AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750430 MtrunA17_Chr5g0418911 98.529 68 1 0 1 68 299 366 7.48e-43 141
Msa0750430 MtrunA17_Chr8g0369381 42.857 63 36 0 2 64 94 156 1.05e-13 61.6
Msa0750430 MtrunA17_Chr1g0212851 44.776 67 34 1 2 68 384 447 8.52e-13 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750430 AT1G26520.1 73.016 63 17 0 1 63 308 370 9.21e-29 105
Msa0750430 AT1G15730.1 50.794 63 31 0 2 64 383 445 7.45e-16 70.1
Msa0750430 AT1G80480.1 46.032 63 34 0 2 64 379 441 7.99e-14 64.3

Find 53 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAAAGTAACATGTTAAT+TGG 0.083650 5_2:+3832972 None:intergenic
AATAAATTAACACACTAATT+TGG 0.196004 5_2:+3833240 None:intergenic
ATTAAAGTAACATGTTAATT+GGG 0.273975 5_2:+3832973 None:intergenic
CTACGAGTGTGTTAATGTTA+TGG 0.302882 5_2:+3836483 None:intergenic
TATGGCTAGAGGAGATTCTT+TGG 0.317773 5_2:-3835797 Msa0750430:five_prime_UTR
TGATGAATTGCATACTTTGC+AGG 0.320221 5_2:-3835715 Msa0750430:intron
ATGAATAAGATAGTATTTAT+AGG 0.327529 5_2:-3833468 Msa0750430:intron
AATTCTTAACAAGGTTGATT+TGG 0.330079 5_2:-3836552 Msa0750430:five_prime_UTR
TTGGGAGAAGAAATATGATA+TGG 0.330619 5_2:-3835778 Msa0750430:exon
GAGCTTTCAAGCCATTGATT+AGG 0.361287 5_2:+3833342 None:intergenic
AAACAAATACGCAGCCTAAC+AGG 0.366244 5_2:+3833313 None:intergenic
TCTCCAACACCCACTCTTGT+TGG 0.367777 5_2:-3832889 Msa0750430:three_prime_UTR
GCTATCTGAAAATATGCTTC+AGG 0.372809 5_2:+3836927 None:intergenic
CGCGTCCTACACTTTGGAAA+TGG 0.373940 5_2:-3832854 Msa0750430:three_prime_UTR
AACCATGGCAGACTCGTATA+TGG 0.384207 5_2:-3835815 Msa0750430:intron
TTGGTATCTGCAGAAGGCTC+TGG 0.429405 5_2:-3836533 Msa0750430:five_prime_UTR
AGTGGAAGAAAGAAGAAAAC+AGG 0.433205 5_2:-3833491 Msa0750430:CDS
ATGGCTAGAGGAGATTCTTT+GGG 0.440901 5_2:-3835796 Msa0750430:five_prime_UTR
TCCTGTCTCACAGATGCATA+TGG 0.462060 5_2:+3836222 None:intergenic
GAAAGCTCTTGCAACCTGTT+AGG 0.464002 5_2:-3833327 Msa0750430:exon
AACTCAACATTGATGAATCA+AGG 0.464542 5_2:+3833002 None:intergenic
AAAGAAGATGTCCTAATCAA+TGG 0.473604 5_2:-3833353 Msa0750430:CDS
TGCGTATTTGTTTCCTTGTG+TGG 0.476019 5_2:-3833303 Msa0750430:three_prime_UTR
AGCCACGGTGCTCCTTGAGC+TGG 0.477134 5_2:+3836961 None:intergenic
GTAGTGTTGTGTTAGTTACT+AGG 0.479845 5_2:-3833189 Msa0750430:three_prime_UTR
TCTTTCTTCCACTTTCGAGC+AGG 0.486547 5_2:+3833501 None:intergenic
AATTGTGTTTCTACCGAAGT+AGG 0.488440 5_2:-3837009 None:intergenic
GCGTATTTGTTTCCTTGTGT+GGG 0.493778 5_2:-3833302 Msa0750430:three_prime_UTR
TTAAAGTAACATGTTAATTG+GGG 0.496983 5_2:+3832974 None:intergenic
AGATCGTTCCTGCTCGAAAG+TGG 0.500025 5_2:-3833509 Msa0750430:CDS
ACCATATGCATCTGTGAGAC+AGG 0.503064 5_2:-3836223 Msa0750430:five_prime_UTR
TCAATGCGCGTCCTACACTT+TGG 0.508215 5_2:-3832860 Msa0750430:three_prime_UTR
AGGAACAGTTGATCTTGATA+AGG 0.543424 5_2:-3836203 Msa0750430:intron
AAATGTTCGCTTCCAGCTCA+AGG 0.553773 5_2:-3836973 Msa0750430:five_prime_UTR
TTGATTTAAACCAACAAGAG+TGG 0.565582 5_2:+3832879 None:intergenic
TGGTTGAATCTCGCAATCAT+CGG 0.566053 5_2:+3833260 None:intergenic
AGAAGGCTCTGGAGCTCTAG+AGG 0.581340 5_2:-3836522 Msa0750430:five_prime_UTR
CATTTAAGACTCCTTTGCAA+CGG 0.583923 5_2:+3835748 None:intergenic
