AlfalfaGEDB | Msa0041620

M. sativa cultivar zhongmu-4 / Msa0041620

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041620	sp\|Q8L9K4\|SOFL5_ARATH	39.535	172	81	8	9	169	5	164	2.34e-20	86.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0041620	-0.816264	6.049205e-52	-8.615850e-47
Msa0001950	Msa0041620	0.812744	3.633794e-51	-8.615850e-47
Msa0016670	Msa0041620	0.824317	8.619128e-54	-8.615850e-47
Msa0021810	Msa0041620	0.817618	3.003201e-52	-8.615850e-47
Msa0024680	Msa0041620	0.824609	7.356132e-54	-8.615850e-47
Msa0029540	Msa0041620	-0.814401	1.569652e-51	-8.615850e-47
Msa0030310	Msa0041620	0.828252	9.969976e-55	-8.615850e-47
Msa0032840	Msa0041620	-0.860527	1.940951e-63	-8.615850e-47
Msa0041620	Msa0073670	0.823515	1.329042e-53	-8.615850e-47
Msa0041620	Msa0089200	0.831981	1.226689e-55	-8.615850e-47
Msa0041620	Msa0094950	0.811604	6.442835e-51	-8.615850e-47
Msa0041620	Msa0095380	0.808912	2.452853e-50	-8.615850e-47
Msa0041620	Msa0096670	0.816060	6.718652e-52	-8.615850e-47
Msa0041620	Msa0113160	0.802029	6.810578e-49	-8.615850e-47
Msa0041620	Msa0114540	-0.843599	1.269052e-58	-8.615850e-47
Msa0041620	Msa0124340	0.816608	5.066174e-52	-8.615850e-47
Msa0041620	Msa0124990	0.802130	6.492209e-49	-8.615850e-47
Msa0041620	Msa0135990	0.841609	4.283046e-58	-8.615850e-47
Msa0041620	Msa0138970	-0.818008	2.451819e-52	-8.615850e-47
Msa0041620	Msa0141830	0.815602	8.498313e-52	-8.615850e-47
Msa0041620	Msa0143080	0.825290	5.080344e-54	-8.615850e-47
Msa0041620	Msa0143240	-0.813197	2.891027e-51	-8.615850e-47
Msa0041620	Msa0145950	0.808340	3.249333e-50	-8.615850e-47
Msa0041620	Msa0156650	-0.804119	2.517765e-49	-8.615850e-47
Msa0041620	Msa0172350	0.824664	7.140111e-54	-8.615850e-47
Msa0041620	Msa0172960	-0.818268	2.141313e-52	-8.615850e-47
Msa0041620	Msa0183620	0.819198	1.316937e-52	-8.615850e-47
Msa0041620	Msa0186890	0.810607	1.059959e-50	-8.615850e-47
Msa0041620	Msa0188680	-0.803310	3.706210e-49	-8.615850e-47
Msa0041620	Msa0194970	0.827545	1.474329e-54	-8.615850e-47
Msa0041620	Msa0222920	0.856341	3.433947e-62	-8.615850e-47
Msa0041620	Msa0230550	-0.862035	6.737883e-64	-8.615850e-47
Msa0041620	Msa0236980	0.828565	8.375355e-55	-8.615850e-47
Msa0041620	Msa0242680	0.823281	1.507567e-53	-8.615850e-47
Msa0041620	Msa0246690	0.819440	1.160166e-52	-8.615850e-47
Msa0041620	Msa0259560	0.839407	1.614325e-57	-8.615850e-47
Msa0041620	Msa0260240	0.811606	6.437434e-51	-8.615850e-47
Msa0041620	Msa0260280	0.815633	8.364741e-52	-8.615850e-47
Msa0041620	Msa0264350	0.827923	1.196681e-54	-8.615850e-47
Msa0041620	Msa0267760	0.824656	7.172591e-54	-8.615850e-47
Msa0041620	Msa0275400	-0.809803	1.579488e-50	-8.615850e-47
Msa0041620	Msa0302450	0.840006	1.127423e-57	-8.615850e-47
Msa0041620	Msa0304260	0.810329	1.216883e-50	-8.615850e-47
Msa0041620	Msa0304300	0.805744	1.151683e-49	-8.615850e-47
Msa0041620	Msa0328210	0.835100	2.042248e-56	-8.615850e-47
Msa0041620	Msa0355270	0.808188	3.501899e-50	-8.615850e-47
Msa0041620	Msa0369570	0.801805	7.571444e-49	-8.615850e-47
Msa0041620	Msa0378080	0.802084	6.636240e-49	-8.615850e-47
Msa0041620	Msa0394400	0.808778	2.620423e-50	-8.615850e-47
Msa0041620	Msa0402330	0.811233	7.755915e-51	-8.615850e-47
Msa0041620	Msa0414950	-0.839144	1.888481e-57	-8.615850e-47
Msa0041620	Msa0417610	-0.801524	8.644500e-49	-8.615850e-47
Msa0041620	Msa0419820	0.801385	9.231509e-49	-8.615850e-47
Msa0041620	Msa0421780	-0.805756	1.144536e-49	-8.615850e-47
Msa0041620	Msa0422830	0.802087	6.626004e-49	-8.615850e-47
Msa0041620	Msa0422910	0.814949	1.187218e-51	-8.615850e-47
Msa0041620	Msa0423360	-0.827612	1.421291e-54	-8.615850e-47
Msa0041620	Msa0425940	0.805440	1.333333e-49	-8.615850e-47
Msa0041620	Msa0426160	0.800035	1.740602e-48	-8.615850e-47
Msa0041620	Msa0436280	-0.834200	3.439362e-56	-8.615850e-47
Msa0041620	Msa0437690	-0.813017	3.166519e-51	-8.615850e-47
Msa0041620	Msa0467960	-0.813215	2.864816e-51	-8.615850e-47
Msa0041620	Msa0469910	-0.858670	7.024916e-63	-8.615850e-47
Msa0041620	Msa0472380	0.807229	5.596104e-50	-8.615850e-47
Msa0041620	Msa0480320	0.816205	6.236442e-52	-8.615850e-47
Msa0041620	Msa0485990	0.808209	3.465102e-50	-8.615850e-47
Msa0041620	Msa0497030	0.807015	6.211559e-50	-8.615850e-47
Msa0041620	Msa0509950	-0.812119	4.977718e-51	-8.615850e-47
Msa0041620	Msa0521880	0.831620	1.505687e-55	-8.615850e-47
Msa0041620	Msa0525340	0.853228	2.745164e-61	-8.615850e-47
Msa0041620	Msa0526710	0.818503	1.894383e-52	-8.615850e-47
Msa0041620	Msa0527590	0.816626	5.018280e-52	-8.615850e-47
Msa0041620	Msa0535030	0.809433	1.896686e-50	-8.615850e-47
Msa0041620	Msa0535060	0.809111	2.224054e-50	-8.615850e-47
Msa0041620	Msa0535450	0.802177	6.349331e-49	-8.615850e-47
Msa0041620	Msa0541860	0.807800	4.234863e-50	-8.615850e-47
Msa0041620	Msa0542160	0.809141	2.190522e-50	-8.615850e-47
Msa0041620	Msa0546380	0.804499	2.097363e-49	-8.615850e-47
