Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211200 | RHN74416.1 | 95.281 | 551 | 16 | 1 | 1 | 551 | 39 | 579 | 0.0 | 1066 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211200 | sp|Q501D1|Y1490_ARATH | 45.088 | 570 | 265 | 15 | 13 | 550 | 17 | 570 | 4.23e-158 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211200 | A0A396J822 | 95.281 | 551 | 16 | 1 | 1 | 551 | 39 | 579 | 0.0 | 1066 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015670 | Msa0211200 | 0.816410 | 5.610181e-52 | -8.615850e-47 |
| Msa0036890 | Msa0211200 | 0.820660 | 6.100152e-53 | -8.615850e-47 |
| Msa0051050 | Msa0211200 | 0.844315 | 8.156914e-59 | -8.615850e-47 |
| Msa0084970 | Msa0211200 | 0.821537 | 3.830655e-53 | -8.615850e-47 |
| Msa0101240 | Msa0211200 | 0.862150 | 6.213763e-64 | -8.615850e-47 |
| Msa0130990 | Msa0211200 | 0.801284 | 9.682931e-49 | -8.615850e-47 |
| Msa0184410 | Msa0211200 | 0.834347 | 3.158987e-56 | -8.615850e-47 |
| Msa0211200 | Msa0244890 | 0.822763 | 1.990255e-53 | -8.615850e-47 |
| Msa0211200 | Msa0244900 | 0.818333 | 2.070787e-52 | -8.615850e-47 |
| Msa0211200 | Msa0290680 | 0.856484 | 3.117919e-62 | -8.615850e-47 |
| Msa0211200 | Msa0328730 | 0.894956 | 1.512863e-75 | -8.615850e-47 |
| Msa0211200 | Msa0432670 | 0.801971 | 6.998515e-49 | -8.615850e-47 |
| Msa0211200 | Msa0579660 | 0.809702 | 1.660684e-50 | -8.615850e-47 |
| Msa0211200 | Msa0590640 | 0.813538 | 2.433687e-51 | -8.615850e-47 |
| Msa0211200 | Msa0626270 | 0.808499 | 3.006057e-50 | -8.615850e-47 |
| Msa0211200 | Msa0630940 | 0.804263 | 2.348887e-49 | -8.615850e-47 |
| Msa0211200 | Msa0664540 | 0.800097 | 1.691134e-48 | -8.615850e-47 |
| Msa0211200 | Msa0715420 | 0.827679 | 1.369539e-54 | -8.615850e-47 |
| Msa0211200 | Msa0718800 | 0.803299 | 3.725576e-49 | -8.615850e-47 |
| Msa0211200 | Msa0751260 | 0.811870 | 5.638519e-51 | -8.615850e-47 |
| Msa0211200 | Msa0754770 | 0.803166 | 3.968128e-49 | -8.615850e-47 |
| Msa0211200 | Msa0758250 | 0.817660 | 2.939434e-52 | -8.615850e-47 |
| Msa0211200 | Msa0796630 | 0.804187 | 2.437012e-49 | -8.615850e-47 |
| Msa0211200 | Msa0865970 | 0.827616 | 1.418037e-54 | -8.615850e-47 |
| Msa0211200 | Msa0866070 | 0.823734 | 1.180611e-53 | -8.615850e-47 |
| Msa0211200 | Msa0871720 | 0.820440 | 6.853124e-53 | -8.615850e-47 |
| Msa0211200 | Msa1027990 | 0.803089 | 4.116046e-49 | -8.615850e-47 |
| Msa0211200 | Msa1085330 | 0.821018 | 5.046132e-53 | -8.615850e-47 |
| Msa0211200 | Msa1155900 | 0.802095 | 6.600346e-49 | -8.615850e-47 |
| Msa0211200 | Msa1219900 | 0.828054 | 1.112492e-54 | -8.615850e-47 |
| Msa0211200 | Msa1250420 | 0.801231 | 9.926865e-49 | -8.615850e-47 |
| Msa0211200 | Msa1266490 | 0.828173 | 1.041421e-54 | -8.615850e-47 |
| Msa0211200 | Msa1334490 | 0.838689 | 2.476573e-57 | -8.615850e-47 |
| Msa0211200 | Msa1360420 | 0.878660 | 2.346368e-69 | -8.615850e-47 |
| Msa0211200 | Msa1382710 | 0.801210 | 1.002618e-48 | -8.615850e-47 |
| Msa0211200 | Msa1399260 | 0.806759 | 7.036804e-50 | -8.615850e-47 |
| Msa0211200 | Msa1409490 | 0.839179 | 1.849799e-57 | -8.615850e-47 |
| Msa0211200 | Msa1446330 | 0.801803 | 7.578584e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211200 | MtrunA17_Chr2g0310081 | 95.281 | 551 | 16 | 1 | 1 | 551 | 39 | 579 | 0.0 | 1066 |
| Msa0211200 | MtrunA17_Chr2g0309191 | 60.213 | 563 | 189 | 9 | 3 | 551 | 12 | 553 | 0.0 | 665 |
| Msa0211200 | MtrunA17_Chr2g0309181 | 57.321 | 560 | 201 | 9 | 10 | 551 | 47 | 586 | 0.0 | 636 |
| Msa0211200 | MtrunA17_Chr4g0074491 | 55.773 | 563 | 201 | 11 | 15 | 551 | 7 | 547 | 0.0 | 607 |
| Msa0211200 | MtrunA17_Chr2g0309171 | 52.931 | 580 | 220 | 10 | 15 | 551 | 583 | 1152 | 0.0 | 600 |
| Msa0211200 | MtrunA17_Chr2g0309171 | 54.111 | 523 | 209 | 8 | 45 | 546 | 17 | 529 | 0.0 | 564 |
| Msa0211200 | MtrunA17_Chr2g0309131 | 52.509 | 558 | 183 | 10 | 1 | 550 | 2 | 485 | 0.0 | 555 |
| Msa0211200 | MtrunA17_Chr4g0039581 | 46.678 | 572 | 266 | 10 | 3 | 550 | 11 | 567 | 3.94e-176 | 509 |
| Msa0211200 | MtrunA17_Chr5g0395701 | 46.690 | 574 | 258 | 10 | 12 | 550 | 45 | 605 | 4.00e-170 | 495 |
| Msa0211200 | MtrunA17_Chr1g0190341 | 44.840 | 562 | 263 | 11 | 13 | 550 | 20 | 558 | 2.26e-165 | 481 |
| Msa0211200 | MtrunA17_Chr1g0190371 | 44.840 | 562 | 263 | 11 | 13 | 550 | 20 | 558 | 2.26e-165 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0211200 | AT2G44230.1 | 55.124 | 566 | 215 | 10 | 1 | 551 | 1 | 542 | 0.0 | 621 |
| Msa0211200 | AT2G44260.1 | 54.196 | 572 | 220 | 9 | 1 | 550 | 1 | 552 | 0.0 | 618 |
| Msa0211200 | AT2G44260.2 | 53.041 | 592 | 226 | 10 | 1 | 550 | 1 | 582 | 0.0 | 617 |
| Msa0211200 | AT3G01880.1 | 49.458 | 554 | 243 | 9 | 14 | 550 | 56 | 589 | 0.0 | 541 |
| Msa0211200 | AT3G01870.1 | 49.186 | 553 | 244 | 8 | 14 | 550 | 52 | 583 | 0.0 | 531 |
| Msa0211200 | AT5G43950.1 | 46.964 | 560 | 263 | 11 | 13 | 550 | 17 | 564 | 1.28e-170 | 495 |
| Msa0211200 | AT5G18490.1 | 44.946 | 554 | 257 | 12 | 20 | 551 | 25 | 552 | 6.96e-162 | 472 |
| Msa0211200 | AT1G04090.1 | 45.088 | 570 | 265 | 15 | 13 | 550 | 17 | 570 | 4.30e-159 | 466 |
| Msa0211200 | AT3G04350.1 | 43.082 | 571 | 278 | 13 | 6 | 551 | 18 | 566 | 3.30e-157 | 461 |
| Msa0211200 | AT3G04350.2 | 43.680 | 538 | 272 | 11 | 39 | 551 | 13 | 544 | 5.65e-154 | 452 |
Find 129 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAAATTACTTATAATTT+AGG | 0.099121 | 2_1:+52059023 | Msa0211200:CDS |
| AATTGTTTCTGGGGAGTATT+TGG | 0.142107 | 2_1:+52058950 | Msa0211200:CDS |
| AGTGATTTGGGTATTGATTT+TGG | 0.158866 | 2_1:+52058915 | Msa0211200:CDS |
