Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456910 | XP_013460157.1 | 98.447 | 322 | 4 | 1 | 1 | 321 | 1 | 322 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456910 | sp|Q8S9H7|DIV_ANTMA | 57.944 | 321 | 102 | 12 | 5 | 313 | 1 | 300 | 8.24e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456910 | A0A072UYJ1 | 98.447 | 322 | 4 | 1 | 1 | 321 | 1 | 322 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456910 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032320 | Msa0456910 | 0.814213 | 1.727227e-51 | -8.615850e-47 |
| Msa0040450 | Msa0456910 | 0.802265 | 6.090679e-49 | -8.615850e-47 |
| Msa0048000 | Msa0456910 | 0.820203 | 7.766975e-53 | -8.615850e-47 |
| Msa0050730 | Msa0456910 | 0.803849 | 2.864654e-49 | -8.615850e-47 |
| Msa0085360 | Msa0456910 | -0.800986 | 1.114273e-48 | -8.615850e-47 |
| Msa0114540 | Msa0456910 | -0.806533 | 7.854941e-50 | -8.615850e-47 |
| Msa0124340 | Msa0456910 | 0.800705 | 1.271345e-48 | -8.615850e-47 |
| Msa0129510 | Msa0456910 | 0.814584 | 1.430293e-51 | -8.615850e-47 |
| Msa0177700 | Msa0456910 | -0.805951 | 1.041880e-49 | -8.615850e-47 |
| Msa0191250 | Msa0456910 | 0.814037 | 1.889065e-51 | -8.615850e-47 |
| Msa0377530 | Msa0456910 | 0.827751 | 1.315825e-54 | -8.615850e-47 |
| Msa0377550 | Msa0456910 | 0.816927 | 4.295398e-52 | -8.615850e-47 |
| Msa0389340 | Msa0456910 | 0.803159 | 3.982062e-49 | -8.615850e-47 |
| Msa0412440 | Msa0456910 | 0.976926 | 9.063705e-143 | -8.615850e-47 |
| Msa0419640 | Msa0456910 | -0.817927 | 2.557875e-52 | -8.615850e-47 |
| Msa0419970 | Msa0456910 | 0.807685 | 4.479731e-50 | -8.615850e-47 |
| Msa0426810 | Msa0456910 | 0.812929 | 3.310820e-51 | -8.615850e-47 |
| Msa0429290 | Msa0456910 | 0.806436 | 8.234129e-50 | -8.615850e-47 |
| Msa0437150 | Msa0456910 | 0.810035 | 1.408179e-50 | -8.615850e-47 |
| Msa0456910 | Msa0464900 | 0.805143 | 1.538874e-49 | -8.615850e-47 |
| Msa0456910 | Msa0473240 | 0.805119 | 1.557095e-49 | -8.615850e-47 |
| Msa0456910 | Msa0475580 | 0.808486 | 3.024406e-50 | -8.615850e-47 |
| Msa0456910 | Msa0482190 | -0.800004 | 1.766469e-48 | -8.615850e-47 |
| Msa0456910 | Msa0484780 | 0.802819 | 4.681052e-49 | -8.615850e-47 |
| Msa0456910 | Msa0504240 | 0.866526 | 2.674015e-65 | -8.615850e-47 |
| Msa0456910 | Msa0506980 | 0.801967 | 7.013293e-49 | -8.615850e-47 |
| Msa0456910 | Msa0512870 | 0.815224 | 1.031338e-51 | -8.615850e-47 |
| Msa0456910 | Msa0517490 | 0.828480 | 8.781120e-55 | -8.615850e-47 |
| Msa0456910 | Msa0517840 | 0.806910 | 6.539237e-50 | -8.615850e-47 |
| Msa0456910 | Msa0519220 | 0.809473 | 1.859363e-50 | -8.615850e-47 |
| Msa0456910 | Msa0521540 | 0.806176 | 9.338644e-50 | -8.615850e-47 |
| Msa0456910 | Msa0534730 | 0.821604 | 3.695476e-53 | -8.615850e-47 |
| Msa0456910 | Msa0547400 | 0.809077 | 2.261833e-50 | -8.615850e-47 |
| Msa0456910 | Msa0567020 | 0.831093 | 2.029312e-55 | -8.615850e-47 |
| Msa0456910 | Msa0631200 | 0.815753 | 7.865449e-52 | -8.615850e-47 |
| Msa0456910 | Msa0649980 | 0.805944 | 1.045016e-49 | -8.615850e-47 |
| Msa0456910 | Msa0654010 | 0.803092 | 4.111238e-49 | -8.615850e-47 |
| Msa0456910 | Msa0658570 | 0.815466 | 9.111181e-52 | -8.615850e-47 |
| Msa0456910 | Msa0677080 | 0.806494 | 8.005481e-50 | -8.615850e-47 |
| Msa0456910 | Msa0693380 | 0.819490 | 1.130241e-52 | -8.615850e-47 |
| Msa0456910 | Msa0703490 | 0.816094 | 6.601023e-52 | -8.615850e-47 |
| Msa0456910 | Msa0711790 | 0.802501 | 5.444373e-49 | -8.615850e-47 |
| Msa0456910 | Msa0739120 | 0.803168 | 3.964180e-49 | -8.615850e-47 |
| Msa0456910 | Msa0743680 | 0.822661 | 2.102123e-53 | -8.615850e-47 |
| Msa0456910 | Msa0754720 | -0.809476 | 1.857047e-50 | -8.615850e-47 |
| Msa0456910 | Msa0756630 | -0.823263 | 1.522122e-53 | -8.615850e-47 |
| Msa0456910 | Msa0784380 | 0.839426 | 1.595749e-57 | -8.615850e-47 |
| Msa0456910 | Msa0784620 | 0.812647 | 3.815651e-51 | -8.615850e-47 |
| Msa0456910 | Msa0829620 | 0.815374 | 9.552776e-52 | -8.615850e-47 |
| Msa0456910 | Msa0830530 | 0.811529 | 6.690597e-51 | -8.615850e-47 |
| Msa0456910 | Msa0844240 | 0.815880 | 7.369468e-52 | -8.615850e-47 |
| Msa0456910 | Msa0863800 | 0.820389 | 7.040460e-53 | -8.615850e-47 |
| Msa0456910 | Msa0863930 | 0.800969 | 1.122967e-48 | -8.615850e-47 |
| Msa0456910 | Msa0867890 | 0.810984 | 8.783260e-51 | -8.615850e-47 |
| Msa0456910 | Msa0895790 | 0.809497 | 1.837640e-50 | -8.615850e-47 |