Msa0041620	Msa0568820	0.800887	1.167095e-48	-8.615850e-47
Msa0041620	Msa0576980	0.814677	1.363680e-51	-8.615850e-47
Msa0041620	Msa0590680	0.827184	1.799667e-54	-8.615850e-47
Msa0041620	Msa0591060	0.800642	1.309780e-48	-8.615850e-47
Msa0041620	Msa0591770	0.831669	1.463926e-55	-8.615850e-47
Msa0041620	Msa0618010	0.819208	1.310160e-52	-8.615850e-47
Msa0041620	Msa0618040	0.800341	1.508054e-48	-8.615850e-47
Msa0041620	Msa0619070	0.816790	4.610433e-52	-8.615850e-47
Msa0041620	Msa0619510	0.803020	4.254820e-49	-8.615850e-47
Msa0041620	Msa0638690	0.812610	3.887314e-51	-8.615850e-47
Msa0041620	Msa0639120	0.812245	4.672104e-51	-8.615850e-47
Msa0041620	Msa0642650	0.829041	6.426950e-55	-8.615850e-47
Msa0041620	Msa0669850	0.841986	3.406191e-58	-8.615850e-47
Msa0041620	Msa0670980	0.848208	7.094762e-60	-8.615850e-47
Msa0041620	Msa0677290	0.800492	1.405109e-48	-8.615850e-47
Msa0041620	Msa0684180	-0.809231	2.095762e-50	-8.615850e-47
Msa0041620	Msa0687630	0.807494	4.918203e-50	-8.615850e-47
Msa0041620	Msa0692080	0.805334	1.403909e-49	-8.615850e-47
Msa0041620	Msa0701280	0.801256	9.809377e-49	-8.615850e-47
Msa0041620	Msa0703230	0.809439	1.890905e-50	-8.615850e-47
Msa0041620	Msa0703590	0.806166	9.384722e-50	-8.615850e-47
Msa0041620	Msa0709190	0.807098	5.965333e-50	-8.615850e-47
Msa0041620	Msa0715010	-0.807489	4.929040e-50	-8.615850e-47
Msa0041620	Msa0743680	0.811818	5.788546e-51	-8.615850e-47
Msa0041620	Msa0750920	0.814781	1.293478e-51	-8.615850e-47
Msa0041620	Msa0755340	0.806874	6.655089e-50	-8.615850e-47
Msa0041620	Msa0756630	-0.806992	6.282903e-50	-8.615850e-47
Msa0041620	Msa0778320	0.806728	7.144860e-50	-8.615850e-47
Msa0041620	Msa0784620	0.819777	9.720647e-53	-8.615850e-47
Msa0041620	Msa0787750	0.811176	7.979921e-51	-8.615850e-47
Msa0041620	Msa0790390	-0.804366	2.235776e-49	-8.615850e-47
Msa0041620	Msa0797750	0.801576	8.434379e-49	-8.615850e-47
Msa0041620	Msa0830990	0.800522	1.385557e-48	-8.615850e-47
Msa0041620	Msa0850960	0.811418	7.070828e-51	-8.615850e-47
Msa0041620	Msa0863800	0.802008	6.879466e-49	-8.615850e-47
Msa0041620	Msa0864010	0.801563	8.486592e-49	-8.615850e-47
Msa0041620	Msa0883030	0.826798	2.226488e-54	-8.615850e-47
Msa0041620	Msa0890250	0.808990	2.360250e-50	-8.615850e-47
Msa0041620	Msa0930780	0.810228	1.279507e-50	-8.615850e-47
Msa0041620	Msa0937670	0.824140	9.484600e-54	-8.615850e-47
Msa0041620	Msa0996080	0.806660	7.384925e-50	-8.615850e-47
Msa0041620	Msa1008060	-0.821179	4.633840e-53	-8.615850e-47
Msa0041620	Msa1018790	0.822085	2.860700e-53	-8.615850e-47
Msa0041620	Msa1022970	0.820977	5.156328e-53	-8.615850e-47
Msa0041620	Msa1030930	0.801097	1.057220e-48	-8.615850e-47
Msa0041620	Msa1044340	0.832373	9.809923e-56	-8.615850e-47
Msa0041620	Msa1049510	-0.852378	4.800200e-61	-8.615850e-47
Msa0041620	Msa1054240	0.808420	3.124000e-50	-8.615850e-47
Msa0041620	Msa1061720	0.804847	1.774936e-49	-8.615850e-47
Msa0041620	Msa1067440	-0.837542	4.887097e-57	-8.615850e-47
Msa0041620	Msa1069660	-0.820837	5.554216e-53	-8.615850e-47
Msa0041620	Msa1079370	-0.813616	2.339488e-51	-8.615850e-47
Msa0041620	Msa1082700	0.837556	4.848258e-57	-8.615850e-47
Msa0041620	Msa1094420	0.805288	1.434779e-49	-8.615850e-47
Msa0041620	Msa1126120	-0.807971	3.894753e-50	-8.615850e-47
Msa0041620	Msa1130210	-0.822664	2.098885e-53	-8.615850e-47
Msa0041620	Msa1132520	0.804149	2.480776e-49	-8.615850e-47
Msa0041620	Msa1139810	0.807680	4.491393e-50	-8.615850e-47
Msa0041620	Msa1166010	0.804062	2.586998e-49	-8.615850e-47
Msa0041620	Msa1193950	-0.856271	3.600660e-62	-8.615850e-47
Msa0041620	Msa1208890	-0.817673	2.918699e-52	-8.615850e-47
Msa0041620	Msa1226620	0.821970	3.042293e-53	-8.615850e-47
Msa0041620	Msa1237030	0.846926	1.597282e-59	-8.615850e-47
Msa0041620	Msa1245940	-0.805272	1.445895e-49	-8.615850e-47
Msa0041620	Msa1246530	-0.846754	1.780880e-59	-8.615850e-47
Msa0041620	Msa1259070	-0.807956	3.923099e-50	-8.615850e-47
Msa0041620	Msa1269580	-0.827944	1.182685e-54	-8.615850e-47
Msa0041620	Msa1283990	0.804577	2.020348e-49	-8.615850e-47
Msa0041620	Msa1284520	0.810464	1.138051e-50	-8.615850e-47
Msa0041620	Msa1335940	0.812772	3.582350e-51	-8.615850e-47
Msa0041620	Msa1362510	0.801962	7.030814e-49	-8.615850e-47
Msa0041620	Msa1365150	0.810534	1.098967e-50	-8.615850e-47
Msa0041620	Msa1365870	0.804324	2.281093e-49	-8.615850e-47
Msa0041620	Msa1373510	0.840867	6.711052e-58	-8.615850e-47
Msa0041620	Msa1379570	0.809181	2.147764e-50	-8.615850e-47
Msa0041620	Msa1382310	0.838896	2.190021e-57	-8.615850e-47
Msa0041620	Msa1390310	0.817756	2.795505e-52	-8.615850e-47
Msa0041620	Msa1398480	0.810763	9.803950e-51	-8.615850e-47
Msa0041620	Msa1400610	-0.807375	5.212664e-50	-8.615850e-47
Msa0041620	Msa1403930	-0.832782	7.766450e-56	-8.615850e-47
Msa0041620	Msa1404190	0.804762	1.848715e-49	-8.615850e-47
Msa0041620	Msa1406040	0.800796	1.218166e-48	-8.615850e-47