| CCTAATGGTTATAGCCCTTT+AGG | 0.202069 | 2_1:+52057961 | Msa0211200:CDS |
| TGAGATTAATTCATGGATTT+GGG | 0.203465 | 2_1:+52058062 | Msa0211200:CDS |
| GTGAGATTAATTCATGGATT+TGG | 0.207795 | 2_1:+52058061 | Msa0211200:CDS |
| GCCTAATTTACCCCAAATTA+AGG | 0.223955 | 2_1:+52058266 | Msa0211200:CDS |
| CTTGTGCTAGTGCCTTAATT+TGG | 0.229784 | 2_1:-52058278 | None:intergenic |
| GCCTTAATTTGGGGTAAATT+AGG | 0.239469 | 2_1:-52058267 | None:intergenic |
| TCTCTATTAGCTTTATCTTT+TGG | 0.243499 | 2_1:-52058486 | None:intergenic |
| GTGGCTTATTCTTCATTAAA+TGG | 0.252619 | 2_1:+52058816 | Msa0211200:CDS |
| TTGTGCTAGTGCCTTAATTT+GGG | 0.273123 | 2_1:-52058277 | None:intergenic |
| TGAAGAACCAATCCAGCTTT+TGG | 0.276809 | 2_1:-52058852 | None:intergenic |
| TGCTCCATTTGACTCATCTT+TGG | 0.277282 | 2_1:-52057845 | None:intergenic |
| AATGTGCCAGGCCCATTAAA+AGG | 0.295091 | 2_1:-52058609 | None:intergenic |
| GTCATCTTGTCCACCTTCTA+AGG | 0.303756 | 2_1:-52057716 | None:intergenic |
| AGGTGATGAGTTGGAGAAGT+TGG | 0.308524 | 2_1:+52059043 | Msa0211200:CDS |
| GACCTAAGCAGAAGAGAAAT+TGG | 0.314600 | 2_1:+52059126 | Msa0211200:CDS |
| TGAAACTAAGAAGAGTGATT+TGG | 0.317355 | 2_1:+52058902 | Msa0211200:CDS |
| ATCAAATGGTATTTCACAAA+TGG | 0.321572 | 2_1:+52058354 | Msa0211200:CDS |
| CTAATGGTTATAGCCCTTTA+GGG | 0.328617 | 2_1:+52057962 | Msa0211200:CDS |
| CCAAACAACAAACCTCTCTT+TGG | 0.335542 | 2_1:+52057808 | Msa0211200:CDS |
| CCTCAAGGTTTCTTCACATT+AGG | 0.335790 | 2_1:+52057772 | Msa0211200:CDS |
| CCAAAGAGAGGTTTGTTGTT+TGG | 0.338726 | 2_1:-52057808 | None:intergenic |
| GAAGCAATGATGGTGCTTAT+TGG | 0.344274 | 2_1:+52058454 | Msa0211200:CDS |
| CAATTGATTACACACTTGTT+TGG | 0.344510 | 2_1:+52057878 | Msa0211200:CDS |
| CAAGCTCCTAGTGTTCTTGT+TGG | 0.352506 | 2_1:+52058153 | Msa0211200:CDS |
| TATCAACATTCAACGAAATC+TGG | 0.353989 | 2_1:+52057689 | Msa0211200:CDS |
| GAAACTAAGAAGAGTGATTT+GGG | 0.354458 | 2_1:+52058903 | Msa0211200:CDS |
| TGAGGAAGATTTGAGCCTAA+TGG | 0.365782 | 2_1:-52058426 | None:intergenic |
| ATTGTTTCTGGGGAGTATTT+GGG | 0.370952 | 2_1:+52058951 | Msa0211200:CDS |
| TGGTGGAACATTTACTGATT+TGG | 0.371624 | 2_1:+52058569 | Msa0211200:CDS |
| TTCAACCATGTTCAATCAAA+TGG | 0.371740 | 2_1:+52058340 | Msa0211200:CDS |
| GGTAATGGAATCATTGATCT+AGG | 0.375117 | 2_1:+52057646 | Msa0211200:CDS |
| AAGTTGGAGAAGGTGGTTCC+TGG | 0.379444 | 2_1:+52059059 | Msa0211200:CDS |
| AACATTTCACTTGGTAAGAT+AGG | 0.380922 | 2_1:+52058651 | Msa0211200:CDS |
| CAAACAAGTGTGTAATCAAT+TGG | 0.381962 | 2_1:-52057877 | None:intergenic |
| TCAAATGGTATTTCACAAAT+GGG | 0.383417 | 2_1:+52058355 | Msa0211200:CDS |
| TTCTTCACCTATCAACTCAT+TGG | 0.384297 | 2_1:-52059093 | None:intergenic |
| AAGATAAAGATGGTTACATT+TGG | 0.391775 | 2_1:+52057926 | Msa0211200:CDS |
| TTTCATGTAAAACCAATGTT+TGG | 0.395827 | 2_1:+52058549 | Msa0211200:CDS |
| CAACAAACCTCTCTTTGGTT+GGG | 0.398679 | 2_1:+52057813 | Msa0211200:CDS |
| CTTCAAGGTACTAGTGAGAT+TGG | 0.399867 | 2_1:+52058870 | Msa0211200:CDS |
| TTCAAACAAGAAATAGGAAG+AGG | 0.408402 | 2_1:-52058213 | None:intergenic |
| CTCTTCTGCTTAGGTCCAGT+GGG | 0.408957 | 2_1:-52059119 | None:intergenic |
| GAAATCTGGACAACCTTAGA+AGG | 0.413008 | 2_1:+52057703 | Msa0211200:CDS |
| ACCAATGTGAGATTAATTCA+TGG | 0.416401 | 2_1:+52058055 | Msa0211200:CDS |
| ACAACAAACCTCTCTTTGGT+TGG | 0.417138 | 2_1:+52057812 | Msa0211200:CDS |
| CACAACATAGTAATGGTCAA+TGG | 0.421062 | 2_1:+52058751 | Msa0211200:CDS |
| TGGTTACCAATAGCACCTAA+TGG | 0.422006 | 2_1:+52057946 | Msa0211200:CDS |
| CTATAACCATTAGGTGCTAT+TGG | 0.424957 | 2_1:-52057952 | None:intergenic |
| GTTTGTATAGGTGGTGGATT+TGG | 0.429168 | 2_1:+52057625 | Msa0211200:intron |
| GCTTGAATACCTCTATTGAT+TGG | 0.429359 | 2_1:-52058135 | None:intergenic |
| GCAACTTTCTTTGAACCAAC+AGG | 0.429396 | 2_1:+52057745 | Msa0211200:CDS |
| TAGGTGAACATATTGGTGAT+TGG | 0.434346 | 2_1:+52058670 | Msa0211200:CDS |
| AGGTGAACATATTGGTGATT+GGG | 0.441048 | 2_1:+52058671 | Msa0211200:CDS |
| CCTAAAGGGCTATAACCATT+AGG | 0.444178 | 2_1:-52057961 | None:intergenic |
| CCTAATGGATCAATTTCCAT+TGG | 0.445375 | 2_1:-52058411 | None:intergenic |
| TATTTATCCAAAAGCTGGAT+TGG | 0.447098 | 2_1:+52058845 | Msa0211200:CDS |
| CATGTAAAACCAATGTTTGG+TGG | 0.453406 | 2_1:+52058552 | Msa0211200:CDS |
| ATCAAATTGTTGAGCCAGGT+TGG | 0.455958 | 2_1:+52058976 | Msa0211200:CDS |
| CATGCTATTTATCCAAAAGC+TGG | 0.456591 | 2_1:+52058840 | Msa0211200:CDS |
| AAAGCTGGATTGGTTCTTCA+AGG | 0.458586 | 2_1:+52058855 | Msa0211200:CDS |
| AACCAATTTCTCTTCTGCTT+AGG | 0.465571 | 2_1:-52059128 | None:intergenic |
| GGGGCATTGCTTTATAAGAA+AGG | 0.466177 | 2_1:+52058375 | Msa0211200:CDS |
| TTAAGAGTAAGTAACTTCAA+TGG | 0.466888 | 2_1:+52058705 | Msa0211200:CDS |
| TTATAATTTAGGTGATGAGT+TGG | 0.471376 | 2_1:+52059034 | Msa0211200:CDS |
| TCAAATTGTTGAGCCAGGTT+GGG | 0.471665 | 2_1:+52058977 | Msa0211200:CDS |
| GGGCCTGGCACATTAAAAGT+TGG | 0.476627 | 2_1:+52058618 | Msa0211200:CDS |
| CCTCAAGGTGGAAGCAATGA+TGG | 0.478383 | 2_1:+52058444 | Msa0211200:CDS |
| ACAACATAGTAATGGTCAAT+GGG | 0.479231 | 2_1:+52058752 | Msa0211200:CDS |
| CCAATGGAAATTGATCCATT+AGG | 0.485356 | 2_1:+52058411 | Msa0211200:CDS |
| GGAAATCAAATTGTTGAGCC+AGG | 0.489502 | 2_1:+52058972 | Msa0211200:CDS |
| TCTTCACCTATCAACTCATT+GGG | 0.491681 | 2_1:-52059092 | None:intergenic |
| GTTGGAGAAGTTGGAGAAGG+TGG | 0.493198 | 2_1:+52059052 | Msa0211200:CDS |
| GGCCTGGCACATTAAAAGTT+GGG | 0.493640 | 2_1:+52058619 | Msa0211200:CDS |
| GGTAAGATAGGTGAACATAT+TGG | 0.495274 | 2_1:+52058663 | Msa0211200:CDS |
