Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164590 | XP_003625822.1 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 1.41e-101 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164590 | sp|Q9LFU9|GNA1_ARATH | 71.724 | 145 | 41 | 0 | 7 | 151 | 3 | 147 | 8.83e-72 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164590 | G7KQU8 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 6.72e-102 | 299 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1164590 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006550 | Msa1164590 | 0.802581 | 5.242827e-49 | -8.615850e-47 |
| Msa0008220 | Msa1164590 | 0.809435 | 1.895009e-50 | -8.615850e-47 |
| Msa0023440 | Msa1164590 | 0.802958 | 4.381881e-49 | -8.615850e-47 |
| Msa0026660 | Msa1164590 | 0.800467 | 1.421719e-48 | -8.615850e-47 |
| Msa0027390 | Msa1164590 | 0.811130 | 8.164488e-51 | -8.615850e-47 |
| Msa0031180 | Msa1164590 | 0.817370 | 3.416423e-52 | -8.615850e-47 |
| Msa0031820 | Msa1164590 | 0.800630 | 1.317292e-48 | -8.615850e-47 |
| Msa0036140 | Msa1164590 | 0.810609 | 1.058861e-50 | -8.615850e-47 |
| Msa0037160 | Msa1164590 | 0.813522 | 2.453425e-51 | -8.615850e-47 |
| Msa0037840 | Msa1164590 | 0.801813 | 7.543449e-49 | -8.615850e-47 |
| Msa0042550 | Msa1164590 | 0.804565 | 2.032117e-49 | -8.615850e-47 |
| Msa0043500 | Msa1164590 | 0.809858 | 1.536869e-50 | -8.615850e-47 |
| Msa0056450 | Msa1164590 | 0.811792 | 5.862775e-51 | -8.615850e-47 |
| Msa0057370 | Msa1164590 | 0.810856 | 9.363273e-51 | -8.615850e-47 |
| Msa0078480 | Msa1164590 | 0.806969 | 6.353234e-50 | -8.615850e-47 |
| Msa0079110 | Msa1164590 | 0.806119 | 9.604029e-50 | -8.615850e-47 |
| Msa0081650 | Msa1164590 | 0.800953 | 1.131652e-48 | -8.615850e-47 |
| Msa0084080 | Msa1164590 | 0.809281 | 2.045137e-50 | -8.615850e-47 |
| Msa0090550 | Msa1164590 | 0.801080 | 1.065868e-48 | -8.615850e-47 |
| Msa0096580 | Msa1164590 | 0.803235 | 3.839964e-49 | -8.615850e-47 |
| Msa0097590 | Msa1164590 | 0.821102 | 4.824959e-53 | -8.615850e-47 |
| Msa0097610 | Msa1164590 | 0.818816 | 1.609055e-52 | -8.615850e-47 |
| Msa0104700 | Msa1164590 | 0.809076 | 2.261850e-50 | -8.615850e-47 |
| Msa0603670 | Msa1164590 | 0.810117 | 1.351650e-50 | -8.615850e-47 |
| Msa0610500 | Msa1164590 | 0.826269 | 2.976220e-54 | -8.615850e-47 |
| Msa0614510 | Msa1164590 | 0.809143 | 2.189244e-50 | -8.615850e-47 |
| Msa0615220 | Msa1164590 | 0.812500 | 4.109363e-51 | -8.615850e-47 |
| Msa0617580 | Msa1164590 | 0.800905 | 1.157518e-48 | -8.615850e-47 |
| Msa0620620 | Msa1164590 | 0.819658 | 1.034711e-52 | -8.615850e-47 |
| Msa0629650 | Msa1164590 | 0.808598 | 2.863260e-50 | -8.615850e-47 |
| Msa0636020 | Msa1164590 | 0.862246 | 5.805285e-64 | -8.615850e-47 |
| Msa0637900 | Msa1164590 | 0.831737 | 1.409058e-55 | -8.615850e-47 |
| Msa0641730 | Msa1164590 | 0.808710 | 2.709465e-50 | -8.615850e-47 |
| Msa0644660 | Msa1164590 | 0.813012 | 3.174482e-51 | -8.615850e-47 |
| Msa0651150 | Msa1164590 | 0.821653 | 3.601143e-53 | -8.615850e-47 |
| Msa0651270 | Msa1164590 | 0.807860 | 4.112638e-50 | -8.615850e-47 |
| Msa0679550 | Msa1164590 | 0.803377 | 3.588692e-49 | -8.615850e-47 |
| Msa0682090 | Msa1164590 | 0.805887 | 1.074529e-49 | -8.615850e-47 |
| Msa0682140 | Msa1164590 | 0.803471 | 3.430767e-49 | -8.615850e-47 |
| Msa0685140 | Msa1164590 | 0.800681 | 1.285565e-48 | -8.615850e-47 |
| Msa0686080 | Msa1164590 | 0.811370 | 7.244240e-51 | -8.615850e-47 |
| Msa0706400 | Msa1164590 | 0.805541 | 1.270288e-49 | -8.615850e-47 |
| Msa0709160 | Msa1164590 | 0.806054 | 9.907830e-50 | -8.615850e-47 |
| Msa0721970 | Msa1164590 | 0.808254 | 3.389869e-50 | -8.615850e-47 |
| Msa0737560 | Msa1164590 | 0.805768 | 1.137937e-49 | -8.615850e-47 |
| Msa0749440 | Msa1164590 | 0.815604 | 8.488455e-52 | -8.615850e-47 |
| Msa0751850 | Msa1164590 | 0.811355 | 7.296901e-51 | -8.615850e-47 |
| Msa0756530 | Msa1164590 | 0.809194 | 2.134223e-50 | -8.615850e-47 |
| Msa0777320 | Msa1164590 | 0.821167 | 4.662398e-53 | -8.615850e-47 |
| Msa0784380 | Msa1164590 | 0.832172 | 1.099873e-55 | -8.615850e-47 |
| Msa0805430 | Msa1164590 | 0.836297 | 1.016106e-56 | -8.615850e-47 |
| Msa0821190 | Msa1164590 | 0.830567 | 2.730561e-55 | -8.615850e-47 |
| Msa0826760 | Msa1164590 | 0.816090 | 6.614451e-52 | -8.615850e-47 |
| Msa0832090 | Msa1164590 | 0.807830 | 4.172016e-50 | -8.615850e-47 |
| Msa0129510 | Msa1164590 | 0.800446 | 1.436056e-48 | -8.615850e-47 |
| Msa0131330 | Msa1164590 | 0.812289 | 4.570084e-51 | -8.615850e-47 |
| Msa0135420 | Msa1164590 | 0.814146 | 1.787654e-51 | -8.615850e-47 |
| Msa0138020 | Msa1164590 | 0.807679 | 4.492572e-50 | -8.615850e-47 |
| Msa0138750 | Msa1164590 | 0.806798 | 6.903845e-50 | -8.615850e-47 |
| Msa0146770 | Msa1164590 | 0.802460 | 5.551000e-49 | -8.615850e-47 |
| Msa0150990 | Msa1164590 | 0.803386 | 3.573933e-49 | -8.615850e-47 |
| Msa0160670 | Msa1164590 | 0.811075 | 8.393018e-51 | -8.615850e-47 |
| Msa0165300 | Msa1164590 | 0.807190 | 5.705881e-50 | -8.615850e-47 |
| Msa0168870 | Msa1164590 | 0.807275 | 5.472315e-50 | -8.615850e-47 |
| Msa0178510 | Msa1164590 | 0.820633 | 6.188446e-53 | -8.615850e-47 |
| Msa0185510 | Msa1164590 | 0.802784 | 4.761105e-49 | -8.615850e-47 |
| Msa0197660 | Msa1164590 | 0.804181 | 2.443855e-49 | -8.615850e-47 |
| Msa0212990 | Msa1164590 | 0.812151 | 4.897787e-51 | -8.615850e-47 |
| Msa0224030 | Msa1164590 | 0.803070 | 4.154107e-49 | -8.615850e-47 |
| Msa0225220 | Msa1164590 | 0.800114 | 1.677840e-48 | -8.615850e-47 |