GTTGATTTGGTATCTGCAGA+AGG 0.585096 5_2:-3836539 Msa0750430:five_prime_UTR
TGATTTAAACCAACAAGAGT+GGG 0.591681 5_2:+3832880 None:intergenic
GGACATTGTAATTCTTAACA+AGG 0.607377 5_2:-3836561 Msa0750430:five_prime_UTR
AAACCAACAAGAGTGGGTGT+TGG 0.608339 5_2:+3832886 None:intergenic
TTGGCATCTACTACCTACTT+CGG 0.613631 5_2:+3836996 None:intergenic
AAGTTCCATTTCCAAAGTGT+AGG 0.615904 5_2:+3832849 None:intergenic
ATGGATGTATACCGTTGCAA+AGG 0.617207 5_2:-3835759 Msa0750430:CDS
CTGCAGTATCGTAAGCGTGG+CGG 0.624449 5_2:+3836411 None:intergenic
GCAGACTCGTATATGGCTAG+AGG 0.641181 5_2:-3835808 Msa0750430:intron
CAGGAAATGAAGATGAGCCA+CGG 0.651825 5_2:+3836946 None:intergenic
AGCTCTAGAGGAACTCGAGG+AGG 0.659807 5_2:-3836510 Msa0750430:five_prime_UTR
TTACTGCAGTATCGTAAGCG+TGG 0.673945 5_2:+3836408 None:intergenic
TGGAGCTCTAGAGGAACTCG+AGG 0.681621 5_2:-3836513 Msa0750430:five_prime_UTR
TTAATATTTATACCCACACA+AGG 0.684499 5_2:+3833290 None:intergenic
TTCCAGCTCAAGGAGCACCG+TGG 0.718846 5_2:-3836963 Msa0750430:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAACTTTTATATTTTGAAA+AGG - chr5_2:3835880-3835899 Msa0750430:intron 10.0%
!!! TTTTTTTTATAGACAAATTT+TGG - chr5_2:3836588-3836607 Msa0750430:intron 10.0%
!!! ATTGTTTGTTATATATTAAC+TGG - chr5_2:3832913-3832932 Msa0750430:three_prime_UTR 15.0%
!!! TATTTTATATGTTTAAACCA+TGG - chr5_2:3833977-3833996 Msa0750430:intron 15.0%
!! TATTTAGTGTACTATTTATA+AGG - chr5_2:3834218-3834237 Msa0750430:intron 15.0%
!!! AATTAATTCATTTGTTGTTT+GGG - chr5_2:3834348-3834367 Msa0750430:intron 15.0%
!! TGAGATGTTTATAAAAATAT+TGG - chr5_2:3835149-3835168 Msa0750430:intron 15.0%
!!! TTAAAAAAAACAGAATTTTC+AGG + chr5_2:3835378-3835397 None:intergenic 15.0%
!! TAAATACTATCTTAGAATTT+GGG + chr5_2:3835418-3835437 None:intergenic 15.0%
!! TTTAGATAAATTAGACATTA+TGG - chr5_2:3835813-3835832 Msa0750430:intron 15.0%
!! TTAGATAAATTAGACATTAT+GGG - chr5_2:3835814-3835833 Msa0750430:intron 15.0%
!! TAAATCATTTGATTGATATT+TGG - chr5_2:3835951-3835970 Msa0750430:intron 15.0%
!! ATCAAAACTCAAATATTATA+TGG + chr5_2:3836227-3836246 None:intergenic 15.0%
!! ATGAATAAGATAGTATTTAT+AGG - chr5_2:3836339-3836358 Msa0750430:intron 15.0%
!!! ATGTTTATTTTTTGATTAAC+AGG - chr5_2:3836421-3836440 Msa0750430:five_prime_UTR 15.0%
!! AATAAATTAACACACTAATT+TGG + chr5_2:3836570-3836589 None:intergenic 15.0%
!! ATTAAAGTAACATGTTAATT+GGG + chr5_2:3836837-3836856 None:intergenic 15.0%
!! AATTAAAGTAACATGTTAAT+TGG + chr5_2:3836838-3836857 None:intergenic 15.0%
!!! CTTCTATATCTTTTTTTTTG+TGG + chr5_2:3833003-3833022 None:intergenic 20.0%
!!! CAATTAATTCATTTGTTGTT+TGG - chr5_2:3834347-3834366 Msa0750430:intron 20.0%
!!! GCTATATGTTGATTTTAATT+AGG - chr5_2:3834673-3834692 Msa0750430:intron 20.0%
!!! TTTGAAGTTTTAGTAAATGT+AGG - chr5_2:3835091-3835110 Msa0750430:intron 20.0%
!! TGTTTATAAAAATATTGGCA+TGG - chr5_2:3835154-3835173 Msa0750430:intron 20.0%
!!! TTTGTTTTGAGAGTTTATAT+TGG - chr5_2:3835304-3835323 Msa0750430:intron 20.0%
!! CCTGAAAAACATTTATAAAT+CGG - chr5_2:3835340-3835359 Msa0750430:intron 20.0%
!! AAATACTATCTTAGAATTTG+GGG + chr5_2:3835417-3835436 None:intergenic 20.0%
!! CTAAATACTATCTTAGAATT+TGG + chr5_2:3835419-3835438 None:intergenic 20.0%