| CTCATAGATAACATTTCACT+TGG | 0.495794 | 2_1:+52058642 | Msa0211200:CDS |
| AAGCTTAAATGTGGTGTCAA+TGG | 0.498242 | 2_1:-52057408 | None:intergenic |
| GGCAAAGTTGGTATGTTAGC+TGG | 0.501820 | 2_1:-52057431 | None:intergenic |
| TCTCTTCTGCTTAGGTCCAG+TGG | 0.506056 | 2_1:-52059120 | None:intergenic |
| ATGTGCCAGGCCCATTAAAA+GGG | 0.511536 | 2_1:-52058608 | None:intergenic |
| AAGCAGAAGAGAAATTGGTT+TGG | 0.512029 | 2_1:+52059131 | Msa0211200:CDS |
| TTGTGACAATATGCCCTAAA+GGG | 0.516168 | 2_1:-52057975 | None:intergenic |
| ATAGGTGGTGGATTTGGTAA+TGG | 0.516311 | 2_1:+52057631 | Msa0211200:intron |
| TTAGGATGCAAGTACATGAA+TGG | 0.525866 | 2_1:-52058309 | None:intergenic |
| AGCTTAAATGTGGTGTCAAT+GGG | 0.528640 | 2_1:-52057407 | None:intergenic |
| TCATTGGGCAATTTCAAGCC+AGG | 0.529228 | 2_1:-52059077 | None:intergenic |
| GTTGCCAAAGATGAGTCAAA+TGG | 0.531167 | 2_1:+52057841 | Msa0211200:CDS |
| TTTAATGAAGAATAAGCCAC+TGG | 0.534311 | 2_1:-52058813 | None:intergenic |
| GAAGGTGGACAAGATGACTT+AGG | 0.543468 | 2_1:+52057721 | Msa0211200:CDS |
| AATGAGTTGATAGGTGAAGA+AGG | 0.545267 | 2_1:+52059095 | Msa0211200:CDS |
| AAACCTTGAGGTATTCCTGT+TGG | 0.546596 | 2_1:-52057760 | None:intergenic |
| ATAGGTGAAGAAGGGCCCAC+TGG | 0.547362 | 2_1:+52059104 | Msa0211200:CDS |
| AAAATCAAACAAGATAAAGA+TGG | 0.551254 | 2_1:+52057916 | Msa0211200:CDS |
| AAATTGCCCAATGAGTTGAT+AGG | 0.552488 | 2_1:+52059086 | Msa0211200:CDS |
| CAATGATGGTGCTTATTGGT+TGG | 0.558172 | 2_1:+52058458 | Msa0211200:CDS |
| TCAGAAGTTGAATTTCAAAG+TGG | 0.558316 | 2_1:+52058783 | Msa0211200:CDS |
| GTAAATGTTCCACCAAACAT+TGG | 0.562694 | 2_1:-52058561 | None:intergenic |
| TCAAACAAGAAATAGGAAGA+GGG | 0.564288 | 2_1:-52058212 | None:intergenic |
| AGGAGAAGAATCAAATCCAA+TGG | 0.569336 | 2_1:+52058395 | Msa0211200:CDS |
| TGAGTGCCTTGTGGCAAAGT+TGG | 0.572641 | 2_1:-52057443 | None:intergenic |
| GTTGTGACAATATGCCCTAA+AGG | 0.575356 | 2_1:-52057976 | None:intergenic |
| TGGTGACAATACTATCAAGA+AGG | 0.585929 | 2_1:-52057478 | None:intergenic |
| CATTTACTGATTTGGCCATG+TGG | 0.588074 | 2_1:+52058577 | Msa0211200:CDS |
| TATGTTAGACCAATCAATAG+AGG | 0.593203 | 2_1:+52058126 | Msa0211200:CDS |
| GAACCAACAGGAATACCTCA+AGG | 0.594921 | 2_1:+52057757 | Msa0211200:CDS |
| AATGTGGTGTCAATGGGAAG+AGG | 0.596119 | 2_1:-52057401 | None:intergenic |
| AAAGTTCCAACAAGAACACT+AGG | 0.596544 | 2_1:-52058159 | None:intergenic |
| TGTGCTAGTGCCTTAATTTG+GGG | 0.596705 | 2_1:-52058276 | None:intergenic |
| CCATCATTGCTTCCACCTTG+AGG | 0.597806 | 2_1:-52058444 | None:intergenic |
| ATGAGTTGATAGGTGAAGAA+GGG | 0.608495 | 2_1:+52059096 | Msa0211200:CDS |
| CATTGGATTCTATCAAGTGA+AGG | 0.610351 | 2_1:-52058012 | None:intergenic |
| TTAGGCTCAAATCTTCCTCA+AGG | 0.614815 | 2_1:+52058429 | Msa0211200:CDS |
| GAGATTAATTCATGGATTTG+GGG | 0.616547 | 2_1:+52058063 | Msa0211200:CDS |
| TGAGTTGGAGAAGTTGGAGA+AGG | 0.616966 | 2_1:+52059049 | Msa0211200:CDS |
| GGCTCAAATCTTCCTCAAGG+TGG | 0.618174 | 2_1:+52058432 | Msa0211200:CDS |
| AAATACCATTTGATTGAACA+TGG | 0.621650 | 2_1:-52058345 | None:intergenic |
| ATCTGGACAACCTTAGAAGG+TGG | 0.623634 | 2_1:+52057706 | Msa0211200:CDS |
| TCCATGAATTAATCTCACAT+TGG | 0.628335 | 2_1:-52058056 | None:intergenic |
| AACATACCAACTTTGCCACA+AGG | 0.629007 | 2_1:+52057437 | Msa0211200:CDS |
| CAAATGGTATTTCACAAATG+GGG | 0.632002 | 2_1:+52058356 | Msa0211200:CDS |
| TGAGATCTGATCTCACACAT+TGG | 0.647996 | 2_1:-52058029 | None:intergenic |
| ACTAGAACCCAACCAAAGAG+AGG | 0.659753 | 2_1:-52057820 | None:intergenic |
| TCAAAGTGGAAATAAACCAG+TGG | 0.680780 | 2_1:+52058797 | Msa0211200:CDS |
| CCTAATGTGAAGAAACCTTG+AGG | 0.683221 | 2_1:-52057772 | None:intergenic |
| AATGGAATCATTGATCTAGG+TGG | 0.694511 | 2_1:+52057649 | Msa0211200:CDS |
| GTTAGCTGGAAGCTTAAATG+TGG | 0.712615 | 2_1:-52057417 | None:intergenic |
| TGAAAGAGATGAGTGCCTTG+TGG | 0.718569 | 2_1:-52057452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAAAAATTGATGAAAA+AGG | + | chr2_1:52058090-52058109 | Msa0211200:CDS | 15.0% |
| !!! | TTAATTTTGAAATTGTTTCT+GGG | + | chr2_1:52058940-52058959 | Msa0211200:CDS | 15.0% |
| !!! | CCTAAATTATAAGTAATTTT+AGG | - | chr2_1:52059026-52059045 | None:intergenic | 15.0% |
| !! | CCTAAAATTACTTATAATTT+AGG | + | chr2_1:52059023-52059042 | Msa0211200:CDS | 15.0% |
| !! | GATAAAAAAATTGATGAAAA+AGG | + | chr2_1:52058090-52058109 | Msa0211200:CDS | 15.0% |
| !!! | TTAATTTTGAAATTGTTTCT+GGG | + | chr2_1:52058940-52058959 | Msa0211200:CDS | 15.0% |
| !!! | CCTAAATTATAAGTAATTTT+AGG | - | chr2_1:52059026-52059045 | None:intergenic | 15.0% |
| !! | CCTAAAATTACTTATAATTT+AGG | + | chr2_1:52059023-52059042 | Msa0211200:CDS | 15.0% |
| !! | AAAATCAAACAAGATAAAGA+TGG | + | chr2_1:52057916-52057935 | Msa0211200:CDS | 20.0% |
| !!! | AGATTTTTCAAACAAGAAAT+AGG | - | chr2_1:52058222-52058241 | None:intergenic | 20.0% |
| !!! | TATTTTTCACAACATAGTAA+TGG | + | chr2_1:52058744-52058763 | Msa0211200:CDS | 20.0% |
| !!! | GTTAATTTTGAAATTGTTTC+TGG | + | chr2_1:52058939-52058958 | Msa0211200:CDS | 20.0% |
| !!! | TAATTTTGAAATTGTTTCTG+GGG | + | chr2_1:52058941-52058960 | Msa0211200:CDS | 20.0% |
| !! | AAAATCAAACAAGATAAAGA+TGG | + | chr2_1:52057916-52057935 | Msa0211200:CDS | 20.0% |
| !!! | AGATTTTTCAAACAAGAAAT+AGG | - | chr2_1:52058222-52058241 | None:intergenic | 20.0% |
| !!! | TATTTTTCACAACATAGTAA+TGG | + | chr2_1:52058744-52058763 | Msa0211200:CDS | 20.0% |
| !!! | GTTAATTTTGAAATTGTTTC+TGG | + | chr2_1:52058939-52058958 | Msa0211200:CDS | 20.0% |