| Msa0365860 | Msa1164590 | 0.807658 | 4.538802e-50 | -8.615850e-47 |
| Msa0371250 | Msa1164590 | 0.805054 | 1.606040e-49 | -8.615850e-47 |
| Msa0378970 | Msa1164590 | 0.800598 | 1.336920e-48 | -8.615850e-47 |
| Msa0382270 | Msa1164590 | 0.800945 | 1.135684e-48 | -8.615850e-47 |
| Msa0385490 | Msa1164590 | 0.809008 | 2.339013e-50 | -8.615850e-47 |
| Msa0389910 | Msa1164590 | 0.801203 | 1.005952e-48 | -8.615850e-47 |
| Msa0428050 | Msa1164590 | 0.832932 | 7.126474e-56 | -8.615850e-47 |
| Msa0430950 | Msa1164590 | 0.813124 | 2.999318e-51 | -8.615850e-47 |
| Msa0437400 | Msa1164590 | 0.801467 | 8.879720e-49 | -8.615850e-47 |
| Msa0468320 | Msa1164590 | 0.817426 | 3.318540e-52 | -8.615850e-47 |
| Msa0474390 | Msa1164590 | 0.800214 | 1.600946e-48 | -8.615850e-47 |
| Msa0479200 | Msa1164590 | 0.801997 | 6.913026e-49 | -8.615850e-47 |
| Msa0980020 | Msa1164590 | 0.809277 | 2.048957e-50 | -8.615850e-47 |
| Msa0990590 | Msa1164590 | 0.802045 | 6.760079e-49 | -8.615850e-47 |
| Msa1008750 | Msa1164590 | 0.821221 | 4.529688e-53 | -8.615850e-47 |
| Msa1021510 | Msa1164590 | 0.806281 | 8.878885e-50 | -8.615850e-47 |
| Msa1031820 | Msa1164590 | 0.800074 | 1.709334e-48 | -8.615850e-47 |
| Msa1034290 | Msa1164590 | 0.801443 | 8.983516e-49 | -8.615850e-47 |
| Msa1038080 | Msa1164590 | 0.822399 | 2.418804e-53 | -8.615850e-47 |
| Msa1050420 | Msa1164590 | 0.803945 | 2.735578e-49 | -8.615850e-47 |
| Msa1064250 | Msa1164590 | 0.807305 | 5.393813e-50 | -8.615850e-47 |
| Msa1070840 | Msa1164590 | 0.816366 | 5.738607e-52 | -8.615850e-47 |
| Msa1071320 | Msa1164590 | 0.801429 | 9.042178e-49 | -8.615850e-47 |
| Msa1080640 | Msa1164590 | 0.805840 | 1.099382e-49 | -8.615850e-47 |
| Msa1080800 | Msa1164590 | 0.802602 | 5.189770e-49 | -8.615850e-47 |
| Msa1082500 | Msa1164590 | 0.814261 | 1.686159e-51 | -8.615850e-47 |
| Msa1087980 | Msa1164590 | 0.800025 | 1.749075e-48 | -8.615850e-47 |
| Msa1095650 | Msa1164590 | 0.805805 | 1.118047e-49 | -8.615850e-47 |
| Msa1096060 | Msa1164590 | 0.802236 | 6.173909e-49 | -8.615850e-47 |
| Msa1098890 | Msa1164590 | 0.800802 | 1.214691e-48 | -8.615850e-47 |
| Msa1105500 | Msa1164590 | 0.805870 | 1.083082e-49 | -8.615850e-47 |
| Msa0239800 | Msa1164590 | 0.804292 | 2.316591e-49 | -8.615850e-47 |
| Msa0240300 | Msa1164590 | 0.803722 | 3.043539e-49 | -8.615850e-47 |
| Msa0241140 | Msa1164590 | 0.800485 | 1.410002e-48 | -8.615850e-47 |
| Msa0241470 | Msa1164590 | 0.831514 | 1.598430e-55 | -8.615850e-47 |
| Msa0245850 | Msa1164590 | 0.800102 | 1.687281e-48 | -8.615850e-47 |
| Msa0253290 | Msa1164590 | 0.814532 | 1.468895e-51 | -8.615850e-47 |
| Msa0257500 | Msa1164590 | 0.818556 | 1.843060e-52 | -8.615850e-47 |
| Msa0259270 | Msa1164590 | 0.803482 | 3.413679e-49 | -8.615850e-47 |
| Msa0271530 | Msa1164590 | 0.807701 | 4.445567e-50 | -8.615850e-47 |
| Msa0290760 | Msa1164590 | 0.803379 | 3.585767e-49 | -8.615850e-47 |
| Msa0292120 | Msa1164590 | 0.819704 | 1.009656e-52 | -8.615850e-47 |
| Msa0302980 | Msa1164590 | 0.804317 | 2.289107e-49 | -8.615850e-47 |
| Msa0308550 | Msa1164590 | 0.822246 | 2.625408e-53 | -8.615850e-47 |
| Msa0317510 | Msa1164590 | 0.808832 | 2.551965e-50 | -8.615850e-47 |
| Msa0330340 | Msa1164590 | 0.804207 | 2.412928e-49 | -8.615850e-47 |
| Msa0342010 | Msa1164590 | 0.818823 | 1.602933e-52 | -8.615850e-47 |
| Msa0360210 | Msa1164590 | 0.801705 | 7.937770e-49 | -8.615850e-47 |
| Msa1113010 | Msa1164590 | 0.800115 | 1.677098e-48 | -8.615850e-47 |
| Msa1118760 | Msa1164590 | 0.822088 | 2.855399e-53 | -8.615850e-47 |
| Msa1125470 | Msa1164590 | 0.895715 | 7.362371e-76 | -8.615850e-47 |
| Msa1125550 | Msa1164590 | 0.887910 | 9.415379e-73 | -8.615850e-47 |
| Msa1127830 | Msa1164590 | 0.801049 | 1.081790e-48 | -8.615850e-47 |
| Msa1129690 | Msa1164590 | 0.802155 | 6.415503e-49 | -8.615850e-47 |
| Msa1130530 | Msa1164590 | 0.814332 | 1.626119e-51 | -8.615850e-47 |
| Msa1143020 | Msa1164590 | 0.800715 | 1.265334e-48 | -8.615850e-47 |
| Msa1158660 | Msa1164590 | 0.824739 | 6.854675e-54 | -8.615850e-47 |
| Msa1163540 | Msa1164590 | 0.800365 | 1.491611e-48 | -8.615850e-47 |
| Msa1164590 | Msa1185980 | 0.806257 | 8.979849e-50 | -8.615850e-47 |
| Msa1164590 | Msa1204630 | 0.806329 | 8.672353e-50 | -8.615850e-47 |
| Msa1164590 | Msa1236890 | 0.817701 | 2.876323e-52 | -8.615850e-47 |
| Msa1164590 | Msa1240180 | 0.808575 | 2.895370e-50 | -8.615850e-47 |
| Msa1164590 | Msa1240210 | 0.808637 | 2.808783e-50 | -8.615850e-47 |
| Msa1164590 | Msa1257130 | 0.814695 | 1.351233e-51 | -8.615850e-47 |
| Msa1164590 | Msa1258370 | 0.802431 | 5.629536e-49 | -8.615850e-47 |
| Msa1164590 | Msa1270660 | 0.811661 | 6.261354e-51 | -8.615850e-47 |
| Msa1164590 | Msa1280620 | 0.805008 | 1.642095e-49 | -8.615850e-47 |
| Msa1164590 | Msa1286550 | 0.810297 | 1.236051e-50 | -8.615850e-47 |
| Msa1164590 | Msa1307550 | 0.802931 | 4.437925e-49 | -8.615850e-47 |
| Msa1164590 | Msa1320620 | 0.804994 | 1.653898e-49 | -8.615850e-47 |
| Msa1164590 | Msa1341490 | 0.804890 | 1.738757e-49 | -8.615850e-47 |
| Msa1164590 | Msa1368430 | 0.801690 | 7.995926e-49 | -8.615850e-47 |
| Msa1164590 | Msa1371940 | 0.816735 | 4.743648e-52 | -8.615850e-47 |
| Msa1164590 | Msa1372150 | 0.816021 | 6.854929e-52 | -8.615850e-47 |
| Msa1164590 | Msa1376130 | 0.816880 | 4.401541e-52 | -8.615850e-47 |
| Msa1164590 | Msa1377570 | 0.815175 | 1.057430e-51 | -8.615850e-47 |
| Msa1164590 | Msa1381480 | 0.806209 | 9.190806e-50 | -8.615850e-47 |
| Msa1164590 | Msa1382790 | 0.809397 | 1.931337e-50 | -8.615850e-47 |
