Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412440 | XP_013460157.1 | 98.447 | 322 | 4 | 1 | 1 | 321 | 1 | 322 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412440 | sp|Q8S9H7|DIV_ANTMA | 57.944 | 321 | 102 | 12 | 5 | 313 | 1 | 300 | 8.24e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412440 | A0A072UYJ1 | 98.447 | 322 | 4 | 1 | 1 | 321 | 1 | 322 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0412440 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048000 | Msa0412440 | 0.814130 | 1.802087e-51 | -8.615850e-47 |
| Msa0085360 | Msa0412440 | -0.803094 | 4.106671e-49 | -8.615850e-47 |
| Msa0114540 | Msa0412440 | -0.815843 | 7.511066e-52 | -8.615850e-47 |
| Msa0124340 | Msa0412440 | 0.804519 | 2.077842e-49 | -8.615850e-47 |
| Msa0129510 | Msa0412440 | 0.807771 | 4.295870e-50 | -8.615850e-47 |
| Msa0177700 | Msa0412440 | -0.809935 | 1.479608e-50 | -8.615850e-47 |
| Msa0185590 | Msa0412440 | 0.804810 | 1.806263e-49 | -8.615850e-47 |
| Msa0191250 | Msa0412440 | 0.808036 | 3.773099e-50 | -8.615850e-47 |
| Msa0377530 | Msa0412440 | 0.825283 | 5.101543e-54 | -8.615850e-47 |
| Msa0377550 | Msa0412440 | 0.803461 | 3.448610e-49 | -8.615850e-47 |
| Msa0412440 | Msa0415810 | 0.804060 | 2.588981e-49 | -8.615850e-47 |
| Msa0412440 | Msa0419640 | -0.808103 | 3.649733e-50 | -8.615850e-47 |
| Msa0412440 | Msa0423040 | 0.804840 | 1.780685e-49 | -8.615850e-47 |
| Msa0412440 | Msa0426810 | 0.811956 | 5.402376e-51 | -8.615850e-47 |
| Msa0412440 | Msa0437150 | 0.801012 | 1.100426e-48 | -8.615850e-47 |
| Msa0412440 | Msa0456910 | 0.976926 | 9.063705e-143 | -8.615850e-47 |
| Msa0412440 | Msa0475580 | 0.803885 | 2.816139e-49 | -8.615850e-47 |
| Msa0412440 | Msa0504240 | 0.869191 | 3.723675e-66 | -8.615850e-47 |
| Msa0412440 | Msa0506980 | 0.801268 | 9.754130e-49 | -8.615850e-47 |
| Msa0412440 | Msa0512870 | 0.805744 | 1.151252e-49 | -8.615850e-47 |
| Msa0412440 | Msa0517490 | 0.830849 | 2.328967e-55 | -8.615850e-47 |
| Msa0412440 | Msa0517840 | 0.806539 | 7.831348e-50 | -8.615850e-47 |
| Msa0412440 | Msa0519220 | 0.800593 | 1.339813e-48 | -8.615850e-47 |
| Msa0412440 | Msa0521540 | 0.801392 | 9.200462e-49 | -8.615850e-47 |
| Msa0412440 | Msa0530850 | 0.800954 | 1.130973e-48 | -8.615850e-47 |
| Msa0412440 | Msa0567020 | 0.818061 | 2.385319e-52 | -8.615850e-47 |
| Msa0412440 | Msa0619180 | 0.807667 | 4.518690e-50 | -8.615850e-47 |
| Msa0412440 | Msa0649980 | 0.800368 | 1.489372e-48 | -8.615850e-47 |
| Msa0412440 | Msa0658570 | 0.800775 | 1.230316e-48 | -8.615850e-47 |
| Msa0412440 | Msa0693380 | 0.809252 | 2.074426e-50 | -8.615850e-47 |
| Msa0412440 | Msa0703490 | 0.805049 | 1.610071e-49 | -8.615850e-47 |
| Msa0412440 | Msa0743680 | 0.836996 | 6.742994e-57 | -8.615850e-47 |
| Msa0412440 | Msa0754720 | -0.806244 | 9.036878e-50 | -8.615850e-47 |
| Msa0412440 | Msa0756630 | -0.816482 | 5.406189e-52 | -8.615850e-47 |
| Msa0412440 | Msa0778320 | 0.807058 | 6.083649e-50 | -8.615850e-47 |
| Msa0412440 | Msa0784380 | 0.836804 | 7.547811e-57 | -8.615850e-47 |
| Msa0412440 | Msa0784620 | 0.827704 | 1.350318e-54 | -8.615850e-47 |
| Msa0412440 | Msa0814320 | 0.816791 | 4.609991e-52 | -8.615850e-47 |
| Msa0412440 | Msa0824730 | 0.812243 | 4.676484e-51 | -8.615850e-47 |
| Msa0412440 | Msa0829620 | 0.811556 | 6.598988e-51 | -8.615850e-47 |
| Msa0412440 | Msa0830530 | 0.807368 | 5.231142e-50 | -8.615850e-47 |
| Msa0412440 | Msa0844240 | 0.801482 | 8.819593e-49 | -8.615850e-47 |
| Msa0412440 | Msa0863800 | 0.837065 | 6.476650e-57 | -8.615850e-47 |
| Msa0412440 | Msa0863930 | 0.803723 | 3.042004e-49 | -8.615850e-47 |
| Msa0412440 | Msa0867890 | 0.804564 | 2.033113e-49 | -8.615850e-47 |
| Msa0412440 | Msa0895790 | 0.818216 | 2.200555e-52 | -8.615850e-47 |
| Msa0412440 | Msa0908170 | 0.800546 | 1.370280e-48 | -8.615850e-47 |
| Msa0412440 | Msa0909000 | -0.802237 | 6.170710e-49 | -8.615850e-47 |
| Msa0412440 | Msa0930780 | 0.817500 | 3.192570e-52 | -8.615850e-47 |
| Msa0412440 | Msa1037650 | -0.821037 | 4.994615e-53 | -8.615850e-47 |
| Msa0412440 | Msa1040120 | 0.803383 | 3.578808e-49 | -8.615850e-47 |
| Msa0412440 | Msa1078710 | 0.818627 | 1.775705e-52 | -8.615850e-47 |