| !!! | TAATTTTGAAATTGTTTCTG+GGG | + | chr2_1:52058941-52058960 | Msa0211200:CDS | 20.0% |
| ! | CTTTACATATGTGTTTGTAT+AGG | + | chr2_1:52057613-52057632 | Msa0211200:intron | 25.0% |
| !! | TTGATATTTGTGACACTTTT+AGG | - | chr2_1:52057675-52057694 | None:intergenic | 25.0% |
| ! | AAGATAAAGATGGTTACATT+TGG | + | chr2_1:52057926-52057945 | Msa0211200:CDS | 25.0% |
| ! | TGAGATTAATTCATGGATTT+GGG | + | chr2_1:52058062-52058081 | Msa0211200:CDS | 25.0% |
| ! | AAATACCATTTGATTGAACA+TGG | - | chr2_1:52058348-52058367 | None:intergenic | 25.0% |
| ! | ATCAAATGGTATTTCACAAA+TGG | + | chr2_1:52058354-52058373 | Msa0211200:CDS | 25.0% |
| ! | TCAAATGGTATTTCACAAAT+GGG | + | chr2_1:52058355-52058374 | Msa0211200:CDS | 25.0% |
| !!! | TCTCTATTAGCTTTATCTTT+TGG | - | chr2_1:52058489-52058508 | None:intergenic | 25.0% |
| ! | AATAGAGAAAGAGTCAAAAA+AGG | + | chr2_1:52058501-52058520 | Msa0211200:CDS | 25.0% |
| ! | TTTCATGTAAAACCAATGTT+TGG | + | chr2_1:52058549-52058568 | Msa0211200:CDS | 25.0% |
| !!! | TGGATTTTTTACCCTTTTAA+TGG | + | chr2_1:52058597-52058616 | Msa0211200:CDS | 25.0% |
| !!! | GGATTTTTTACCCTTTTAAT+GGG | + | chr2_1:52058598-52058617 | Msa0211200:CDS | 25.0% |
| ! | TTAAGAGTAAGTAACTTCAA+TGG | + | chr2_1:52058705-52058724 | Msa0211200:CDS | 25.0% |
| !!! | GGTGAATTTTTTTAGACAAT+GGG | + | chr2_1:52058998-52059017 | Msa0211200:CDS | 25.0% |
| !!! | GTGAATTTTTTTAGACAATG+GGG | + | chr2_1:52058999-52059018 | Msa0211200:CDS | 25.0% |
| ! | TTATAATTTAGGTGATGAGT+TGG | + | chr2_1:52059034-52059053 | Msa0211200:CDS | 25.0% |
| ! | CTTTACATATGTGTTTGTAT+AGG | + | chr2_1:52057613-52057632 | Msa0211200:intron | 25.0% |
| !! | TTGATATTTGTGACACTTTT+AGG | - | chr2_1:52057675-52057694 | None:intergenic | 25.0% |
| ! | AAGATAAAGATGGTTACATT+TGG | + | chr2_1:52057926-52057945 | Msa0211200:CDS | 25.0% |
| ! | TGAGATTAATTCATGGATTT+GGG | + | chr2_1:52058062-52058081 | Msa0211200:CDS | 25.0% |
| ! | AAATACCATTTGATTGAACA+TGG | - | chr2_1:52058348-52058367 | None:intergenic | 25.0% |
| ! | ATCAAATGGTATTTCACAAA+TGG | + | chr2_1:52058354-52058373 | Msa0211200:CDS | 25.0% |
| ! | TCAAATGGTATTTCACAAAT+GGG | + | chr2_1:52058355-52058374 | Msa0211200:CDS | 25.0% |
| !!! | TCTCTATTAGCTTTATCTTT+TGG | - | chr2_1:52058489-52058508 | None:intergenic | 25.0% |
| ! | AATAGAGAAAGAGTCAAAAA+AGG | + | chr2_1:52058501-52058520 | Msa0211200:CDS | 25.0% |
| ! | TTTCATGTAAAACCAATGTT+TGG | + | chr2_1:52058549-52058568 | Msa0211200:CDS | 25.0% |
| !!! | TGGATTTTTTACCCTTTTAA+TGG | + | chr2_1:52058597-52058616 | Msa0211200:CDS | 25.0% |
| !!! | GGATTTTTTACCCTTTTAAT+GGG | + | chr2_1:52058598-52058617 | Msa0211200:CDS | 25.0% |
| ! | TTAAGAGTAAGTAACTTCAA+TGG | + | chr2_1:52058705-52058724 | Msa0211200:CDS | 25.0% |
| !!! | GGTGAATTTTTTTAGACAAT+GGG | + | chr2_1:52058998-52059017 | Msa0211200:CDS | 25.0% |
| !!! | GTGAATTTTTTTAGACAATG+GGG | + | chr2_1:52058999-52059018 | Msa0211200:CDS | 25.0% |
| ! | TTATAATTTAGGTGATGAGT+TGG | + | chr2_1:52059034-52059053 | Msa0211200:CDS | 25.0% |
| GATAATTTCTTGTCGGAATT+TGG | - | chr2_1:52057501-52057520 | None:intergenic | 30.0% | |
| TTCTGTCGATAATTTCTTGT+CGG | - | chr2_1:52057508-52057527 | None:intergenic | 30.0% | |
| TACATATGTGTTTGTATAGG+TGG | + | chr2_1:52057616-52057635 | Msa0211200:intron | 30.0% | |
| TATCAACATTCAACGAAATC+TGG | + | chr2_1:52057689-52057708 | Msa0211200:CDS | 30.0% | |
| CAAACAAGTGTGTAATCAAT+TGG | - | chr2_1:52057880-52057899 | None:intergenic | 30.0% | |
| CAATTGATTACACACTTGTT+TGG | + | chr2_1:52057878-52057897 | Msa0211200:CDS | 30.0% | |
| ACCAATGTGAGATTAATTCA+TGG | + | chr2_1:52058055-52058074 | Msa0211200:CDS | 30.0% | |
| TCCATGAATTAATCTCACAT+TGG | - | chr2_1:52058059-52058078 | None:intergenic | 30.0% | |
| GTGAGATTAATTCATGGATT+TGG | + | chr2_1:52058061-52058080 | Msa0211200:CDS | 30.0% | |
| GAGATTAATTCATGGATTTG+GGG | + | chr2_1:52058063-52058082 | Msa0211200:CDS | 30.0% | |
| TATGTTAGACCAATCAATAG+AGG | + | chr2_1:52058126-52058145 | Msa0211200:CDS | 30.0% | |
| TCAAACAAGAAATAGGAAGA+GGG | - | chr2_1:52058215-52058234 | None:intergenic | 30.0% | |
| TTCAAACAAGAAATAGGAAG+AGG | - | chr2_1:52058216-52058235 | None:intergenic | 30.0% | |
| ! | CATGGTTGAAACTTTTCATT+AGG | - | chr2_1:52058330-52058349 | None:intergenic | 30.0% |
| TTCAACCATGTTCAATCAAA+TGG | + | chr2_1:52058340-52058359 | Msa0211200:CDS | 30.0% | |
| CAAATGGTATTTCACAAATG+GGG | + | chr2_1:52058356-52058375 | Msa0211200:CDS | 30.0% | |
| GGTGATTTCAAAAATTGTCA+AGG | + | chr2_1:52058522-52058541 | Msa0211200:CDS | 30.0% | |
| AAAAGGGTAAAAAATCCACA+TGG | - | chr2_1:52058595-52058614 | None:intergenic | 30.0% | |
| CTCATAGATAACATTTCACT+TGG | + | chr2_1:52058642-52058661 | Msa0211200:CDS | 30.0% | |
| AACATTTCACTTGGTAAGAT+AGG | + | chr2_1:52058651-52058670 | Msa0211200:CDS | 30.0% | |
| ACAACATAGTAATGGTCAAT+GGG | + | chr2_1:52058752-52058771 | Msa0211200:CDS | 30.0% | |
| TCAGAAGTTGAATTTCAAAG+TGG | + | chr2_1:52058783-52058802 | Msa0211200:CDS | 30.0% | |
| TTTAATGAAGAATAAGCCAC+TGG | - | chr2_1:52058816-52058835 | None:intergenic | 30.0% | |
| GTGGCTTATTCTTCATTAAA+TGG | + | chr2_1:52058816-52058835 | Msa0211200:CDS | 30.0% | |
| TATTTATCCAAAAGCTGGAT+TGG | + | chr2_1:52058845-52058864 | Msa0211200:CDS | 30.0% | |
| TGAAACTAAGAAGAGTGATT+TGG | + | chr2_1:52058902-52058921 | Msa0211200:CDS | 30.0% | |
| GAAACTAAGAAGAGTGATTT+GGG | + | chr2_1:52058903-52058922 | Msa0211200:CDS | 30.0% | |
| !!! | AGTGATTTGGGTATTGATTT+TGG | + | chr2_1:52058915-52058934 | Msa0211200:CDS | 30.0% |