| Msa1164590 | Msa1384870 | 0.828944 | 6.783517e-55 | -8.615850e-47 |
| Msa1164590 | Msa1386230 | 0.894498 | 2.330770e-75 | -8.615850e-47 |
| Msa1164590 | Msa1388450 | 0.816668 | 4.911371e-52 | -8.615850e-47 |
| Msa1164590 | Msa1388860 | 0.805016 | 1.636430e-49 | -8.615850e-47 |
| Msa1164590 | Msa1389850 | 0.819517 | 1.114288e-52 | -8.615850e-47 |
| Msa1164590 | Msa1389880 | 0.834110 | 3.622130e-56 | -8.615850e-47 |
| Msa1164590 | Msa1415940 | 0.803435 | 3.491117e-49 | -8.615850e-47 |
| Msa1164590 | Msa1424780 | 0.808308 | 3.301494e-50 | -8.615850e-47 |
| Msa1164590 | Msa1426570 | 0.805930 | 1.052156e-49 | -8.615850e-47 |
| Msa1164590 | Msa1435070 | 0.815676 | 8.184098e-52 | -8.615850e-47 |
| Msa1164590 | Msa1435400 | 0.809013 | 2.333934e-50 | -8.615850e-47 |
| Msa1164590 | Msa1437210 | 0.828861 | 7.105391e-55 | -8.615850e-47 |
| Msa1164590 | Msa1439700 | 0.817631 | 2.984070e-52 | -8.615850e-47 |
| Msa1164590 | Msa1450720 | 0.800403 | 1.465224e-48 | -8.615850e-47 |
| Msa1164590 | Msa1462930 | 0.802708 | 4.934590e-49 | -8.615850e-47 |
| Msa0484780 | Msa1164590 | 0.817973 | 2.497107e-52 | -8.615850e-47 |
| Msa0512870 | Msa1164590 | 0.814356 | 1.606534e-51 | -8.615850e-47 |
| Msa0517090 | Msa1164590 | 0.823147 | 1.619458e-53 | -8.615850e-47 |
| Msa0518440 | Msa1164590 | 0.814488 | 1.502267e-51 | -8.615850e-47 |
| Msa0520710 | Msa1164590 | 0.803486 | 3.407122e-49 | -8.615850e-47 |
| Msa0521670 | Msa1164590 | 0.804968 | 1.674594e-49 | -8.615850e-47 |
| Msa0532540 | Msa1164590 | 0.809452 | 1.879146e-50 | -8.615850e-47 |
| Msa0532980 | Msa1164590 | 0.810361 | 1.197589e-50 | -8.615850e-47 |
| Msa0545060 | Msa1164590 | 0.810117 | 1.352091e-50 | -8.615850e-47 |
| Msa0546570 | Msa1164590 | 0.801908 | 7.209760e-49 | -8.615850e-47 |
| Msa0559500 | Msa1164590 | 0.803878 | 2.825390e-49 | -8.615850e-47 |
| Msa0574390 | Msa1164590 | 0.813641 | 2.309013e-51 | -8.615850e-47 |
| Msa0576680 | Msa1164590 | 0.820025 | 8.528346e-53 | -8.615850e-47 |
| Msa0589390 | Msa1164590 | 0.811778 | 5.905502e-51 | -8.615850e-47 |
| Msa0597000 | Msa1164590 | 0.808995 | 2.354752e-50 | -8.615850e-47 |
| Msa0598160 | Msa1164590 | 0.822224 | 2.656169e-53 | -8.615850e-47 |
| Msa0844110 | Msa1164590 | 0.806982 | 6.312424e-50 | -8.615850e-47 |
| Msa0861930 | Msa1164590 | 0.800268 | 1.561087e-48 | -8.615850e-47 |
| Msa0869590 | Msa1164590 | 0.806434 | 8.240526e-50 | -8.615850e-47 |
| Msa0873860 | Msa1164590 | 0.809068 | 2.271004e-50 | -8.615850e-47 |
| Msa0880040 | Msa1164590 | 0.809154 | 2.177031e-50 | -8.615850e-47 |
| Msa0881580 | Msa1164590 | 0.802642 | 5.093157e-49 | -8.615850e-47 |
| Msa0899350 | Msa1164590 | 0.809437 | 1.893149e-50 | -8.615850e-47 |
| Msa0901320 | Msa1164590 | 0.816495 | 5.369068e-52 | -8.615850e-47 |
| Msa0906690 | Msa1164590 | 0.809459 | 1.872720e-50 | -8.615850e-47 |
| Msa0939000 | Msa1164590 | 0.813382 | 2.633325e-51 | -8.615850e-47 |
| Msa0965020 | Msa1164590 | 0.814490 | 1.499988e-51 | -8.615850e-47 |
| Msa0970320 | Msa1164590 | 0.815445 | 9.211037e-52 | -8.615850e-47 |
| Msa0975940 | Msa1164590 | 0.809447 | 1.883832e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164590 | MtrunA17_Chr7g0266301 | 96.078 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 1.29e-105 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164590 | AT5G15770.1 | 71.724 | 145 | 41 | 0 | 7 | 151 | 3 | 147 | 8.98e-73 | 216 |
Find 93 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACTATCTTATTATTT+TGG | 0.145935 | 7_4:-56310597 | Msa1164590:three_prime_UTR |
| ATAGGACAAGGTTGTCTTTA+TGG | 0.149759 | 7_4:-56311174 | Msa1164590:three_prime_UTR |
| CCCCGTTGCAATAATCTTTC+CGG | 0.199227 | 7_4:+56312258 | None:intergenic |
| ATTCTTTGTTACAGCTCTTA+TGG | 0.246528 | 7_4:-56310837 | Msa1164590:three_prime_UTR |
| GTCTGTAATCTCTAATCTTC+TGG | 0.252175 | 7_4:+56312420 | None:intergenic |
| AGTACTTCAAGATGTCTTTA+AGG | 0.262133 | 7_4:-56311549 | Msa1164590:three_prime_UTR |
| AAAGGCATTGAAAGAATAAA+AGG | 0.271574 | 7_4:+56311714 | None:intergenic |
| AATTTGCCTGTTCAATGATT+TGG | 0.272978 | 7_4:-56310904 | Msa1164590:three_prime_UTR |
| CTTGAAGTACTTACGGAAAT+AGG | 0.282874 | 7_4:+56311561 | None:intergenic |
| CAGCAGTACATGTTCCTTCC+TGG | 0.283965 | 7_4:-56310753 | Msa1164590:three_prime_UTR |
| CTCTTATGGTACATTTGAAA+TGG | 0.294554 | 7_4:-56310823 | Msa1164590:three_prime_UTR |
| TCGTTCTGTTGGGTGTTATA+AGG | 0.300594 | 7_4:-56312104 | Msa1164590:CDS |
| AATGGGACCTTGATGCTCTT+TGG | 0.301050 | 7_4:-56310805 | Msa1164590:three_prime_UTR |
| TCCATGATTATGTCATTATA+CGG | 0.317864 | 7_4:+56310692 | None:intergenic |
| TTCAATGATTTGGGTGCTTA+AGG | 0.318125 | 7_4:-56310894 | Msa1164590:three_prime_UTR |
| ATTTGCCTGTTCAATGATTT+GGG | 0.332911 | 7_4:-56310903 | Msa1164590:three_prime_UTR |
| TCTTGATTCTTCTATTAAAC+AGG | 0.346474 | 7_4:-56310660 | Msa1164590:three_prime_UTR |
| TAAGAAATTGTGGTAAAGTT+GGG | 0.348212 | 7_4:-56312210 | Msa1164590:CDS |
| GGTTTACTAGATTGAGTTGA+TGG | 0.350822 | 7_4:-56310732 | Msa1164590:three_prime_UTR |
| TTAAGAAATTGTGGTAAAGT+TGG | 0.366943 | 7_4:-56312211 | Msa1164590:CDS |
| ACCGATCATGCTCGTTCTGT+TGG | 0.371791 | 7_4:-56312115 | Msa1164590:CDS |
| AGTGCTCGTGGGAAACAATT+GGG | 0.376890 | 7_4:-56312160 | Msa1164590:CDS |
| TCCATTTATTACAAAAGTTA+AGG | 0.378259 | 7_4:-56310937 | Msa1164590:three_prime_UTR |
| ACCGGAAAGATTATTGCAAC+GGG | 0.406061 | 7_4:-56312259 | Msa1164590:CDS |
| GACTAAACAAGCACATGTTT+CGG | 0.406211 | 7_4:+56311272 | None:intergenic |
| TCTGTTATTTACATGTGTTA+TGG | 0.410531 | 7_4:-56311390 | Msa1164590:three_prime_UTR |
