergenic 60.0%
TGCTTGCGAGTTTGGAGGGG+AGG - chr1_3:59491901-59491920 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+AGG + chr1_3:59491559-59491578 Msa0129510:intron 60.0%
TGCACACTTGTGCGACGCAC+GGG + chr1_3:59493763-59493782 Msa0129510:intron 60.0%
! ATTAGTGGGCGGTAGGGAGG+TGG + chr1_3:59494251-59494270 Msa0129510:intron 60.0%
!! GGAAGGGAAGGCTTTGGGGG+TGG - chr1_3:59491878-59491897 None:intergenic 65.0%
GGGAGGGGAAGGGAAGGCTT+TGG - chr1_3:59491884-59491903 None:intergenic 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG - chr1_3:59491890-59491909 None:intergenic 65.0%
CGAGTTTGGAGGGGAGGGGA+AGG - chr1_3:59491895-59491914 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59491049 59496366 59491049 ID=Msa0129510;Name=Msa0129510
chr1_3 mRNA 59491049 59496366 59491049 ID=Msa0129510-mRNA-1;Parent=Msa0129510;Name=Msa0129510-mRNA-1;_AED=0.19;_eAED=0.19;_QI=153|0.66|0.5|1|0.66|0.5|4|0|474
chr1_3 exon 59491049 59491197 59491049 ID=Msa0129510-mRNA-1:exon:19375;Parent=Msa0129510-mRNA-1
chr1_3 exon 59492634 59493133 59492634 ID=Msa0129510-mRNA-1:exon:19376;Parent=Msa0129510-mRNA-1
chr1_3 exon 59495347 59495634 59495347 ID=Msa0129510-mRNA-1:exon:19377;Parent=Msa0129510-mRNA-1
chr1_3 exon 59495726 59496366 59495726 ID=Msa0129510-mRNA-1:exon:19378;Parent=Msa0129510-mRNA-1
chr1_3 five_prime_UTR 59491049 59491197 59491049 ID=Msa0129510-mRNA-1:five_prime_utr;Parent=Msa0129510-mRNA-1
chr1_3 five_prime_UTR 59492634 59492637 59492634 ID=Msa0129510-mRNA-1:five_prime_utr;Parent=Msa0129510-mRNA-1
chr1_3 CDS 59492638 59493133 59492638 ID=Msa0129510-mRNA-1:cds;Parent=Msa0129510-mRNA-1
chr1_3 CDS 59495347 59495634 59495347 ID=Msa0129510-mRNA-1:cds;Parent=Msa0129510-mRNA-1
chr1_3 CDS 59495726 59496366 59495726 ID=Msa0129510-mRNA-1:cds;Parent=Msa0129510-mRNA-1
Gene Sequence

>Msa0129510

ATGGCGGCAAATAGTGATCCAACCAACAATGCGGTGACCCAAAATTGTAAGATTGGAGAGCTTCCCAAGGAAGATAATCCGAAAATTGGATACAATAGTGGTAAGCGTTGGTCAGATGATGAAAACAATGTGCTCAAGTCCGTCTTAAATGCAAAAAGTTGGGATGACATCAATTGGAAAGACATCAGGGATGAAGAAAAATTGTTTGGTCGGGATTTGAAAGCAATTCGCGACAAGGCAAGGAAACTTTTTAAAAAGGAAAGACAAGATCCGAAAATTAGATGCAATATTGGTAAGCCATGGTCAGAGGATGAAAACAATGCGCTCAAGTCCCTCTTAGATGGCAAAAGTTGGAAAGACATCAATTGGAAAGACATAAGGGATGAAGAAAAACTGTTTGGTCGGGAGTTGAATGCGATTCAGGACAAGGCCAGGAAGTTTTTTAAAAAGGAAATACATGAAAAAGAGTTCATCGAGTCAGATGGCAAAAGAAAAGGGAAAAAGGCGATGAAGGTAGCAGAGAACTGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAACACTAGATTTGGACGATCTCTTTCGGTTTTCCGGTGTGTGCAAGAATTGGAGGGCTTTTTATTGGAGAAATTTACTGGCATCGCAAGAACCGTTACTTCTTCAAGTTTCGTATAATCATAAGGAGTCATATTCCTTTATTAGCTTCCCCAACCAAAAGATTTATTGCTTGAAGATGATGGAGTACTTCCTTCACTCTATCTATGTTACGTCTTCTACCGTTAAGTCTAATATTTTTGCTTATCATACCTTACTTGCTTTTGGCAAATGCTCTGATGAATTTGTCTTGTTGGTTTTATGCAAAAGTTCTAGGAGTTTGCGTGTCTATCAATCTCAAAATTGTGGTTGGGTTACTTATTCGATAGTGGGAAAACCAGGGAGGGTTGTTGACTTCATGGTTTTGCATAATATAATATATGTTGTCACTGACAAGGCCAACATAGGGGTACTTAGCTTGAACTATGTAGATATTAAATTTCTAAAACTGAAGACTGTTCCCAATGTCCTATACCTTAGATTGGTCAACTGTAATGAGCAACTTTTAGTGGTTGATTCATCGTTGAAGGAAACAAGGAATATATACAAGATAGACTTCTCAACCATGAATTATGTCAAACTGGAAACTTTGGGCGACATTTCATTATTTCATGCTGCTAACAGAAACTATTATGCATTGAGCAACCCAAATAGGTGGGGATATGAAAGCAACTCTGTGTATGTCATCAGTCGTCTGTATACACAATGTAATGCGAATTCAGGGGATGATAAAAATTACAAAAATGTATCATGCTTCCAGCTCCTCCTTATGGAACAGATTCTCACATGTTGGATTGGTGTTTTAGACATCTACAATATGAGGTAG

Protein sequence

>Msa0129510

MAANSDPTNNAVTQNCKIGELPKEDNPKIGYNSGKRWSDDENNVLKSVLNAKSWDDINWKDIRDEEKLFGRDLKAIRDKARKLFKKERQDPKIRCNIGKPWSEDENNALKSLLDGKSWKDINWKDIRDEEKLFGRELNAIQDKARKFFKKEIHEKEFIESDGKRKGKKAMKVAENCELPWDVLDIISKTLDLDDLFRFSGVCKNWRAFYWRNLLASQEPLLLQVSYNHKESYSFISFPNQKIYCLKMMEYFLHSIYVTSSTVKSNIFAYHTLLAFGKCSDEFVLLVLCKSSRSLRVYQSQNCGWVTYSIVGKPGRVVDFMVLHNIIYVVTDKANIGVLSLNYVDIKFLKLKTVPNVLYLRLVNCNEQLLVVDSSLKETRNIYKIDFSTMNYVKLETLGDISLFHAANRNYYALSNPNRWGYESNSVYVISRLYTQCNANSGDDKNYKNVSCFQLLLMEQILTCWIGVLDIYNMR*