!!! AAGATTCTAAAGTTACTAAA+TGG + chr5_2:3835761-3835780 None:intergenic 20.0%
!!! TGTCTAATTTATCTAAAACT+TGG + chr5_2:3835810-3835829 None:intergenic 20.0%
!! ATTTAATCTTGTGGTTTATT+TGG - chr5_2:3835838-3835857 Msa0750430:intron 20.0%
!! ATTTATTTCACTATTATCGT+CGG + chr5_2:3836009-3836028 None:intergenic 20.0%
!! AACTCAAATATTATATGGAA+GGG + chr5_2:3836222-3836241 None:intergenic 20.0%
!! AAACTCAAATATTATATGGA+AGG + chr5_2:3836223-3836242 None:intergenic 20.0%
!!! AGTACTTATGTTAGTTTTTA+AGG - chr5_2:3836666-3836685 Msa0750430:intron 20.0%
!!! AATAACTTTTAAGAGGTTTA+GGG + chr5_2:3836705-3836724 None:intergenic 20.0%
!!! AAATAACTTTTAAGAGGTTT+AGG + chr5_2:3836706-3836725 None:intergenic 20.0%
!!! CATTACAAATAACTTTTAAG+AGG + chr5_2:3836712-3836731 None:intergenic 20.0%
!! TTAAAGTAACATGTTAATTG+GGG + chr5_2:3836836-3836855 None:intergenic 20.0%
!! ATATTTTCAGATAGCATTTG+CGG - chr5_2:3832888-3832907 Msa0750430:three_prime_UTR 25.0%
! GACATCAATTTAATGAGAAA+AGG + chr5_2:3832953-3832972 None:intergenic 25.0%
!! AATTCTTAACAAGGTTGATT+TGG - chr5_2:3833255-3833274 Msa0750430:three_prime_UTR 25.0%
! TACTTTATTAGAAGCTATAC+AGG + chr5_2:3833701-3833720 None:intergenic 25.0%
! TGCATTTAGTATTAGGAAAA+TGG - chr5_2:3833757-3833776 Msa0750430:intron 25.0%
! AGTTATAACAGAAAAGCTAA+AGG + chr5_2:3834411-3834430 None:intergenic 25.0%
! AATTCTGTTAGAATGATTCT+CGG - chr5_2:3834440-3834459 Msa0750430:intron 25.0%
! TCTTTAATTAGAGATGAATC+TGG + chr5_2:3834770-3834789 None:intergenic 25.0%
! TTATAAAAATATTGGCATGG+TGG - chr5_2:3835157-3835176 Msa0750430:intron 25.0%
! ACTATCTATTCTTACACATA+TGG + chr5_2:3835275-3835294 None:intergenic 25.0%
!! CCGATTTATAAATGTTTTTC+AGG + chr5_2:3835343-3835362 None:intergenic 25.0%
! GAAAAACATTTATAAATCGG+AGG - chr5_2:3835343-3835362 Msa0750430:intron 25.0%
! AGTATTTAGACCTTAGTTAT+AGG - chr5_2:3835430-3835449 Msa0750430:intron 25.0%
! GTATTTAGACCTTAGTTATA+GGG - chr5_2:3835431-3835450 Msa0750430:intron 25.0%
! ATGCTTCAAATGTAAAATCT+TGG - chr5_2:3835465-3835484 Msa0750430:intron 25.0%
! TGCTTCAAATGTAAAATCTT+GGG - chr5_2:3835466-3835485 Msa0750430:intron 25.0%
! AGTCTTCATTAGATGTAATA+TGG - chr5_2:3835509-3835528 Msa0750430:intron 25.0%
!! CTAGTAACACTTTAAAAATC+TGG - chr5_2:3835625-3835644 Msa0750430:intron 25.0%
!! TAACACTTTAAAAATCTGGT+TGG - chr5_2:3835629-3835648 Msa0750430:intron 25.0%
! ATTATGGGTATTTAATCTTG+TGG - chr5_2:3835829-3835848 Msa0750430:intron 25.0%
!! AGTTAGATGAAGTATCAATT+AGG - chr5_2:3835925-3835944 Msa0750430:intron 25.0%
! ACTCAAATATTATATGGAAG+GGG + chr5_2:3836221-3836240 None:intergenic 25.0%
! AGTATTTATAGGTAACATGA+CGG - chr5_2:3836350-3836369 Msa0750430:intron 25.0%
! TTAATATTTATACCCACACA+AGG + chr5_2:3836520-3836539 None:intergenic 25.0%
!!! TATGTTAGTTTTTAAGGTTC+TGG - chr5_2:3836672-3836691 Msa0750430:intron 25.0%
!!! ATGTTAGTTTTTAAGGTTCT+GGG - chr5_2:3836673-3836692 Msa0750430:intron 25.0%
! GATGAATCAAGGAAAAAATT+GGG + chr5_2:3836797-3836816 None:intergenic 25.0%
! TGATGAATCAAGGAAAAAAT+TGG + chr5_2:3836798-3836817 None:intergenic 25.0%
TAAATTATCAGCATAGACAG+GGG + chr5_2:3833094-3833113 None:intergenic 30.0%