| ATGCTCTTTGGAAATGAAAT+CGG | 0.416361 | 7_4:-56310793 | Msa1164590:three_prime_UTR |
| GTTATTGAAGATGAGATTAC+CGG | 0.417687 | 7_4:-56312277 | Msa1164590:CDS |
| AAGTGCTCGTGGGAAACAAT+TGG | 0.427736 | 7_4:-56312161 | Msa1164590:CDS |
| CTCACTGTTATCTGTACTCT+TGG | 0.434639 | 7_4:-56311327 | Msa1164590:three_prime_UTR |
| GCTATTGTAGCCTGACCTCT+TGG | 0.434948 | 7_4:-56311305 | Msa1164590:three_prime_UTR |
| TAATCTTTCACTAAAAGAAA+TGG | 0.436591 | 7_4:+56311465 | None:intergenic |
| AACATTATTCGTAGTACATA+AGG | 0.443215 | 7_4:+56311493 | None:intergenic |
| CCGATCATGCTCGTTCTGTT+GGG | 0.443895 | 7_4:-56312114 | Msa1164590:CDS |
| GTTGTGCATAGTGTTCATTT+TGG | 0.445522 | 7_4:-56311585 | Msa1164590:three_prime_UTR |
| CCATTGATGGTAGTTAATAA+AGG | 0.447441 | 7_4:+56311696 | None:intergenic |
| AGTCTCTGATAAGGAATTTG+AGG | 0.451854 | 7_4:-56312347 | Msa1164590:CDS |
| GATCAGAATTACAGCTGAAC+CGG | 0.453557 | 7_4:+56311127 | None:intergenic |
| TCTTATGGTACATTTGAAAT+GGG | 0.455229 | 7_4:-56310822 | Msa1164590:three_prime_UTR |
| AAGACATCTTGAAGTACTTA+CGG | 0.459475 | 7_4:+56311554 | None:intergenic |
| CCTTTATTAACTACCATCAA+TGG | 0.464898 | 7_4:-56311696 | Msa1164590:CDS |
| TTGTGATTCAGTCTCTGATA+AGG | 0.468883 | 7_4:-56312356 | Msa1164590:CDS |
| AAGCACCCAAATCATTGAAC+AGG | 0.470933 | 7_4:+56310898 | None:intergenic |
| TTTCGAGAGGTTGATTCACT+TGG | 0.471380 | 7_4:-56312319 | Msa1164590:CDS |
| CAGGAAAGGCAGACAATACA+AGG | 0.485502 | 7_4:+56310563 | None:intergenic |
| ATGAACACTATGCACAACTC+TGG | 0.493471 | 7_4:+56311590 | None:intergenic |
| CGATTGCAGTGTTGAGAACA+AGG | 0.494534 | 7_4:-56312074 | Msa1164590:CDS |
| CTATGAGAAATGTGGTTTCA+AGG | 0.496011 | 7_4:-56312047 | Msa1164590:CDS |
| TTCTATTAAACAGGTGTGGT+GGG | 0.498747 | 7_4:-56310651 | Msa1164590:three_prime_UTR |
| ATTAAACAGGTGTGGTGGGT+TGG | 0.504335 | 7_4:-56310647 | Msa1164590:three_prime_UTR |
| CTTCTATTAAACAGGTGTGG+TGG | 0.504663 | 7_4:-56310652 | Msa1164590:three_prime_UTR |
| TTTGATAAGTTGATTAACAT+AGG | 0.509680 | 7_4:-56311192 | Msa1164590:three_prime_UTR |
| GTACATAAGGCGATGTATGA+TGG | 0.511132 | 7_4:+56311506 | None:intergenic |
| GAATTATGAGGACAAGCATA+TGG | 0.517162 | 7_4:-56310872 | Msa1164590:three_prime_UTR |
| TTGCACATAGCCAAGAGGTC+AGG | 0.517249 | 7_4:+56311295 | None:intergenic |
| ACCGTATAATGACATAATCA+TGG | 0.518108 | 7_4:-56310693 | Msa1164590:three_prime_UTR |
| CCCAACAGAACGAGCATGAT+CGG | 0.532044 | 7_4:+56312114 | None:intergenic |
| GAACTGGTGGCGTCAATATG+TGG | 0.532781 | 7_4:+56311225 | None:intergenic |
| TCAACTGCGACAATATTTGT+AGG | 0.535633 | 7_4:-56311051 | Msa1164590:three_prime_UTR |
| GTCATAGAACTCTAGAAAGC+AGG | 0.537605 | 7_4:+56311639 | None:intergenic |
| TTTATTACAAAAGTTAAGGA+AGG | 0.538052 | 7_4:-56310933 | Msa1164590:three_prime_UTR |
| TTCATTTCCAAAGAGCATCA+AGG | 0.542913 | 7_4:+56310798 | None:intergenic |
| TACCGGAAAGATTATTGCAA+CGG | 0.546187 | 7_4:-56312260 | Msa1164590:CDS |
| GTTTACTAGATTGAGTTGAT+GGG | 0.550046 | 7_4:-56310731 | Msa1164590:three_prime_UTR |
| AGCTGTAACAAAGAATTTCG+AGG | 0.550946 | 7_4:+56310844 | None:intergenic |
| ACAATGGTAGGAGCCATTGA+TGG | 0.564879 | 7_4:+56311683 | None:intergenic |
| CAAGGAGAAAGAAGTTCAGA+TGG | 0.566779 | 7_4:-56312029 | Msa1164590:CDS |
| ATTCTTCTATTAAACAGGTG+TGG | 0.567164 | 7_4:-56310655 | Msa1164590:three_prime_UTR |
| AATGAAATCGGTAGTGTGGT+AGG | 0.569963 | 7_4:-56310781 | Msa1164590:three_prime_UTR |
| AACTGGTGGCGTCAATATGT+GGG | 0.574135 | 7_4:+56311226 | None:intergenic |
| CAAACATCCACTACAATGGT+AGG | 0.582996 | 7_4:+56311671 | None:intergenic |
| TGGGTGCTTAAGGAATTATG+AGG | 0.585630 | 7_4:-56310884 | Msa1164590:three_prime_UTR |
| GACAATATTTGTAGGACGGA+GGG | 0.592262 | 7_4:-56311043 | Msa1164590:three_prime_UTR |
| AATGGCTCCTACCATTGTAG+TGG | 0.602674 | 7_4:-56311678 | Msa1164590:CDS |
| TCAACTCAATCTAGTAAACC+AGG | 0.605659 | 7_4:+56310735 | None:intergenic |
| AATGCATTAAGTATTGAGAC+CGG | 0.605727 | 7_4:-56311146 | Msa1164590:three_prime_UTR |
| GTTGTGGATTCAAGTGCTCG+TGG | 0.610212 | 7_4:-56312172 | Msa1164590:CDS |
| GAACGTTCTATCAACAGGAA+AGG | 0.613225 | 7_4:+56310549 | None:intergenic |
| ATTTGAGGATCGATTTCGAG+AGG | 0.616403 | 7_4:-56312332 | Msa1164590:CDS |
| GCATATAGAAGATGTTGTTG+TGG | 0.621571 | 7_4:-56312188 | Msa1164590:CDS |
| GTGCTCGTGGGAAACAATTG+GGG | 0.624260 | 7_4:-56312159 | Msa1164590:CDS |
| TGGAAATGAAATCGGTAGTG+TGG | 0.625238 | 7_4:-56310785 | Msa1164590:three_prime_UTR |
| CGACAATATTTGTAGGACGG+AGG | 0.628838 | 7_4:-56311044 | Msa1164590:three_prime_UTR |
| CTGCGACAATATTTGTAGGA+CGG | 0.635219 | 7_4:-56311047 | Msa1164590:three_prime_UTR |
| GCATGAAAAGCAGTTCATAG+AGG | 0.636091 | 7_4:-56310973 | Msa1164590:three_prime_UTR |
| CTCAATCTAGTAAACCAGGA+AGG | 0.641311 | 7_4:+56310739 | None:intergenic |
| TTGTGGATTCAAGTGCTCGT+GGG | 0.642750 | 7_4:-56312171 | Msa1164590:CDS |
| AAGTTGATTAACATAGGACA+AGG | 0.658019 | 7_4:-56311186 | Msa1164590:three_prime_UTR |
| CTTGCAAACATCCACTACAA+TGG | 0.659022 | 7_4:+56311667 | None:intergenic |
| AAGGTGTTCTATGAGAAATG+TGG | 0.671486 | 7_4:-56312055 | Msa1164590:CDS |
| TTCGGTTGCACATAGCCAAG+AGG | 0.685196 | 7_4:+56311290 | None:intergenic |
| TTAGAAGATGCAAAACAGTG+AGG | 0.719583 | 7_4:-56312458 | None:intergenic |
| CCGGAAAGATTATTGCAACG+GGG | 0.727047 | 7_4:-56312258 | Msa1164590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTTAAGAAATTG+TGG | - | chr7_4:56310793-56310812 | Msa1164590:three_prime_UTR | 15.0% |
| !!! | ATTTTTTAAAGATTGATATC+AGG | + | chr7_4:56311403-56311422 | None:intergenic | 15.0% |