Msa0041620	Msa1415240	-0.825362	4.886264e-54	-8.615850e-47
Msa0041620	Msa1429360	-0.831644	1.484995e-55	-8.615850e-47
Msa0041620	Msa1438640	0.813567	2.397922e-51	-8.615850e-47
Msa0041620	Msa1439960	0.804418	2.181222e-49	-8.615850e-47
Msa0041620	Msa1442220	-0.812859	3.429862e-51	-8.615850e-47
Msa0041620	Msa1442850	0.800011	1.760694e-48	-8.615850e-47
Msa0041620	Msa1456650	0.802366	5.804686e-49	-8.615850e-47
Msa0041620	Msa1461490	0.804217	2.401559e-49	-8.615850e-47
Msa0041620	Msa1466990	0.811505	6.769938e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041620	MtrunA17_Chr1g0207011	92.857	196	9	4	1	191	3	198	7.87e-119	335
Msa0041620	MtrunA17_Chr5g0393821	51.020	196	71	11	1	187	1	180	2.04e-42	140

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0041620	AT4G33800.2	39.535	172	81	8	9	169	5	164	2.38e-21	86.3
Msa0041620	AT4G33800.1	39.535	172	81	8	9	169	5	164	2.38e-21	86.3

Find 57 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCACATGTTCATTATCCTTT+AGG	0.222495	1_1:+72037124	Msa0041610:intron
ATGGTTTCTGATGCTTCTTC+TGG	0.266605	1_1:-72042011	Msa0041620:CDS
AGCACCACCAACATGGAATT+TGG	0.289275	1_1:+72037297	Msa0041610:CDS
TCATACCAGGAAGAACAATT+TGG	0.315479	1_1:-72041496	Msa0041620:CDS
ACAAAGTTATGTAGGAAATA+TGG	0.330154	1_1:-72041658	Msa0041620:CDS
TATGAAAACACTAGATTCAT+AGG	0.343147	1_1:-72042116	Msa0041620:CDS
GAAGAGGCGATGAGTTCTAT+AGG	0.348824	1_1:+72037174	Msa0041610:CDS
TATAGGGCAAACCATGTTAA+TGG	0.362210	1_1:+72037191	Msa0041610:CDS
TATTTCCTACATAACTTTGT+TGG	0.375448	1_1:+72041661	None:intergenic
CTGAATATATGCGTGACTTC+TGG	0.376162	1_1:+72037467	Msa0041610:intron
TGTAGTAGTGGATGTGAGTC+AGG	0.376527	1_1:-72042164	Msa0041620:CDS
AGGAGTGGAAGATTTGTCTA+TGG	0.397750	1_1:-72042030	Msa0041620:CDS
AAATTGTTCTTCCTGGTATG+AGG	0.406008	1_1:+72041498	None:intergenic
GCTTAATAAACTTATCCTAA+AGG	0.408244	1_1:-72037139	Msa0041620:three_prime_UTR
TCTTTGTTTAGCAGCTGGTA+TGG	0.422441	1_1:-72041341	Msa0041620:intron
GGTGGAACTGAAGGGTACTA+TGG	0.434994	1_1:-72042095	Msa0041620:CDS
CCTTCCAAATTCCATGTTGG+TGG	0.438290	1_1:-72037301	Msa0041620:three_prime_UTR
TTGGTGGTGCTTCTCAAAGT+TGG	0.441638	1_1:-72037285	Msa0041620:three_prime_UTR
TGGTGGTGCTTCTCAAAGTT+GGG	0.449042	1_1:-72037284	Msa0041620:three_prime_UTR
TTGCGTTGCGGTTGTGGTTG+CGG	0.460496	1_1:-72037352	Msa0041620:three_prime_UTR
AGGGTCTTGCGTTGCGGTTG+TGG	0.463530	1_1:-72037358	Msa0041620:three_prime_UTR
AAGAGGCGATGAGTTCTATA+GGG	0.479187	1_1:+72037175	Msa0041610:CDS
AGAAGCAATGTCCTTGACTC+AGG	0.482163	1_1:-72037378	Msa0041620:three_prime_UTR
CAGAAGTGATGACGCTACAT+AGG	0.486769	1_1:-72037447	Msa0041620:three_prime_UTR
GCAGTGTCATGAAGAAAAGA+AGG	0.507146	1_1:+72041855	None:intergenic
GGTACAAAGAAACAGAAAGT+TGG	0.512053	1_1:-72041918	Msa0041620:CDS
ACAAACCAACAAAGTTATGT+AGG	0.515352	1_1:-72041666	Msa0041620:CDS
TTGGTTTGTCCCAACAACAT+TGG	0.519643	1_1:+72041680	None:intergenic
TGCTATTGAAGTTGTTGCAG+TGG	0.524195	1_1:-72041286	Msa0041620:three_prime_UTR
TCTCCTTCCAAATTCCATGT+TGG	0.526459	1_1:-72037304	Msa0041620:three_prime_UTR
GTTAATGGCACTAACAGTTA+CGG	0.549686	1_1:+72037206	Msa0041610:CDS
AACTGTTAGTGCCATTAACA+TGG	0.549756	1_1:-72037202	Msa0041620:three_prime_UTR
GTATGCATCATCCAATGTGC+AGG	0.549946	1_1:+72037236	Msa0041610:CDS
AGAAGTGATGACGCTACATA+GGG	0.557585	1_1:-72037446	Msa0041620:three_prime_UTR
TGACTCAGGGTCTTGCGTTG+CGG	0.557938	1_1:-72037364	Msa0041620:three_prime_UTR
ACATCATCATGTGGAAGATG+TGG	0.558107	1_1:+72041984	None:intergenic
AGATTCATAGGTGGAACTGA+AGG	0.568350	1_1:-72042104	Msa0041620:CDS
GTCACAAATGAGTATTCTGA+AGG	0.574749	1_1:-72042050	Msa0041620:CDS
AACATGGAATTTGGAAGGAG+AGG	0.586422	1_1:+72037306	Msa0041610:CDS
ATTATGAACTGCCTGCACAT+TGG	0.588435	1_1:-72037247	Msa0041620:three_prime_UTR
AAATGAGTATTCTGAAGGAG+TGG	0.595088	1_1:-72042045	Msa0041620:CDS
TTGTTTAGCAGCTGGTATGG+AGG	0.596105	1_1:-72041338	Msa0041620:intron
TTTGATTCTGAATGTAGTAG+TGG	0.600879	1_1:-72042176	Msa0041620:CDS
GAAGCAATGTCCTTGACTCA+GGG	0.617035	1_1:-72037377	Msa0041620:three_prime_UTR
CCACCAACATGGAATTTGGA+AGG	0.619705	1_1:+72037301	Msa0041610:CDS
GTAGGGAAAATCCTCATACC+AGG	0.622430	1_1:-72041509	Msa0041620:intron
CAACGCAAGACCCTGAGTCA+AGG	0.623179	1_1:+72037367	Msa0041610:intron
TTTGAGAAGCACCACCAACA+TGG	0.627251	1_1:+72037290	Msa0041610:CDS
TGTGGTTGCGGCGATAACAG+TGG	0.629666	1_1:-72037340	Msa0041620:three_prime_UTR
TGCAACAACTTCAATAGCAG+AGG	0.636583	1_1:+72041290	None:intergenic
TCATCATGTGGAAGATGTGG+AGG	0.636849	1_1:+72041987	None:intergenic
TTGAAGTAAACATCATCATG+TGG	0.637487	1_1:+72041975	None:intergenic
GATTCATAGGTGGAACTGAA+GGG	0.638366	1_1:-72042103	Msa0041620:CDS
GTAGTGGATGTGAGTCAGGT+TGG	0.642732	1_1:-72042160	Msa0041620:CDS
TGTCATGAAGAAAAGAAGGA+AGG	0.667075	1_1:+72041859	None:intergenic
GAAAACACTAGATTCATAGG+TGG	0.672436	1_1:-72042113	Msa0041620:CDS