| Msa0456910 | Msa0908170 | 0.813373 | 2.645674e-51 | -8.615850e-47 |
| Msa0456910 | Msa0909000 | -0.801799 | 7.591380e-49 | -8.615850e-47 |
| Msa0456910 | Msa0930780 | 0.809991 | 1.438700e-50 | -8.615850e-47 |
| Msa0456910 | Msa1037650 | -0.822345 | 2.489684e-53 | -8.615850e-47 |
| Msa0456910 | Msa1040120 | 0.803868 | 2.838522e-49 | -8.615850e-47 |
| Msa0456910 | Msa1078710 | 0.822068 | 2.887221e-53 | -8.615850e-47 |
| Msa0456910 | Msa1085300 | 0.850058 | 2.170399e-60 | -8.615850e-47 |
| Msa0456910 | Msa1087510 | -0.827437 | 1.565683e-54 | -8.615850e-47 |
| Msa0456910 | Msa1127650 | 0.808278 | 3.350094e-50 | -8.615850e-47 |
| Msa0456910 | Msa1133710 | 0.818242 | 2.171508e-52 | -8.615850e-47 |
| Msa0456910 | Msa1211050 | -0.822644 | 2.121834e-53 | -8.615850e-47 |
| Msa0456910 | Msa1219810 | 0.801568 | 8.467984e-49 | -8.615850e-47 |
| Msa0456910 | Msa1228210 | 0.804441 | 2.157252e-49 | -8.615850e-47 |
| Msa0456910 | Msa1267060 | 0.821304 | 4.334847e-53 | -8.615850e-47 |
| Msa0456910 | Msa1308380 | 0.811536 | 6.664611e-51 | -8.615850e-47 |
| Msa0456910 | Msa1318240 | 0.801112 | 1.050078e-48 | -8.615850e-47 |
| Msa0456910 | Msa1362510 | 0.813767 | 2.166263e-51 | -8.615850e-47 |
| Msa0456910 | Msa1363890 | 0.806166 | 9.388197e-50 | -8.615850e-47 |
| Msa0456910 | Msa1376890 | 0.823496 | 1.342605e-53 | -8.615850e-47 |
| Msa0456910 | Msa1384350 | 0.803260 | 3.794894e-49 | -8.615850e-47 |
| Msa0456910 | Msa1396780 | 0.813780 | 2.152738e-51 | -8.615850e-47 |
| Msa0456910 | Msa1397050 | 0.810653 | 1.035766e-50 | -8.615850e-47 |
| Msa0456910 | Msa1398860 | 0.833692 | 4.607526e-56 | -8.615850e-47 |
| Msa0456910 | Msa1401530 | 0.823791 | 1.144849e-53 | -8.615850e-47 |
| Msa0456910 | Msa1404540 | 0.833643 | 4.741399e-56 | -8.615850e-47 |
| Msa0456910 | Msa1408760 | -0.843414 | 1.421778e-58 | -8.615850e-47 |
| Msa0456910 | Msa1431060 | 0.831858 | 1.315081e-55 | -8.615850e-47 |
| Msa0456910 | Msa1444250 | -0.803308 | 3.709526e-49 | -8.615850e-47 |
| Msa0456910 | Msa1448770 | 0.807283 | 5.451098e-50 | -8.615850e-47 |
| Msa0456910 | Msa1459180 | 0.819065 | 1.412519e-52 | -8.615850e-47 |
| Msa0239800 | Msa0456910 | 0.806086 | 9.757347e-50 | -8.615850e-47 |
| Msa0239940 | Msa0456910 | 0.808021 | 3.801158e-50 | -8.615850e-47 |
| Msa0260810 | Msa0456910 | 0.826581 | 2.508514e-54 | -8.615850e-47 |
| Msa0262930 | Msa0456910 | 0.806204 | 9.215787e-50 | -8.615850e-47 |
| Msa0268090 | Msa0456910 | 0.810242 | 1.270715e-50 | -8.615850e-47 |
| Msa0292120 | Msa0456910 | 0.802421 | 5.655914e-49 | -8.615850e-47 |
| Msa0292170 | Msa0456910 | 0.800581 | 1.347821e-48 | -8.615850e-47 |
| Msa0308220 | Msa0456910 | 0.802583 | 5.237358e-49 | -8.615850e-47 |
| Msa0311860 | Msa0456910 | 0.813918 | 2.006461e-51 | -8.615850e-47 |
| Msa0317510 | Msa0456910 | 0.808974 | 2.379498e-50 | -8.615850e-47 |
| Msa0320100 | Msa0456910 | 0.803105 | 4.085012e-49 | -8.615850e-47 |
| Msa0327410 | Msa0456910 | 0.812738 | 3.645550e-51 | -8.615850e-47 |
| Msa0335040 | Msa0456910 | 0.829746 | 4.331656e-55 | -8.615850e-47 |
| Msa0362780 | Msa0456910 | 0.818153 | 2.273729e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456910 | MtrunA17_Chr3g0104071 | 98.447 | 322 | 4 | 1 | 1 | 321 | 1 | 322 | 0.0 | 664 |
| Msa0456910 | MtrunA17_Chr5g0429521 | 67.073 | 328 | 80 | 8 | 1 | 321 | 1 | 307 | 1.09e-150 | 425 |
| Msa0456910 | MtrunA17_Chr7g0241761 | 53.870 | 323 | 115 | 11 | 5 | 315 | 11 | 311 | 1.03e-103 | 306 |
| Msa0456910 | MtrunA17_Chr5g0436501 | 65.306 | 196 | 55 | 4 | 27 | 220 | 16 | 200 | 1.22e-82 | 251 |
| Msa0456910 | MtrunA17_Chr1g0162081 | 48.744 | 199 | 82 | 2 | 35 | 220 | 4 | 195 | 9.62e-61 | 196 |
| Msa0456910 | MtrunA17_Chr1g0210471 | 45.122 | 246 | 110 | 7 | 41 | 284 | 22 | 244 | 1.37e-58 | 188 |
| Msa0456910 | MtrunA17_Chr4g0062741 | 47.368 | 209 | 74 | 5 | 43 | 220 | 8 | 211 | 1.58e-52 | 175 |
| Msa0456910 | MtrunA17_Chr8g0365011 | 39.487 | 195 | 84 | 4 | 40 | 220 | 5 | 179 | 3.67e-37 | 134 |
| Msa0456910 | MtrunA17_Chr2g0331031 | 48.322 | 149 | 59 | 5 | 142 | 273 | 104 | 251 | 5.83e-33 | 124 |
| Msa0456910 | MtrunA17_Chr4g0055931 | 60.000 | 100 | 38 | 1 | 121 | 220 | 71 | 168 | 5.37e-32 | 121 |
| Msa0456910 | MtrunA17_Chr6g0488471 | 73.611 | 72 | 19 | 0 | 141 | 212 | 91 | 162 | 3.85e-31 | 118 |
| Msa0456910 | MtrunA17_Chr8g0389241 | 71.233 | 73 | 20 | 1 | 139 | 211 | 97 | 168 | 2.59e-30 | 116 |