| !! | GATAGTTCAAAAAATAAAAA+AGG | + | chr7_4:56312407-56312426 | None:intergenic | 15.0% |
| !!! | TTTGAACTATCTTATTATTT+TGG | - | chr7_4:56312416-56312435 | Msa1164590:CDS | 15.0% |
| !!! | AAGAAATTTTTAAGAAATTG+TGG | - | chr7_4:56310793-56310812 | Msa1164590:three_prime_UTR | 15.0% |
| !!! | ATTTTTTAAAGATTGATATC+AGG | + | chr7_4:56311403-56311422 | None:intergenic | 15.0% |
| !! | GATAGTTCAAAAAATAAAAA+AGG | + | chr7_4:56312407-56312426 | None:intergenic | 15.0% |
| !!! | TTTGAACTATCTTATTATTT+TGG | - | chr7_4:56312416-56312435 | Msa1164590:CDS | 15.0% |
| !! | TAATCTTTCACTAAAAGAAA+TGG | + | chr7_4:56311551-56311570 | None:intergenic | 20.0% |
| !!! | TTTGATAAGTTGATTAACAT+AGG | - | chr7_4:56311821-56311840 | Msa1164590:intron | 20.0% |
| !!! | TTTTCTTAATTTGTGTCAAA+TGG | - | chr7_4:56311939-56311958 | Msa1164590:intron | 20.0% |
| !! | TCCATTTATTACAAAAGTTA+AGG | - | chr7_4:56312076-56312095 | Msa1164590:CDS | 20.0% |
| !!! | TCCTTAACTTTTGTAATAAA+TGG | + | chr7_4:56312080-56312099 | None:intergenic | 20.0% |
| !! | TTTATTACAAAAGTTAAGGA+AGG | - | chr7_4:56312080-56312099 | Msa1164590:CDS | 20.0% |
| !! | TAATCTTTCACTAAAAGAAA+TGG | + | chr7_4:56311551-56311570 | None:intergenic | 20.0% |
| !!! | TTTGATAAGTTGATTAACAT+AGG | - | chr7_4:56311821-56311840 | Msa1164590:intron | 20.0% |
| !!! | TTTTCTTAATTTGTGTCAAA+TGG | - | chr7_4:56311939-56311958 | Msa1164590:intron | 20.0% |
| !! | TCCATTTATTACAAAAGTTA+AGG | - | chr7_4:56312076-56312095 | Msa1164590:CDS | 20.0% |
| !!! | TCCTTAACTTTTGTAATAAA+TGG | + | chr7_4:56312080-56312099 | None:intergenic | 20.0% |
| !! | TTTATTACAAAAGTTAAGGA+AGG | - | chr7_4:56312080-56312099 | Msa1164590:CDS | 20.0% |
| ! | TTAAGAAATTGTGGTAAAGT+TGG | - | chr7_4:56310802-56310821 | Msa1164590:three_prime_UTR | 25.0% |
| ! | TAAGAAATTGTGGTAAAGTT+GGG | - | chr7_4:56310803-56310822 | Msa1164590:three_prime_UTR | 25.0% |
| !!! | TTCTTTTATTTCTCATGTGA+TGG | - | chr7_4:56311058-56311077 | Msa1164590:three_prime_UTR | 25.0% |
| !!! | AAAGGCATTGAAAGAATAAA+AGG | + | chr7_4:56311302-56311321 | None:intergenic | 25.0% |
| ! | AACATTATTCGTAGTACATA+AGG | + | chr7_4:56311523-56311542 | None:intergenic | 25.0% |
| !! | TCTGTTATTTACATGTGTTA+TGG | - | chr7_4:56311623-56311642 | Msa1164590:three_prime_UTR | 25.0% |
| !! | TCTTATGGTACATTTGAAAT+GGG | - | chr7_4:56312191-56312210 | Msa1164590:CDS | 25.0% |
| ! | TCCATGATTATGTCATTATA+CGG | + | chr7_4:56312324-56312343 | None:intergenic | 25.0% |
| ! | TCTTGATTCTTCTATTAAAC+AGG | - | chr7_4:56312353-56312372 | Msa1164590:CDS | 25.0% |
| ! | TTAAGAAATTGTGGTAAAGT+TGG | - | chr7_4:56310802-56310821 | Msa1164590:three_prime_UTR | 25.0% |
| ! | TAAGAAATTGTGGTAAAGTT+GGG | - | chr7_4:56310803-56310822 | Msa1164590:three_prime_UTR | 25.0% |
| !!! | TTCTTTTATTTCTCATGTGA+TGG | - | chr7_4:56311058-56311077 | Msa1164590:three_prime_UTR | 25.0% |
| !!! | AAAGGCATTGAAAGAATAAA+AGG | + | chr7_4:56311302-56311321 | None:intergenic | 25.0% |
| ! | AACATTATTCGTAGTACATA+AGG | + | chr7_4:56311523-56311542 | None:intergenic | 25.0% |
| !! | TCTGTTATTTACATGTGTTA+TGG | - | chr7_4:56311623-56311642 | Msa1164590:three_prime_UTR | 25.0% |
| !! | TCTTATGGTACATTTGAAAT+GGG | - | chr7_4:56312191-56312210 | Msa1164590:CDS | 25.0% |
| ! | TCCATGATTATGTCATTATA+CGG | + | chr7_4:56312324-56312343 | None:intergenic | 25.0% |
| ! | TCTTGATTCTTCTATTAAAC+AGG | - | chr7_4:56312353-56312372 | Msa1164590:CDS | 25.0% |
| GAGATTACAGACAAGAAAAA+AGG | - | chr7_4:56310604-56310623 | Msa1164590:three_prime_UTR | 30.0% | |
| GTTATTGAAGATGAGATTAC+CGG | - | chr7_4:56310736-56310755 | Msa1164590:three_prime_UTR | 30.0% | |
| ATTCGCGAAAAGAAAAAACA+AGG | + | chr7_4:56311032-56311051 | None:intergenic | 30.0% | |
| ! | ACGTTTTCTCAAATTATTGC+TGG | - | chr7_4:56311163-56311182 | Msa1164590:three_prime_UTR | 30.0% |
| AACTGCAAACAAACAACAAA+CGG | + | chr7_4:56311271-56311290 | None:intergenic | 30.0% | |
| ! | CCATTGATGGTAGTTAATAA+AGG | + | chr7_4:56311320-56311339 | None:intergenic | 30.0% |
| CCTTTATTAACTACCATCAA+TGG | - | chr7_4:56311317-56311336 | Msa1164590:three_prime_UTR | 30.0% | |
| ! | AAGACATCTTGAAGTACTTA+CGG | + | chr7_4:56311462-56311481 | None:intergenic | 30.0% |
| AGTACTTCAAGATGTCTTTA+AGG | - | chr7_4:56311464-56311483 | Msa1164590:three_prime_UTR | 30.0% | |
| GTCTTAAAAGCAGAAAAATG+AGG | - | chr7_4:56311761-56311780 | Msa1164590:intron | 30.0% | |
| ! | AAGTTGATTAACATAGGACA+AGG | - | chr7_4:56311827-56311846 | Msa1164590:intron | 30.0% |
| !! | AATGCATTAAGTATTGAGAC+CGG | - | chr7_4:56311867-56311886 | Msa1164590:intron | 30.0% |
| TCATGCCTATATAAAAACAG+AGG | - | chr7_4:56312006-56312025 | Msa1164590:intron | 30.0% | |
| !!! | TCCATCCTCTGTTTTTATAT+AGG | + | chr7_4:56312014-56312033 | None:intergenic | 30.0% |
| ATATAAAAACAGAGGATGGA+AGG | - | chr7_4:56312014-56312033 | Msa1164590:intron | 30.0% | |
| AATTTGCCTGTTCAATGATT+TGG | - | chr7_4:56312109-56312128 | Msa1164590:CDS | 30.0% | |
| ATTTGCCTGTTCAATGATTT+GGG | - | chr7_4:56312110-56312129 | Msa1164590:CDS | 30.0% | |
| ATTCTTTGTTACAGCTCTTA+TGG | - | chr7_4:56312176-56312195 | Msa1164590:CDS | 30.0% | |
| CTCTTATGGTACATTTGAAA+TGG | - | chr7_4:56312190-56312209 | Msa1164590:CDS | 30.0% | |
| ! | ATGCTCTTTGGAAATGAAAT+CGG | - | chr7_4:56312220-56312239 | Msa1164590:CDS | 30.0% |
| !! | GTTTACTAGATTGAGTTGAT+GGG | - | chr7_4:56312282-56312301 | Msa1164590:CDS | 30.0% |
| ACCGTATAATGACATAATCA+TGG | - | chr7_4:56312320-56312339 | Msa1164590:CDS | 30.0% | |