| Msa0412440 | Msa1085300 | 0.832325 | 1.008266e-55 | -8.615850e-47 |
| Msa0412440 | Msa1087510 | -0.810956 | 8.906424e-51 | -8.615850e-47 |
| Msa0412440 | Msa1127650 | 0.802979 | 4.337685e-49 | -8.615850e-47 |
| Msa0412440 | Msa1133710 | 0.813738 | 2.198878e-51 | -8.615850e-47 |
| Msa0412440 | Msa1211050 | -0.810550 | 1.090176e-50 | -8.615850e-47 |
| Msa0412440 | Msa1264020 | 0.801020 | 1.096510e-48 | -8.615850e-47 |
| Msa0412440 | Msa1314100 | 0.800727 | 1.258152e-48 | -8.615850e-47 |
| Msa0412440 | Msa1362510 | 0.817549 | 3.113789e-52 | -8.615850e-47 |
| Msa0412440 | Msa1376890 | 0.810612 | 1.057184e-50 | -8.615850e-47 |
| Msa0412440 | Msa1386230 | 0.803987 | 2.681628e-49 | -8.615850e-47 |
| Msa0412440 | Msa1390310 | 0.800867 | 1.178232e-48 | -8.615850e-47 |
| Msa0412440 | Msa1397050 | 0.809088 | 2.249591e-50 | -8.615850e-47 |
| Msa0412440 | Msa1398860 | 0.840860 | 6.742386e-58 | -8.615850e-47 |
| Msa0412440 | Msa1401530 | 0.801935 | 7.121047e-49 | -8.615850e-47 |
| Msa0412440 | Msa1404540 | 0.830673 | 2.573189e-55 | -8.615850e-47 |
| Msa0412440 | Msa1408760 | -0.824129 | 9.539156e-54 | -8.615850e-47 |
| Msa0412440 | Msa1431060 | 0.824480 | 7.891111e-54 | -8.615850e-47 |
| Msa0412440 | Msa1459180 | 0.819734 | 9.939710e-53 | -8.615850e-47 |
| Msa0412440 | Msa1460470 | 0.804707 | 1.898046e-49 | -8.615850e-47 |
| Msa0239800 | Msa0412440 | 0.804972 | 1.671423e-49 | -8.615850e-47 |
| Msa0239940 | Msa0412440 | 0.801725 | 7.861557e-49 | -8.615850e-47 |
| Msa0260810 | Msa0412440 | 0.821166 | 4.665327e-53 | -8.615850e-47 |
| Msa0262930 | Msa0412440 | 0.810818 | 9.540533e-51 | -8.615850e-47 |
| Msa0292120 | Msa0412440 | 0.803232 | 3.846464e-49 | -8.615850e-47 |
| Msa0311860 | Msa0412440 | 0.812371 | 4.383752e-51 | -8.615850e-47 |
| Msa0317510 | Msa0412440 | 0.808845 | 2.535664e-50 | -8.615850e-47 |
| Msa0327410 | Msa0412440 | 0.803828 | 2.893593e-49 | -8.615850e-47 |
| Msa0335040 | Msa0412440 | 0.825974 | 3.498170e-54 | -8.615850e-47 |
| Msa0337850 | Msa0412440 | 0.802333 | 5.897049e-49 | -8.615850e-47 |
| Msa0362780 | Msa0412440 | 0.810704 | 1.009567e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412440 | MtrunA17_Chr3g0104071 | 98.447 | 322 | 4 | 1 | 1 | 321 | 1 | 322 | 0.0 | 664 |
| Msa0412440 | MtrunA17_Chr5g0429521 | 67.073 | 328 | 80 | 8 | 1 | 321 | 1 | 307 | 1.09e-150 | 425 |
| Msa0412440 | MtrunA17_Chr7g0241761 | 53.870 | 323 | 115 | 11 | 5 | 315 | 11 | 311 | 1.03e-103 | 306 |
| Msa0412440 | MtrunA17_Chr5g0436501 | 65.306 | 196 | 55 | 4 | 27 | 220 | 16 | 200 | 1.22e-82 | 251 |
| Msa0412440 | MtrunA17_Chr1g0162081 | 48.744 | 199 | 82 | 2 | 35 | 220 | 4 | 195 | 9.62e-61 | 196 |
| Msa0412440 | MtrunA17_Chr1g0210471 | 45.122 | 246 | 110 | 7 | 41 | 284 | 22 | 244 | 1.37e-58 | 188 |
| Msa0412440 | MtrunA17_Chr4g0062741 | 47.368 | 209 | 74 | 5 | 43 | 220 | 8 | 211 | 1.58e-52 | 175 |
| Msa0412440 | MtrunA17_Chr8g0365011 | 39.487 | 195 | 84 | 4 | 40 | 220 | 5 | 179 | 3.67e-37 | 134 |
| Msa0412440 | MtrunA17_Chr2g0331031 | 48.322 | 149 | 59 | 5 | 142 | 273 | 104 | 251 | 5.83e-33 | 124 |
| Msa0412440 | MtrunA17_Chr4g0055931 | 60.000 | 100 | 38 | 1 | 121 | 220 | 71 | 168 | 5.37e-32 | 121 |
| Msa0412440 | MtrunA17_Chr6g0488471 | 73.611 | 72 | 19 | 0 | 141 | 212 | 91 | 162 | 3.85e-31 | 118 |
| Msa0412440 | MtrunA17_Chr8g0389241 | 71.233 | 73 | 20 | 1 | 139 | 211 | 97 | 168 | 2.59e-30 | 116 |
| Msa0412440 | MtrunA17_Chr5g0415191 | 68.966 | 87 | 25 | 1 | 134 | 220 | 91 | 175 | 3.93e-30 | 116 |
| Msa0412440 | MtrunA17_Chr4g0059701 | 61.702 | 94 | 32 | 1 | 135 | 228 | 72 | 161 | 1.39e-28 | 111 |
| Msa0412440 | MtrunA17_Chr3g0092621 | 53.846 | 91 | 39 | 1 | 147 | 237 | 84 | 171 | 3.37e-25 | 99.8 |
| Msa0412440 | MtrunA17_Chr5g0440731 | 58.750 | 80 | 29 | 2 | 139 | 215 | 97 | 175 | 3.30e-24 | 100 |
| Msa0412440 | MtrunA17_Chr8g0364741 | 38.060 | 134 | 71 | 2 | 35 | 164 | 2 | 127 | 1.31e-23 | 94.0 |
| Msa0412440 | MtrunA17_Chr5g0440741 | 65.714 | 70 | 20 | 2 | 149 | 215 | 102 | 170 | 1.45e-23 | 98.2 |
| Msa0412440 | MtrunA17_Chr3g0135671 | 58.025 | 81 | 27 | 2 | 144 | 217 | 88 | 168 | 1.50e-23 | 96.7 |
| Msa0412440 | MtrunA17_Chr5g0432921 | 36.207 | 174 | 88 | 6 | 35 | 203 | 13 | 168 | 7.60e-23 | 94.7 |