CTAAATTATCAGCATAGACA+GGG + chr5_2:3833095-3833114 None:intergenic 30.0%
AAGAAATACTGTTACAGACT+AGG + chr5_2:3833164-3833183 None:intergenic 30.0%
ATACAACTCTATTGTGTGAA+AGG + chr5_2:3833193-3833212 None:intergenic 30.0%
GGACATTGTAATTCTTAACA+AGG - chr5_2:3833246-3833265 Msa0750430:three_prime_UTR 30.0%
ACTAAAAAGCTTCATGATAG+TGG - chr5_2:3833554-3833573 Msa0750430:intron 30.0%
ATCTACAGTAACATCATGAA+CGG + chr5_2:3833644-3833663 None:intergenic 30.0%
TTAGAAGCTATACAGGAAAA+AGG + chr5_2:3833694-3833713 None:intergenic 30.0%
TTGGGAGAAGAAATATGATA+TGG - chr5_2:3834029-3834048 Msa0750430:intron 30.0%
AATTAAGTTTGCATTCGCAT+TGG - chr5_2:3834170-3834189 Msa0750430:intron 30.0%
!!! TCTTTTTCAAACAGTAACAG+TGG + chr5_2:3834198-3834217 None:intergenic 30.0%
TTGTCAAGATTACTGAAGTA+TGG + chr5_2:3834252-3834271 None:intergenic 30.0%
GTTGTAGAATCTACAATCTA+GGG + chr5_2:3834328-3834347 None:intergenic 30.0%
TGTTGTAGAATCTACAATCT+AGG + chr5_2:3834329-3834348 None:intergenic 30.0%
TTGAAGGAATAGCTTAGTAT+AGG + chr5_2:3834645-3834664 None:intergenic 30.0%
TACTAAGCTATTCCTTCAAT+AGG - chr5_2:3834646-3834665 Msa0750430:intron 30.0%
CATATAGCAATACCTATTGA+AGG + chr5_2:3834661-3834680 None:intergenic 30.0%
TCAACTCTATTGCTAATTTC+TGG - chr5_2:3834714-3834733 Msa0750430:intron 30.0%
AGTATGCTAAAAGAGAAACA+AGG - chr5_2:3834799-3834818 Msa0750430:intron 30.0%
ATTTAGTCAAAAAGATCCCT+TGG - chr5_2:3834838-3834857 Msa0750430:intron 30.0%
AAATTACAAACCCTTATACG+AGG + chr5_2:3835057-3835076 None:intergenic 30.0%
!! AAAACAGAATTTTCAGGCAA+GGG + chr5_2:3835372-3835391 None:intergenic 30.0%
!! AAAAACAGAATTTTCAGGCA+AGG + chr5_2:3835373-3835392 None:intergenic 30.0%
AAATGTAAAATCTTGGGTGT+GGG - chr5_2:3835472-3835491 Msa0750430:intron 30.0%
AGTAGAGTAACAATTGAGTT+TGG - chr5_2:3835581-3835600 Msa0750430:intron 30.0%
! TTACTAGCTCTTGGAATTTA+GGG + chr5_2:3835612-3835631 None:intergenic 30.0%
! TTTAAAGTGTTACTAGCTCT+TGG + chr5_2:3835621-3835640 None:intergenic 30.0%
TTTAAAAATCTGGTTGGACA+TGG - chr5_2:3835635-3835654 Msa0750430:intron 30.0%
ACAAATATATCAGACGAAGA+GGG + chr5_2:3835711-3835730 None:intergenic 30.0%
AACAAATATATCAGACGAAG+AGG + chr5_2:3835712-3835731 None:intergenic 30.0%
TTTGGCAAAACAAAATCTTG+TGG - chr5_2:3835856-3835875 Msa0750430:intron 30.0%
ATCAAACCTAAAACCGAAAT+TGG + chr5_2:3836083-3836102 None:intergenic 30.0%
CTCAAATATTATATGGAAGG+GGG + chr5_2:3836220-3836239 None:intergenic 30.0%
GTATTTATAGGTAACATGAC+GGG - chr5_2:3836351-3836370 Msa0750430:intron 30.0%
AAAGAAGATGTCCTAATCAA+TGG - chr5_2:3836454-3836473 Msa0750430:five_prime_UTR 30.0%
AAAAAATTGGGAAGATGGTA+GGG + chr5_2:3836785-3836804 None:intergenic 30.0%
AACTCAACATTGATGAATCA+AGG + chr5_2:3836808-3836827 None:intergenic 30.0%
TGATTTAAACCAACAAGAGT+GGG + chr5_2:3836930-3836949 None:intergenic 30.0%
TTGATTTAAACCAACAAGAG+TGG + chr5_2:3836931-3836950 None:intergenic 30.0%
GCTATCTGAAAATATGCTTC+AGG + chr5_2:3832883-3832902 None:intergenic 35.0%
CCTAAATTATCAGCATAGAC+AGG + chr5_2:3833096-3833115 None:intergenic 35.0%
CCTGTCTATGCTGATAATTT+AGG - chr5_2:3833093-3833112 Msa0750430:three_prime_UTR 35.0%
TTATGGTACTTTACGAGTTG+TGG + chr5_2:3833134-3833153 None:intergenic 35.0%