AATATGGTAGACTATTCACA+AGG	0.724521	1_1:-72041642	Msa0041620:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTATTTCAATGTAAATAAA+AGG	+	chr1_1:72038713-72038732	None:intergenic	10.0%
!!	TAAAGAATTAATACAATTAA+GGG	+	chr1_1:72038757-72038776	None:intergenic	10.0%
!!	ATAAAGAATTAATACAATTA+AGG	+	chr1_1:72038758-72038777	None:intergenic	10.0%
!!!	ATAAACAAAAATCATTTTTT+AGG	-	chr1_1:72039083-72039102	Msa0041620:intron	10.0%
!!!	TCTATATTTTTTTTTTTTGA+GGG	-	chr1_1:72039130-72039149	Msa0041620:intron	10.0%
!!	ATATTATAAATCATATACAT+TGG	-	chr1_1:72039162-72039181	Msa0041620:intron	10.0%
!!	AATTACTTATTTAATTAAAC+AGG	+	chr1_1:72039710-72039729	None:intergenic	10.0%
!!	CATGTGATTATATAAAAAAT+TGG	-	chr1_1:72038869-72038888	Msa0041620:intron	15.0%
!!!	TAAGTAAAAACTTACTTTTT+AGG	+	chr1_1:72039020-72039039	None:intergenic	15.0%
!!!	GTCTATATTTTTTTTTTTTG+AGG	-	chr1_1:72039129-72039148	Msa0041620:intron	15.0%
!!	AAAGGAATAAAAAAAATCAA+AGG	+	chr1_1:72039669-72039688	None:intergenic	15.0%
!!!	AATATTCCTATACAATTTTA+TGG	+	chr1_1:72039998-72040017	None:intergenic	15.0%
!!	AAATTGTATAGGAATATTAA+AGG	-	chr1_1:72040000-72040019	Msa0041620:intron	15.0%
!!	AATTGTATAGGAATATTAAA+GGG	-	chr1_1:72040001-72040020	Msa0041620:intron	15.0%
!!!	ATGTTTTAATTAATAGAGAT+TGG	+	chr1_1:72040931-72040950	None:intergenic	15.0%
!!	AAAACATTTGATATATGAAA+CGG	-	chr1_1:72040944-72040963	Msa0041620:intron	15.0%
!!	AATGTTAACATAATAGTATT+TGG	-	chr1_1:72041116-72041135	Msa0041620:intron	15.0%
!!	TTAAAAAAAGATGATGTATA+TGG	+	chr1_1:72041185-72041204	None:intergenic	15.0%
!!!	GTAAATTTTGATTTTCTATT+GGG	+	chr1_1:72041456-72041475	None:intergenic	15.0%
!!!	TGTAAATTTTGATTTTCTAT+TGG	+	chr1_1:72041457-72041476	None:intergenic	15.0%
!!!	ACTAATTATTTTGAGGTAAT+TGG	-	chr1_1:72037770-72037789	Msa0041620:intron	20.0%
!!!	AATTTGTTTGTGTTATTTGT+AGG	-	chr1_1:72037852-72037871	Msa0041620:intron	20.0%
!!!	ATTTGTTTGTGTTATTTGTA+GGG	-	chr1_1:72037853-72037872	Msa0041620:intron	20.0%
!!!	GTAATTTTGTTGTTAATCAA+TGG	-	chr1_1:72038218-72038237	Msa0041620:intron	20.0%
!!	TAATTGATAAATTAATCCGA+AGG	+	chr1_1:72038551-72038570	None:intergenic	20.0%
!!!	GTGTATGTACTATTATTTTT+TGG	+	chr1_1:72038622-72038641	None:intergenic	20.0%
!!	TTATCTGAATTAACATTTGT+CGG	+	chr1_1:72038811-72038830	None:intergenic	20.0%
!!	ACAAATGTTAATTCAGATAA+AGG	-	chr1_1:72038811-72038830	Msa0041620:intron	20.0%
!!!	TAAGCAAAAATTCACATTTT+AGG	-	chr1_1:72038935-72038954	Msa0041620:intron	20.0%
!!	CATTTAAAAAATGATGTATG+TGG	-	chr1_1:72038960-72038979	Msa0041620:intron	20.0%
!!!	TTTTTACTTATATTTGTGAC+CGG	-	chr1_1:72039030-72039049	Msa0041620:intron	20.0%
!!	CAAAAAAAACTAAACGAAAT+GGG	+	chr1_1:72039512-72039531	None:intergenic	20.0%
!!	ACAAAAAAAACTAAACGAAA+TGG	+	chr1_1:72039513-72039532	None:intergenic	20.0%
!!!	ACTAGTATAATCTAAAGTTT+TGG	-	chr1_1:72039836-72039855	Msa0041620:intron	20.0%
!!!	AGCTTCTAAAAAATTATTGT+GGG	-	chr1_1:72040645-72040664	Msa0041620:intron	20.0%
!!	AAACTAATAACATGTACAAT+TGG	-	chr1_1:72040806-72040825	Msa0041620:intron	20.0%
!!!	TCTTTTTTTAAGTTTCTCAT+AGG	-	chr1_1:72041194-72041213	Msa0041620:intron	20.0%
!!	TGTTTTCATAAGAATGTTCA+AGG	+	chr1_1:72037253-72037272	Msa0041610:CDS	25.0%
!	TATGAAAACACTAGATTCAT+AGG	-	chr1_1:72037263-72037282	Msa0041620:three_prime_UTR	25.0%
!!	CTTTTCAACTGTAAGAAATA+TGG	-	chr1_1:72037565-72037584	Msa0041620:intron	25.0%
!	TATTTCCTACATAACTTTGT+TGG	+	chr1_1:72037721-72037740	Msa0041610:intron	25.0%
!	ACAAAGTTATGTAGGAAATA+TGG	-	chr1_1:72037721-72037740	Msa0041620:intron	25.0%
!!!	TTCAGCAACTAATTATTTTG+AGG	-	chr1_1:72037763-72037782	Msa0041620:intron	25.0%
!	TGTTACTCAAAGATTAATGA+AGG	-	chr1_1:72038117-72038136	Msa0041620:intron	25.0%
!!!	TCAGTATTGACAAAGTAAAA+AGG	+	chr1_1:72038160-72038179	Msa0041610:three_prime_UTR	25.0%
!	GATTACAAGCTAATTTAGTT+AGG	-	chr1_1:72038242-72038261	Msa0041620:intron	25.0%
!!	AGTAAAACAGATTTTGAATG+AGG	+	chr1_1:72038441-72038460	None:intergenic	25.0%
!	TTTCAGTACATTAAGATGTA+CGG	+	chr1_1:72038667-72038686	None:intergenic	25.0%
!	AGAATTAATACAATTAAGGG+TGG	+	chr1_1:72038754-72038773	None:intergenic	25.0%
!!	TTTTTGCTTATATTTGTGAC+CGG	+	chr1_1:72038925-72038944	None:intergenic	25.0%
!	TATAAACGAATCTAAAGGAT+CGG	+	chr1_1:72039213-72039232	None:intergenic	25.0%
!	TAGCTTATAAACGAATCTAA+AGG	+	chr1_1:72039218-72039237	None:intergenic	25.0%
!	AATCAGATTACATGCATATT+TGG	+	chr1_1:72039302-72039321	None:intergenic	25.0%
!!	TGATTCTAGAAAAGAGAATA+TGG	-	chr1_1:72039317-72039336	Msa0041620:intron	25.0%
!!	TTTGTCAACTTTATCTCTTT+TGG	-	chr1_1:72039528-72039547	Msa0041620:intron	25.0%
!!	TTGTCAACTTTATCTCTTTT+GGG	-	chr1_1:72039529-72039548	Msa0041620:intron	25.0%
!	AATTGACTAGGAATAAGTAA+AGG	+	chr1_1:72039687-72039706	None:intergenic	25.0%
!	TAATTAAACAGGAATTGACT+AGG	+	chr1_1:72039699-72039718	None:intergenic	25.0%
!!!	CTTAACTTTTTCAACCTTTA+TGG	+	chr1_1:72039749-72039768	None:intergenic	25.0%
!	CATAAAGGTTGAAAAAGTTA+AGG	-	chr1_1:72039747-72039766	Msa0041620:intron	25.0%