| Msa0412440 | MtrunA17_Chr5g0409841 | 61.333 | 75 | 26 | 2 | 143 | 215 | 88 | 161 | 1.38e-22 | 94.4 |
| Msa0412440 | MtrunA17_Chr5g0432941 | 35.676 | 185 | 95 | 6 | 20 | 203 | 7 | 168 | 1.39e-22 | 94.0 |
| Msa0412440 | MtrunA17_Chr6g0452791 | 77.083 | 48 | 11 | 0 | 147 | 194 | 80 | 127 | 2.18e-20 | 86.7 |
| Msa0412440 | MtrunA17_Chr5g0409831 | 60.526 | 76 | 27 | 1 | 143 | 215 | 73 | 148 | 2.18e-20 | 88.2 |
| Msa0412440 | MtrunA17_Chr5g0404101 | 50.000 | 68 | 34 | 0 | 38 | 105 | 14 | 81 | 1.12e-19 | 82.4 |
| Msa0412440 | MtrunA17_Chr3g0144631 | 57.576 | 66 | 28 | 0 | 43 | 108 | 16 | 81 | 1.26e-19 | 81.6 |
| Msa0412440 | MtrunA17_Chr1g0155181 | 52.113 | 71 | 34 | 0 | 40 | 110 | 4 | 74 | 1.43e-19 | 82.0 |
| Msa0412440 | MtrunA17_Chr8g0373111 | 54.412 | 68 | 30 | 1 | 40 | 107 | 2 | 68 | 8.83e-19 | 79.3 |
| Msa0412440 | MtrunA17_Chr8g0373121 | 54.412 | 68 | 30 | 1 | 40 | 107 | 2 | 68 | 8.83e-19 | 79.3 |
| Msa0412440 | MtrunA17_Chr8g0373131 | 54.412 | 68 | 30 | 1 | 40 | 107 | 2 | 68 | 8.97e-19 | 79.3 |
| Msa0412440 | MtrunA17_Chr8g0364731 | 61.194 | 67 | 24 | 1 | 156 | 220 | 10 | 76 | 1.07e-18 | 82.4 |
| Msa0412440 | MtrunA17_Chr3g0141601 | 53.731 | 67 | 31 | 0 | 40 | 106 | 4 | 70 | 1.15e-17 | 77.0 |
| Msa0412440 | MtrunA17_Chr6g0449111 | 47.222 | 72 | 38 | 0 | 40 | 111 | 7 | 78 | 3.38e-16 | 72.4 |
| Msa0412440 | MtrunA17_Chr5g0404301 | 55.738 | 61 | 26 | 1 | 43 | 103 | 4 | 63 | 2.15e-15 | 69.7 |
| Msa0412440 | MtrunA17_Chr8g0373101 | 50.000 | 68 | 33 | 1 | 43 | 110 | 5 | 71 | 2.78e-15 | 69.7 |
| Msa0412440 | MtrunA17_Chr3g0081631 | 50.704 | 71 | 34 | 1 | 36 | 105 | 3 | 73 | 1.06e-14 | 68.6 |
| Msa0412440 | MtrunA17_Chr3g0113121 | 50.667 | 75 | 30 | 1 | 149 | 216 | 97 | 171 | 3.09e-14 | 70.9 |
| Msa0412440 | MtrunA17_Chr7g0255841 | 55.932 | 59 | 26 | 0 | 47 | 105 | 16 | 74 | 6.33e-14 | 66.6 |
| Msa0412440 | MtrunA17_Chr1g0192061 | 52.113 | 71 | 29 | 2 | 149 | 215 | 63 | 132 | 1.92e-13 | 67.8 |
| Msa0412440 | MtrunA17_Chr8g0370121 | 43.056 | 72 | 36 | 2 | 144 | 211 | 97 | 167 | 1.10e-11 | 63.9 |
| Msa0412440 | MtrunA17_Chr3g0141641 | 43.284 | 67 | 38 | 0 | 43 | 109 | 3 | 69 | 1.86e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412440 | AT5G58900.1 | 69.849 | 199 | 52 | 3 | 27 | 218 | 15 | 212 | 2.83e-97 | 289 |
| Msa0412440 | AT2G38090.1 | 61.778 | 225 | 54 | 5 | 5 | 216 | 5 | 210 | 4.68e-95 | 284 |
| Msa0412440 | AT3G11280.2 | 54.812 | 239 | 84 | 5 | 43 | 269 | 33 | 259 | 1.40e-79 | 243 |
| Msa0412440 | AT3G11280.1 | 54.812 | 239 | 84 | 5 | 43 | 269 | 33 | 259 | 1.40e-79 | 243 |
| Msa0412440 | AT5G05790.2 | 64.398 | 191 | 60 | 4 | 39 | 227 | 27 | 211 | 2.31e-79 | 243 |
| Msa0412440 | AT5G05790.1 | 64.398 | 191 | 60 | 4 | 39 | 227 | 27 | 211 | 2.31e-79 | 243 |
| Msa0412440 | AT5G01200.1 | 58.738 | 206 | 60 | 7 | 27 | 216 | 19 | 215 | 3.84e-72 | 224 |
| Msa0412440 | AT5G08520.1 | 50.000 | 194 | 79 | 3 | 37 | 220 | 6 | 191 | 1.87e-57 | 187 |
| Msa0412440 | AT1G49010.1 | 47.449 | 196 | 79 | 3 | 43 | 215 | 8 | 202 | 4.40e-51 | 172 |
| Msa0412440 | AT5G04760.1 | 48.876 | 178 | 80 | 3 | 40 | 217 | 3 | 169 | 6.52e-50 | 166 |
| Msa0412440 | AT5G23650.1 | 37.945 | 253 | 122 | 7 | 37 | 278 | 7 | 235 | 1.73e-41 | 147 |
| Msa0412440 | AT5G47390.1 | 63.529 | 85 | 31 | 0 | 135 | 219 | 84 | 168 | 2.45e-31 | 121 |
| Msa0412440 | AT3G10580.2 | 36.323 | 223 | 108 | 9 | 43 | 253 | 8 | 208 | 1.17e-30 | 116 |
| Msa0412440 | AT3G10580.1 | 36.323 | 223 | 108 | 9 | 43 | 253 | 8 | 208 | 1.39e-30 | 117 |
| Msa0412440 | AT4G09450.1 | 40.351 | 171 | 82 | 3 | 42 | 212 | 6 | 156 | 1.49e-29 | 112 |
| Msa0412440 | AT5G61620.1 | 55.140 | 107 | 44 | 1 | 117 | 223 | 82 | 184 | 2.86e-29 | 114 |
| Msa0412440 | AT5G56840.1 | 57.609 | 92 | 36 | 2 | 133 | 223 | 79 | 168 | 1.11e-27 | 108 |
| Msa0412440 | AT3G16350.1 | 66.667 | 87 | 27 | 1 | 142 | 228 | 132 | 216 | 2.16e-27 | 110 |
| Msa0412440 | AT1G70000.1 | 68.354 | 79 | 23 | 1 | 134 | 212 | 87 | 163 | 3.80e-27 | 107 |
| Msa0412440 | AT1G70000.2 | 68.354 | 79 | 23 | 1 | 134 | 212 | 87 | 163 | 3.80e-27 | 107 |
| Msa0412440 | AT1G74840.2 | 57.692 | 104 | 42 | 1 | 142 | 243 | 91 | 194 | 6.31e-26 | 103 |
| Msa0412440 | AT1G74840.1 | 57.692 | 104 | 42 | 1 | 142 | 243 | 91 | 194 | 9.92e-26 | 103 |
