AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163090 MtrunA17_Chr7g0258941 97.143 210 4 1 1 208 69 278 6.01e-156 434
Msa1163090 MtrunA17_Chr1g0175721 84.286 210 31 1 1 208 68 277 2.48e-135 381
Msa1163090 MtrunA17_Chr3g0083571 75.714 210 49 1 1 208 63 272 7.75e-122 347
Msa1163090 MtrunA17_Chr3g0126851 76.190 210 48 1 1 208 70 279 1.39e-121 347
Msa1163090 MtrunA17_Chr1g0147041 76.667 210 47 1 1 208 78 287 7.29e-121 345
Msa1163090 MtrunA17_Chr8g0346801 75.238 210 50 1 1 208 54 263 4.18e-120 343
Msa1163090 MtrunA17_Chr8g0352701 72.381 210 56 1 1 208 63 272 1.08e-117 337
Msa1163090 MtrunA17_Chr7g0275701 74.286 210 52 1 1 208 71 280 1.15e-117 337
Msa1163090 MtrunA17_Chr5g0433631 27.041 196 131 5 4 197 46 231 9.52e-18 80.1
Msa1163090 MtrunA17_Chr4g0051351 28.500 200 128 6 4 200 110 297 1.06e-16 77.0
Msa1163090 MtrunA17_Chr7g0223111 25.510 196 134 5 4 197 50 235 1.94e-16 76.6
Msa1163090 MtrunA17_Chr5g0428191 25.888 197 134 5 4 198 24 210 1.33e-14 71.2
Msa1163090 MtrunA17_Chr5g0433411 25.243 206 142 6 4 207 47 242 8.59e-14 68.9
Msa1163090 MtrunA17_Chr5g0424971 24.638 207 141 8 4 207 31 225 2.96e-13 67.4
Msa1163090 MtrunA17_Chr5g0433541 28.358 201 122 7 4 197 24 209 3.13e-13 66.6
Msa1163090 MtrunA17_Chr5g0433551 28.358 201 122 7 4 197 24 209 3.13e-13 66.6
Msa1163090 MtrunA17_Chr2g0298951 31.858 113 70 3 7 114 9 119 1.12e-12 65.5
Msa1163090 MtrunA17_Chr5g0433531 27.411 197 131 5 4 198 24 210 1.54e-12 65.1
Msa1163090 MtrunA17_Chr7g0259431 28.477 151 100 4 7 155 9 153 4.69e-12 63.5
Msa1163090 MtrunA17_Chr5g0433521 27.152 151 102 4 7 155 23 167 1.58e-11 62.4
Msa1163090 MtrunA17_Chr5g0433661 26.531 196 132 6 4 197 58 243 9.34e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163090 AT3G58040.1 84.762 210 30 1 1 208 67 276 2.55e-136 384
Msa1163090 AT3G58040.3 84.762 210 30 1 1 208 67 276 2.55e-136 384
Msa1163090 AT2G41980.1 83.810 210 32 1 1 208 64 273 9.86e-136 382
Msa1163090 AT3G61790.1 76.190 210 48 1 1 208 70 279 8.44e-122 348
Msa1163090 AT4G27880.1 74.286 210 52 1 1 208 71 280 5.22e-120 343
Msa1163090 AT5G53360.1 72.093 172 46 1 39 208 15 186 4.60e-93 272
Msa1163090 AT5G53360.3 72.093 172 46 1 39 208 15 186 4.60e-93 272
Msa1163090 AT3G58040.2 83.942 137 20 1 1 135 67 203 1.22e-83 247