ATACTGTTACAGACTAGGTA+GGG + chr5_2:3833159-3833178 None:intergenic 35.0%
AATACTGTTACAGACTAGGT+AGG + chr5_2:3833160-3833179 None:intergenic 35.0%
CAGCAACATTATTAGCACTT+TGG + chr5_2:3833217-3833236 None:intergenic 35.0%
! ATAATGTTGCTGCTTCTTTC+AGG - chr5_2:3833225-3833244 Msa0750430:three_prime_UTR 35.0%
CTACGAGTGTGTTAATGTTA+TGG + chr5_2:3833327-3833346 None:intergenic 35.0%
GCTGAAAAGAGAAACAAAAC+AGG + chr5_2:3833487-3833506 None:intergenic 35.0%
AGGAACAGTTGATCTTGATA+AGG - chr5_2:3833604-3833623 Msa0750430:intron 35.0%
TGCGTCATGCATTTAGTATT+AGG - chr5_2:3833750-3833769 Msa0750430:intron 35.0%
CATTTAAGTGAAGCAAAAGC+AGG + chr5_2:3833832-3833851 None:intergenic 35.0%
! CATTTAAGACTCCTTTGCAA+CGG + chr5_2:3834062-3834081 None:intergenic 35.0%
TGATGAATTGCATACTTTGC+AGG - chr5_2:3834092-3834111 Msa0750430:intron 35.0%
AATTGCCAAGTACCAAGTTA+TGG - chr5_2:3834285-3834304 Msa0750430:intron 35.0%
AAGTAGACAGAACCATAACT+TGG + chr5_2:3834300-3834319 None:intergenic 35.0%
TGCCAGATAATACAGTTAGA+CGG - chr5_2:3834560-3834579 Msa0750430:intron 35.0%
AACCGTCTAACTGTATTATC+TGG + chr5_2:3834565-3834584 None:intergenic 35.0%
TCATGCGCTATCAATTAACT+GGG + chr5_2:3835132-3835151 None:intergenic 35.0%
! CAATTTTGAACGTCTTCACA+TGG + chr5_2:3835247-3835266 None:intergenic 35.0%
CAAATGTAAAATCTTGGGTG+TGG - chr5_2:3835471-3835490 Msa0750430:intron 35.0%
! GTTACTAGCTCTTGGAATTT+AGG + chr5_2:3835613-3835632 None:intergenic 35.0%
GGAGAATGCTAATACATAGA+TGG + chr5_2:3835689-3835708 None:intergenic 35.0%
CAAATATATCAGACGAAGAG+GGG + chr5_2:3835710-3835729 None:intergenic 35.0%
AGTGGAAGAAAGAAGAAAAC+AGG - chr5_2:3836316-3836335 Msa0750430:intron 35.0%
GTAGTGTTGTGTTAGTTACT+AGG - chr5_2:3836618-3836637 Msa0750430:intron 35.0%
GAAAAAATTGGGAAGATGGT+AGG + chr5_2:3836786-3836805 None:intergenic 35.0%
CAAGGAAAAAATTGGGAAGA+TGG + chr5_2:3836790-3836809 None:intergenic 35.0%
AAGTTCCATTTCCAAAGTGT+AGG + chr5_2:3836961-3836980 None:intergenic 35.0%
TTGGCATCTACTACCTACTT+CGG + chr5_2:3832814-3832833 None:intergenic 40.0%
CATAGACAGGGGAAGTTATT+TGG + chr5_2:3833083-3833102 None:intergenic 40.0%
! ACAGACTAGGTAGGGTATTA+TGG + chr5_2:3833151-3833170 None:intergenic 40.0%
!! GTTGATTTGGTATCTGCAGA+AGG - chr5_2:3833268-3833287 Msa0750430:three_prime_UTR 40.0%
GAAACAAAACAGGTAAGCTG+CGG + chr5_2:3833477-3833496 None:intergenic 40.0%
AACAATGATTCCTGCTACCA+CGG - chr5_2:3833792-3833811 Msa0750430:intron 40.0%
! AGAACAAAGCATTCTCTGCT+AGG + chr5_2:3833896-3833915 None:intergenic 40.0%
TATGGCTAGAGGAGATTCTT+TGG - chr5_2:3834010-3834029 Msa0750430:intron 40.0%
ATGGCTAGAGGAGATTCTTT+GGG - chr5_2:3834011-3834030 Msa0750430:intron 40.0%
ATGGATGTATACCGTTGCAA+AGG - chr5_2:3834048-3834067 Msa0750430:intron 40.0%
CAGAACCATAACTTGGTACT+TGG + chr5_2:3834293-3834312 None:intergenic 40.0%
! GATTCTCGGTTAGTTACATG+AGG - chr5_2:3834454-3834473 Msa0750430:intron 40.0%
GAGGTGAAGAGTCTATCTAT+AGG - chr5_2:3834473-3834492 Msa0750430:intron 40.0%
ATACAGTTAGACGGTTACAC+AGG - chr5_2:3834569-3834588 Msa0750430:intron 40.0%
TACAGTTAGACGGTTACACA+GGG - chr5_2:3834570-3834589 Msa0750430:intron 40.0%
TGTGATCAGAACGATCACAA+AGG + chr5_2:3834617-3834636 None:intergenic 40.0%