| ATTCTTCTATTAAACAGGTG+TGG | - | chr7_4:56312358-56312377 | Msa1164590:CDS | 30.0% | |
| GAGATTACAGACAAGAAAAA+AGG | - | chr7_4:56310604-56310623 | Msa1164590:three_prime_UTR | 30.0% | |
| GTTATTGAAGATGAGATTAC+CGG | - | chr7_4:56310736-56310755 | Msa1164590:three_prime_UTR | 30.0% | |
| ATTCGCGAAAAGAAAAAACA+AGG | + | chr7_4:56311032-56311051 | None:intergenic | 30.0% | |
| ! | ACGTTTTCTCAAATTATTGC+TGG | - | chr7_4:56311163-56311182 | Msa1164590:three_prime_UTR | 30.0% |
| AACTGCAAACAAACAACAAA+CGG | + | chr7_4:56311271-56311290 | None:intergenic | 30.0% | |
| ! | CCATTGATGGTAGTTAATAA+AGG | + | chr7_4:56311320-56311339 | None:intergenic | 30.0% |
| CCTTTATTAACTACCATCAA+TGG | - | chr7_4:56311317-56311336 | Msa1164590:three_prime_UTR | 30.0% | |
| ! | AAGACATCTTGAAGTACTTA+CGG | + | chr7_4:56311462-56311481 | None:intergenic | 30.0% |
| AGTACTTCAAGATGTCTTTA+AGG | - | chr7_4:56311464-56311483 | Msa1164590:three_prime_UTR | 30.0% | |
| GTCTTAAAAGCAGAAAAATG+AGG | - | chr7_4:56311761-56311780 | Msa1164590:intron | 30.0% | |
| ! | AAGTTGATTAACATAGGACA+AGG | - | chr7_4:56311827-56311846 | Msa1164590:intron | 30.0% |
| !! | AATGCATTAAGTATTGAGAC+CGG | - | chr7_4:56311867-56311886 | Msa1164590:intron | 30.0% |
| TCATGCCTATATAAAAACAG+AGG | - | chr7_4:56312006-56312025 | Msa1164590:intron | 30.0% | |
| !!! | TCCATCCTCTGTTTTTATAT+AGG | + | chr7_4:56312014-56312033 | None:intergenic | 30.0% |
| ATATAAAAACAGAGGATGGA+AGG | - | chr7_4:56312014-56312033 | Msa1164590:intron | 30.0% | |
| AATTTGCCTGTTCAATGATT+TGG | - | chr7_4:56312109-56312128 | Msa1164590:CDS | 30.0% | |
| ATTTGCCTGTTCAATGATTT+GGG | - | chr7_4:56312110-56312129 | Msa1164590:CDS | 30.0% | |
| ATTCTTTGTTACAGCTCTTA+TGG | - | chr7_4:56312176-56312195 | Msa1164590:CDS | 30.0% | |
| CTCTTATGGTACATTTGAAA+TGG | - | chr7_4:56312190-56312209 | Msa1164590:CDS | 30.0% | |
| ! | ATGCTCTTTGGAAATGAAAT+CGG | - | chr7_4:56312220-56312239 | Msa1164590:CDS | 30.0% |
| !! | GTTTACTAGATTGAGTTGAT+GGG | - | chr7_4:56312282-56312301 | Msa1164590:CDS | 30.0% |
| ACCGTATAATGACATAATCA+TGG | - | chr7_4:56312320-56312339 | Msa1164590:CDS | 30.0% | |
| ATTCTTCTATTAAACAGGTG+TGG | - | chr7_4:56312358-56312377 | Msa1164590:CDS | 30.0% | |
| GTCTGTAATCTCTAATCTTC+TGG | + | chr7_4:56310596-56310615 | None:intergenic | 35.0% | |
| TTGTGATTCAGTCTCTGATA+AGG | - | chr7_4:56310657-56310676 | Msa1164590:three_prime_UTR | 35.0% | |
| AGTCTCTGATAAGGAATTTG+AGG | - | chr7_4:56310666-56310685 | Msa1164590:three_prime_UTR | 35.0% | |
| TACCGGAAAGATTATTGCAA+CGG | - | chr7_4:56310753-56310772 | Msa1164590:three_prime_UTR | 35.0% | |
| GCATATAGAAGATGTTGTTG+TGG | - | chr7_4:56310825-56310844 | Msa1164590:three_prime_UTR | 35.0% | |
| ! | AAGGTGTTCTATGAGAAATG+TGG | - | chr7_4:56310958-56310977 | Msa1164590:three_prime_UTR | 35.0% |
| CTATGAGAAATGTGGTTTCA+AGG | - | chr7_4:56310966-56310985 | Msa1164590:three_prime_UTR | 35.0% | |
| TAAACTACATGTGTCATGTC+CGG | + | chr7_4:56311124-56311143 | None:intergenic | 35.0% | |
| GATAGTATCAATTGCTGAAG+AGG | + | chr7_4:56311239-56311258 | None:intergenic | 35.0% | |
| ! | GTTGTGCATAGTGTTCATTT+TGG | - | chr7_4:56311428-56311447 | Msa1164590:three_prime_UTR | 35.0% |
| ! | CTTGAAGTACTTACGGAAAT+AGG | + | chr7_4:56311455-56311474 | None:intergenic | 35.0% |
| GACTAAACAAGCACATGTTT+CGG | + | chr7_4:56311744-56311763 | None:intergenic | 35.0% | |
| ATCAAAAACTACAGCTGAAC+TGG | + | chr7_4:56311807-56311826 | None:intergenic | 35.0% | |
| ATAGGACAAGGTTGTCTTTA+TGG | - | chr7_4:56311839-56311858 | Msa1164590:intron | 35.0% | |
| TCAACTGCGACAATATTTGT+AGG | - | chr7_4:56311962-56311981 | Msa1164590:intron | 35.0% | |
| GCCTATATAAAAACAGAGGA+TGG | - | chr7_4:56312010-56312029 | Msa1164590:intron | 35.0% | |
| ! | TTCAATGATTTGGGTGCTTA+AGG | - | chr7_4:56312119-56312138 | Msa1164590:CDS | 35.0% |
| GAATTATGAGGACAAGCATA+TGG | - | chr7_4:56312141-56312160 | Msa1164590:CDS | 35.0% | |
| AGCTGTAACAAAGAATTTCG+AGG | + | chr7_4:56312172-56312191 | None:intergenic | 35.0% | |
| !! | TTCATTTCCAAAGAGCATCA+AGG | + | chr7_4:56312218-56312237 | None:intergenic | 35.0% |
| TCAACTCAATCTAGTAAACC+AGG | + | chr7_4:56312281-56312300 | None:intergenic | 35.0% | |
| !! | GGTTTACTAGATTGAGTTGA+TGG | - | chr7_4:56312281-56312300 | Msa1164590:CDS | 35.0% |
| TTCTATTAAACAGGTGTGGT+GGG | - | chr7_4:56312362-56312381 | Msa1164590:CDS | 35.0% | |
| GTCTGTAATCTCTAATCTTC+TGG | + | chr7_4:56310596-56310615 | None:intergenic | 35.0% | |
| TTGTGATTCAGTCTCTGATA+AGG | - | chr7_4:56310657-56310676 | Msa1164590:three_prime_UTR | 35.0% | |
| AGTCTCTGATAAGGAATTTG+AGG | - | chr7_4:56310666-56310685 | Msa1164590:three_prime_UTR | 35.0% | |
| TACCGGAAAGATTATTGCAA+CGG | - | chr7_4:56310753-56310772 | Msa1164590:three_prime_UTR | 35.0% | |
| GCATATAGAAGATGTTGTTG+TGG | - | chr7_4:56310825-56310844 | Msa1164590:three_prime_UTR | 35.0% | |
| ! | AAGGTGTTCTATGAGAAATG+TGG | - | chr7_4:56310958-56310977 | Msa1164590:three_prime_UTR | 35.0% |
| CTATGAGAAATGTGGTTTCA+AGG | - | chr7_4:56310966-56310985 | Msa1164590:three_prime_UTR | 35.0% | |
| TAAACTACATGTGTCATGTC+CGG | + | chr7_4:56311124-56311143 | None:intergenic | 35.0% | |
| GATAGTATCAATTGCTGAAG+AGG | + | chr7_4:56311239-56311258 | None:intergenic | 35.0% | |
| ! | GTTGTGCATAGTGTTCATTT+TGG | - | chr7_4:56311428-56311447 | Msa1164590:three_prime_UTR | 35.0% |
| ! | CTTGAAGTACTTACGGAAAT+AGG | + | chr7_4:56311455-56311474 | None:intergenic | 35.0% |
| GACTAAACAAGCACATGTTT+CGG | + | chr7_4:56311744-56311763 | None:intergenic | 35.0% | |