| Msa0456910 | MtrunA17_Chr5g0415191 | 68.966 | 87 | 25 | 1 | 134 | 220 | 91 | 175 | 3.93e-30 | 116 |
| Msa0456910 | MtrunA17_Chr4g0059701 | 61.702 | 94 | 32 | 1 | 135 | 228 | 72 | 161 | 1.39e-28 | 111 |
| Msa0456910 | MtrunA17_Chr3g0092621 | 53.846 | 91 | 39 | 1 | 147 | 237 | 84 | 171 | 3.37e-25 | 99.8 |
| Msa0456910 | MtrunA17_Chr5g0440731 | 58.750 | 80 | 29 | 2 | 139 | 215 | 97 | 175 | 3.30e-24 | 100 |
| Msa0456910 | MtrunA17_Chr8g0364741 | 38.060 | 134 | 71 | 2 | 35 | 164 | 2 | 127 | 1.31e-23 | 94.0 |
| Msa0456910 | MtrunA17_Chr5g0440741 | 65.714 | 70 | 20 | 2 | 149 | 215 | 102 | 170 | 1.45e-23 | 98.2 |
| Msa0456910 | MtrunA17_Chr3g0135671 | 58.025 | 81 | 27 | 2 | 144 | 217 | 88 | 168 | 1.50e-23 | 96.7 |
| Msa0456910 | MtrunA17_Chr5g0432921 | 36.207 | 174 | 88 | 6 | 35 | 203 | 13 | 168 | 7.60e-23 | 94.7 |
| Msa0456910 | MtrunA17_Chr5g0409841 | 61.333 | 75 | 26 | 2 | 143 | 215 | 88 | 161 | 1.38e-22 | 94.4 |
| Msa0456910 | MtrunA17_Chr5g0432941 | 35.676 | 185 | 95 | 6 | 20 | 203 | 7 | 168 | 1.39e-22 | 94.0 |
| Msa0456910 | MtrunA17_Chr6g0452791 | 77.083 | 48 | 11 | 0 | 147 | 194 | 80 | 127 | 2.18e-20 | 86.7 |
| Msa0456910 | MtrunA17_Chr5g0409831 | 60.526 | 76 | 27 | 1 | 143 | 215 | 73 | 148 | 2.18e-20 | 88.2 |
| Msa0456910 | MtrunA17_Chr5g0404101 | 50.000 | 68 | 34 | 0 | 38 | 105 | 14 | 81 | 1.12e-19 | 82.4 |
| Msa0456910 | MtrunA17_Chr3g0144631 | 57.576 | 66 | 28 | 0 | 43 | 108 | 16 | 81 | 1.26e-19 | 81.6 |
| Msa0456910 | MtrunA17_Chr1g0155181 | 52.113 | 71 | 34 | 0 | 40 | 110 | 4 | 74 | 1.43e-19 | 82.0 |
| Msa0456910 | MtrunA17_Chr8g0373111 | 54.412 | 68 | 30 | 1 | 40 | 107 | 2 | 68 | 8.83e-19 | 79.3 |
| Msa0456910 | MtrunA17_Chr8g0373121 | 54.412 | 68 | 30 | 1 | 40 | 107 | 2 | 68 | 8.83e-19 | 79.3 |
| Msa0456910 | MtrunA17_Chr8g0373131 | 54.412 | 68 | 30 | 1 | 40 | 107 | 2 | 68 | 8.97e-19 | 79.3 |
| Msa0456910 | MtrunA17_Chr8g0364731 | 61.194 | 67 | 24 | 1 | 156 | 220 | 10 | 76 | 1.07e-18 | 82.4 |
| Msa0456910 | MtrunA17_Chr3g0141601 | 53.731 | 67 | 31 | 0 | 40 | 106 | 4 | 70 | 1.15e-17 | 77.0 |
| Msa0456910 | MtrunA17_Chr6g0449111 | 47.222 | 72 | 38 | 0 | 40 | 111 | 7 | 78 | 3.38e-16 | 72.4 |
| Msa0456910 | MtrunA17_Chr5g0404301 | 55.738 | 61 | 26 | 1 | 43 | 103 | 4 | 63 | 2.15e-15 | 69.7 |
| Msa0456910 | MtrunA17_Chr8g0373101 | 50.000 | 68 | 33 | 1 | 43 | 110 | 5 | 71 | 2.78e-15 | 69.7 |
| Msa0456910 | MtrunA17_Chr3g0081631 | 50.704 | 71 | 34 | 1 | 36 | 105 | 3 | 73 | 1.06e-14 | 68.6 |
| Msa0456910 | MtrunA17_Chr3g0113121 | 50.667 | 75 | 30 | 1 | 149 | 216 | 97 | 171 | 3.09e-14 | 70.9 |
| Msa0456910 | MtrunA17_Chr7g0255841 | 55.932 | 59 | 26 | 0 | 47 | 105 | 16 | 74 | 6.33e-14 | 66.6 |
| Msa0456910 | MtrunA17_Chr1g0192061 | 52.113 | 71 | 29 | 2 | 149 | 215 | 63 | 132 | 1.92e-13 | 67.8 |
| Msa0456910 | MtrunA17_Chr8g0370121 | 43.056 | 72 | 36 | 2 | 144 | 211 | 97 | 167 | 1.10e-11 | 63.9 |
| Msa0456910 | MtrunA17_Chr3g0141641 | 43.284 | 67 | 38 | 0 | 43 | 109 | 3 | 69 | 1.86e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456910 | AT5G58900.1 | 69.849 | 199 | 52 | 3 | 27 | 218 | 15 | 212 | 2.83e-97 | 289 |
| Msa0456910 | AT2G38090.1 | 61.778 | 225 | 54 | 5 | 5 | 216 | 5 | 210 | 4.68e-95 | 284 |
| Msa0456910 | AT3G11280.2 | 54.812 | 239 | 84 | 5 | 43 | 269 | 33 | 259 | 1.40e-79 | 243 |
| Msa0456910 | AT3G11280.1 | 54.812 | 239 | 84 | 5 | 43 | 269 | 33 | 259 | 1.40e-79 | 243 |
| Msa0456910 | AT5G05790.2 | 64.398 | 191 | 60 | 4 | 39 | 227 | 27 | 211 | 2.31e-79 | 243 |
| Msa0456910 | AT5G05790.1 | 64.398 | 191 | 60 | 4 | 39 | 227 | 27 | 211 | 2.31e-79 | 243 |
| Msa0456910 | AT5G01200.1 | 58.738 | 206 | 60 | 7 | 27 | 216 | 19 | 215 | 3.84e-72 | 224 |
| Msa0456910 | AT5G08520.1 | 50.000 | 194 | 79 | 3 | 37 | 220 | 6 | 191 | 1.87e-57 | 187 |
| Msa0456910 | AT1G49010.1 | 47.449 | 196 | 79 | 3 | 43 | 215 | 8 | 202 | 4.40e-51 | 172 |
| Msa0456910 | AT5G04760.1 | 48.876 | 178 | 80 | 3 | 40 | 217 | 3 | 169 | 6.52e-50 | 166 |
| Msa0456910 | AT5G23650.1 | 37.945 | 253 | 122 | 7 | 37 | 278 | 7 | 235 | 1.73e-41 | 147 |
| Msa0456910 | AT5G47390.1 | 63.529 | 85 | 31 | 0 | 135 | 219 | 84 | 168 | 2.45e-31 | 121 |
| Msa0456910 | AT3G10580.2 | 36.323 | 223 | 108 | 9 | 43 | 253 | 8 | 208 | 1.17e-30 | 116 |
| Msa0456910 | AT3G10580.1 | 36.323 | 223 | 108 | 9 | 43 | 253 | 8 | 208 | 1.39e-30 | 117 |
| Msa0456910 | AT4G09450.1 | 40.351 | 171 | 82 | 3 | 42 | 212 | 6 | 156 | 1.49e-29 | 112 |