| Msa0412440 | AT1G19000.2 | 62.791 | 86 | 31 | 1 | 143 | 227 | 98 | 183 | 2.43e-25 | 103 |
| Msa0412440 | AT1G19000.1 | 62.791 | 86 | 31 | 1 | 143 | 227 | 98 | 183 | 2.43e-25 | 103 |
| Msa0412440 | AT1G75250.2 | 53.846 | 78 | 36 | 0 | 33 | 110 | 2 | 79 | 3.22e-21 | 87.0 |
| Msa0412440 | AT1G75250.1 | 53.846 | 78 | 36 | 0 | 33 | 110 | 2 | 79 | 4.64e-21 | 87.4 |
| Msa0412440 | AT3G10590.1 | 37.017 | 181 | 97 | 7 | 40 | 212 | 4 | 175 | 6.43e-20 | 86.7 |
| Msa0412440 | AT2G21650.1 | 54.545 | 66 | 30 | 0 | 43 | 108 | 14 | 79 | 1.90e-17 | 77.0 |
| Msa0412440 | AT4G39250.1 | 47.059 | 68 | 36 | 0 | 43 | 110 | 14 | 81 | 8.12e-16 | 72.4 |
| Msa0412440 | AT1G19510.1 | 55.738 | 61 | 27 | 0 | 47 | 107 | 16 | 76 | 1.32e-15 | 72.0 |
| Msa0412440 | AT2G18328.1 | 51.613 | 62 | 30 | 0 | 47 | 108 | 15 | 76 | 3.28e-12 | 61.6 |
| Msa0412440 | AT4G36570.1 | 61.364 | 44 | 17 | 0 | 43 | 86 | 12 | 55 | 8.30e-11 | 57.4 |
Find 90 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGAGTCTTCTTATTT+TGG | 0.078101 | 3_2:+55856381 | Msa0412440:CDS |
| TTTCACCTTTCATAGGTTTA+AGG | 0.140387 | 3_2:-55856686 | None:intergenic |
| ATTCAAGACTATTACCTTAT+TGG | 0.153260 | 3_2:-55854647 | None:intergenic |
| TATTGAGTTATTTATTATTA+TGG | 0.169866 | 3_2:+55856487 | Msa0412440:three_prime_UTR |
| TTAGTTAGTTATTGCCTTCT+TGG | 0.174768 | 3_2:+55856612 | Msa0412440:three_prime_UTR |
| TCTTTCTGCTATTTCCAAAT+TGG | 0.206893 | 3_2:+55854376 | Msa0412440:five_prime_UTR |
| ATTTGACAGGTTGTTTCTAT+TGG | 0.217886 | 3_2:+55855957 | Msa0412440:intron |
| TTGAATGTGAAAACCCAATT+TGG | 0.228567 | 3_2:-55854390 | None:intergenic |
| TCTTGCACAAGTTGGTTTCT+AGG | 0.236929 | 3_2:+55854610 | Msa0412440:five_prime_UTR |
| GGAGTTAATAATAACTCTTA+TGG | 0.241432 | 3_2:+55856321 | Msa0412440:CDS |
| GGTTTCTAGGGTTATCTTAT+TGG | 0.255506 | 3_2:+55854623 | Msa0412440:five_prime_UTR |
| TATTTCATCAGACAACTTTC+AGG | 0.257079 | 3_2:+55856075 | Msa0412440:CDS |
| CTTGAATATCAATATCAATT+TGG | 0.270388 | 3_2:+55854663 | Msa0412440:five_prime_UTR |
| GGAAAATCAATTAGAAATAA+AGG | 0.272315 | 3_2:-55854443 | None:intergenic |
| TTAGATTGGGTGAATTCTTC+TGG | 0.292652 | 3_2:+55855329 | Msa0412440:CDS |
| AAACCAATTGTTGGTATAGT+TGG | 0.296807 | 3_2:-55855054 | None:intergenic |
| TTCACCCAATCTAAGGTAAA+AGG | 0.308169 | 3_2:-55855320 | None:intergenic |
| CTTTCTGCTATTTCCAAATT+GGG | 0.309736 | 3_2:+55854377 | Msa0412440:five_prime_UTR |
| GCTGGTTTGGTTCCAATTCC+TGG | 0.315843 | 3_2:+55855278 | Msa0412440:CDS |
| GGTGCATGAGGGTGAGAATT+TGG | 0.327156 | 3_2:-55855017 | None:intergenic |
| TTGCAGCTTTCACCTTTCAT+AGG | 0.331595 | 3_2:-55856693 | None:intergenic |
| TTTGACAGGTTGTTTCTATT+GGG | 0.333131 | 3_2:+55855958 | Msa0412440:intron |
| CCTTTCTTCCTTTCCTGATC+AGG | 0.333627 | 3_2:-55855404 | None:intergenic |
| CTCTTGGTTTCTTCTGAAGT+TGG | 0.347825 | 3_2:-55856171 | None:intergenic |
| ACTGGAAAGAGAGGCTCTTC+TGG | 0.351976 | 3_2:+55855374 | Msa0412440:CDS |
| GTTATCTTATTGGACCAATA+AGG | 0.353998 | 3_2:+55854633 | Msa0412440:five_prime_UTR |
| ATCTTACTTGTGTTCTTCTT+CGG | 0.354438 | 3_2:-55855438 | None:intergenic |
| CAACTTATGCATAGCCTAAA+CGG | 0.360566 | 3_2:-55854465 | None:intergenic |
| GCATTAACAGGAGCACAAAA+TGG | 0.365638 | 3_2:+55855096 | Msa0412440:CDS |
| TGTGGTAAATTCTCCACCTT+TGG | 0.367052 | 3_2:+55854840 | Msa0412440:five_prime_UTR |
| AGAAGAATTCACCCAATCTA+AGG | 0.374549 | 3_2:-55855327 | None:intergenic |
| ACATCAACAACACTCTTTCC+AGG | 0.376605 | 3_2:-55855209 | None:intergenic |
| TACTTGTTCATAATCATGTT+TGG | 0.382661 | 3_2:-55856204 | None:intergenic |
| TGCTCTTGCAGTTTATGATA+AGG | 0.387222 | 3_2:+55855148 | Msa0412440:CDS |
| ATTCCAACTATACCAACAAT+TGG | 0.389716 | 3_2:+55855051 | Msa0412440:CDS |
| ATTGTAGCAATAGCATTAAC+AGG | 0.398247 | 3_2:+55855084 | Msa0412440:CDS |
| GATGAATCAGTATAAGGAAT+TGG | 0.401455 | 3_2:+55855232 | Msa0412440:CDS |
| GTAGTACTATAACCAGGAAT+TGG | 0.407318 | 3_2:-55855290 | None:intergenic |
| GTTGTTGAGAAGATTGCATT+TGG | 0.408588 | 3_2:-55856428 | None:intergenic |
| CAATATATTTACATAGAACT+TGG | 0.415544 | 3_2:-55856573 | None:intergenic |
| GTTTGGTGAAGTTGATCTCT+TGG | 0.418126 | 3_2:-55856187 | None:intergenic |
| CTTGCACAAGTTGGTTTCTA+GGG | 0.426235 | 3_2:+55854611 | Msa0412440:five_prime_UTR |