Msa1163090 AT3G13672.1 51.205 166 80 1 43 208 13 177 1.35e-58 184
Msa1163090 AT3G13672.2 44.560 193 79 2 43 208 13 204 6.65e-53 170
Msa1163090 AT5G53360.2 68.919 74 23 0 135 208 60 133 9.01e-35 122
Msa1163090 AT5G37870.1 27.885 208 138 7 4 206 55 255 2.01e-17 79.0
Msa1163090 AT5G37930.1 37.288 118 69 3 4 119 123 237 2.47e-16 76.6
Msa1163090 AT5G37890.1 27.604 192 126 5 4 191 61 243 1.65e-13 68.2
Msa1163090 AT5G37910.1 35.455 110 67 2 1 108 45 152 2.29e-12 64.7
Msa1163090 AT1G66620.1 33.962 106 66 2 1 104 51 154 4.87e-12 64.3
Msa1163090 AT1G66650.1 33.333 117 73 3 1 114 93 207 1.72e-11 62.8
Msa1163090 AT1G66660.2 35.714 98 59 2 4 99 116 211 2.31e-11 62.4

Find 100 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGTTTAATTTGAAATT+TGG 0.101021 7_4:+54156243 None:intergenic
TATGGCCTTCTTACGGTTTA+TGG 0.117780 7_4:-54152813 Msa1163090:CDS
TTATTGTATGAAGGATATTT+TGG 0.246908 7_4:-54152316 Msa1163090:three_prime_UTR
AAACTCAAAGCTAAAGAAAT+TGG 0.250381 7_4:-54154676 Msa1163090:five_prime_UTR
GTGTTTGTTGGTATCGATTA+TGG 0.251697 7_4:+54156085 None:intergenic
ATTTGTTTAATTTGAAATTT+GGG 0.258370 7_4:+54156244 None:intergenic
TGAGAATCACCGGTCGTATA+TGG 0.277771 7_4:-54152599 Msa1163090:three_prime_UTR
TTCAATTCCACACATCTTAG+AGG 0.289979 7_4:-54152417 Msa1163090:three_prime_UTR
GGAGAAAGTGGCGGAATCTT+TGG 0.289986 7_4:-54153950 Msa1163090:CDS
GACAGGTGGGACAGAGATTA+TGG 0.312010 7_4:+54154007 None:intergenic
CATATGGGCGCAAACTTATA+TGG 0.315205 7_4:-54152742 Msa1163090:CDS
AGCTTAGAAGTCGGTGCATA+TGG 0.322324 7_4:-54152758 Msa1163090:CDS
ATGGCCTTCTTACGGTTTAT+GGG 0.324454 7_4:-54152812 Msa1163090:CDS
TTTCTTGACTCGCTGGATCT+TGG 0.328460 7_4:-54154978 Msa1163090:five_prime_UTR
CCCACCTGTCACCATGATCT+TGG 0.343411 7_4:-54153994 Msa1163090:CDS
GCATTTCTGTTTGCACTTTG+AGG 0.351473 7_4:-54152864 Msa1163090:CDS
TGTTTAAGCTTTGCATAGTA+AGG 0.352415 7_4:+54153883 None:intergenic
ACCATGATCTTGGGAATATA+AGG 0.354435 7_4:-54153984 Msa1163090:CDS
CACTTTGAGGCTTTCCAGCT+TGG 0.356658 7_4:-54152851 Msa1163090:CDS
TCCACTAGTGTTGGATTGAA+TGG 0.361198 7_4:-54154512 Msa1163090:five_prime_UTR
GAATATAAGGTGTTTGGCTC+TGG 0.367722 7_4:-54153971 Msa1163090:CDS
TTGACTTCAGATTATGAAAC+AGG 0.369439 7_4:-54154578 Msa1163090:five_prime_UTR
TGTAAGTGTACAGTTAATCT+TGG 0.383421 7_4:+54154538 None:intergenic