| Msa0456910 | AT5G61620.1 | 55.140 | 107 | 44 | 1 | 117 | 223 | 82 | 184 | 2.86e-29 | 114 |
| Msa0456910 | AT5G56840.1 | 57.609 | 92 | 36 | 2 | 133 | 223 | 79 | 168 | 1.11e-27 | 108 |
| Msa0456910 | AT3G16350.1 | 66.667 | 87 | 27 | 1 | 142 | 228 | 132 | 216 | 2.16e-27 | 110 |
| Msa0456910 | AT1G70000.1 | 68.354 | 79 | 23 | 1 | 134 | 212 | 87 | 163 | 3.80e-27 | 107 |
| Msa0456910 | AT1G70000.2 | 68.354 | 79 | 23 | 1 | 134 | 212 | 87 | 163 | 3.80e-27 | 107 |
| Msa0456910 | AT1G74840.2 | 57.692 | 104 | 42 | 1 | 142 | 243 | 91 | 194 | 6.31e-26 | 103 |
| Msa0456910 | AT1G74840.1 | 57.692 | 104 | 42 | 1 | 142 | 243 | 91 | 194 | 9.92e-26 | 103 |
| Msa0456910 | AT1G19000.2 | 62.791 | 86 | 31 | 1 | 143 | 227 | 98 | 183 | 2.43e-25 | 103 |
| Msa0456910 | AT1G19000.1 | 62.791 | 86 | 31 | 1 | 143 | 227 | 98 | 183 | 2.43e-25 | 103 |
| Msa0456910 | AT1G75250.2 | 53.846 | 78 | 36 | 0 | 33 | 110 | 2 | 79 | 3.22e-21 | 87.0 |
| Msa0456910 | AT1G75250.1 | 53.846 | 78 | 36 | 0 | 33 | 110 | 2 | 79 | 4.64e-21 | 87.4 |
| Msa0456910 | AT3G10590.1 | 37.017 | 181 | 97 | 7 | 40 | 212 | 4 | 175 | 6.43e-20 | 86.7 |
| Msa0456910 | AT2G21650.1 | 54.545 | 66 | 30 | 0 | 43 | 108 | 14 | 79 | 1.90e-17 | 77.0 |
| Msa0456910 | AT4G39250.1 | 47.059 | 68 | 36 | 0 | 43 | 110 | 14 | 81 | 8.12e-16 | 72.4 |
| Msa0456910 | AT1G19510.1 | 55.738 | 61 | 27 | 0 | 47 | 107 | 16 | 76 | 1.32e-15 | 72.0 |
| Msa0456910 | AT2G18328.1 | 51.613 | 62 | 30 | 0 | 47 | 108 | 15 | 76 | 3.28e-12 | 61.6 |
| Msa0456910 | AT4G36570.1 | 61.364 | 44 | 17 | 0 | 43 | 86 | 12 | 55 | 8.30e-11 | 57.4 |
Find 91 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGAGTCTTCTTATTT+TGG | 0.078101 | 3_3:+51222257 | Msa0456910:CDS |
| TTTCACCTTTCATAGGTTTA+AGG | 0.140387 | 3_3:-51222565 | None:intergenic |
| ATTCAAGACTATTACCTTAT+TGG | 0.153260 | 3_3:-51220525 | None:intergenic |
| TATTGAGTTATTTATTATTA+TGG | 0.169866 | 3_3:+51222363 | Msa0456910:three_prime_UTR |
| TTAGTTAGTTATTGCCTTCT+TGG | 0.174768 | 3_3:+51222491 | Msa0456910:three_prime_UTR |
| TCTTTCTGCTATTTCCAAAT+TGG | 0.206893 | 3_3:+51220255 | Msa0456910:five_prime_UTR |
| ATTTGACAGGTTGTTTCTAT+TGG | 0.217886 | 3_3:+51221833 | Msa0456910:intron |
| TTGAATGTGAAAACCCAATT+TGG | 0.228567 | 3_3:-51220269 | None:intergenic |
| TCTTGCACAAGTTGGTTTCT+AGG | 0.236929 | 3_3:+51220488 | Msa0456910:five_prime_UTR |
| GGAGTTAATAATAACTCTTA+TGG | 0.241432 | 3_3:+51222197 | Msa0456910:CDS |
| GGTTTCTAGGGTTATCTTAT+TGG | 0.255506 | 3_3:+51220501 | Msa0456910:five_prime_UTR |
| TATTTCATCAGACAACTTTC+AGG | 0.257079 | 3_3:+51221951 | Msa0456910:CDS |
| CTTGAATATCAATATCAATT+TGG | 0.270388 | 3_3:+51220541 | Msa0456910:five_prime_UTR |
| GGAAAATCAATTAGAAATAA+AGG | 0.272315 | 3_3:-51220322 | None:intergenic |
| TTAGATTGGGTGAATTCTTC+TGG | 0.292652 | 3_3:+51221205 | Msa0456910:CDS |
| AAACCAATTGTTGGTATAGT+TGG | 0.296807 | 3_3:-51220930 | None:intergenic |
| TTCACCCAATCTAAGGTAAA+AGG | 0.308169 | 3_3:-51221196 | None:intergenic |
| CTTTCTGCTATTTCCAAATT+GGG | 0.309736 | 3_3:+51220256 | Msa0456910:five_prime_UTR |
| GCTGGTTTGGTTCCAATTCC+TGG | 0.315843 | 3_3:+51221154 | Msa0456910:CDS |
| GGTGCATGAGGGTGAGAATT+TGG | 0.327156 | 3_3:-51220893 | None:intergenic |
| TTGCAGCTTTCACCTTTCAT+AGG | 0.331595 | 3_3:-51222572 | None:intergenic |
| TTTGACAGGTTGTTTCTATT+GGG | 0.333131 | 3_3:+51221834 | Msa0456910:intron |
| CCTTTCTTCCTTTCCTGATC+AGG | 0.333627 | 3_3:-51221280 | None:intergenic |
| CTCTTGGTTTCTTCTGAAGT+TGG | 0.347825 | 3_3:-51222047 | None:intergenic |
| ACTGGAAAGAGAGGCTCTTC+TGG | 0.351976 | 3_3:+51221250 | Msa0456910:CDS |
| GTTATCTTATTGGACCAATA+AGG | 0.353998 | 3_3:+51220511 | Msa0456910:five_prime_UTR |
| ATCTTACTTGTGTTCTTCTT+CGG | 0.354438 | 3_3:-51221314 | None:intergenic |
| CAACTTATGCATAGCCTAAA+CGG | 0.360566 | 3_3:-51220344 | None:intergenic |
| GCATTAACAGGAGCACAAAA+TGG | 0.365638 | 3_3:+51220972 | Msa0456910:CDS |
| TGTGGTAAATTCTCCACCTT+TGG | 0.367052 | 3_3:+51220716 | Msa0456910:five_prime_UTR |
| AGAAGAATTCACCCAATCTA+AGG | 0.374549 | 3_3:-51221203 | None:intergenic |
| ACATCAACAACACTCTTTCC+AGG | 0.376605 | 3_3:-51221085 | None:intergenic |
| TACTTGTTCATAATCATGTT+TGG | 0.382661 | 3_3:-51222080 | None:intergenic |
| TGCTCTTGCAGTTTATGATA+AGG | 0.387222 | 3_3:+51221024 | Msa0456910:CDS |
| ATTCCAACTATACCAACAAT+TGG | 0.389716 | 3_3:+51220927 | Msa0456910:CDS |