| TCAAACAATTTGTTCTCTGC+AGG | 0.426400 | 3_2:-55855122 | None:intergenic |
| GTGAATTCTTCTGGTTATGA+TGG | 0.427738 | 3_2:+55855338 | Msa0412440:CDS |
| TGCATGATGTTGTTGGTGAT+TGG | 0.429791 | 3_2:+55856461 | Msa0412440:exon |
| TTGTGTTCTTCTTCGGTCCA+TGG | 0.429989 | 3_2:-55855431 | None:intergenic |
| GATGTTTGTAATATAGAAGC+TGG | 0.431912 | 3_2:+55855260 | Msa0412440:CDS |
| AAAAGTATGGAAAAGGTGAT+TGG | 0.434556 | 3_2:+55855986 | Msa0412440:CDS |
| TCTGTAACTTCTGATATTGA+AGG | 0.437794 | 3_2:+55856727 | Msa0412440:three_prime_UTR |
| GAAAATCAATTAGAAATAAA+GGG | 0.438068 | 3_2:-55854442 | None:intergenic |
| TTGTAATATAGAAGCTGGTT+TGG | 0.450084 | 3_2:+55855265 | Msa0412440:CDS |
| TTTATAGATCTTGCACAAGT+TGG | 0.451750 | 3_2:+55854602 | Msa0412440:five_prime_UTR |
| GAGTTATTATTAACTCCATA+AGG | 0.453193 | 3_2:-55856315 | None:intergenic |
| TGATGTGATGAATCAGTATA+AGG | 0.454237 | 3_2:+55855226 | Msa0412440:CDS |
| AACTTATGCATAGCCTAAAC+GGG | 0.468413 | 3_2:-55854464 | None:intergenic |
| GAAAGACACTGAATTTATGA+AGG | 0.477154 | 3_2:-55854359 | None:intergenic |
| TTCTGGTAGATCTCCTGATC+AGG | 0.477520 | 3_2:+55855391 | Msa0412440:CDS |
| CAAGGAACTTTGTGATCACT+AGG | 0.491493 | 3_2:+55856019 | Msa0412440:CDS |
| ATTCACATGCATGATGTTGT+TGG | 0.521276 | 3_2:+55856454 | Msa0412440:exon |
| TTGAATGCTGTCATAGTAGC+TGG | 0.523867 | 3_2:-55856264 | None:intergenic |
| AGAGGAATTACTGGAAAGAG+AGG | 0.531317 | 3_2:+55855365 | Msa0412440:CDS |
| ATTTATCTTTCATATTGTTG+TGG | 0.535933 | 3_2:+55854822 | Msa0412440:five_prime_UTR |
| GCTACCTTATGCCACCGATC+CGG | 0.536074 | 3_2:-55855176 | None:intergenic |
| CCTGATCAGGAAAGGAAGAA+AGG | 0.540469 | 3_2:+55855404 | Msa0412440:CDS |
| AAGGTAGCTGCAATGATCCC+TGG | 0.550717 | 3_2:+55855191 | Msa0412440:CDS |
| GCATGGCTAGCTACTTGTGT+TGG | 0.551417 | 3_2:-55856045 | None:intergenic |
| ATGAAAACTTGTTCATGTGA+TGG | 0.562419 | 3_2:-55856288 | None:intergenic |
| AACAACCTTAAACCTATGAA+AGG | 0.563921 | 3_2:+55856681 | Msa0412440:three_prime_UTR |
| TACGCCGGATCGGTGGCATA+AGG | 0.566659 | 3_2:+55855172 | Msa0412440:CDS |
| ATCAAGTTCATATACCAAGA+AGG | 0.569120 | 3_2:-55856626 | None:intergenic |
| CTCAGAAGTGGTGTTAGCAG+TGG | 0.576504 | 3_2:-55856229 | None:intergenic |
| TGATGAAATATTTCTGAGCA+TGG | 0.587728 | 3_2:-55856062 | None:intergenic |
| ATGATAAGGATACGCCGGAT+CGG | 0.588112 | 3_2:+55855162 | Msa0412440:CDS |
| CTGAAAATGCATCTCAGAAG+TGG | 0.589832 | 3_2:-55856241 | None:intergenic |
| AAATAAGAAGACTCATGAAG+AGG | 0.592849 | 3_2:-55856378 | None:intergenic |
| AAAGACACTGAATTTATGAA+GGG | 0.594445 | 3_2:-55854358 | None:intergenic |
| CATCAACAACACTCTTTCCA+GGG | 0.594776 | 3_2:-55855208 | None:intergenic |
| TATATGATATTTCAAAACAG+AGG | 0.595770 | 3_2:-55854883 | None:intergenic |
| GTGATTGGAGAAACATATCA+AGG | 0.596845 | 3_2:+55856001 | Msa0412440:CDS |
| GTAGATCTCCTGATCAGGAA+AGG | 0.600023 | 3_2:+55855396 | Msa0412440:CDS |
| TTCATCAGACAACTTTCAGG+AGG | 0.604647 | 3_2:+55856078 | Msa0412440:CDS |
| AAAGGAAGAAAGGTGTGCCA+TGG | 0.605391 | 3_2:+55855414 | Msa0412440:CDS |
| ATAAGGATACGCCGGATCGG+TGG | 0.605758 | 3_2:+55855165 | Msa0412440:CDS |
| AGATAAATGAAGAGAACCAA+AGG | 0.617158 | 3_2:-55854856 | None:intergenic |
| TGGACCTCAGACACAAAACA+TGG | 0.622490 | 3_2:+55856401 | Msa0412440:CDS |
| TATGAAAGGTGAAAGCTGCA+AGG | 0.634603 | 3_2:+55856695 | Msa0412440:three_prime_UTR |
| TAAATGAAGAGAACCAAAGG+TGG | 0.648472 | 3_2:-55854853 | None:intergenic |
| AGTTTATGATAAGGATACGC+CGG | 0.649185 | 3_2:+55855157 | Msa0412440:CDS |
| GAAGCAGTAGTACTATAACC+AGG | 0.680914 | 3_2:-55855296 | None:intergenic |
| TTTGAACAAATGGTGCATGA+GGG | 0.682304 | 3_2:-55855028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAGTATATAAGA+AGG | + | chr3_2:55854562-55854581 | Msa0412440:five_prime_UTR | 10.0% |
| !! | TATTGAGTTATTTATTATTA+TGG | + | chr3_2:55856487-55856506 | Msa0412440:three_prime_UTR | 10.0% |
| !! | GAAAATCAATTAGAAATAAA+GGG | - | chr3_2:55854445-55854464 | None:intergenic | 15.0% |
| !!! | TTTAGTTAAATTTTTCAACT+TGG | + | chr3_2:55854958-55854977 | Msa0412440:five_prime_UTR | 15.0% |
| !!! | ATATTTATTTAAGTTGTTGA+AGG | + | chr3_2:55855903-55855922 | Msa0412440:intron | 15.0% |
| !!! | TATTTATTTAAGTTGTTGAA+GGG | + | chr3_2:55855904-55855923 | Msa0412440:intron | 15.0% |