AACATCCTCTTGCAAATGCA+AGG - chr5_2:3834925-3834944 Msa0750430:intron 40.0%
TCTATCAAACTCTCATCACG+AGG + chr5_2:3834997-3835016 None:intergenic 40.0%
GATGAGAGTTTGATAGAGCA+AGG - chr5_2:3835000-3835019 Msa0750430:intron 40.0%
TAGTCACACACCTCGTATAA+GGG - chr5_2:3835044-3835063 Msa0750430:intron 40.0%
CTCATGCGCTATCAATTAAC+TGG + chr5_2:3835133-3835152 None:intergenic 40.0%
CTTAGTTATAGGGTCACTCA+GGG - chr5_2:3835441-3835460 Msa0750430:intron 40.0%
ACTCTACTTATAACCAGCCA+AGG + chr5_2:3835569-3835588 None:intergenic 40.0%
! AGCTCTTGGAATTTAGGGTT+TGG + chr5_2:3835607-3835626 None:intergenic 40.0%
TGAAATAAATGCAGCCCACT+TGG - chr5_2:3836019-3836038 Msa0750430:intron 40.0%
GAAATAAATGCAGCCCACTT+GGG - chr5_2:3836020-3836039 Msa0750430:intron 40.0%
! AGTGTGCCAATTTCGGTTTT+AGG - chr5_2:3836074-3836093 Msa0750430:intron 40.0%
ATTCTACCCAGTGCCAATTT+CGG - chr5_2:3836101-3836120 Msa0750430:intron 40.0%
ACCATTCATTGCTGAAATCC+TGG - chr5_2:3836253-3836272 Msa0750430:five_prime_UTR 40.0%
! GAGCTTTCAAGCCATTGATT+AGG + chr5_2:3836468-3836487 None:intergenic 40.0%
AAACAAATACGCAGCCTAAC+AGG + chr5_2:3836497-3836516 None:intergenic 40.0%
TGCGTATTTGTTTCCTTGTG+TGG - chr5_2:3836504-3836523 Msa0750430:five_prime_UTR 40.0%
GCGTATTTGTTTCCTTGTGT+GGG - chr5_2:3836505-3836524 Msa0750430:five_prime_UTR 40.0%
TGGTTGAATCTCGCAATCAT+CGG + chr5_2:3836550-3836569 None:intergenic 40.0%
! GAGCTGGAAGCGAACATTTT+TGG + chr5_2:3832833-3832852 None:intergenic 45.0%
AAATGTTCGCTTCCAGCTCA+AGG - chr5_2:3832834-3832853 Msa0750430:three_prime_UTR 45.0%
CAGGAAATGAAGATGAGCCA+CGG + chr5_2:3832864-3832883 None:intergenic 45.0%
TTACTGCAGTATCGTAAGCG+TGG + chr5_2:3833402-3833421 None:intergenic 45.0%
ACCATATGCATCTGTGAGAC+AGG - chr5_2:3833584-3833603 Msa0750430:intron 45.0%
TCCTGTCTCACAGATGCATA+TGG + chr5_2:3833588-3833607 None:intergenic 45.0%
ACAATGATTCCTGCTACCAC+GGG - chr5_2:3833793-3833812 Msa0750430:intron 45.0%
GCATTCTCTGCTAGGCATTA+CGG + chr5_2:3833888-3833907 None:intergenic 45.0%
AACCATGGCAGACTCGTATA+TGG - chr5_2:3833992-3834011 Msa0750430:intron 45.0%
ATAAGATCCGTCTTCACCAG+TGG - chr5_2:3834116-3834135 Msa0750430:intron 45.0%
AATTTGACATGCCTGACCAC+TGG + chr5_2:3834135-3834154 None:intergenic 45.0%
AGATCCCTTGGCATAACTGT+TGG - chr5_2:3834850-3834869 Msa0750430:intron 45.0%
GACTCCAACAGTTATGCCAA+GGG + chr5_2:3834857-3834876 None:intergenic 45.0%
TGACTCCAACAGTTATGCCA+AGG + chr5_2:3834858-3834877 None:intergenic 45.0%
CCTTACCTTGCATTTGCAAG+AGG + chr5_2:3834933-3834952 None:intergenic 45.0%
CCTCTTGCAAATGCAAGGTA+AGG - chr5_2:3834930-3834949 Msa0750430:intron 45.0%
GTGTGCAATATATCCGTGAC+AGG - chr5_2:3834955-3834974 Msa0750430:intron 45.0%
AGGTGTGTGACTAGAATGTG+TGG + chr5_2:3835037-3835056 None:intergenic 45.0%
CTAGTCACACACCTCGTATA+AGG - chr5_2:3835043-3835062 Msa0750430:intron 45.0%
AAATATTGGCATGGTGGCAG+TGG - chr5_2:3835163-3835182 Msa0750430:intron 45.0%
!! GGCAGTGGTGTTACTTTGTT+AGG - chr5_2:3835178-3835197 Msa0750430:intron 45.0%
!! ACAGAATTTTCAGGCAAGGG+AGG + chr5_2:3835369-3835388 None:intergenic 45.0%
CCTGAGTGACCCTATAACTA+AGG + chr5_2:3835443-3835462 None:intergenic 45.0%
CCTTAGTTATAGGGTCACTC+AGG - chr5_2:3835440-3835459 Msa0750430:intron 45.0%