| ATTGTAGCAATAGCATTAAC+AGG | 0.398247 | 3_3:+51220960 | Msa0456910:CDS |
| GATGAATCAGTATAAGGAAT+TGG | 0.401455 | 3_3:+51221108 | Msa0456910:CDS |
| GTAGTACTATAACCAGGAAT+TGG | 0.407318 | 3_3:-51221166 | None:intergenic |
| GTTGTTGAGAAGATTGCATT+TGG | 0.408588 | 3_3:-51222304 | None:intergenic |
| CAATATATTTACATAGAACT+TGG | 0.415544 | 3_3:-51222452 | None:intergenic |
| GTTTGGTGAAGTTGATCTCT+TGG | 0.418126 | 3_3:-51222063 | None:intergenic |
| CTTGCACAAGTTGGTTTCTA+GGG | 0.426235 | 3_3:+51220489 | Msa0456910:five_prime_UTR |
| TCAAACAATTTGTTCTCTGC+AGG | 0.426400 | 3_3:-51220998 | None:intergenic |
| GTGAATTCTTCTGGTTATGA+TGG | 0.427738 | 3_3:+51221214 | Msa0456910:CDS |
| TGCATGATGTTGTTGGTGAT+TGG | 0.429791 | 3_3:+51222337 | Msa0456910:exon |
| TTGTGTTCTTCTTCGGTCCA+TGG | 0.429989 | 3_3:-51221307 | None:intergenic |
| GATGTTTGTAATATAGAAGC+TGG | 0.431912 | 3_3:+51221136 | Msa0456910:CDS |
| AAAAGTATGGAAAAGGTGAT+TGG | 0.434556 | 3_3:+51221862 | Msa0456910:CDS |
| GAAAATCAATTAGAAATAAA+GGG | 0.438068 | 3_3:-51220321 | None:intergenic |
| TATGTAACTTCTGATATTGA+AGG | 0.439967 | 3_3:+51222606 | Msa0456910:three_prime_UTR |
| TTGTAATATAGAAGCTGGTT+TGG | 0.450084 | 3_3:+51221141 | Msa0456910:CDS |
| TTTATAGATCTTGCACAAGT+TGG | 0.451750 | 3_3:+51220480 | Msa0456910:five_prime_UTR |
| GAGTTATTATTAACTCCATA+AGG | 0.453193 | 3_3:-51222191 | None:intergenic |
| TGATGTGATGAATCAGTATA+AGG | 0.454237 | 3_3:+51221102 | Msa0456910:CDS |
| AACTTATGCATAGCCTAAAC+GGG | 0.468413 | 3_3:-51220343 | None:intergenic |
| GAAAGACACTGAATTTATGA+AGG | 0.477154 | 3_3:-51220238 | None:intergenic |
| TTCTGGTAGATCTCCTGATC+AGG | 0.477520 | 3_3:+51221267 | Msa0456910:CDS |
| CAAGGAACTTTGTGATCACT+AGG | 0.491493 | 3_3:+51221895 | Msa0456910:CDS |
| ATTCACATGCATGATGTTGT+TGG | 0.521276 | 3_3:+51222330 | Msa0456910:exon |
| TTGAATGCTGTCATAGTAGC+TGG | 0.523867 | 3_3:-51222140 | None:intergenic |
| TATGAACTTGATGATAGCAT+TGG | 0.526347 | 3_3:+51222516 | Msa0456910:three_prime_UTR |
| AGAGGAATTACTGGAAAGAG+AGG | 0.531317 | 3_3:+51221241 | Msa0456910:CDS |
| ATTTATCTTTCATATTGTTG+TGG | 0.535933 | 3_3:+51220698 | Msa0456910:five_prime_UTR |
| GCTACCTTATGCCACCGATC+CGG | 0.536074 | 3_3:-51221052 | None:intergenic |
| CCTGATCAGGAAAGGAAGAA+AGG | 0.540469 | 3_3:+51221280 | Msa0456910:CDS |
| AAGGTAGCTGCAATGATCCC+TGG | 0.550717 | 3_3:+51221067 | Msa0456910:CDS |
| GCATGGCTAGCTACTTGTGT+TGG | 0.551417 | 3_3:-51221921 | None:intergenic |
| ATGAAAACTTGTTCATGTGA+TGG | 0.562419 | 3_3:-51222164 | None:intergenic |
| AACAACCTTAAACCTATGAA+AGG | 0.563921 | 3_3:+51222560 | Msa0456910:three_prime_UTR |
| TACGCCGGATCGGTGGCATA+AGG | 0.566659 | 3_3:+51221048 | Msa0456910:CDS |
| ATCAAGTTCATATACCAAGA+AGG | 0.569120 | 3_3:-51222505 | None:intergenic |
| CTCAGAAGTGGTGTTAGCAG+TGG | 0.576504 | 3_3:-51222105 | None:intergenic |
| TGATGAAATATTTCTGAGCA+TGG | 0.587728 | 3_3:-51221938 | None:intergenic |
| ATGATAAGGATACGCCGGAT+CGG | 0.588112 | 3_3:+51221038 | Msa0456910:CDS |
| CTGAAAATGCATCTCAGAAG+TGG | 0.589832 | 3_3:-51222117 | None:intergenic |
| AAATAAGAAGACTCATGAAG+AGG | 0.592849 | 3_3:-51222254 | None:intergenic |
| AAAGACACTGAATTTATGAA+GGG | 0.594445 | 3_3:-51220237 | None:intergenic |
| CATCAACAACACTCTTTCCA+GGG | 0.594776 | 3_3:-51221084 | None:intergenic |
| TATATGATATTTCAAAACAG+AGG | 0.595770 | 3_3:-51220759 | None:intergenic |
| GTGATTGGAGAAACATATCA+AGG | 0.596845 | 3_3:+51221877 | Msa0456910:CDS |
| GTAGATCTCCTGATCAGGAA+AGG | 0.600023 | 3_3:+51221272 | Msa0456910:CDS |
| TTCATCAGACAACTTTCAGG+AGG | 0.604647 | 3_3:+51221954 | Msa0456910:CDS |
| AAAGGAAGAAAGGTGTGCCA+TGG | 0.605391 | 3_3:+51221290 | Msa0456910:CDS |
| ATAAGGATACGCCGGATCGG+TGG | 0.605758 | 3_3:+51221041 | Msa0456910:CDS |
| AGATAAATGAAGAGAACCAA+AGG | 0.617158 | 3_3:-51220732 | None:intergenic |
| TGGACCTCAGACACAAAACA+TGG | 0.622490 | 3_3:+51222277 | Msa0456910:CDS |
| TATGAAAGGTGAAAGCTGCA+AGG | 0.634603 | 3_3:+51222574 | Msa0456910:three_prime_UTR |
| TAAATGAAGAGAACCAAAGG+TGG | 0.648472 | 3_3:-51220729 | None:intergenic |
| AGTTTATGATAAGGATACGC+CGG | 0.649185 | 3_3:+51221033 | Msa0456910:CDS |
| GAAGCAGTAGTACTATAACC+AGG | 0.680914 | 3_3:-51221172 | None:intergenic |
| TTTGAACAAATGGTGCATGA+GGG | 0.682304 | 3_3:-51220904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAGTATATAAGA+AGG | + | chr3_3:51220440-51220459 | Msa0456910:five_prime_UTR | 10.0% |