| !! | AATAAAGGGAAAAAACAAAA+GGG | - | chr3_2:55854431-55854450 | None:intergenic | 20.0% |
| !! | AAATAAAGGGAAAAAACAAA+AGG | - | chr3_2:55854432-55854451 | None:intergenic | 20.0% |
| !! | GGAAAATCAATTAGAAATAA+AGG | - | chr3_2:55854446-55854465 | None:intergenic | 20.0% |
| !! | CTTGAATATCAATATCAATT+TGG | + | chr3_2:55854663-55854682 | Msa0412440:five_prime_UTR | 20.0% |
| !!! | CAATAAGCATTTTTTTCAAA+AGG | - | chr3_2:55854796-55854815 | None:intergenic | 20.0% |
| !! | ATTTATCTTTCATATTGTTG+TGG | + | chr3_2:55854822-55854841 | Msa0412440:five_prime_UTR | 20.0% |
| !! | TATATGATATTTCAAAACAG+AGG | - | chr3_2:55854886-55854905 | None:intergenic | 20.0% |
| !! | CATAAACTTTAAATTACATC+CGG | - | chr3_2:55855733-55855752 | None:intergenic | 20.0% |
| !! | GATTATGAAAATAATTTGAC+AGG | + | chr3_2:55855944-55855963 | Msa0412440:intron | 20.0% |
| !! | CAATATATTTACATAGAACT+TGG | - | chr3_2:55856576-55856595 | None:intergenic | 20.0% |
| ! | AAAGACACTGAATTTATGAA+GGG | - | chr3_2:55854361-55854380 | None:intergenic | 25.0% |
| ! | ATTCAAGACTATTACCTTAT+TGG | - | chr3_2:55854650-55854669 | None:intergenic | 25.0% |
| !! | TAGTTGGAATTTTGAACAAA+TGG | - | chr3_2:55855041-55855060 | None:intergenic | 25.0% |
| !! | TATGTGAAGATTTTACTGTT+TGG | + | chr3_2:55855530-55855549 | Msa0412440:intron | 25.0% |
| !! | GATTTTACTGTTTGGTTATT+TGG | + | chr3_2:55855538-55855557 | Msa0412440:intron | 25.0% |
| ! | TAAAGTTTATGTATGAACCT+AGG | + | chr3_2:55855742-55855761 | Msa0412440:intron | 25.0% |
| ! | ATATGTAGTTATTGAGAGTT+AGG | + | chr3_2:55855792-55855811 | Msa0412440:intron | 25.0% |
| ! | TACTTGTTCATAATCATGTT+TGG | - | chr3_2:55856207-55856226 | None:intergenic | 25.0% |
| ! | GAGTTATTATTAACTCCATA+AGG | - | chr3_2:55856318-55856337 | None:intergenic | 25.0% |
| ! | GGAGTTAATAATAACTCTTA+TGG | + | chr3_2:55856321-55856340 | Msa0412440:CDS | 25.0% |
| !! | TAGAACAAGTATCTTTTGTT+TGG | + | chr3_2:55856511-55856530 | Msa0412440:three_prime_UTR | 25.0% |
| GAAAGACACTGAATTTATGA+AGG | - | chr3_2:55854362-55854381 | None:intergenic | 30.0% | |
| !! | TCTTTCTGCTATTTCCAAAT+TGG | + | chr3_2:55854376-55854395 | Msa0412440:five_prime_UTR | 30.0% |
| !! | CTTTCTGCTATTTCCAAATT+GGG | + | chr3_2:55854377-55854396 | Msa0412440:five_prime_UTR | 30.0% |
| TTGAATGTGAAAACCCAATT+TGG | - | chr3_2:55854393-55854412 | None:intergenic | 30.0% | |
| ! | GGAAAAAACAAAAGGGTATA+AGG | - | chr3_2:55854424-55854443 | None:intergenic | 30.0% |
| !! | TCTAATTGATTTTCCCGTTT+AGG | + | chr3_2:55854451-55854470 | Msa0412440:five_prime_UTR | 30.0% |
| TTTATAGATCTTGCACAAGT+TGG | + | chr3_2:55854602-55854621 | Msa0412440:five_prime_UTR | 30.0% | |
| GTTATCTTATTGGACCAATA+AGG | + | chr3_2:55854633-55854652 | Msa0412440:five_prime_UTR | 30.0% | |
| AGATAAATGAAGAGAACCAA+AGG | - | chr3_2:55854859-55854878 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTGTGATGAAGT+GGG | + | chr3_2:55854977-55854996 | Msa0412440:exon | 30.0% |
| ATTCCAACTATACCAACAAT+TGG | + | chr3_2:55855051-55855070 | Msa0412440:CDS | 30.0% | |
| AAACCAATTGTTGGTATAGT+TGG | - | chr3_2:55855057-55855076 | None:intergenic | 30.0% | |
| !!! | CTATACCAACAATTGGTTTT+TGG | + | chr3_2:55855058-55855077 | Msa0412440:CDS | 30.0% |
| ATCTTCCAAAAACCAATTGT+TGG | - | chr3_2:55855066-55855085 | None:intergenic | 30.0% | |
| ATTGTAGCAATAGCATTAAC+AGG | + | chr3_2:55855084-55855103 | Msa0412440:CDS | 30.0% | |
| TGATGTGATGAATCAGTATA+AGG | + | chr3_2:55855226-55855245 | Msa0412440:CDS | 30.0% | |
| GATGAATCAGTATAAGGAAT+TGG | + | chr3_2:55855232-55855251 | Msa0412440:CDS | 30.0% | |
| GATGTTTGTAATATAGAAGC+TGG | + | chr3_2:55855260-55855279 | Msa0412440:CDS | 30.0% | |
| TTGTAATATAGAAGCTGGTT+TGG | + | chr3_2:55855265-55855284 | Msa0412440:CDS | 30.0% | |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr3_2:55855316-55855335 | Msa0412440:CDS | 30.0% |
| ATCTTACTTGTGTTCTTCTT+CGG | - | chr3_2:55855441-55855460 | None:intergenic | 30.0% | |
| ! | TTTTGTCAAAATCACGATGA+CGG | + | chr3_2:55855655-55855674 | Msa0412440:intron | 30.0% |
| ! | GAGAGTTAGGTATTTTCTAA+TGG | + | chr3_2:55855805-55855824 | Msa0412440:intron | 30.0% |
| !! | GGTATTTTCTAATGGTGTTA+AGG | + | chr3_2:55855813-55855832 | Msa0412440:intron | 30.0% |