!!	AATATGACCTTTGAGAATTT+AGG	-	chr1_1:72039772-72039791	Msa0041620:intron	25.0%
!	AAAAACGTAAGTAAAGAAGA+AGG	-	chr1_1:72039886-72039905	Msa0041620:intron	25.0%
!	TGCAATCCATAAAATTGTAT+AGG	-	chr1_1:72039989-72040008	Msa0041620:intron	25.0%
!	TATAGGAATATTAAAGGGTA+TGG	-	chr1_1:72040006-72040025	Msa0041620:intron	25.0%
!!	ATAGGAATATTAAAGGGTAT+GGG	-	chr1_1:72040007-72040026	Msa0041620:intron	25.0%
!	ATAAAGAGGATATCAGAAAA+TGG	+	chr1_1:72040137-72040156	None:intergenic	25.0%
!	AACATTTAACCTCAAATCAA+CGG	+	chr1_1:72040368-72040387	None:intergenic	25.0%
!	ACATTATCTCTTTAGATCTA+CGG	+	chr1_1:72040523-72040542	None:intergenic	25.0%
!!	GAGCTTCTAAAAAATTATTG+TGG	-	chr1_1:72040644-72040663	Msa0041620:intron	25.0%
!!	AATTATCTCTGTTTTCCATT+CGG	-	chr1_1:72041371-72041390	Msa0041620:intron	25.0%
!!!	AAATTTGTTAGATTACCGAA+TGG	+	chr1_1:72041389-72041408	None:intergenic	25.0%
!!	TGATTTTCTATTGGGAAATT+TGG	+	chr1_1:72041448-72041467	None:intergenic	25.0%
!	TTATTACAAGCGTAATTACA+AGG	+	chr1_1:72041597-72041616	None:intergenic	25.0%
!	AGAATATTTGAAGAAAACAG+AGG	+	chr1_1:72041736-72041755	None:intergenic	25.0%
!	GCTTAATAAACTTATCCTAA+AGG	-	chr1_1:72042240-72042259	Msa0041620:five_prime_UTR	25.0%
	TTTGATTCTGAATGTAGTAG+TGG	-	chr1_1:72037203-72037222	Msa0041620:three_prime_UTR	30.0%
	TTGAAGTAAACATCATCATG+TGG	+	chr1_1:72037407-72037426	Msa0041610:intron	30.0%
!!	ATTTTTCAGACCAATGTTGT+TGG	-	chr1_1:72037689-72037708	Msa0041620:intron	30.0%
!!	TTTTTCAGACCAATGTTGTT+GGG	-	chr1_1:72037690-72037709	Msa0041620:intron	30.0%
	ACAAACCAACAAAGTTATGT+AGG	-	chr1_1:72037713-72037732	Msa0041620:intron	30.0%
	AATATGGTAGACTATTCACA+AGG	-	chr1_1:72037737-72037756	Msa0041620:intron	30.0%
	AAAAACCAAATTGTTCTTCC+TGG	+	chr1_1:72037891-72037910	Msa0041610:exon	30.0%
!!!	AGTTCATTTTTTGAGAGAGA+TGG	+	chr1_1:72037919-72037938	Msa0041610:three_prime_UTR	30.0%
	CTCTCAAAAAATGAACTTCA+AGG	-	chr1_1:72037922-72037941	Msa0041620:intron	30.0%
	ACAAGCTAATTTAGTTAGGA+AGG	-	chr1_1:72038246-72038265	Msa0041620:intron	30.0%
	GTAGATTCATCAAAATAACG+AGG	+	chr1_1:72038293-72038312	None:intergenic	30.0%
	AAGGGTGGTAAAAAACTTTA+CGG	+	chr1_1:72038739-72038758	None:intergenic	30.0%
!	AATTTAGTCACACACTGATT+AGG	-	chr1_1:72038835-72038854	Msa0041620:intron	30.0%
!	TTTTGCTTATATTTGTGACC+GGG	+	chr1_1:72038924-72038943	None:intergenic	30.0%
	GGAATTTGACAAAATTACGA+GGG	+	chr1_1:72039271-72039290	None:intergenic	30.0%
	AGGAATTTGACAAAATTACG+AGG	+	chr1_1:72039272-72039291	None:intergenic	30.0%
!	CGTAATTTTGTCAAATTCCT+AGG	-	chr1_1:72039272-72039291	Msa0041620:intron	30.0%
!!	ATATGGCAAAAGTGTTATGA+AGG	-	chr1_1:72039334-72039353	Msa0041620:intron	30.0%
!!	TATGGCAAAAGTGTTATGAA+GGG	-	chr1_1:72039335-72039354	Msa0041620:intron	30.0%
	GACAGTATACAAATATGATG+AGG	-	chr1_1:72039370-72039389	Msa0041620:intron	30.0%
	AGTATACAAATATGATGAGG+CGG	-	chr1_1:72039373-72039392	Msa0041620:intron	30.0%
	TTCCATTCCAACATCAATAT+TGG	+	chr1_1:72039404-72039423	None:intergenic	30.0%
	TTGTCATCCTAAATTCTCAA+AGG	+	chr1_1:72039782-72039801	None:intergenic	30.0%
	TAGTATATGAGAAAACACGT+GGG	+	chr1_1:72039820-72039839	None:intergenic	30.0%
!	TACGTGTTTGATTTCTCTTT+GGG	+	chr1_1:72039916-72039935	None:intergenic	30.0%
!	TTACGTGTTTGATTTCTCTT+TGG	+	chr1_1:72039917-72039936	None:intergenic	30.0%
	ATTACAACAAGGATAGATAG+AGG	+	chr1_1:72040083-72040102	None:intergenic	30.0%
	CCTCTATTACAATTACAACA+AGG	+	chr1_1:72040094-72040113	None:intergenic	30.0%
!	CCTTGTTGTAATTGTAATAG+AGG	-	chr1_1:72040091-72040110	Msa0041620:intron	30.0%
	TGTTGTAATTGTAATAGAGG+AGG	-	chr1_1:72040094-72040113	Msa0041620:intron	30.0%
!	TCAGAAAATGGACAAGTTTT+TGG	+	chr1_1:72040125-72040144	None:intergenic	30.0%
	AAAGTTATGTCAAGGGAATT+GGG	+	chr1_1:72040189-72040208	None:intergenic	30.0%
	AAAAGTTATGTCAAGGGAAT+TGG	+	chr1_1:72040190-72040209	None:intergenic	30.0%
	TCTCATGCTGTAAATGATTT+CGG	-	chr1_1:72040342-72040361	Msa0041620:intron	30.0%
	GAGGTTAAATGTTTCGATTT+CGG	-	chr1_1:72040375-72040394	Msa0041620:intron	30.0%
	CATTATCTCTTTAGATCTAC+GGG	+	chr1_1:72040522-72040541	None:intergenic	30.0%
!!	AGCTCAACAATAGTTCTAAA+CGG	-	chr1_1:72040586-72040605	Msa0041620:intron	30.0%
!	GACTATTGACTAAATGTGAA+GGG	+	chr1_1:72040701-72040720	None:intergenic	30.0%
	CTTCACATTTAGTCAATAGT+CGG	-	chr1_1:72040700-72040719	Msa0041620:intron	30.0%
	TATATGAAACGGAGTTCAAA+AGG	-	chr1_1:72040955-72040974	Msa0041620:intron	30.0%
	TCTTAAAGCAGAAAACAAGA+TGG	-	chr1_1:72040988-72041007	Msa0041620:intron	30.0%
	TAATGGTAGATCTCATTTGA+TGG	-	chr1_1:72041064-72041083	Msa0041620:intron	30.0%
	CTATTACTTTCATGCATTCT+TGG	+	chr1_1:72041157-72041176	None:intergenic	30.0%
!	CTTCACAAGTCTAACATTTT+TGG	-	chr1_1:72041299-72041318	Msa0041620:three_prime_UTR	30.0%
	GACCATATAGATATCTTACT+AGG	-	chr1_1:72041344-72041363	Msa0041620:intron	30.0%
	TGCCTAGTAAGATATCTATA+TGG	+	chr1_1:72041349-72041368	None:intergenic	30.0%