| !!! | GGGTGAATTTTTTTAGACAA+TGG | + | chr2_1:52058997-52059016 | Msa0211200:CDS | 30.0% |
| GATAATTTCTTGTCGGAATT+TGG | - | chr2_1:52057501-52057520 | None:intergenic | 30.0% | |
| TTCTGTCGATAATTTCTTGT+CGG | - | chr2_1:52057508-52057527 | None:intergenic | 30.0% | |
| TACATATGTGTTTGTATAGG+TGG | + | chr2_1:52057616-52057635 | Msa0211200:intron | 30.0% | |
| TATCAACATTCAACGAAATC+TGG | + | chr2_1:52057689-52057708 | Msa0211200:CDS | 30.0% | |
| CAAACAAGTGTGTAATCAAT+TGG | - | chr2_1:52057880-52057899 | None:intergenic | 30.0% | |
| CAATTGATTACACACTTGTT+TGG | + | chr2_1:52057878-52057897 | Msa0211200:CDS | 30.0% | |
| ACCAATGTGAGATTAATTCA+TGG | + | chr2_1:52058055-52058074 | Msa0211200:CDS | 30.0% | |
| TCCATGAATTAATCTCACAT+TGG | - | chr2_1:52058059-52058078 | None:intergenic | 30.0% | |
| GTGAGATTAATTCATGGATT+TGG | + | chr2_1:52058061-52058080 | Msa0211200:CDS | 30.0% | |
| GAGATTAATTCATGGATTTG+GGG | + | chr2_1:52058063-52058082 | Msa0211200:CDS | 30.0% | |
| TATGTTAGACCAATCAATAG+AGG | + | chr2_1:52058126-52058145 | Msa0211200:CDS | 30.0% | |
| TCAAACAAGAAATAGGAAGA+GGG | - | chr2_1:52058215-52058234 | None:intergenic | 30.0% | |
| TTCAAACAAGAAATAGGAAG+AGG | - | chr2_1:52058216-52058235 | None:intergenic | 30.0% | |
| ! | CATGGTTGAAACTTTTCATT+AGG | - | chr2_1:52058330-52058349 | None:intergenic | 30.0% |
| TTCAACCATGTTCAATCAAA+TGG | + | chr2_1:52058340-52058359 | Msa0211200:CDS | 30.0% | |
| CAAATGGTATTTCACAAATG+GGG | + | chr2_1:52058356-52058375 | Msa0211200:CDS | 30.0% | |
| GGTGATTTCAAAAATTGTCA+AGG | + | chr2_1:52058522-52058541 | Msa0211200:CDS | 30.0% | |
| AAAAGGGTAAAAAATCCACA+TGG | - | chr2_1:52058595-52058614 | None:intergenic | 30.0% | |
| CTCATAGATAACATTTCACT+TGG | + | chr2_1:52058642-52058661 | Msa0211200:CDS | 30.0% | |
| AACATTTCACTTGGTAAGAT+AGG | + | chr2_1:52058651-52058670 | Msa0211200:CDS | 30.0% | |
| ACAACATAGTAATGGTCAAT+GGG | + | chr2_1:52058752-52058771 | Msa0211200:CDS | 30.0% | |
| TCAGAAGTTGAATTTCAAAG+TGG | + | chr2_1:52058783-52058802 | Msa0211200:CDS | 30.0% | |
| TTTAATGAAGAATAAGCCAC+TGG | - | chr2_1:52058816-52058835 | None:intergenic | 30.0% | |
| GTGGCTTATTCTTCATTAAA+TGG | + | chr2_1:52058816-52058835 | Msa0211200:CDS | 30.0% | |
| TATTTATCCAAAAGCTGGAT+TGG | + | chr2_1:52058845-52058864 | Msa0211200:CDS | 30.0% | |
| TGAAACTAAGAAGAGTGATT+TGG | + | chr2_1:52058902-52058921 | Msa0211200:CDS | 30.0% | |
| GAAACTAAGAAGAGTGATTT+GGG | + | chr2_1:52058903-52058922 | Msa0211200:CDS | 30.0% | |
| !!! | AGTGATTTGGGTATTGATTT+TGG | + | chr2_1:52058915-52058934 | Msa0211200:CDS | 30.0% |
| !!! | GGGTGAATTTTTTTAGACAA+TGG | + | chr2_1:52058997-52059016 | Msa0211200:CDS | 30.0% |
| ! | AGCTTAAATGTGGTGTCAAT+GGG | - | chr2_1:52057410-52057429 | None:intergenic | 35.0% |
| ! | AAGCTTAAATGTGGTGTCAA+TGG | - | chr2_1:52057411-52057430 | None:intergenic | 35.0% |
| TGGTGACAATACTATCAAGA+AGG | - | chr2_1:52057481-52057500 | None:intergenic | 35.0% | |
| ATATGTGTTTGTATAGGTGG+TGG | + | chr2_1:52057619-52057638 | Msa0211200:intron | 35.0% | |
| !! | GGTAATGGAATCATTGATCT+AGG | + | chr2_1:52057646-52057665 | Msa0211200:CDS | 35.0% |
| AATGGAATCATTGATCTAGG+TGG | + | chr2_1:52057649-52057668 | Msa0211200:CDS | 35.0% | |
| ! | CTATAACCATTAGGTGCTAT+TGG | - | chr2_1:52057955-52057974 | None:intergenic | 35.0% |
| CTAATGGTTATAGCCCTTTA+GGG | + | chr2_1:52057962-52057981 | Msa0211200:CDS | 35.0% | |
| TTGTGACAATATGCCCTAAA+GGG | - | chr2_1:52057978-52057997 | None:intergenic | 35.0% | |
| CATTGGATTCTATCAAGTGA+AGG | - | chr2_1:52058015-52058034 | None:intergenic | 35.0% | |
| GCTTGAATACCTCTATTGAT+TGG | - | chr2_1:52058138-52058157 | None:intergenic | 35.0% | |
| AAAGTTCCAACAAGAACACT+AGG | - | chr2_1:52058162-52058181 | None:intergenic | 35.0% | |
| !!! | GGAACTTTTTTAGCACATGT+TGG | + | chr2_1:52058174-52058193 | Msa0211200:CDS | 35.0% |
| GCCTAATTTACCCCAAATTA+AGG | + | chr2_1:52058266-52058285 | Msa0211200:CDS | 35.0% | |
| ! | GCCTTAATTTGGGGTAAATT+AGG | - | chr2_1:52058270-52058289 | None:intergenic | 35.0% |
| TTGTGCTAGTGCCTTAATTT+GGG | - | chr2_1:52058280-52058299 | None:intergenic | 35.0% | |
| TTAGGATGCAAGTACATGAA+TGG | - | chr2_1:52058312-52058331 | None:intergenic | 35.0% | |
| AGGAGAAGAATCAAATCCAA+TGG | + | chr2_1:52058395-52058414 | Msa0211200:CDS | 35.0% | |
| ! | CCTAATGGATCAATTTCCAT+TGG | - | chr2_1:52058414-52058433 | None:intergenic | 35.0% |
| CCAATGGAAATTGATCCATT+AGG | + | chr2_1:52058411-52058430 | Msa0211200:CDS | 35.0% | |
| CATGTAAAACCAATGTTTGG+TGG | + | chr2_1:52058552-52058571 | Msa0211200:CDS | 35.0% | |
| GTAAATGTTCCACCAAACAT+TGG | - | chr2_1:52058564-52058583 | None:intergenic | 35.0% | |
| ! | TGGTGGAACATTTACTGATT+TGG | + | chr2_1:52058569-52058588 | Msa0211200:CDS | 35.0% |
| GGTAAGATAGGTGAACATAT+TGG | + | chr2_1:52058663-52058682 | Msa0211200:CDS | 35.0% | |
| ! | TAGGTGAACATATTGGTGAT+TGG | + | chr2_1:52058670-52058689 | Msa0211200:CDS | 35.0% |
| ! | AGGTGAACATATTGGTGATT+GGG | + | chr2_1:52058671-52058690 | Msa0211200:CDS | 35.0% |
| CACAACATAGTAATGGTCAA+TGG | + | chr2_1:52058751-52058770 | Msa0211200:CDS | 35.0% | |
| TCAAAGTGGAAATAAACCAG+TGG | + | chr2_1:52058797-52058816 | Msa0211200:CDS | 35.0% | |
| ! | CATGCTATTTATCCAAAAGC+TGG | + | chr2_1:52058840-52058859 | Msa0211200:CDS | 35.0% |
| !! | AATTGTTTCTGGGGAGTATT+TGG | + | chr2_1:52058950-52058969 | Msa0211200:CDS | 35.0% |
| !! | ATTGTTTCTGGGGAGTATTT+GGG | + | chr2_1:52058951-52058970 | Msa0211200:CDS | 35.0% |
| CTAAAAAAATTCACCCAACC+TGG | - | chr2_1:52058993-52059012 | None:intergenic | 35.0% | |