| !! | ATTTGACAGGTTGTTTCTAT+TGG | + | chr3_2:55855957-55855976 | Msa0412440:intron | 30.0% |
| !! | TTTGACAGGTTGTTTCTATT+GGG | + | chr3_2:55855958-55855977 | Msa0412440:intron | 30.0% |
| ! | AAAAGTATGGAAAAGGTGAT+TGG | + | chr3_2:55855986-55856005 | Msa0412440:CDS | 30.0% |
| ! | TGATGAAATATTTCTGAGCA+TGG | - | chr3_2:55856065-55856084 | None:intergenic | 30.0% |
| TATTTCATCAGACAACTTTC+AGG | + | chr3_2:55856075-55856094 | Msa0412440:CDS | 30.0% | |
| ! | ATGAAAACTTGTTCATGTGA+TGG | - | chr3_2:55856291-55856310 | None:intergenic | 30.0% |
| AAATAAGAAGACTCATGAAG+AGG | - | chr3_2:55856381-55856400 | None:intergenic | 30.0% | |
| !! | CTTCATGAGTCTTCTTATTT+TGG | + | chr3_2:55856381-55856400 | Msa0412440:CDS | 30.0% |
| TTAGTTAGTTATTGCCTTCT+TGG | + | chr3_2:55856612-55856631 | Msa0412440:three_prime_UTR | 30.0% | |
| ATCAAGTTCATATACCAAGA+AGG | - | chr3_2:55856629-55856648 | None:intergenic | 30.0% | |
| AACAACCTTAAACCTATGAA+AGG | + | chr3_2:55856681-55856700 | Msa0412440:three_prime_UTR | 30.0% | |
| TTTCACCTTTCATAGGTTTA+AGG | - | chr3_2:55856689-55856708 | None:intergenic | 30.0% | |
| TCTGTAACTTCTGATATTGA+AGG | + | chr3_2:55856727-55856746 | Msa0412440:three_prime_UTR | 30.0% | |
| AACTTATGCATAGCCTAAAC+GGG | - | chr3_2:55854467-55854486 | None:intergenic | 35.0% | |
| CAACTTATGCATAGCCTAAA+CGG | - | chr3_2:55854468-55854487 | None:intergenic | 35.0% | |
| !! | GGTTTCTAGGGTTATCTTAT+TGG | + | chr3_2:55854623-55854642 | Msa0412440:five_prime_UTR | 35.0% |
| TAAATGAAGAGAACCAAAGG+TGG | - | chr3_2:55854856-55854875 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTTTTGTGATGAAG+TGG | + | chr3_2:55854976-55854995 | Msa0412440:exon | 35.0% |
| ! | TTTTGTGATGAAGTGGGAAA+TGG | + | chr3_2:55854983-55855002 | Msa0412440:exon | 35.0% |
| TTTGAACAAATGGTGCATGA+GGG | - | chr3_2:55855031-55855050 | None:intergenic | 35.0% | |
| ! | TTTTGAACAAATGGTGCATG+AGG | - | chr3_2:55855032-55855051 | None:intergenic | 35.0% |
| ! | TCAAACAATTTGTTCTCTGC+AGG | - | chr3_2:55855125-55855144 | None:intergenic | 35.0% |
| TGCTCTTGCAGTTTATGATA+AGG | + | chr3_2:55855148-55855167 | Msa0412440:CDS | 35.0% | |
| AGTTTATGATAAGGATACGC+CGG | + | chr3_2:55855157-55855176 | Msa0412440:CDS | 35.0% | |
| GTAGTACTATAACCAGGAAT+TGG | - | chr3_2:55855293-55855312 | None:intergenic | 35.0% | |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr3_2:55855315-55855334 | Msa0412440:CDS | 35.0% |
| ! | TTCACCCAATCTAAGGTAAA+AGG | - | chr3_2:55855323-55855342 | None:intergenic | 35.0% |
| AGAAGAATTCACCCAATCTA+AGG | - | chr3_2:55855330-55855349 | None:intergenic | 35.0% | |
| TTAGATTGGGTGAATTCTTC+TGG | + | chr3_2:55855329-55855348 | Msa0412440:CDS | 35.0% | |
| ! | GTGAATTCTTCTGGTTATGA+TGG | + | chr3_2:55855338-55855357 | Msa0412440:CDS | 35.0% |
| !!! | TCTGGTTATGATGGTTTTAG+AGG | + | chr3_2:55855347-55855366 | Msa0412440:CDS | 35.0% |
| !!! | GATGGTTTTAGAGGAATTAC+TGG | + | chr3_2:55855356-55855375 | Msa0412440:CDS | 35.0% |
| AACTGATATCAGTGCATCTT+TGG | + | chr3_2:55855581-55855600 | Msa0412440:intron | 35.0% | |
| GTTTGGATTGACGGTTAATT+TGG | - | chr3_2:55855700-55855719 | None:intergenic | 35.0% | |
| ACTTTAAATTACATCCGGTC+AGG | - | chr3_2:55855728-55855747 | None:intergenic | 35.0% | |
| TTATGTATGAACCTAGGAGT+TGG | + | chr3_2:55855748-55855767 | Msa0412440:intron | 35.0% | |
| CTATTGGGTCTGAAAAAGTA+TGG | + | chr3_2:55855973-55855992 | Msa0412440:CDS | 35.0% | |
| ! | GGTCTGAAAAAGTATGGAAA+AGG | + | chr3_2:55855979-55855998 | Msa0412440:CDS | 35.0% |
| GTGATTGGAGAAACATATCA+AGG | + | chr3_2:55856001-55856020 | Msa0412440:CDS | 35.0% | |
| ! | CAAGTTTTCATGTCTCCTTA+TGG | + | chr3_2:55856300-55856319 | Msa0412440:CDS | 35.0% |
| ! | AAAACCATGTTTTGTGTCTG+AGG | - | chr3_2:55856408-55856427 | None:intergenic | 35.0% |
| GTTGTTGAGAAGATTGCATT+TGG | - | chr3_2:55856431-55856450 | None:intergenic | 35.0% | |
| ATTCACATGCATGATGTTGT+TGG | + | chr3_2:55856454-55856473 | Msa0412440:exon | 35.0% | |
| !! | TCTTGCACAAGTTGGTTTCT+AGG | + | chr3_2:55854610-55854629 | Msa0412440:five_prime_UTR | 40.0% |
| !! | CTTGCACAAGTTGGTTTCTA+GGG | + | chr3_2:55854611-55854630 | Msa0412440:five_prime_UTR | 40.0% |