TGTAAAATCTTGGGTGTGGG+AGG - chr5_2:3835475-3835494 Msa0750430:intron 45.0%
CTTATAACCAGCCAAGGCAA+GGG + chr5_2:3835563-3835582 None:intergenic 45.0%
ACTTATAACCAGCCAAGGCA+AGG + chr5_2:3835564-3835583 None:intergenic 45.0%
ACCTTGGAGTGTGCCAATTT+CGG - chr5_2:3836067-3836086 Msa0750430:intron 45.0%
CCAAAATAGCCCACCGAAAT+TGG + chr5_2:3836117-3836136 None:intergenic 45.0%
!!! CCAATTTCGGTGGGCTATTT+TGG - chr5_2:3836114-3836133 Msa0750430:intron 45.0%
GCCAGGATTTCAGCAATGAA+TGG + chr5_2:3836257-3836276 None:intergenic 45.0%
TTCATTGCTGAAATCCTGGC+AGG - chr5_2:3836257-3836276 Msa0750430:five_prime_UTR 45.0%
TCTTTCTTCCACTTTCGAGC+AGG + chr5_2:3836309-3836328 None:intergenic 45.0%
GAAAGCTCTTGCAACCTGTT+AGG - chr5_2:3836480-3836499 Msa0750430:five_prime_UTR 45.0%
AAACCAACAAGAGTGGGTGT+TGG + chr5_2:3836924-3836943 None:intergenic 45.0%
TTGGTATCTGCAGAAGGCTC+TGG - chr5_2:3833274-3833293 Msa0750430:three_prime_UTR 50.0%
TAAGCTGCGGTCATGAAGGT+GGG + chr5_2:3833464-3833483 None:intergenic 50.0%
CAATGATTCCTGCTACCACG+GGG - chr5_2:3833794-3833813 Msa0750430:intron 50.0%
AATTTATGCCCCGTGGTAGC+AGG + chr5_2:3833805-3833824 None:intergenic 50.0%
AGGACACAATTTATGCCCCG+TGG + chr5_2:3833812-3833831 None:intergenic 50.0%
AGCCATATACGAGTCTGCCA+TGG + chr5_2:3833997-3834016 None:intergenic 50.0%
GCAGACTCGTATATGGCTAG+AGG - chr5_2:3833999-3834018 Msa0750430:intron 50.0%
GACACATGTCAGTCAGCTAG+AGG + chr5_2:3834512-3834531 None:intergenic 50.0%
GTCAGCAACTCCTAGATGAC+TGG - chr5_2:3834533-3834552 Msa0750430:intron 50.0%
CGACAATGTCAGACCTGTCA+CGG + chr5_2:3834971-3834990 None:intergenic 50.0%
! CATCAAGTGAGAGTGTGAGC+TGG - chr5_2:3835203-3835222 Msa0750430:intron 50.0%
AAGTGAAGACTCCCTTGCCT+TGG - chr5_2:3835549-3835568 Msa0750430:intron 50.0%
TAAATGCAGCCCACTTGGGT+TGG - chr5_2:3836024-3836043 Msa0750430:intron 50.0%
ACCGAAATTGGCACACTCCA+AGG + chr5_2:3836071-3836090 None:intergenic 50.0%
TACCCAGTGCCAATTTCGGT+GGG - chr5_2:3836105-3836124 Msa0750430:intron 50.0%
AGATCGTTCCTGCTCGAAAG+TGG - chr5_2:3836298-3836317 Msa0750430:five_prime_UTR 50.0%
GGCATTGTCTTGTGCATGCA+CGG - chr5_2:3836372-3836391 Msa0750430:intron 50.0%
TCTCCAACACCCACTCTTGT+TGG - chr5_2:3836918-3836937 Msa0750430:intron 50.0%
TCAATGCGCGTCCTACACTT+TGG - chr5_2:3836947-3836966 Msa0750430:five_prime_UTR 50.0%
! CGCGTCCTACACTTTGGAAA+TGG - chr5_2:3836953-3836972 Msa0750430:five_prime_UTR 50.0%
!! AGAAGGCTCTGGAGCTCTAG+AGG - chr5_2:3833285-3833304 Msa0750430:three_prime_UTR 55.0%
!! TGGAGCTCTAGAGGAACTCG+AGG - chr5_2:3833294-3833313 Msa0750430:three_prime_UTR 55.0%
!! AGCTCTAGAGGAACTCGAGG+AGG - chr5_2:3833297-3833316 Msa0750430:three_prime_UTR 55.0%
CTGCAGTATCGTAAGCGTGG+CGG + chr5_2:3833399-3833418 None:intergenic 55.0%
GTAAGCTGCGGTCATGAAGG+TGG + chr5_2:3833465-3833484 None:intergenic 55.0%
CAGGTAAGCTGCGGTCATGA+AGG + chr5_2:3833468-3833487 None:intergenic 55.0%
ATCCGTCTTCACCAGTGGTC+AGG - chr5_2:3834121-3834140 Msa0750430:intron 55.0%
TGCCTGACCACTGGTGAAGA+CGG + chr5_2:3834126-3834145 None:intergenic 55.0%
CTGGCATCTGCCAGTCATCT+AGG + chr5_2:3834546-3834565 None:intergenic 55.0%
CTACCCAGTGCCAATTTCGG+TGG - chr5_2:3836104-3836123 Msa0750430:intron 55.0%