| ATCAAAAACTACAGCTGAAC+TGG | + | chr7_4:56311807-56311826 | None:intergenic | 35.0% | |
| ATAGGACAAGGTTGTCTTTA+TGG | - | chr7_4:56311839-56311858 | Msa1164590:intron | 35.0% | |
| TCAACTGCGACAATATTTGT+AGG | - | chr7_4:56311962-56311981 | Msa1164590:intron | 35.0% | |
| GCCTATATAAAAACAGAGGA+TGG | - | chr7_4:56312010-56312029 | Msa1164590:intron | 35.0% | |
| ! | TTCAATGATTTGGGTGCTTA+AGG | - | chr7_4:56312119-56312138 | Msa1164590:CDS | 35.0% |
| GAATTATGAGGACAAGCATA+TGG | - | chr7_4:56312141-56312160 | Msa1164590:CDS | 35.0% | |
| AGCTGTAACAAAGAATTTCG+AGG | + | chr7_4:56312172-56312191 | None:intergenic | 35.0% | |
| !! | TTCATTTCCAAAGAGCATCA+AGG | + | chr7_4:56312218-56312237 | None:intergenic | 35.0% |
| TCAACTCAATCTAGTAAACC+AGG | + | chr7_4:56312281-56312300 | None:intergenic | 35.0% | |
| !! | GGTTTACTAGATTGAGTTGA+TGG | - | chr7_4:56312281-56312300 | Msa1164590:CDS | 35.0% |
| TTCTATTAAACAGGTGTGGT+GGG | - | chr7_4:56312362-56312381 | Msa1164590:CDS | 35.0% | |
| ! | ATTTGAGGATCGATTTCGAG+AGG | - | chr7_4:56310681-56310700 | Msa1164590:three_prime_UTR | 40.0% |
| ! | TTTCGAGAGGTTGATTCACT+TGG | - | chr7_4:56310694-56310713 | Msa1164590:three_prime_UTR | 40.0% |
| ACCGGAAAGATTATTGCAAC+GGG | - | chr7_4:56310754-56310773 | Msa1164590:three_prime_UTR | 40.0% | |
| ! | TCGTTCTGTTGGGTGTTATA+AGG | - | chr7_4:56310909-56310928 | Msa1164590:three_prime_UTR | 40.0% |
| CAAGGAGAAAGAAGTTCAGA+TGG | - | chr7_4:56310984-56311003 | Msa1164590:three_prime_UTR | 40.0% | |
| ! | GGTTCTAGTCAGATTGAACA+TGG | - | chr7_4:56311079-56311098 | Msa1164590:three_prime_UTR | 40.0% |
| CAAACATCCACTACAATGGT+AGG | + | chr7_4:56311345-56311364 | None:intergenic | 40.0% | |
| CTTGCAAACATCCACTACAA+TGG | + | chr7_4:56311349-56311368 | None:intergenic | 40.0% | |
| ! | GTCATAGAACTCTAGAAAGC+AGG | + | chr7_4:56311377-56311396 | None:intergenic | 40.0% |
| ATGAACACTATGCACAACTC+TGG | + | chr7_4:56311426-56311445 | None:intergenic | 40.0% | |
| GTACATAAGGCGATGTATGA+TGG | + | chr7_4:56311510-56311529 | None:intergenic | 40.0% | |
| CTCACTGTTATCTGTACTCT+TGG | - | chr7_4:56311686-56311705 | Msa1164590:CDS | 40.0% | |
| AAAAACTACAGCTGAACTGG+TGG | + | chr7_4:56311804-56311823 | None:intergenic | 40.0% | |
| GATCAGAATTACAGCTGAAC+CGG | + | chr7_4:56311889-56311908 | None:intergenic | 40.0% | |
| CTGCGACAATATTTGTAGGA+CGG | - | chr7_4:56311966-56311985 | Msa1164590:intron | 40.0% | |
| GACAATATTTGTAGGACGGA+GGG | - | chr7_4:56311970-56311989 | Msa1164590:intron | 40.0% | |
| AAAAACAGAGGATGGAAGGA+TGG | - | chr7_4:56312018-56312037 | Msa1164590:intron | 40.0% | |
| GCATGAAAAGCAGTTCATAG+AGG | - | chr7_4:56312040-56312059 | Msa1164590:CDS | 40.0% | |
| AAGCACCCAAATCATTGAAC+AGG | + | chr7_4:56312118-56312137 | None:intergenic | 40.0% | |
| TGGGTGCTTAAGGAATTATG+AGG | - | chr7_4:56312129-56312148 | Msa1164590:CDS | 40.0% | |
| TGGAAATGAAATCGGTAGTG+TGG | - | chr7_4:56312228-56312247 | Msa1164590:CDS | 40.0% | |
| AATGAAATCGGTAGTGTGGT+AGG | - | chr7_4:56312232-56312251 | Msa1164590:CDS | 40.0% | |
| CTCAATCTAGTAAACCAGGA+AGG | + | chr7_4:56312277-56312296 | None:intergenic | 40.0% | |
| CTTCTATTAAACAGGTGTGG+TGG | - | chr7_4:56312361-56312380 | Msa1164590:CDS | 40.0% | |
| ! | ATTTGAGGATCGATTTCGAG+AGG | - | chr7_4:56310681-56310700 | Msa1164590:three_prime_UTR | 40.0% |
| ! | TTTCGAGAGGTTGATTCACT+TGG | - | chr7_4:56310694-56310713 | Msa1164590:three_prime_UTR | 40.0% |
| ACCGGAAAGATTATTGCAAC+GGG | - | chr7_4:56310754-56310773 | Msa1164590:three_prime_UTR | 40.0% | |
| ! | TCGTTCTGTTGGGTGTTATA+AGG | - | chr7_4:56310909-56310928 | Msa1164590:three_prime_UTR | 40.0% |
| CAAGGAGAAAGAAGTTCAGA+TGG | - | chr7_4:56310984-56311003 | Msa1164590:three_prime_UTR | 40.0% | |
| ! | GGTTCTAGTCAGATTGAACA+TGG | - | chr7_4:56311079-56311098 | Msa1164590:three_prime_UTR | 40.0% |
| CAAACATCCACTACAATGGT+AGG | + | chr7_4:56311345-56311364 | None:intergenic | 40.0% | |
| CTTGCAAACATCCACTACAA+TGG | + | chr7_4:56311349-56311368 | None:intergenic | 40.0% | |
| ! | GTCATAGAACTCTAGAAAGC+AGG | + | chr7_4:56311377-56311396 | None:intergenic | 40.0% |
| ATGAACACTATGCACAACTC+TGG | + | chr7_4:56311426-56311445 | None:intergenic | 40.0% | |
| GTACATAAGGCGATGTATGA+TGG | + | chr7_4:56311510-56311529 | None:intergenic | 40.0% | |
| CTCACTGTTATCTGTACTCT+TGG | - | chr7_4:56311686-56311705 | Msa1164590:CDS | 40.0% | |
| AAAAACTACAGCTGAACTGG+TGG | + | chr7_4:56311804-56311823 | None:intergenic | 40.0% | |
| GATCAGAATTACAGCTGAAC+CGG | + | chr7_4:56311889-56311908 | None:intergenic | 40.0% | |
| CTGCGACAATATTTGTAGGA+CGG | - | chr7_4:56311966-56311985 | Msa1164590:intron | 40.0% | |
| GACAATATTTGTAGGACGGA+GGG | - | chr7_4:56311970-56311989 | Msa1164590:intron | 40.0% | |
| AAAAACAGAGGATGGAAGGA+TGG | - | chr7_4:56312018-56312037 | Msa1164590:intron | 40.0% | |
| GCATGAAAAGCAGTTCATAG+AGG | - | chr7_4:56312040-56312059 | Msa1164590:CDS | 40.0% | |
| AAGCACCCAAATCATTGAAC+AGG | + | chr7_4:56312118-56312137 | None:intergenic | 40.0% | |
| TGGGTGCTTAAGGAATTATG+AGG | - | chr7_4:56312129-56312148 | Msa1164590:CDS | 40.0% | |
| TGGAAATGAAATCGGTAGTG+TGG | - | chr7_4:56312228-56312247 | Msa1164590:CDS | 40.0% | |
| AATGAAATCGGTAGTGTGGT+AGG | - | chr7_4:56312232-56312251 | Msa1164590:CDS | 40.0% | |
| CTCAATCTAGTAAACCAGGA+AGG | + | chr7_4:56312277-56312296 | None:intergenic | 40.0% | |
| CTTCTATTAAACAGGTGTGG+TGG | - | chr7_4:56312361-56312380 | Msa1164590:CDS | 40.0% | |
| CCCCGTTGCAATAATCTTTC+CGG | + | chr7_4:56310758-56310777 | None:intergenic | 45.0% | |