| TGTGGTAAATTCTCCACCTT+TGG | + | chr3_2:55854840-55854859 | Msa0412440:five_prime_UTR | 40.0% | |
| ! | GCATTAACAGGAGCACAAAA+TGG | + | chr3_2:55855096-55855115 | Msa0412440:CDS | 40.0% |
| CATCAACAACACTCTTTCCA+GGG | - | chr3_2:55855211-55855230 | None:intergenic | 40.0% | |
| ACATCAACAACACTCTTTCC+AGG | - | chr3_2:55855212-55855231 | None:intergenic | 40.0% | |
| GAAGCAGTAGTACTATAACC+AGG | - | chr3_2:55855299-55855318 | None:intergenic | 40.0% | |
| AGAGGAATTACTGGAAAGAG+AGG | + | chr3_2:55855365-55855384 | Msa0412440:CDS | 40.0% | |
| ATTTCACTTCACCAACTCCT+AGG | - | chr3_2:55855762-55855781 | None:intergenic | 40.0% | |
| CAAGGAACTTTGTGATCACT+AGG | + | chr3_2:55856019-55856038 | Msa0412440:CDS | 40.0% | |
| TTCATCAGACAACTTTCAGG+AGG | + | chr3_2:55856078-55856097 | Msa0412440:CDS | 40.0% | |
| !! | CTCTTGGTTTCTTCTGAAGT+TGG | - | chr3_2:55856174-55856193 | None:intergenic | 40.0% |
| ! | GTTTGGTGAAGTTGATCTCT+TGG | - | chr3_2:55856190-55856209 | None:intergenic | 40.0% |
| CTGAAAATGCATCTCAGAAG+TGG | - | chr3_2:55856244-55856263 | None:intergenic | 40.0% | |
| TTGAATGCTGTCATAGTAGC+TGG | - | chr3_2:55856267-55856286 | None:intergenic | 40.0% | |
| !! | TGCATGATGTTGTTGGTGAT+TGG | + | chr3_2:55856461-55856480 | Msa0412440:exon | 40.0% |
| TTGCAGCTTTCACCTTTCAT+AGG | - | chr3_2:55856696-55856715 | None:intergenic | 40.0% | |
| TATGAAAGGTGAAAGCTGCA+AGG | + | chr3_2:55856695-55856714 | Msa0412440:three_prime_UTR | 40.0% | |
| ATGATAAGGATACGCCGGAT+CGG | + | chr3_2:55855162-55855181 | Msa0412440:CDS | 45.0% | |
| TTCTGGTAGATCTCCTGATC+AGG | + | chr3_2:55855391-55855410 | Msa0412440:CDS | 45.0% | |
| GTAGATCTCCTGATCAGGAA+AGG | + | chr3_2:55855396-55855415 | Msa0412440:CDS | 45.0% | |
| CCTTTCTTCCTTTCCTGATC+AGG | - | chr3_2:55855407-55855426 | None:intergenic | 45.0% | |
| CCTGATCAGGAAAGGAAGAA+AGG | + | chr3_2:55855404-55855423 | Msa0412440:CDS | 45.0% | |
| ! | AAAGGAAGAAAGGTGTGCCA+TGG | + | chr3_2:55855414-55855433 | Msa0412440:CDS | 45.0% |
| TTGTGTTCTTCTTCGGTCCA+TGG | - | chr3_2:55855434-55855453 | None:intergenic | 45.0% | |
| CAGGTGCATGTTTGGATTGA+CGG | - | chr3_2:55855709-55855728 | None:intergenic | 45.0% | |
| AATCCAAACATGCACCTGAC+CGG | + | chr3_2:55855711-55855730 | Msa0412440:intron | 45.0% | |
| TGGACCTCAGACACAAAACA+TGG | + | chr3_2:55856401-55856420 | Msa0412440:CDS | 45.0% | |
| GGTGCATGAGGGTGAGAATT+TGG | - | chr3_2:55855020-55855039 | None:intergenic | 50.0% | |
| AAGGTAGCTGCAATGATCCC+TGG | + | chr3_2:55855191-55855210 | Msa0412440:CDS | 50.0% | |
| !! | GCTGGTTTGGTTCCAATTCC+TGG | + | chr3_2:55855278-55855297 | Msa0412440:CDS | 50.0% |
| ACTGGAAAGAGAGGCTCTTC+TGG | + | chr3_2:55855374-55855393 | Msa0412440:CDS | 50.0% | |
| ! | GCATGGCTAGCTACTTGTGT+TGG | - | chr3_2:55856048-55856067 | None:intergenic | 50.0% |
| ! | CTCAGAAGTGGTGTTAGCAG+TGG | - | chr3_2:55856232-55856251 | None:intergenic | 50.0% |
| ATAAGGATACGCCGGATCGG+TGG | + | chr3_2:55855165-55855184 | Msa0412440:CDS | 55.0% | |
| GCTACCTTATGCCACCGATC+CGG | - | chr3_2:55855179-55855198 | None:intergenic | 55.0% | |
| CATCCGGTCAGGTGCATGTT+TGG | - | chr3_2:55855717-55855736 | None:intergenic | 55.0% | |
| TACGCCGGATCGGTGGCATA+AGG | + | chr3_2:55855172-55855191 | Msa0412440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 55854316 | 55856805 | 55854316 | ID=Msa0412440;Name=Msa0412440 |
| chr3_2 | mRNA | 55854316 | 55856805 | 55854316 | ID=Msa0412440-mRNA-1;Parent=Msa0412440;Name=Msa0412440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=674|1|1|1|1|1|2|338|321 |
| chr3_2 | exon | 55854316 | 55855453 | 55854316 | ID=Msa0412440-mRNA-1:exon:11332;Parent=Msa0412440-mRNA-1 |
| chr3_2 | exon | 55855966 | 55856805 | 55855966 | ID=Msa0412440-mRNA-1:exon:11333;Parent=Msa0412440-mRNA-1 |
| chr3_2 | five_prime_UTR | 55854316 | 55854989 | 55854316 | ID=Msa0412440-mRNA-1:five_prime_utr;Parent=Msa0412440-mRNA-1 |
| chr3_2 | CDS | 55854990 | 55855453 | 55854990 | ID=Msa0412440-mRNA-1:cds;Parent=Msa0412440-mRNA-1 |
| chr3_2 | CDS | 55855966 | 55856467 | 55855966 | ID=Msa0412440-mRNA-1:cds;Parent=Msa0412440-mRNA-1 |
| chr3_2 | three_prime_UTR | 55856468 | 55856805 | 55856468 | ID=Msa0412440-mRNA-1:three_prime_utr;Parent=Msa0412440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