| !! | TATTGAGTTATTTATTATTA+TGG | + | chr3_3:51222363-51222382 | Msa0456910:three_prime_UTR | 10.0% |
| !! | GAAAATCAATTAGAAATAAA+GGG | - | chr3_3:51220324-51220343 | None:intergenic | 15.0% |
| !!! | TTTAGTTAAATTTTTCAACT+TGG | + | chr3_3:51220834-51220853 | Msa0456910:five_prime_UTR | 15.0% |
| !!! | ATATTTATTTAAGTTGTTGA+AGG | + | chr3_3:51221779-51221798 | Msa0456910:intron | 15.0% |
| !!! | TATTTATTTAAGTTGTTGAA+GGG | + | chr3_3:51221780-51221799 | Msa0456910:intron | 15.0% |
| !! | AATAAAGGGAAAAAACAAAA+GGG | - | chr3_3:51220310-51220329 | None:intergenic | 20.0% |
| !! | AAATAAAGGGAAAAAACAAA+AGG | - | chr3_3:51220311-51220330 | None:intergenic | 20.0% |
| !! | GGAAAATCAATTAGAAATAA+AGG | - | chr3_3:51220325-51220344 | None:intergenic | 20.0% |
| !! | CTTGAATATCAATATCAATT+TGG | + | chr3_3:51220541-51220560 | Msa0456910:five_prime_UTR | 20.0% |
| !!! | CAATAAGCATTTTTTTCAAA+AGG | - | chr3_3:51220672-51220691 | None:intergenic | 20.0% |
| !! | ATTTATCTTTCATATTGTTG+TGG | + | chr3_3:51220698-51220717 | Msa0456910:five_prime_UTR | 20.0% |
| !! | TATATGATATTTCAAAACAG+AGG | - | chr3_3:51220762-51220781 | None:intergenic | 20.0% |
| !! | CATAAACTTTAAATTACATC+CGG | - | chr3_3:51221609-51221628 | None:intergenic | 20.0% |
| !! | GATTATGAAAATAATTTGAC+AGG | + | chr3_3:51221820-51221839 | Msa0456910:intron | 20.0% |
| !! | CAATATATTTACATAGAACT+TGG | - | chr3_3:51222455-51222474 | None:intergenic | 20.0% |
| ! | AAAGACACTGAATTTATGAA+GGG | - | chr3_3:51220240-51220259 | None:intergenic | 25.0% |
| ! | ATTCAAGACTATTACCTTAT+TGG | - | chr3_3:51220528-51220547 | None:intergenic | 25.0% |
| !! | TAGTTGGAATTTTGAACAAA+TGG | - | chr3_3:51220917-51220936 | None:intergenic | 25.0% |
| !! | TATGTGAAGATTTTACTGTT+TGG | + | chr3_3:51221406-51221425 | Msa0456910:intron | 25.0% |
| !! | GATTTTACTGTTTGGTTATT+TGG | + | chr3_3:51221414-51221433 | Msa0456910:intron | 25.0% |
| ! | TAAAGTTTATGTATGAACCT+AGG | + | chr3_3:51221618-51221637 | Msa0456910:intron | 25.0% |
| ! | ATATGTAGTTATTGAGAGTT+AGG | + | chr3_3:51221668-51221687 | Msa0456910:intron | 25.0% |
| ! | TACTTGTTCATAATCATGTT+TGG | - | chr3_3:51222083-51222102 | None:intergenic | 25.0% |
| ! | GAGTTATTATTAACTCCATA+AGG | - | chr3_3:51222194-51222213 | None:intergenic | 25.0% |
| ! | GGAGTTAATAATAACTCTTA+TGG | + | chr3_3:51222197-51222216 | Msa0456910:CDS | 25.0% |
| !! | TAGAACAAGTATCTTTTGTT+TGG | + | chr3_3:51222387-51222406 | Msa0456910:three_prime_UTR | 25.0% |
| ! | TATGTAACTTCTGATATTGA+AGG | + | chr3_3:51222606-51222625 | Msa0456910:three_prime_UTR | 25.0% |
| GAAAGACACTGAATTTATGA+AGG | - | chr3_3:51220241-51220260 | None:intergenic | 30.0% | |
| !! | TCTTTCTGCTATTTCCAAAT+TGG | + | chr3_3:51220255-51220274 | Msa0456910:five_prime_UTR | 30.0% |
| !! | CTTTCTGCTATTTCCAAATT+GGG | + | chr3_3:51220256-51220275 | Msa0456910:five_prime_UTR | 30.0% |
| TTGAATGTGAAAACCCAATT+TGG | - | chr3_3:51220272-51220291 | None:intergenic | 30.0% | |
| ! | GGAAAAAACAAAAGGGTATA+AGG | - | chr3_3:51220303-51220322 | None:intergenic | 30.0% |
| !! | TCTAATTGATTTTCCCGTTT+AGG | + | chr3_3:51220330-51220349 | Msa0456910:five_prime_UTR | 30.0% |
| TTTATAGATCTTGCACAAGT+TGG | + | chr3_3:51220480-51220499 | Msa0456910:five_prime_UTR | 30.0% | |
| GTTATCTTATTGGACCAATA+AGG | + | chr3_3:51220511-51220530 | Msa0456910:five_prime_UTR | 30.0% | |
| AGATAAATGAAGAGAACCAA+AGG | - | chr3_3:51220735-51220754 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTGTGATGAAGT+GGG | + | chr3_3:51220853-51220872 | Msa0456910:exon | 30.0% |
| ATTCCAACTATACCAACAAT+TGG | + | chr3_3:51220927-51220946 | Msa0456910:CDS | 30.0% | |
| AAACCAATTGTTGGTATAGT+TGG | - | chr3_3:51220933-51220952 | None:intergenic | 30.0% | |
| !!! | CTATACCAACAATTGGTTTT+TGG | + | chr3_3:51220934-51220953 | Msa0456910:CDS | 30.0% |
| ATCTTCCAAAAACCAATTGT+TGG | - | chr3_3:51220942-51220961 | None:intergenic | 30.0% | |
| ATTGTAGCAATAGCATTAAC+AGG | + | chr3_3:51220960-51220979 | Msa0456910:CDS | 30.0% | |
| TGATGTGATGAATCAGTATA+AGG | + | chr3_3:51221102-51221121 | Msa0456910:CDS | 30.0% | |
| GATGAATCAGTATAAGGAAT+TGG | + | chr3_3:51221108-51221127 | Msa0456910:CDS | 30.0% | |
| GATGTTTGTAATATAGAAGC+TGG | + | chr3_3:51221136-51221155 | Msa0456910:CDS | 30.0% | |
| TTGTAATATAGAAGCTGGTT+TGG | + | chr3_3:51221141-51221160 | Msa0456910:CDS | 30.0% | |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr3_3:51221192-51221211 | Msa0456910:CDS | 30.0% |