| CCGGAAAGATTATTGCAACG+GGG | - | chr7_4:56310755-56310774 | Msa1164590:three_prime_UTR | 45.0% | |
| TTGTGGATTCAAGTGCTCGT+GGG | - | chr7_4:56310842-56310861 | Msa1164590:three_prime_UTR | 45.0% | |
| AAGTGCTCGTGGGAAACAAT+TGG | - | chr7_4:56310852-56310871 | Msa1164590:three_prime_UTR | 45.0% | |
| AGTGCTCGTGGGAAACAATT+GGG | - | chr7_4:56310853-56310872 | Msa1164590:three_prime_UTR | 45.0% | |
| ! | CGATTGCAGTGTTGAGAACA+AGG | - | chr7_4:56310939-56310958 | Msa1164590:three_prime_UTR | 45.0% |
| GTCAGATTGAACATGGTGTC+TGG | - | chr7_4:56311086-56311105 | Msa1164590:three_prime_UTR | 45.0% | |
| TGTCTGGCAAATGTCAATGC+CGG | - | chr7_4:56311102-56311121 | Msa1164590:three_prime_UTR | 45.0% | |
| ACAATGGTAGGAGCCATTGA+TGG | + | chr7_4:56311333-56311352 | None:intergenic | 45.0% | |
| AATGGCTCCTACCATTGTAG+TGG | - | chr7_4:56311335-56311354 | Msa1164590:three_prime_UTR | 45.0% | |
| ! | AACTGGTGGCGTCAATATGT+GGG | + | chr7_4:56311790-56311809 | None:intergenic | 45.0% |
| CGACAATATTTGTAGGACGG+AGG | - | chr7_4:56311969-56311988 | Msa1164590:intron | 45.0% | |
| AATGGGACCTTGATGCTCTT+TGG | - | chr7_4:56312208-56312227 | Msa1164590:CDS | 45.0% | |
| !! | ATTAAACAGGTGTGGTGGGT+TGG | - | chr7_4:56312366-56312385 | Msa1164590:CDS | 45.0% |
| CAGGAAAGGCAGACAATACA+AGG | + | chr7_4:56312453-56312472 | None:intergenic | 45.0% | |
| CCCCGTTGCAATAATCTTTC+CGG | + | chr7_4:56310758-56310777 | None:intergenic | 45.0% | |
| CCGGAAAGATTATTGCAACG+GGG | - | chr7_4:56310755-56310774 | Msa1164590:three_prime_UTR | 45.0% | |
| TTGTGGATTCAAGTGCTCGT+GGG | - | chr7_4:56310842-56310861 | Msa1164590:three_prime_UTR | 45.0% | |
| AAGTGCTCGTGGGAAACAAT+TGG | - | chr7_4:56310852-56310871 | Msa1164590:three_prime_UTR | 45.0% | |
| AGTGCTCGTGGGAAACAATT+GGG | - | chr7_4:56310853-56310872 | Msa1164590:three_prime_UTR | 45.0% | |
| ! | CGATTGCAGTGTTGAGAACA+AGG | - | chr7_4:56310939-56310958 | Msa1164590:three_prime_UTR | 45.0% |
| GTCAGATTGAACATGGTGTC+TGG | - | chr7_4:56311086-56311105 | Msa1164590:three_prime_UTR | 45.0% | |
| TGTCTGGCAAATGTCAATGC+CGG | - | chr7_4:56311102-56311121 | Msa1164590:three_prime_UTR | 45.0% | |
| ACAATGGTAGGAGCCATTGA+TGG | + | chr7_4:56311333-56311352 | None:intergenic | 45.0% | |
| AATGGCTCCTACCATTGTAG+TGG | - | chr7_4:56311335-56311354 | Msa1164590:three_prime_UTR | 45.0% | |
| ! | AACTGGTGGCGTCAATATGT+GGG | + | chr7_4:56311790-56311809 | None:intergenic | 45.0% |
| CGACAATATTTGTAGGACGG+AGG | - | chr7_4:56311969-56311988 | Msa1164590:intron | 45.0% | |
| AATGGGACCTTGATGCTCTT+TGG | - | chr7_4:56312208-56312227 | Msa1164590:CDS | 45.0% | |
| !! | ATTAAACAGGTGTGGTGGGT+TGG | - | chr7_4:56312366-56312385 | Msa1164590:CDS | 45.0% |
| CAGGAAAGGCAGACAATACA+AGG | + | chr7_4:56312453-56312472 | None:intergenic | 45.0% | |
| GTTGTGGATTCAAGTGCTCG+TGG | - | chr7_4:56310841-56310860 | Msa1164590:three_prime_UTR | 50.0% | |
| GTGCTCGTGGGAAACAATTG+GGG | - | chr7_4:56310854-56310873 | Msa1164590:three_prime_UTR | 50.0% | |
| ACCGATCATGCTCGTTCTGT+TGG | - | chr7_4:56310898-56310917 | Msa1164590:three_prime_UTR | 50.0% | |
| CCCAACAGAACGAGCATGAT+CGG | + | chr7_4:56310902-56310921 | None:intergenic | 50.0% | |
| CCGATCATGCTCGTTCTGTT+GGG | - | chr7_4:56310899-56310918 | Msa1164590:three_prime_UTR | 50.0% | |
| GCTATTGTAGCCTGACCTCT+TGG | - | chr7_4:56311708-56311727 | Msa1164590:CDS | 50.0% | |
| TTGCACATAGCCAAGAGGTC+AGG | + | chr7_4:56311721-56311740 | None:intergenic | 50.0% | |
| TTCGGTTGCACATAGCCAAG+AGG | + | chr7_4:56311726-56311745 | None:intergenic | 50.0% | |
| ! | GAACTGGTGGCGTCAATATG+TGG | + | chr7_4:56311791-56311810 | None:intergenic | 50.0% |
| CAGCAGTACATGTTCCTTCC+TGG | - | chr7_4:56312260-56312279 | Msa1164590:CDS | 50.0% | |
| GTTGTGGATTCAAGTGCTCG+TGG | - | chr7_4:56310841-56310860 | Msa1164590:three_prime_UTR | 50.0% | |
| GTGCTCGTGGGAAACAATTG+GGG | - | chr7_4:56310854-56310873 | Msa1164590:three_prime_UTR | 50.0% | |
| ACCGATCATGCTCGTTCTGT+TGG | - | chr7_4:56310898-56310917 | Msa1164590:three_prime_UTR | 50.0% | |
| CCCAACAGAACGAGCATGAT+CGG | + | chr7_4:56310902-56310921 | None:intergenic | 50.0% | |
| CCGATCATGCTCGTTCTGTT+GGG | - | chr7_4:56310899-56310918 | Msa1164590:three_prime_UTR | 50.0% | |
| GCTATTGTAGCCTGACCTCT+TGG | - | chr7_4:56311708-56311727 | Msa1164590:CDS | 50.0% | |
| TTGCACATAGCCAAGAGGTC+AGG | + | chr7_4:56311721-56311740 | None:intergenic | 50.0% | |
| TTCGGTTGCACATAGCCAAG+AGG | + | chr7_4:56311726-56311745 | None:intergenic | 50.0% | |
| ! | GAACTGGTGGCGTCAATATG+TGG | + | chr7_4:56311791-56311810 | None:intergenic | 50.0% |
| CAGCAGTACATGTTCCTTCC+TGG | - | chr7_4:56312260-56312279 | Msa1164590:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56310562 | 56312473 | 56310562 | ID=Msa1164590;Name=Msa1164590 |
| chr7_4 | mRNA | 56310562 | 56312473 | 56310562 | ID=Msa1164590-mRNA-1;Parent=Msa1164590;Name=Msa1164590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|1|1|1|2|1088|181 |
| chr7_4 | exon | 56310562 | 56311746 | 56310562 | ID=Msa1164590-mRNA-1:exon:16815;Parent=Msa1164590-mRNA-1 |
| chr7_4 | exon | 56312025 | 56312473 | 56312025 | ID=Msa1164590-mRNA-1:exon:16814;Parent=Msa1164590-mRNA-1 |
| chr7_4 | CDS | 56312025 | 56312473 | 56312025 | ID=Msa1164590-mRNA-1:cds;Parent=Msa1164590-mRNA-1 |
| chr7_4 | CDS | 56311650 | 56311746 | 56311650 | ID=Msa1164590-mRNA-1:cds;Parent=Msa1164590-mRNA-1 |
| chr7_4 | three_prime_UTR | 56310562 | 56311649 | 56310562 | ID=Msa1164590-mRNA-1:three_prime_utr;Parent=Msa1164590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