| !! | AAATTGCCCAATGAGTTGAT+AGG | + | chr2_1:52059086-52059105 | Msa0211200:CDS | 35.0% |
| TCTTCACCTATCAACTCATT+GGG | - | chr2_1:52059095-52059114 | None:intergenic | 35.0% | |
| TTCTTCACCTATCAACTCAT+TGG | - | chr2_1:52059096-52059115 | None:intergenic | 35.0% | |
| !! | AATGAGTTGATAGGTGAAGA+AGG | + | chr2_1:52059095-52059114 | Msa0211200:CDS | 35.0% |
| !! | ATGAGTTGATAGGTGAAGAA+GGG | + | chr2_1:52059096-52059115 | Msa0211200:CDS | 35.0% |
| AACCAATTTCTCTTCTGCTT+AGG | - | chr2_1:52059131-52059150 | None:intergenic | 35.0% | |
| AAGCAGAAGAGAAATTGGTT+TGG | + | chr2_1:52059131-52059150 | Msa0211200:CDS | 35.0% | |
| ! | AGCTTAAATGTGGTGTCAAT+GGG | - | chr2_1:52057410-52057429 | None:intergenic | 35.0% |
| ! | AAGCTTAAATGTGGTGTCAA+TGG | - | chr2_1:52057411-52057430 | None:intergenic | 35.0% |
| TGGTGACAATACTATCAAGA+AGG | - | chr2_1:52057481-52057500 | None:intergenic | 35.0% | |
| ATATGTGTTTGTATAGGTGG+TGG | + | chr2_1:52057619-52057638 | Msa0211200:intron | 35.0% | |
| !! | GGTAATGGAATCATTGATCT+AGG | + | chr2_1:52057646-52057665 | Msa0211200:CDS | 35.0% |
| AATGGAATCATTGATCTAGG+TGG | + | chr2_1:52057649-52057668 | Msa0211200:CDS | 35.0% | |
| ! | CTATAACCATTAGGTGCTAT+TGG | - | chr2_1:52057955-52057974 | None:intergenic | 35.0% |
| CTAATGGTTATAGCCCTTTA+GGG | + | chr2_1:52057962-52057981 | Msa0211200:CDS | 35.0% | |
| TTGTGACAATATGCCCTAAA+GGG | - | chr2_1:52057978-52057997 | None:intergenic | 35.0% | |
| CATTGGATTCTATCAAGTGA+AGG | - | chr2_1:52058015-52058034 | None:intergenic | 35.0% | |
| GCTTGAATACCTCTATTGAT+TGG | - | chr2_1:52058138-52058157 | None:intergenic | 35.0% | |
| AAAGTTCCAACAAGAACACT+AGG | - | chr2_1:52058162-52058181 | None:intergenic | 35.0% | |
| !!! | GGAACTTTTTTAGCACATGT+TGG | + | chr2_1:52058174-52058193 | Msa0211200:CDS | 35.0% |
| GCCTAATTTACCCCAAATTA+AGG | + | chr2_1:52058266-52058285 | Msa0211200:CDS | 35.0% | |
| ! | GCCTTAATTTGGGGTAAATT+AGG | - | chr2_1:52058270-52058289 | None:intergenic | 35.0% |
| TTGTGCTAGTGCCTTAATTT+GGG | - | chr2_1:52058280-52058299 | None:intergenic | 35.0% | |
| TTAGGATGCAAGTACATGAA+TGG | - | chr2_1:52058312-52058331 | None:intergenic | 35.0% | |
| AGGAGAAGAATCAAATCCAA+TGG | + | chr2_1:52058395-52058414 | Msa0211200:CDS | 35.0% | |
| ! | CCTAATGGATCAATTTCCAT+TGG | - | chr2_1:52058414-52058433 | None:intergenic | 35.0% |
| CCAATGGAAATTGATCCATT+AGG | + | chr2_1:52058411-52058430 | Msa0211200:CDS | 35.0% | |
| CATGTAAAACCAATGTTTGG+TGG | + | chr2_1:52058552-52058571 | Msa0211200:CDS | 35.0% | |
| GTAAATGTTCCACCAAACAT+TGG | - | chr2_1:52058564-52058583 | None:intergenic | 35.0% | |
| ! | TGGTGGAACATTTACTGATT+TGG | + | chr2_1:52058569-52058588 | Msa0211200:CDS | 35.0% |
| GGTAAGATAGGTGAACATAT+TGG | + | chr2_1:52058663-52058682 | Msa0211200:CDS | 35.0% | |
| ! | TAGGTGAACATATTGGTGAT+TGG | + | chr2_1:52058670-52058689 | Msa0211200:CDS | 35.0% |
| ! | AGGTGAACATATTGGTGATT+GGG | + | chr2_1:52058671-52058690 | Msa0211200:CDS | 35.0% |
| CACAACATAGTAATGGTCAA+TGG | + | chr2_1:52058751-52058770 | Msa0211200:CDS | 35.0% | |
| TCAAAGTGGAAATAAACCAG+TGG | + | chr2_1:52058797-52058816 | Msa0211200:CDS | 35.0% | |
| ! | CATGCTATTTATCCAAAAGC+TGG | + | chr2_1:52058840-52058859 | Msa0211200:CDS | 35.0% |
| !! | AATTGTTTCTGGGGAGTATT+TGG | + | chr2_1:52058950-52058969 | Msa0211200:CDS | 35.0% |
| !! | ATTGTTTCTGGGGAGTATTT+GGG | + | chr2_1:52058951-52058970 | Msa0211200:CDS | 35.0% |
| CTAAAAAAATTCACCCAACC+TGG | - | chr2_1:52058993-52059012 | None:intergenic | 35.0% | |
| !! | AAATTGCCCAATGAGTTGAT+AGG | + | chr2_1:52059086-52059105 | Msa0211200:CDS | 35.0% |
| TCTTCACCTATCAACTCATT+GGG | - | chr2_1:52059095-52059114 | None:intergenic | 35.0% | |
| TTCTTCACCTATCAACTCAT+TGG | - | chr2_1:52059096-52059115 | None:intergenic | 35.0% | |
| !! | AATGAGTTGATAGGTGAAGA+AGG | + | chr2_1:52059095-52059114 | Msa0211200:CDS | 35.0% |
| !! | ATGAGTTGATAGGTGAAGAA+GGG | + | chr2_1:52059096-52059115 | Msa0211200:CDS | 35.0% |
| AACCAATTTCTCTTCTGCTT+AGG | - | chr2_1:52059131-52059150 | None:intergenic | 35.0% | |
| AAGCAGAAGAGAAATTGGTT+TGG | + | chr2_1:52059131-52059150 | Msa0211200:CDS | 35.0% | |
| GTTAGCTGGAAGCTTAAATG+TGG | - | chr2_1:52057420-52057439 | None:intergenic | 40.0% | |
| AACATACCAACTTTGCCACA+AGG | + | chr2_1:52057437-52057456 | Msa0211200:CDS | 40.0% | |
| !! | GTTTGTATAGGTGGTGGATT+TGG | + | chr2_1:52057625-52057644 | Msa0211200:intron | 40.0% |
| !! | ATAGGTGGTGGATTTGGTAA+TGG | + | chr2_1:52057631-52057650 | Msa0211200:intron | 40.0% |
| GAAATCTGGACAACCTTAGA+AGG | + | chr2_1:52057703-52057722 | Msa0211200:CDS | 40.0% | |
| GCAACTTTCTTTGAACCAAC+AGG | + | chr2_1:52057745-52057764 | Msa0211200:CDS | 40.0% | |
| ! | AAACCTTGAGGTATTCCTGT+TGG | - | chr2_1:52057763-52057782 | None:intergenic | 40.0% |
| CCTAATGTGAAGAAACCTTG+AGG | - | chr2_1:52057775-52057794 | None:intergenic | 40.0% | |
| CCTCAAGGTTTCTTCACATT+AGG | + | chr2_1:52057772-52057791 | Msa0211200:CDS | 40.0% | |
| !! | CCAAAGAGAGGTTTGTTGTT+TGG | - | chr2_1:52057811-52057830 | None:intergenic | 40.0% |
| CCAAACAACAAACCTCTCTT+TGG | + | chr2_1:52057808-52057827 | Msa0211200:CDS | 40.0% | |
| ACAACAAACCTCTCTTTGGT+TGG | + | chr2_1:52057812-52057831 | Msa0211200:CDS | 40.0% | |
| CAACAAACCTCTCTTTGGTT+GGG | + | chr2_1:52057813-52057832 | Msa0211200:CDS | 40.0% | |
| GTTGCCAAAGATGAGTCAAA+TGG | + | chr2_1:52057841-52057860 | Msa0211200:CDS | 40.0% | |
| TGCTCCATTTGACTCATCTT+TGG | - | chr2_1:52057848-52057867 | None:intergenic | 40.0% | |