| ATCTTACTTGTGTTCTTCTT+CGG | - | chr3_3:51221317-51221336 | None:intergenic | 30.0% | |
| ! | TTTTGTCAAAATCACGATGA+CGG | + | chr3_3:51221531-51221550 | Msa0456910:intron | 30.0% |
| ! | GAGAGTTAGGTATTTTCTAA+TGG | + | chr3_3:51221681-51221700 | Msa0456910:intron | 30.0% |
| !! | GGTATTTTCTAATGGTGTTA+AGG | + | chr3_3:51221689-51221708 | Msa0456910:intron | 30.0% |
| !! | ATTTGACAGGTTGTTTCTAT+TGG | + | chr3_3:51221833-51221852 | Msa0456910:intron | 30.0% |
| !! | TTTGACAGGTTGTTTCTATT+GGG | + | chr3_3:51221834-51221853 | Msa0456910:intron | 30.0% |
| ! | AAAAGTATGGAAAAGGTGAT+TGG | + | chr3_3:51221862-51221881 | Msa0456910:CDS | 30.0% |
| ! | TGATGAAATATTTCTGAGCA+TGG | - | chr3_3:51221941-51221960 | None:intergenic | 30.0% |
| TATTTCATCAGACAACTTTC+AGG | + | chr3_3:51221951-51221970 | Msa0456910:CDS | 30.0% | |
| ! | ATGAAAACTTGTTCATGTGA+TGG | - | chr3_3:51222167-51222186 | None:intergenic | 30.0% |
| AAATAAGAAGACTCATGAAG+AGG | - | chr3_3:51222257-51222276 | None:intergenic | 30.0% | |
| !! | CTTCATGAGTCTTCTTATTT+TGG | + | chr3_3:51222257-51222276 | Msa0456910:CDS | 30.0% |
| TTAGTTAGTTATTGCCTTCT+TGG | + | chr3_3:51222491-51222510 | Msa0456910:three_prime_UTR | 30.0% | |
| ATCAAGTTCATATACCAAGA+AGG | - | chr3_3:51222508-51222527 | None:intergenic | 30.0% | |
| ! | TATGAACTTGATGATAGCAT+TGG | + | chr3_3:51222516-51222535 | Msa0456910:three_prime_UTR | 30.0% |
| AACAACCTTAAACCTATGAA+AGG | + | chr3_3:51222560-51222579 | Msa0456910:three_prime_UTR | 30.0% | |
| TTTCACCTTTCATAGGTTTA+AGG | - | chr3_3:51222568-51222587 | None:intergenic | 30.0% | |
| AACTTATGCATAGCCTAAAC+GGG | - | chr3_3:51220346-51220365 | None:intergenic | 35.0% | |
| CAACTTATGCATAGCCTAAA+CGG | - | chr3_3:51220347-51220366 | None:intergenic | 35.0% | |
| !! | GGTTTCTAGGGTTATCTTAT+TGG | + | chr3_3:51220501-51220520 | Msa0456910:five_prime_UTR | 35.0% |
| TAAATGAAGAGAACCAAAGG+TGG | - | chr3_3:51220732-51220751 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTTTTGTGATGAAG+TGG | + | chr3_3:51220852-51220871 | Msa0456910:exon | 35.0% |
| ! | TTTTGTGATGAAGTGGGAAA+TGG | + | chr3_3:51220859-51220878 | Msa0456910:exon | 35.0% |
| TTTGAACAAATGGTGCATGA+GGG | - | chr3_3:51220907-51220926 | None:intergenic | 35.0% | |
| ! | TTTTGAACAAATGGTGCATG+AGG | - | chr3_3:51220908-51220927 | None:intergenic | 35.0% |
| ! | TCAAACAATTTGTTCTCTGC+AGG | - | chr3_3:51221001-51221020 | None:intergenic | 35.0% |
| TGCTCTTGCAGTTTATGATA+AGG | + | chr3_3:51221024-51221043 | Msa0456910:CDS | 35.0% | |
| AGTTTATGATAAGGATACGC+CGG | + | chr3_3:51221033-51221052 | Msa0456910:CDS | 35.0% | |
| GTAGTACTATAACCAGGAAT+TGG | - | chr3_3:51221169-51221188 | None:intergenic | 35.0% | |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr3_3:51221191-51221210 | Msa0456910:CDS | 35.0% |
| ! | TTCACCCAATCTAAGGTAAA+AGG | - | chr3_3:51221199-51221218 | None:intergenic | 35.0% |
| AGAAGAATTCACCCAATCTA+AGG | - | chr3_3:51221206-51221225 | None:intergenic | 35.0% | |
| TTAGATTGGGTGAATTCTTC+TGG | + | chr3_3:51221205-51221224 | Msa0456910:CDS | 35.0% | |
| ! | GTGAATTCTTCTGGTTATGA+TGG | + | chr3_3:51221214-51221233 | Msa0456910:CDS | 35.0% |
| !!! | TCTGGTTATGATGGTTTTAG+AGG | + | chr3_3:51221223-51221242 | Msa0456910:CDS | 35.0% |
| !!! | GATGGTTTTAGAGGAATTAC+TGG | + | chr3_3:51221232-51221251 | Msa0456910:CDS | 35.0% |
| AACTGATATCAGTGCATCTT+TGG | + | chr3_3:51221457-51221476 | Msa0456910:intron | 35.0% | |
| GTTTGGATTGACGGTTAATT+TGG | - | chr3_3:51221576-51221595 | None:intergenic | 35.0% | |
| ACTTTAAATTACATCCGGTC+AGG | - | chr3_3:51221604-51221623 | None:intergenic | 35.0% | |
| TTATGTATGAACCTAGGAGT+TGG | + | chr3_3:51221624-51221643 | Msa0456910:intron | 35.0% | |
| CTATTGGGTCTGAAAAAGTA+TGG | + | chr3_3:51221849-51221868 | Msa0456910:CDS | 35.0% | |
| ! | GGTCTGAAAAAGTATGGAAA+AGG | + | chr3_3:51221855-51221874 | Msa0456910:CDS | 35.0% |
| GTGATTGGAGAAACATATCA+AGG | + | chr3_3:51221877-51221896 | Msa0456910:CDS | 35.0% | |
| ! | CAAGTTTTCATGTCTCCTTA+TGG | + | chr3_3:51222176-51222195 | Msa0456910:CDS | 35.0% |
| ! | AAAACCATGTTTTGTGTCTG+AGG | - | chr3_3:51222284-51222303 | None:intergenic | 35.0% |
| GTTGTTGAGAAGATTGCATT+TGG | - | chr3_3:51222307-51222326 | None:intergenic | 35.0% | |
| ATTCACATGCATGATGTTGT+TGG | + | chr3_3:51222330-51222349 | Msa0456910:exon | 35.0% | |
| !! | TCTTGCACAAGTTGGTTTCT+AGG | + | chr3_3:51220488-51220507 | Msa0456910:five_prime_UTR | 40.0% |