	TCTATTGGGAAATTTGGATA+TGG	+	chr1_1:72041442-72041461	None:intergenic	30.0%
!	ATTACTTTGAGTTCGTAGAA+GGG	+	chr1_1:72041574-72041593	None:intergenic	30.0%
!	TTAATCACAGTTTTTGTGTG+TGG	+	chr1_1:72041634-72041653	None:intergenic	30.0%
	AAATGACAAAGAGGTAAGTA+GGG	+	chr1_1:72041700-72041719	None:intergenic	30.0%
	AAAATGACAAAGAGGTAAGT+AGG	+	chr1_1:72041701-72041720	None:intergenic	30.0%
	AAGCAAACTAAAAAGAGAAG+AGG	+	chr1_1:72042224-72042243	None:intergenic	30.0%
	GAAAACACTAGATTCATAGG+TGG	-	chr1_1:72037266-72037285	Msa0041620:three_prime_UTR	35.0%
!	TGACTCTTTTGTCTTTGTGT+TGG	+	chr1_1:72037313-72037332	Msa0041610:CDS	35.0%
	GTCACAAATGAGTATTCTGA+AGG	-	chr1_1:72037329-72037348	Msa0041620:three_prime_UTR	35.0%
!	AAATGAGTATTCTGAAGGAG+TGG	-	chr1_1:72037334-72037353	Msa0041620:three_prime_UTR	35.0%
!	GTAGTGAAAAAGCACAAGAA+AGG	-	chr1_1:72037440-72037459	Msa0041620:three_prime_UTR	35.0%
	GGTACAAAGAAACAGAAAGT+TGG	-	chr1_1:72037461-72037480	Msa0041620:three_prime_UTR	35.0%
	TGTCATGAAGAAAAGAAGGA+AGG	+	chr1_1:72037523-72037542	Msa0041610:intron	35.0%
	AAATTGTTCTTCCTGGTATG+AGG	+	chr1_1:72037884-72037903	Msa0041610:CDS	35.0%
	TCATACCAGGAAGAACAATT+TGG	-	chr1_1:72037883-72037902	Msa0041620:intron	35.0%
!	TTCATTCTTTGTTTAGCAGC+TGG	-	chr1_1:72038033-72038052	Msa0041620:intron	35.0%
	ACAATCTCTTACTCAACCTT+CGG	-	chr1_1:72038532-72038551	Msa0041620:intron	35.0%
	ATACTTCCATTCCATGGATT+TGG	+	chr1_1:72038594-72038613	None:intergenic	35.0%
	GAACATATACTTCCATTCCA+TGG	+	chr1_1:72038600-72038619	None:intergenic	35.0%
	TTTGCTTATATTTGTGACCG+GGG	+	chr1_1:72038923-72038942	None:intergenic	35.0%
	TTACTTATATTTGTGACCGG+AGG	-	chr1_1:72039033-72039052	Msa0041620:intron	35.0%
	TACTTATATTTGTGACCGGA+GGG	-	chr1_1:72039034-72039053	Msa0041620:intron	35.0%
!!	CAAAAGTGTTATGAAGGGAT+GGG	-	chr1_1:72039340-72039359	Msa0041620:intron	35.0%
	GGAAATGCCAATATTGATGT+TGG	-	chr1_1:72039394-72039413	Msa0041620:intron	35.0%
	TGCCAATATTGATGTTGGAA+TGG	-	chr1_1:72039399-72039418	Msa0041620:intron	35.0%
!	TCAACTTTATCTCTTTTGGG+AGG	-	chr1_1:72039532-72039551	Msa0041620:intron	35.0%
!!!	CTTTTTCAACCTTTATGGAC+TGG	+	chr1_1:72039744-72039763	None:intergenic	35.0%
	AGTATATGAGAAAACACGTG+GGG	+	chr1_1:72039819-72039838	None:intergenic	35.0%
	CTAGTATATGAGAAAACACG+TGG	+	chr1_1:72039821-72039840	None:intergenic	35.0%
!!	CAATTTTATGGATTGCAGCT+AGG	+	chr1_1:72039986-72040005	None:intergenic	35.0%
	TGACCATTGCCAATTTAGTT+TGG	-	chr1_1:72040158-72040177	Msa0041620:intron	35.0%
	CATCCAAACTAAATTGGCAA+TGG	+	chr1_1:72040164-72040183	None:intergenic	35.0%
	TGGGAACATCCAAACTAAAT+TGG	+	chr1_1:72040170-72040189	None:intergenic	35.0%
	GTGCACAAAAGTTATGTCAA+GGG	+	chr1_1:72040196-72040215	None:intergenic	35.0%
	AGTGCACAAAAGTTATGTCA+AGG	+	chr1_1:72040197-72040216	None:intergenic	35.0%
	GTGTAGCACATTTATTTCCT+TGG	+	chr1_1:72040241-72040260	None:intergenic	35.0%
!	TTTGGTGTGACATAATGAGT+TGG	+	chr1_1:72040289-72040308	None:intergenic	35.0%
	CATTATGTCACACCAAAAAC+TGG	-	chr1_1:72040292-72040311	Msa0041620:intron	35.0%
	TATTGTTACACCATGCAGTA+GGG	+	chr1_1:72040492-72040511	None:intergenic	35.0%
	TTATTGTTACACCATGCAGT+AGG	+	chr1_1:72040493-72040512	None:intergenic	35.0%
!!	GCTCAACAATAGTTCTAAAC+GGG	-	chr1_1:72040587-72040606	Msa0041620:intron	35.0%
!!	GGTGGATTAGAAGCTATAAT+TGG	-	chr1_1:72040622-72040641	Msa0041620:intron	35.0%
	TGTGGGTAAACACTAACTTT+AGG	-	chr1_1:72040662-72040681	Msa0041620:intron	35.0%
	TAAACACTAACTTTAGGTGG+TGG	-	chr1_1:72040668-72040687	Msa0041620:intron	35.0%
!	CGACTATTGACTAAATGTGA+AGG	+	chr1_1:72040702-72040721	None:intergenic	35.0%
	GAACCAGTATCCAATTTCAT+TGG	+	chr1_1:72040851-72040870	None:intergenic	35.0%
	CTCATGACTTTGGATCAATT+CGG	+	chr1_1:72041020-72041039	None:intergenic	35.0%
!	GATCTACCATTATGTCACTT+AGG	+	chr1_1:72041056-72041075	None:intergenic	35.0%
	CATTGTCTTGAATATGACTC+TGG	+	chr1_1:72041229-72041248	None:intergenic	35.0%
	TGGCTAAACCTAATCTCATT+TGG	-	chr1_1:72041319-72041338	Msa0041620:CDS	35.0%
	ATGGTCATCCAAATGAGATT+AGG	+	chr1_1:72041330-72041349	None:intergenic	35.0%
!!	TGTTAGCTTTAAGCCAATCA+AGG	-	chr1_1:72041498-72041517	Msa0041620:CDS	35.0%
	AAGCTTTCAGAAGCAGAAAA+GGG	+	chr1_1:72041527-72041546	None:intergenic	35.0%
!	TTACTTTGAGTTCGTAGAAG+GGG	+	chr1_1:72041573-72041592	None:intergenic	35.0%
!	GATTACTTTGAGTTCGTAGA+AGG	+	chr1_1:72041575-72041594	None:intergenic	35.0%
	AATGACAAAGAGGTAAGTAG+GGG	+	chr1_1:72041699-72041718	None:intergenic	35.0%
	CAAGGAGAAAAATGACAAAG+AGG	+	chr1_1:72041709-72041728	None:intergenic	35.0%
	GAAGAAAACAGAGGAAAACA+AGG	+	chr1_1:72041727-72041746	None:intergenic	35.0%
!!!	CGACATGAACATGTTTTTAG+TGG	+	chr1_1:72041803-72041822	None:intergenic	35.0%
	TAATCAAATGTGACTGTGTC+AGG	-	chr1_1:72041876-72041895	Msa0041620:CDS	35.0%
	GTTAATGGCACTAACAGTTA+CGG	+	chr1_1:72042176-72042195	None:intergenic	35.0%
!	AACTGTTAGTGCCATTAACA+TGG	-	chr1_1:72042177-72042196	Msa0041620:CDS	35.0%