AGCCCACCGAAATTGGCACT+GGG + chr5_2:3836110-3836129 None:intergenic 55.0%
TAGCCCACCGAAATTGGCAC+TGG + chr5_2:3836111-3836130 None:intergenic 55.0%
TAGTTCTCTCACTGCCTGCC+AGG + chr5_2:3836274-3836293 None:intergenic 55.0%
!! TTCCAGCTCAAGGAGCACCG+TGG - chr5_2:3832844-3832863 Msa0750430:three_prime_UTR 60.0%
GAAGACTCCCTTGCCTTGGC+TGG - chr5_2:3835553-3835572 Msa0750430:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + chr5_2:3836036-3836055 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - chr5_2:3836038-3836057 Msa0750430:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - chr5_2:3836043-3836062 Msa0750430:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - chr5_2:3836044-3836063 Msa0750430:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG - chr5_2:3836051-3836070 Msa0750430:intron 60.0%
AGCCACGGTGCTCCTTGAGC+TGG + chr5_2:3832849-3832868 None:intergenic 65.0%
CACCACCAGGCCAACCCAAG+TGG + chr5_2:3836037-3836056 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG + chr5_2:3836050-3836069 None:intergenic 65.0%
!! GCAGCCCACTTGGGTTGGCC+TGG - chr5_2:3836029-3836048 Msa0750430:intron 70.0%
!! GCCCACTTGGGTTGGCCTGG+TGG - chr5_2:3836032-3836051 Msa0750430:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3832803 3837026 3832803 ID=Msa0750430;Name=Msa0750430
chr5_2 mRNA 3832803 3837026 3832803 ID=Msa0750430-mRNA-1;Parent=Msa0750430;Name=Msa0750430-mRNA-1;_AED=0.24;_eAED=0.24;_QI=443|1|1|1|1|1|6|525|68
chr5_2 exon 3832803 3833386 3832803 ID=Msa0750430-mRNA-1:exon:1462;Parent=Msa0750430-mRNA-1
chr5_2 exon 3833469 3833550 3833469 ID=Msa0750430-mRNA-1:exon:1461;Parent=Msa0750430-mRNA-1
chr5_2 exon 3835716 3835826 3835716 ID=Msa0750430-mRNA-1:exon:1460;Parent=Msa0750430-mRNA-1
chr5_2 exon 3836204 3836323 3836204 ID=Msa0750430-mRNA-1:exon:1459;Parent=Msa0750430-mRNA-1
chr5_2 exon 3836412 3836582 3836412 ID=Msa0750430-mRNA-1:exon:1458;Parent=Msa0750430-mRNA-1
chr5_2 exon 3836920 3837026 3836920 ID=Msa0750430-mRNA-1:exon:1457;Parent=Msa0750430-mRNA-1
chr5_2 five_prime_UTR 3836920 3837026 3836920 ID=Msa0750430-mRNA-1:five_prime_utr;Parent=Msa0750430-mRNA-1
chr5_2 five_prime_UTR 3836412 3836582 3836412 ID=Msa0750430-mRNA-1:five_prime_utr;Parent=Msa0750430-mRNA-1
chr5_2 five_prime_UTR 3836204 3836323 3836204 ID=Msa0750430-mRNA-1:five_prime_utr;Parent=Msa0750430-mRNA-1
chr5_2 five_prime_UTR 3835782 3835826 3835782 ID=Msa0750430-mRNA-1:five_prime_utr;Parent=Msa0750430-mRNA-1
chr5_2 CDS 3835716 3835781 3835716 ID=Msa0750430-mRNA-1:cds;Parent=Msa0750430-mRNA-1
chr5_2 CDS 3833469 3833550 3833469 ID=Msa0750430-mRNA-1:cds;Parent=Msa0750430-mRNA-1
chr5_2 CDS 3833328 3833386 3833328 ID=Msa0750430-mRNA-1:cds;Parent=Msa0750430-mRNA-1
chr5_2 three_prime_UTR 3832803 3833327 3832803 ID=Msa0750430-mRNA-1:three_prime_utr;Parent=Msa0750430-mRNA-1
Gene Sequence

>Msa0750430

ATGGATGTATACCGTTGCAAAGGAGTCTTAAATGTTCAAAACTCTGATGAATTGCATACTTTGCAGGCAGTGAGAGAACTATATGAGATCGTTCCTGCTCGAAAGTGGAAGAAAGAAGAAAACAGGATGAATAAGATAGTATTTATAGGTCATAATCTGAAAGAAGATGTCCTAATCAATGGCTTGAAAGCTCTTGCAACCTGTTAG

Protein sequence

>Msa0750430

MDVYRCKGVLNVQNSDELHTLQAVRELYEIVPARKWKKEENRMNKIVFIGHNLKEDVLINGLKALATC*