| !! | CTTGCACAAGTTGGTTTCTA+GGG | + | chr3_3:51220489-51220508 | Msa0456910:five_prime_UTR | 40.0% |
| TGTGGTAAATTCTCCACCTT+TGG | + | chr3_3:51220716-51220735 | Msa0456910:five_prime_UTR | 40.0% | |
| ! | GCATTAACAGGAGCACAAAA+TGG | + | chr3_3:51220972-51220991 | Msa0456910:CDS | 40.0% |
| CATCAACAACACTCTTTCCA+GGG | - | chr3_3:51221087-51221106 | None:intergenic | 40.0% | |
| ACATCAACAACACTCTTTCC+AGG | - | chr3_3:51221088-51221107 | None:intergenic | 40.0% | |
| GAAGCAGTAGTACTATAACC+AGG | - | chr3_3:51221175-51221194 | None:intergenic | 40.0% | |
| AGAGGAATTACTGGAAAGAG+AGG | + | chr3_3:51221241-51221260 | Msa0456910:CDS | 40.0% | |
| ATTTCACTTCACCAACTCCT+AGG | - | chr3_3:51221638-51221657 | None:intergenic | 40.0% | |
| CAAGGAACTTTGTGATCACT+AGG | + | chr3_3:51221895-51221914 | Msa0456910:CDS | 40.0% | |
| TTCATCAGACAACTTTCAGG+AGG | + | chr3_3:51221954-51221973 | Msa0456910:CDS | 40.0% | |
| !! | CTCTTGGTTTCTTCTGAAGT+TGG | - | chr3_3:51222050-51222069 | None:intergenic | 40.0% |
| ! | GTTTGGTGAAGTTGATCTCT+TGG | - | chr3_3:51222066-51222085 | None:intergenic | 40.0% |
| CTGAAAATGCATCTCAGAAG+TGG | - | chr3_3:51222120-51222139 | None:intergenic | 40.0% | |
| TTGAATGCTGTCATAGTAGC+TGG | - | chr3_3:51222143-51222162 | None:intergenic | 40.0% | |
| !! | TGCATGATGTTGTTGGTGAT+TGG | + | chr3_3:51222337-51222356 | Msa0456910:exon | 40.0% |
| TTGCAGCTTTCACCTTTCAT+AGG | - | chr3_3:51222575-51222594 | None:intergenic | 40.0% | |
| TATGAAAGGTGAAAGCTGCA+AGG | + | chr3_3:51222574-51222593 | Msa0456910:three_prime_UTR | 40.0% | |
| ATGATAAGGATACGCCGGAT+CGG | + | chr3_3:51221038-51221057 | Msa0456910:CDS | 45.0% | |
| TTCTGGTAGATCTCCTGATC+AGG | + | chr3_3:51221267-51221286 | Msa0456910:CDS | 45.0% | |
| GTAGATCTCCTGATCAGGAA+AGG | + | chr3_3:51221272-51221291 | Msa0456910:CDS | 45.0% | |
| CCTTTCTTCCTTTCCTGATC+AGG | - | chr3_3:51221283-51221302 | None:intergenic | 45.0% | |
| CCTGATCAGGAAAGGAAGAA+AGG | + | chr3_3:51221280-51221299 | Msa0456910:CDS | 45.0% | |
| ! | AAAGGAAGAAAGGTGTGCCA+TGG | + | chr3_3:51221290-51221309 | Msa0456910:CDS | 45.0% |
| TTGTGTTCTTCTTCGGTCCA+TGG | - | chr3_3:51221310-51221329 | None:intergenic | 45.0% | |
| CAGGTGCATGTTTGGATTGA+CGG | - | chr3_3:51221585-51221604 | None:intergenic | 45.0% | |
| AATCCAAACATGCACCTGAC+CGG | + | chr3_3:51221587-51221606 | Msa0456910:intron | 45.0% | |
| TGGACCTCAGACACAAAACA+TGG | + | chr3_3:51222277-51222296 | Msa0456910:CDS | 45.0% | |
| GGTGCATGAGGGTGAGAATT+TGG | - | chr3_3:51220896-51220915 | None:intergenic | 50.0% | |
| AAGGTAGCTGCAATGATCCC+TGG | + | chr3_3:51221067-51221086 | Msa0456910:CDS | 50.0% | |
| !! | GCTGGTTTGGTTCCAATTCC+TGG | + | chr3_3:51221154-51221173 | Msa0456910:CDS | 50.0% |
| ACTGGAAAGAGAGGCTCTTC+TGG | + | chr3_3:51221250-51221269 | Msa0456910:CDS | 50.0% | |
| ! | GCATGGCTAGCTACTTGTGT+TGG | - | chr3_3:51221924-51221943 | None:intergenic | 50.0% |
| ! | CTCAGAAGTGGTGTTAGCAG+TGG | - | chr3_3:51222108-51222127 | None:intergenic | 50.0% |
| ATAAGGATACGCCGGATCGG+TGG | + | chr3_3:51221041-51221060 | Msa0456910:CDS | 55.0% | |
| GCTACCTTATGCCACCGATC+CGG | - | chr3_3:51221055-51221074 | None:intergenic | 55.0% | |
| CATCCGGTCAGGTGCATGTT+TGG | - | chr3_3:51221593-51221612 | None:intergenic | 55.0% | |
| TACGCCGGATCGGTGGCATA+AGG | + | chr3_3:51221048-51221067 | Msa0456910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 51220195 | 51222684 | 51220195 | ID=Msa0456910;Name=Msa0456910 |
| chr3_3 | mRNA | 51220195 | 51222684 | 51220195 | ID=Msa0456910-mRNA-1;Parent=Msa0456910;Name=Msa0456910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=671|1|1|1|1|1|2|341|321 |
| chr3_3 | exon | 51220195 | 51221329 | 51220195 | ID=Msa0456910-mRNA-1:exon:9803;Parent=Msa0456910-mRNA-1 |
| chr3_3 | exon | 51221842 | 51222684 | 51221842 | ID=Msa0456910-mRNA-1:exon:9804;Parent=Msa0456910-mRNA-1 |
| chr3_3 | five_prime_UTR | 51220195 | 51220865 | 51220195 | ID=Msa0456910-mRNA-1:five_prime_utr;Parent=Msa0456910-mRNA-1 |
| chr3_3 | CDS | 51220866 | 51221329 | 51220866 | ID=Msa0456910-mRNA-1:cds;Parent=Msa0456910-mRNA-1 |
| chr3_3 | CDS | 51221842 | 51222343 | 51221842 | ID=Msa0456910-mRNA-1:cds;Parent=Msa0456910-mRNA-1 |
| chr3_3 | three_prime_UTR | 51222344 | 51222684 | 51222344 | ID=Msa0456910-mRNA-1:three_prime_utr;Parent=Msa0456910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