	TATAGGGCAAACCATGTTAA+TGG	+	chr1_1:72042191-72042210	None:intergenic	35.0%
	AGATTCATAGGTGGAACTGA+AGG	-	chr1_1:72037275-72037294	Msa0041620:three_prime_UTR	40.0%
	GATTCATAGGTGGAACTGAA+GGG	-	chr1_1:72037276-72037295	Msa0041620:three_prime_UTR	40.0%
	AGGAGTGGAAGATTTGTCTA+TGG	-	chr1_1:72037349-72037368	Msa0041620:three_prime_UTR	40.0%
	ATGGTTTCTGATGCTTCTTC+TGG	-	chr1_1:72037368-72037387	Msa0041620:three_prime_UTR	40.0%
	ACATCATCATGTGGAAGATG+TGG	+	chr1_1:72037398-72037417	Msa0041610:intron	40.0%
	GCAGTGTCATGAAGAAAAGA+AGG	+	chr1_1:72037527-72037546	Msa0041610:intron	40.0%
!!	TTGGTTTGTCCCAACAACAT+TGG	+	chr1_1:72037702-72037721	Msa0041610:intron	40.0%
!	TCTTTGTTTAGCAGCTGGTA+TGG	-	chr1_1:72038038-72038057	Msa0041620:intron	40.0%
	TGCAACAACTTCAATAGCAG+AGG	+	chr1_1:72038092-72038111	Msa0041610:three_prime_UTR	40.0%
	TGCTATTGAAGTTGTTGCAG+TGG	-	chr1_1:72038093-72038112	Msa0041620:intron	40.0%
	CACAATCCAAATCCATGGAA+TGG	-	chr1_1:72038585-72038604	Msa0041620:intron	40.0%
	GGTGGTAAAAAACTTTACGG+TGG	+	chr1_1:72038736-72038755	None:intergenic	40.0%
!	TAGTCACACACTGATTAGGT+AGG	-	chr1_1:72038839-72038858	Msa0041620:intron	40.0%
	TTGCTTATATTTGTGACCGG+GGG	+	chr1_1:72038922-72038941	None:intergenic	40.0%
	AAAGTGTATTGTACACCCTC+CGG	+	chr1_1:72039052-72039071	None:intergenic	40.0%
	CATGCATATTTGGATTGCCT+AGG	+	chr1_1:72039292-72039311	None:intergenic	40.0%
!!	GCAAAAGTGTTATGAAGGGA+TGG	-	chr1_1:72039339-72039358	Msa0041620:intron	40.0%
	CTTTGAGTCAGGAAGATATG+AGG	+	chr1_1:72039472-72039491	None:intergenic	40.0%
	CTCATATCTTCCTGACTCAA+AGG	-	chr1_1:72039470-72039489	Msa0041620:intron	40.0%
	ATTCTGCTACCAGTCCATAA+AGG	-	chr1_1:72039732-72039751	Msa0041620:intron	40.0%
!!	TTGGTTTGGTTTGGTTTGCA+TGG	+	chr1_1:72040059-72040078	None:intergenic	40.0%
	AACAAGGATAGATAGAGGCT+TGG	+	chr1_1:72040078-72040097	None:intergenic	40.0%
	TTGGCAATGGTCACATAAAG+AGG	+	chr1_1:72040151-72040170	None:intergenic	40.0%
!	GCATATCTCGATCCAGTTTT+TGG	+	chr1_1:72040307-72040326	None:intergenic	40.0%
	TGCAGTTCGACCTAAATCAA+CGG	+	chr1_1:72040401-72040420	None:intergenic	40.0%
	ATTGTTACACCATGCAGTAG+GGG	+	chr1_1:72040491-72040510	None:intergenic	40.0%
	AGAACTATTGTTGAGCTGCA+CGG	+	chr1_1:72040583-72040602	None:intergenic	40.0%
	CTAAACGGGCACTAATATCA+CGG	-	chr1_1:72040601-72040620	Msa0041620:intron	40.0%
	GGGTAAACACTAACTTTAGG+TGG	-	chr1_1:72040665-72040684	Msa0041620:intron	40.0%
	GTCAATAGTCGGTGACAATT+TGG	-	chr1_1:72040711-72040730	Msa0041620:intron	40.0%
	TACACGAGTGCCAATGAAAT+TGG	-	chr1_1:72040838-72040857	Msa0041620:intron	40.0%
	GTGCCAATGAAATTGGATAC+TGG	-	chr1_1:72040845-72040864	Msa0041620:intron	40.0%
	ATTGATCCAAAGTCATGAGC+AGG	-	chr1_1:72041021-72041040	Msa0041620:intron	40.0%
	CGCAAACCTAAGTGACATAA+TGG	-	chr1_1:72041047-72041066	Msa0041620:intron	40.0%
!!	CAGAAAAGGGTATCCTTGAT+TGG	+	chr1_1:72041514-72041533	None:intergenic	40.0%
	GAAGCTTTCAGAAGCAGAAA+AGG	+	chr1_1:72041528-72041547	None:intergenic	40.0%
!	TACTTTGAGTTCGTAGAAGG+GGG	+	chr1_1:72041572-72041591	None:intergenic	40.0%
	CTGAATATATGCGTGACTTC+TGG	+	chr1_1:72041915-72041934	None:intergenic	40.0%
!	AGAAGTGATGACGCTACATA+GGG	-	chr1_1:72041933-72041952	Msa0041620:CDS	40.0%
	AACATGGAATTTGGAAGGAG+AGG	+	chr1_1:72042076-72042095	None:intergenic	40.0%
	TCTCCTTCCAAATTCCATGT+TGG	-	chr1_1:72042075-72042094	Msa0041620:CDS	40.0%
	ATTATGAACTGCCTGCACAT+TGG	-	chr1_1:72042132-72042151	Msa0041620:CDS	40.0%
	AAGAGGCGATGAGTTCTATA+GGG	+	chr1_1:72042207-72042226	None:intergenic	40.0%
!!	TGTAGTAGTGGATGTGAGTC+AGG	-	chr1_1:72037215-72037234	Msa0041620:three_prime_UTR	45.0%
	TCATCATGTGGAAGATGTGG+AGG	+	chr1_1:72037395-72037414	Msa0041610:intron	45.0%
	GTAGGGAAAATCCTCATACC+AGG	-	chr1_1:72037870-72037889	Msa0041620:intron	45.0%
	TTGTTTAGCAGCTGGTATGG+AGG	-	chr1_1:72038041-72038060	Msa0041620:intron	45.0%
	GCATGCACAATCCAAATCCA+TGG	-	chr1_1:72038580-72038599	Msa0041620:intron	45.0%
!!	TATGCTCTAAAGTACACCCC+CGG	-	chr1_1:72038903-72038922	Msa0041620:intron	45.0%
	AACGCATGTTCCTTTGAGTC+AGG	+	chr1_1:72039483-72039502	None:intergenic	45.0%
!!	GTTTGGTTTGGTTTGCATGG+TGG	+	chr1_1:72040056-72040075	None:intergenic	45.0%
!!	GATAGAGGCTTGGTTTGGTT+TGG	+	chr1_1:72040068-72040087	None:intergenic	45.0%
!	GGATAGATAGAGGCTTGGTT+TGG	+	chr1_1:72040073-72040092	None:intergenic	45.0%
	CACTTGAAAGCTCTATGCCA+AGG	-	chr1_1:72040221-72040240	Msa0041620:intron	45.0%
!!	TGATTTCGGCCGTTGATTTG+AGG	-	chr1_1:72040356-72040375	Msa0041620:intron	45.0%
!!	TCGATTTCGGCCGTTGATTT+AGG	-	chr1_1:72040388-72040407	Msa0041620:intron	45.0%
	AATGTTGATCCCCTACTGCA+TGG	-	chr1_1:72040479-72040498	Msa0041620:intron	45.0%
	GCTTCTGTTGCTAACACTTG+TGG	-	chr1_1:72040771-72040790	Msa0041620:intron	45.0%
	TGACTGTGTCAGGTCAATGT+CGG	-	chr1_1:72041886-72041905	Msa0041620:CDS	45.0%
!	CAGAAGTGATGACGCTACAT+AGG	-	chr1_1:72041932-72041951	Msa0041620:CDS	45.0%
	AGAAGCAATGTCCTTGACTC+AGG	-	chr1_1:72042001-72042020	Msa0041620:CDS	45.0%