TCAAATTATTTATTGTATGA+AGG 0.396071 7_4:-54152325 Msa1163090:three_prime_UTR
AAGTGTTGGCCAGAGACTTT+GGG 0.405218 7_4:-54154920 Msa1163090:five_prime_UTR
GAACATAACGTATGGCCATT+TGG 0.409073 7_4:+54154048 None:intergenic
TATCCTAGGGAAACTCTATA+AGG 0.411434 7_4:-54154870 Msa1163090:intron
TCTTGGGAATATAAGGTGTT+TGG 0.412899 7_4:-54153977 Msa1163090:CDS
TAAGTGTTGGCCAGAGACTT+TGG 0.430089 7_4:-54154921 Msa1163090:five_prime_UTR
CCACCTGTCACCATGATCTT+GGG 0.439936 7_4:-54153993 Msa1163090:CDS
CATTGTATAGAGCTTATTAC+GGG 0.448456 7_4:-54152513 Msa1163090:three_prime_UTR
TCATTGTATAGAGCTTATTA+CGG 0.450666 7_4:-54152514 Msa1163090:three_prime_UTR
CCTTTAGATCGGATCAGAAA+TGG 0.457706 7_4:-54154645 Msa1163090:five_prime_UTR
ACATTCACGCCCAAAGTCTC+TGG 0.460889 7_4:+54154911 None:intergenic
CCATACAATTGTCCCTATGC+TGG 0.460910 7_4:-54153838 Msa1163090:CDS
TACTCGTGCTAGATTATCCT+AGG 0.462366 7_4:-54154884 Msa1163090:five_prime_UTR
CCATTTCTGATCCGATCTAA+AGG 0.471216 7_4:+54154645 None:intergenic
AAGCAGTGCACCTGGTGAAT+TGG 0.478324 7_4:+54154414 None:intergenic
CCAGCATAGGGACAATTGTA+TGG 0.489704 7_4:+54153838 None:intergenic
GGATCTGAGTGCTCCGTGAT+GGG 0.492368 7_4:-54153817 Msa1163090:CDS
ATCTTCTTTCCATATACGAC+CGG 0.495873 7_4:+54152590 None:intergenic
CTTAAACATGAGCAAAATTG+TGG 0.498784 7_4:-54153868 Msa1163090:CDS
CTTACAAAATCCACTAGTGT+TGG 0.503995 7_4:-54154521 Msa1163090:five_prime_UTR
TGGATCTGAGTGCTCCGTGA+TGG 0.504556 7_4:-54153818 Msa1163090:CDS
TCAGAAATGGCTCCGGGAGG+AGG 0.504929 7_4:-54154632 Msa1163090:five_prime_UTR
TTATATGGCAAGGAATTCCT+AGG 0.506193 7_4:-54152727 Msa1163090:CDS
TACAATTTGAACATAACGTA+TGG 0.506717 7_4:+54154040 None:intergenic
TGACTGTCGCGTATGCTCCT+AGG 0.511842 7_4:+54152710 None:intergenic
ATCTCTTGTTGATCATCTCA+AGG 0.513200 7_4:-54153785 Msa1163090:CDS
ATCGGATCAGAAATGGCTCC+GGG 0.513632 7_4:-54154638 Msa1163090:five_prime_UTR
CAGTGCACCTGGTGAATTGG+AGG 0.518998 7_4:+54154417 None:intergenic
ACCTTATATTCCCAAGATCA+TGG 0.520727 7_4:+54153983 None:intergenic
GATCGGATCAGAAATGGCTC+CGG 0.522089 7_4:-54154639 Msa1163090:five_prime_UTR
AAACAACAACGTTGTTGTGT+TGG 0.523776 7_4:-54156126 Msa1163090:five_prime_UTR
GTTTAAGCTTTGCATAGTAA+GGG 0.527406 7_4:+54153884 None:intergenic
AAACTGGAGCTGTACCAAGC+TGG 0.527478 7_4:+54152837 None:intergenic
TCCACACATCTTAGAGGTGA+GGG 0.527827 7_4:-54152411 Msa1163090:three_prime_UTR