| TGGTTACCAATAGCACCTAA+TGG | + | chr2_1:52057946-52057965 | Msa0211200:CDS | 40.0% | |
| CCTAAAGGGCTATAACCATT+AGG | - | chr2_1:52057964-52057983 | None:intergenic | 40.0% | |
| CCTAATGGTTATAGCCCTTT+AGG | + | chr2_1:52057961-52057980 | Msa0211200:CDS | 40.0% | |
| GTTGTGACAATATGCCCTAA+AGG | - | chr2_1:52057979-52057998 | None:intergenic | 40.0% | |
| ! | CTATCAAGTGAAGGCTTTTC+AGG | - | chr2_1:52058006-52058025 | None:intergenic | 40.0% |
| TGAGATCTGATCTCACACAT+TGG | - | chr2_1:52058032-52058051 | None:intergenic | 40.0% | |
| ! | TGTGCTAGTGCCTTAATTTG+GGG | - | chr2_1:52058279-52058298 | None:intergenic | 40.0% |
| CTTGTGCTAGTGCCTTAATT+TGG | - | chr2_1:52058281-52058300 | None:intergenic | 40.0% | |
| !! | GGGGCATTGCTTTATAAGAA+AGG | + | chr2_1:52058375-52058394 | Msa0211200:CDS | 40.0% |
| TGAGGAAGATTTGAGCCTAA+TGG | - | chr2_1:52058429-52058448 | None:intergenic | 40.0% | |
| TTAGGCTCAAATCTTCCTCA+AGG | + | chr2_1:52058429-52058448 | Msa0211200:CDS | 40.0% | |
| ! | GAAGCAATGATGGTGCTTAT+TGG | + | chr2_1:52058454-52058473 | Msa0211200:CDS | 40.0% |
| ! | CAATGATGGTGCTTATTGGT+TGG | + | chr2_1:52058458-52058477 | Msa0211200:CDS | 40.0% |
| !! | CATTTACTGATTTGGCCATG+TGG | + | chr2_1:52058577-52058596 | Msa0211200:CDS | 40.0% |
| !! | TTTTACCCTTTTAATGGGCC+TGG | + | chr2_1:52058603-52058622 | Msa0211200:CDS | 40.0% |
| ! | TGAAGAACCAATCCAGCTTT+TGG | - | chr2_1:52058855-52058874 | None:intergenic | 40.0% |
| !! | AAAGCTGGATTGGTTCTTCA+AGG | + | chr2_1:52058855-52058874 | Msa0211200:CDS | 40.0% |
| ! | CTTCAAGGTACTAGTGAGAT+TGG | + | chr2_1:52058870-52058889 | Msa0211200:CDS | 40.0% |
| GGAAATCAAATTGTTGAGCC+AGG | + | chr2_1:52058972-52058991 | Msa0211200:CDS | 40.0% | |
| ATCAAATTGTTGAGCCAGGT+TGG | + | chr2_1:52058976-52058995 | Msa0211200:CDS | 40.0% | |
| TCAAATTGTTGAGCCAGGTT+GGG | + | chr2_1:52058977-52058996 | Msa0211200:CDS | 40.0% | |
| GACCTAAGCAGAAGAGAAAT+TGG | + | chr2_1:52059126-52059145 | Msa0211200:CDS | 40.0% | |
| GTTAGCTGGAAGCTTAAATG+TGG | - | chr2_1:52057420-52057439 | None:intergenic | 40.0% | |
| AACATACCAACTTTGCCACA+AGG | + | chr2_1:52057437-52057456 | Msa0211200:CDS | 40.0% | |
| !! | GTTTGTATAGGTGGTGGATT+TGG | + | chr2_1:52057625-52057644 | Msa0211200:intron | 40.0% |
| !! | ATAGGTGGTGGATTTGGTAA+TGG | + | chr2_1:52057631-52057650 | Msa0211200:intron | 40.0% |
| GAAATCTGGACAACCTTAGA+AGG | + | chr2_1:52057703-52057722 | Msa0211200:CDS | 40.0% | |
| GCAACTTTCTTTGAACCAAC+AGG | + | chr2_1:52057745-52057764 | Msa0211200:CDS | 40.0% | |
| ! | AAACCTTGAGGTATTCCTGT+TGG | - | chr2_1:52057763-52057782 | None:intergenic | 40.0% |
| CCTAATGTGAAGAAACCTTG+AGG | - | chr2_1:52057775-52057794 | None:intergenic | 40.0% | |
| CCTCAAGGTTTCTTCACATT+AGG | + | chr2_1:52057772-52057791 | Msa0211200:CDS | 40.0% | |
| !! | CCAAAGAGAGGTTTGTTGTT+TGG | - | chr2_1:52057811-52057830 | None:intergenic | 40.0% |
| CCAAACAACAAACCTCTCTT+TGG | + | chr2_1:52057808-52057827 | Msa0211200:CDS | 40.0% | |
| ACAACAAACCTCTCTTTGGT+TGG | + | chr2_1:52057812-52057831 | Msa0211200:CDS | 40.0% | |
| CAACAAACCTCTCTTTGGTT+GGG | + | chr2_1:52057813-52057832 | Msa0211200:CDS | 40.0% | |
| GTTGCCAAAGATGAGTCAAA+TGG | + | chr2_1:52057841-52057860 | Msa0211200:CDS | 40.0% | |
| TGCTCCATTTGACTCATCTT+TGG | - | chr2_1:52057848-52057867 | None:intergenic | 40.0% | |
| TGGTTACCAATAGCACCTAA+TGG | + | chr2_1:52057946-52057965 | Msa0211200:CDS | 40.0% | |
| CCTAAAGGGCTATAACCATT+AGG | - | chr2_1:52057964-52057983 | None:intergenic | 40.0% | |
| CCTAATGGTTATAGCCCTTT+AGG | + | chr2_1:52057961-52057980 | Msa0211200:CDS | 40.0% | |
| GTTGTGACAATATGCCCTAA+AGG | - | chr2_1:52057979-52057998 | None:intergenic | 40.0% | |
| ! | CTATCAAGTGAAGGCTTTTC+AGG | - | chr2_1:52058006-52058025 | None:intergenic | 40.0% |
| TGAGATCTGATCTCACACAT+TGG | - | chr2_1:52058032-52058051 | None:intergenic | 40.0% | |
| ! | TGTGCTAGTGCCTTAATTTG+GGG | - | chr2_1:52058279-52058298 | None:intergenic | 40.0% |
| CTTGTGCTAGTGCCTTAATT+TGG | - | chr2_1:52058281-52058300 | None:intergenic | 40.0% | |
| !! | GGGGCATTGCTTTATAAGAA+AGG | + | chr2_1:52058375-52058394 | Msa0211200:CDS | 40.0% |
| TGAGGAAGATTTGAGCCTAA+TGG | - | chr2_1:52058429-52058448 | None:intergenic | 40.0% | |
| TTAGGCTCAAATCTTCCTCA+AGG | + | chr2_1:52058429-52058448 | Msa0211200:CDS | 40.0% | |
| ! | GAAGCAATGATGGTGCTTAT+TGG | + | chr2_1:52058454-52058473 | Msa0211200:CDS | 40.0% |
| ! | CAATGATGGTGCTTATTGGT+TGG | + | chr2_1:52058458-52058477 | Msa0211200:CDS | 40.0% |
| !! | CATTTACTGATTTGGCCATG+TGG | + | chr2_1:52058577-52058596 | Msa0211200:CDS | 40.0% |
| !! | TTTTACCCTTTTAATGGGCC+TGG | + | chr2_1:52058603-52058622 | Msa0211200:CDS | 40.0% |
| ! | TGAAGAACCAATCCAGCTTT+TGG | - | chr2_1:52058855-52058874 | None:intergenic | 40.0% |
| !! | AAAGCTGGATTGGTTCTTCA+AGG | + | chr2_1:52058855-52058874 | Msa0211200:CDS | 40.0% |
| ! | CTTCAAGGTACTAGTGAGAT+TGG | + | chr2_1:52058870-52058889 | Msa0211200:CDS | 40.0% |
| GGAAATCAAATTGTTGAGCC+AGG | + | chr2_1:52058972-52058991 | Msa0211200:CDS | 40.0% | |
| ATCAAATTGTTGAGCCAGGT+TGG | + | chr2_1:52058976-52058995 | Msa0211200:CDS | 40.0% | |
| TCAAATTGTTGAGCCAGGTT+GGG | + | chr2_1:52058977-52058996 | Msa0211200:CDS | 40.0% | |
| GACCTAAGCAGAAGAGAAAT+TGG | + | chr2_1:52059126-52059145 | Msa0211200:CDS | 40.0% | |
| !! | CAATGGGAAGAGGCTTTTTC+TGG | - | chr2_1:52057394-52057413 | None:intergenic | 45.0% |
| ! | AATGTGGTGTCAATGGGAAG+AGG | - | chr2_1:52057404-52057423 | None:intergenic | 45.0% |
| !! | GGCAAAGTTGGTATGTTAGC+TGG | - | chr2_1:52057434-52057453 | None:intergenic | 45.0% |