	GAAGCAATGTCCTTGACTCA+GGG	-	chr1_1:72042002-72042021	Msa0041620:CDS	45.0%
	CCACCAACATGGAATTTGGA+AGG	+	chr1_1:72042081-72042100	None:intergenic	45.0%
	CCTTCCAAATTCCATGTTGG+TGG	-	chr1_1:72042078-72042097	Msa0041620:CDS	45.0%
	AGCACCACCAACATGGAATT+TGG	+	chr1_1:72042085-72042104	None:intergenic	45.0%
!!	TTTGAGAAGCACCACCAACA+TGG	+	chr1_1:72042092-72042111	None:intergenic	45.0%
!!	TTGGTGGTGCTTCTCAAAGT+TGG	-	chr1_1:72042094-72042113	Msa0041620:CDS	45.0%
!	TGGTGGTGCTTCTCAAAGTT+GGG	-	chr1_1:72042095-72042114	Msa0041620:CDS	45.0%
	GTATGCATCATCCAATGTGC+AGG	+	chr1_1:72042146-72042165	None:intergenic	45.0%
	GAAGAGGCGATGAGTTCTAT+AGG	+	chr1_1:72042208-72042227	None:intergenic	45.0%
!!	GTAGTGGATGTGAGTCAGGT+TGG	-	chr1_1:72037219-72037238	Msa0041620:three_prime_UTR	50.0%
!!	GGTGGAACTGAAGGGTACTA+TGG	-	chr1_1:72037284-72037303	Msa0041620:three_prime_UTR	50.0%
	GAGTCAGGAAGATATGAGGC+AGG	+	chr1_1:72039468-72039487	None:intergenic	50.0%
	TCCAAACAGACAGGCTTGGA+GGG	+	chr1_1:72039611-72039630	None:intergenic	50.0%
	TTCCAAACAGACAGGCTTGG+AGG	+	chr1_1:72039612-72039631	None:intergenic	50.0%
	AGCTTCCAAACAGACAGGCT+TGG	+	chr1_1:72039615-72039634	None:intergenic	50.0%
	GTGACAGCTTCCAAACAGAC+AGG	+	chr1_1:72039620-72039639	None:intergenic	50.0%
!!	GGTTTGGTTTGCATGGTGGT+TGG	+	chr1_1:72040052-72040071	None:intergenic	50.0%
	AACGGGCACTAATATCACGG+TGG	-	chr1_1:72040604-72040623	Msa0041620:intron	50.0%
	GCGTATCCTGCTCATGACTT+TGG	+	chr1_1:72041030-72041049	None:intergenic	50.0%
	GTTTGCAAGGAAAGGAGGAG+GGG	+	chr1_1:72041550-72041569	None:intergenic	50.0%
	GGTTTGCAAGGAAAGGAGGA+GGG	+	chr1_1:72041551-72041570	None:intergenic	50.0%
	AGAAGGGGGTTTGCAAGGAA+AGG	+	chr1_1:72041558-72041577	None:intergenic	50.0%
	TTCGTAGAAGGGGGTTTGCA+AGG	+	chr1_1:72041563-72041582	None:intergenic	50.0%
	TCAGCGTCGTGTTCTCTCAT+AGG	+	chr1_1:72041831-72041850	None:intergenic	50.0%
	TCCCTCCAAGCCTGTCTGTT+TGG	-	chr1_1:72039607-72039626	Msa0041620:intron	55.0%
	GCTGCACGGTGCAACAGTTA+TGG	+	chr1_1:72040569-72040588	None:intergenic	55.0%
	GGGTTTGCAAGGAAAGGAGG+AGG	+	chr1_1:72041552-72041571	None:intergenic	55.0%
	AGGGGGTTTGCAAGGAAAGG+AGG	+	chr1_1:72041555-72041574	None:intergenic	55.0%
	CAACGCAAGACCCTGAGTCA+AGG	+	chr1_1:72042015-72042034	None:intergenic	55.0%
	TGACTCAGGGTCTTGCGTTG+CGG	-	chr1_1:72042015-72042034	Msa0041620:CDS	55.0%
	TTGCGTTGCGGTTGTGGTTG+CGG	-	chr1_1:72042027-72042046	Msa0041620:CDS	55.0%
	TGTGGTTGCGGCGATAACAG+TGG	-	chr1_1:72042039-72042058	Msa0041620:CDS	55.0%
	AGGGTCTTGCGTTGCGGTTG+TGG	-	chr1_1:72042021-72042040	Msa0041620:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	72037130	72042271	72037130	ID=Msa0041620;Name=Msa0041620
chr1_1	mRNA	72037130	72042271	72037130	ID=Msa0041620-mRNA-1;Parent=Msa0041620;Name=Msa0041620-mRNA-1;_AED=0.15;_eAED=0.15;_QI=64\|1\|1\|1\|0.75\|0.6\|5\|413\|191
chr1_1	exon	72037130	72037496	72037130	ID=Msa0041620-mRNA-1:exon:23942;Parent=Msa0041620-mRNA-1
chr1_1	exon	72041273	72041349	72041273	ID=Msa0041620-mRNA-1:exon:23941;Parent=Msa0041620-mRNA-1
chr1_1	exon	72041451	72041527	72041451	ID=Msa0041620-mRNA-1:exon:23940;Parent=Msa0041620-mRNA-1
chr1_1	exon	72041617	72041703	72041617	ID=Msa0041620-mRNA-1:exon:23939;Parent=Msa0041620-mRNA-1
chr1_1	exon	72041827	72042271	72041827	ID=Msa0041620-mRNA-1:exon:23938;Parent=Msa0041620-mRNA-1
chr1_1	five_prime_UTR	72042208	72042271	72042208	ID=Msa0041620-mRNA-1:five_prime_utr;Parent=Msa0041620-mRNA-1
chr1_1	CDS	72041827	72042207	72041827	ID=Msa0041620-mRNA-1:cds;Parent=Msa0041620-mRNA-1
chr1_1	CDS	72041617	72041703	72041617	ID=Msa0041620-mRNA-1:cds;Parent=Msa0041620-mRNA-1
chr1_1	CDS	72041451	72041527	72041451	ID=Msa0041620-mRNA-1:cds;Parent=Msa0041620-mRNA-1
chr1_1	CDS	72041319	72041349	72041319	ID=Msa0041620-mRNA-1:cds;Parent=Msa0041620-mRNA-1
chr1_1	three_prime_UTR	72041273	72041318	72041273	ID=Msa0041620-mRNA-1:three_prime_utr;Parent=Msa0041620-mRNA-1
chr1_1	three_prime_UTR	72037130	72037496	72037130	ID=Msa0041620-mRNA-1:three_prime_utr;Parent=Msa0041620-mRNA-1

Gene Sequence

>Msa0041620

ATGAGTGCATTTGATTCTGAATGTAGTAGTGGATGTGAGTCAGGTTGGACTCTATACCTTGAACATTCTTATGAAAACACTAGATTCATAGGTGGAACTGAAGGGTACTATGGAAACCAACACAAAGACAAAAGAGTCACAAATGAGTATTCTGAAGGAGTGGAAGATTTGTCTATGGTTTCTGATGCTTCTTCTGGTCCTCCACATCTTCCACATGATGATGTTTACTTCAATGAGAAAGACAATGTAGTGAAAAAGCACAAGAAAGGTACAAAGAAACAGAAAGTTGGAGAAAATAAACAACATGATGTTGAAGATCAACAACACCTTCCTTCTTTTCTTCATGACACTGCTAGCTCTCATGTCTTTGACTTTTCAACTACCAATGTTGTTGGGACAAACCAACAAAGTTATGTAGGAAATATGGTAGACTATTCACAAGGTTTTTCAGCAACTAATTATTTTGAGGGAAAATCCTCATACCAGGAAGAACAATTTGGTTTTTTACAACCATCTCTCTCAAAAAATGAACTTCAAGGAAACAACTGGTATGGAGGAAAAAATCAGTTCTATTAA

Protein sequence

>Msa0041620

MSAFDSECSSGCESGWTLYLEHSYENTRFIGGTEGYYGNQHKDKRVTNEYSEGVEDLSMVSDASSGPPHLPHDDVYFNEKDNVVKKHKKGTKKQKVGENKQHDVEDQQHLPSFLHDTASSHVFDFSTTNVVGTNQQSYVGNMVDYSQGFSATNYFEGKSSYQEEQFGFLQPSLSKNELQGNNWYGGKNQFY*