| TGAAAGAGATGAGTGCCTTG+TGG | - | chr2_1:52057455-52057474 | None:intergenic | 45.0% | |
| ATCTGGACAACCTTAGAAGG+TGG | + | chr2_1:52057706-52057725 | Msa0211200:CDS | 45.0% | |
| GTCATCTTGTCCACCTTCTA+AGG | - | chr2_1:52057719-52057738 | None:intergenic | 45.0% | |
| GAAGGTGGACAAGATGACTT+AGG | + | chr2_1:52057721-52057740 | Msa0211200:CDS | 45.0% | |
| GAACCAACAGGAATACCTCA+AGG | + | chr2_1:52057757-52057776 | Msa0211200:CDS | 45.0% | |
| ACTAGAACCCAACCAAAGAG+AGG | - | chr2_1:52057823-52057842 | None:intergenic | 45.0% | |
| !!! | AAGTGAAGGCTTTTCAGGTG+TGG | - | chr2_1:52058001-52058020 | None:intergenic | 45.0% |
| CAAGCTCCTAGTGTTCTTGT+TGG | + | chr2_1:52058153-52058172 | Msa0211200:CDS | 45.0% | |
| ATGTGCCAGGCCCATTAAAA+GGG | - | chr2_1:52058611-52058630 | None:intergenic | 45.0% | |
| AATGTGCCAGGCCCATTAAA+AGG | - | chr2_1:52058612-52058631 | None:intergenic | 45.0% | |
| GGCCTGGCACATTAAAAGTT+GGG | + | chr2_1:52058619-52058638 | Msa0211200:CDS | 45.0% | |
| ! | AGCCCAACTTTTAATGTGCC+AGG | - | chr2_1:52058624-52058643 | None:intergenic | 45.0% |
| ! | AGGTGATGAGTTGGAGAAGT+TGG | + | chr2_1:52059043-52059062 | Msa0211200:CDS | 45.0% |
| ! | TGAGTTGGAGAAGTTGGAGA+AGG | + | chr2_1:52059049-52059068 | Msa0211200:CDS | 45.0% |
| TCATTGGGCAATTTCAAGCC+AGG | - | chr2_1:52059080-52059099 | None:intergenic | 45.0% | |
| !! | CAATGGGAAGAGGCTTTTTC+TGG | - | chr2_1:52057394-52057413 | None:intergenic | 45.0% |
| ! | AATGTGGTGTCAATGGGAAG+AGG | - | chr2_1:52057404-52057423 | None:intergenic | 45.0% |
| !! | GGCAAAGTTGGTATGTTAGC+TGG | - | chr2_1:52057434-52057453 | None:intergenic | 45.0% |
| TGAAAGAGATGAGTGCCTTG+TGG | - | chr2_1:52057455-52057474 | None:intergenic | 45.0% | |
| ATCTGGACAACCTTAGAAGG+TGG | + | chr2_1:52057706-52057725 | Msa0211200:CDS | 45.0% | |
| GTCATCTTGTCCACCTTCTA+AGG | - | chr2_1:52057719-52057738 | None:intergenic | 45.0% | |
| GAAGGTGGACAAGATGACTT+AGG | + | chr2_1:52057721-52057740 | Msa0211200:CDS | 45.0% | |
| GAACCAACAGGAATACCTCA+AGG | + | chr2_1:52057757-52057776 | Msa0211200:CDS | 45.0% | |
| ACTAGAACCCAACCAAAGAG+AGG | - | chr2_1:52057823-52057842 | None:intergenic | 45.0% | |
| !!! | AAGTGAAGGCTTTTCAGGTG+TGG | - | chr2_1:52058001-52058020 | None:intergenic | 45.0% |
| CAAGCTCCTAGTGTTCTTGT+TGG | + | chr2_1:52058153-52058172 | Msa0211200:CDS | 45.0% | |
| ATGTGCCAGGCCCATTAAAA+GGG | - | chr2_1:52058611-52058630 | None:intergenic | 45.0% | |
| AATGTGCCAGGCCCATTAAA+AGG | - | chr2_1:52058612-52058631 | None:intergenic | 45.0% | |
| GGCCTGGCACATTAAAAGTT+GGG | + | chr2_1:52058619-52058638 | Msa0211200:CDS | 45.0% | |
| ! | AGCCCAACTTTTAATGTGCC+AGG | - | chr2_1:52058624-52058643 | None:intergenic | 45.0% |
| ! | AGGTGATGAGTTGGAGAAGT+TGG | + | chr2_1:52059043-52059062 | Msa0211200:CDS | 45.0% |
| ! | TGAGTTGGAGAAGTTGGAGA+AGG | + | chr2_1:52059049-52059068 | Msa0211200:CDS | 45.0% |
| TCATTGGGCAATTTCAAGCC+AGG | - | chr2_1:52059080-52059099 | None:intergenic | 45.0% | |
| TGAGTGCCTTGTGGCAAAGT+TGG | - | chr2_1:52057446-52057465 | None:intergenic | 50.0% | |
| GGCTCAAATCTTCCTCAAGG+TGG | + | chr2_1:52058432-52058451 | Msa0211200:CDS | 50.0% | |
| CCATCATTGCTTCCACCTTG+AGG | - | chr2_1:52058447-52058466 | None:intergenic | 50.0% | |
| CCTCAAGGTGGAAGCAATGA+TGG | + | chr2_1:52058444-52058463 | Msa0211200:CDS | 50.0% | |
| GGGCCTGGCACATTAAAAGT+TGG | + | chr2_1:52058618-52058637 | Msa0211200:CDS | 50.0% | |
| GTTGGAGAAGTTGGAGAAGG+TGG | + | chr2_1:52059052-52059071 | Msa0211200:CDS | 50.0% | |
| AAGTTGGAGAAGGTGGTTCC+TGG | + | chr2_1:52059059-52059078 | Msa0211200:CDS | 50.0% | |
| CTCTTCTGCTTAGGTCCAGT+GGG | - | chr2_1:52059122-52059141 | None:intergenic | 50.0% | |
| TCTCTTCTGCTTAGGTCCAG+TGG | - | chr2_1:52059123-52059142 | None:intergenic | 50.0% | |
| TGAGTGCCTTGTGGCAAAGT+TGG | - | chr2_1:52057446-52057465 | None:intergenic | 50.0% | |
| GGCTCAAATCTTCCTCAAGG+TGG | + | chr2_1:52058432-52058451 | Msa0211200:CDS | 50.0% | |
| CCATCATTGCTTCCACCTTG+AGG | - | chr2_1:52058447-52058466 | None:intergenic | 50.0% | |
| CCTCAAGGTGGAAGCAATGA+TGG | + | chr2_1:52058444-52058463 | Msa0211200:CDS | 50.0% | |
| GGGCCTGGCACATTAAAAGT+TGG | + | chr2_1:52058618-52058637 | Msa0211200:CDS | 50.0% | |
| GTTGGAGAAGTTGGAGAAGG+TGG | + | chr2_1:52059052-52059071 | Msa0211200:CDS | 50.0% | |
| AAGTTGGAGAAGGTGGTTCC+TGG | + | chr2_1:52059059-52059078 | Msa0211200:CDS | 50.0% | |
| CTCTTCTGCTTAGGTCCAGT+GGG | - | chr2_1:52059122-52059141 | None:intergenic | 50.0% | |
| TCTCTTCTGCTTAGGTCCAG+TGG | - | chr2_1:52059123-52059142 | None:intergenic | 50.0% | |
| ATAGGTGAAGAAGGGCCCAC+TGG | + | chr2_1:52059104-52059123 | Msa0211200:CDS | 55.0% | |
| ATAGGTGAAGAAGGGCCCAC+TGG | + | chr2_1:52059104-52059123 | Msa0211200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 52057365 | 52059166 | 52057365 | ID=Msa0211200;Name=Msa0211200 |
| chr2_1 | mRNA | 52057365 | 52059166 | 52057365 | ID=Msa0211200-mRNA-1;Parent=Msa0211200;Name=Msa0211200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|551 |
| chr2_1 | exon | 52057365 | 52057488 | 52057365 | ID=Msa0211200-mRNA-1:exon:14430;Parent=Msa0211200-mRNA-1 |
| chr2_1 | exon | 52057635 | 52059166 | 52057635 | ID=Msa0211200-mRNA-1:exon:14431;Parent=Msa0211200-mRNA-1 |
| chr2_1 | CDS | 52057365 | 52057488 | 52057365 | ID=Msa0211200-mRNA-1:cds;Parent=Msa0211200-mRNA-1 |
| chr2_1 | CDS | 52057635 | 52059166 | 52057635 | ID=Msa0211200-mRNA-1:cds;Parent=Msa0211200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