TCCATTCAATCCAACACTAG+TGG 0.529508 7_4:+54154511 None:intergenic
TGGAAAGAAATCCTTTAGAT+CGG 0.531076 7_4:-54154656 Msa1163090:five_prime_UTR
TGTGTGTTTCAGTGTCCAAA+TGG 0.537348 7_4:-54154063 Msa1163090:intron
TTGAGATGATCAACAAGAGA+TGG 0.537565 7_4:+54153787 None:intergenic
ATTTCTTACATGTTAAGTGT+TGG 0.537594 7_4:-54154934 Msa1163090:five_prime_UTR
GTGTTTGGCTCTGGAGAAAG+TGG 0.543736 7_4:-54153962 Msa1163090:CDS
TTTGACATATCGATGATTGA+AGG 0.543895 7_4:+54153729 None:intergenic
AATGGTGTGCATGACTTACT+CGG 0.545764 7_4:-54154467 Msa1163090:five_prime_UTR
CACGGAACTAGTTCAAAGAA+TGG 0.551902 7_4:-54154485 Msa1163090:five_prime_UTR
TACATCAAATTGTTGCAGAC+AGG 0.558554 7_4:+54154441 None:intergenic
ATTCCCAAGATCATGGTGAC+AGG 0.559471 7_4:+54153990 None:intergenic
TGGTTTGATTGATGGTTCCA+AGG 0.561903 7_4:-54155657 Msa1163090:intron
CCCAAGATCATGGTGACAGG+TGG 0.563063 7_4:+54153993 None:intergenic
ATCGCCCATAAACCGTAAGA+AGG 0.570793 7_4:+54152808 None:intergenic
CACAAGGTTGACATGCATGA+TGG 0.576711 7_4:-54153757 Msa1163090:CDS
TTCAGTTACAGCTTAGAAGT+CGG 0.578117 7_4:-54152767 Msa1163090:CDS
TCTTTGAAAATACCTCCTCC+CGG 0.578930 7_4:+54154620 None:intergenic
TAAAAGTGAAAGAAAGCTGA+AGG 0.579210 7_4:+54152373 None:intergenic
AAAACGAAGTCACAATTCAA+AGG 0.583618 7_4:-54152271 None:intergenic
GAGTTGAAATTGAGAATCAC+CGG 0.584234 7_4:-54152609 Msa1163090:three_prime_UTR
TTCCACACATCTTAGAGGTG+AGG 0.584877 7_4:-54152412 Msa1163090:three_prime_UTR
TTTCATAATCTGAAGTCAAG+AGG 0.592761 7_4:+54154582 None:intergenic
ATACCTTATAGAGTTTCCCT+AGG 0.597802 7_4:+54154867 None:intergenic
GCTTAGAAGTCGGTGCATAT+GGG 0.598441 7_4:-54152757 Msa1163090:CDS
GAGCACTCAGATCCAGCATA+GGG 0.606589 7_4:+54153826 None:intergenic
CAAGATGACTAATAATTCAG+AGG 0.611847 7_4:-54152668 Msa1163090:exon
GATGTATCCTCCAATTCACC+AGG 0.614890 7_4:-54154424 Msa1163090:intron
GGGCGCAAACTTATATGGCA+AGG 0.619069 7_4:-54152737 Msa1163090:CDS
GGAGCACTCAGATCCAGCAT+AGG 0.620419 7_4:+54153825 None:intergenic
ACCCTCACCTCTAAGATGTG+TGG 0.620792 7_4:+54152410 None:intergenic
CCAAGATCATGGTGACAGGT+GGG 0.628103 7_4:+54153994 None:intergenic
AGATGGAATGTCGCCCATCA+CGG 0.630084 7_4:+54153804 None:intergenic
TAATAATGTATTAAGCGTGA+AGG 0.632431 7_4:-54152549 Msa1163090:three_prime_UTR
TTCAGATTATGAAACAGGCA+AGG 0.651216 7_4:-54154573 Msa1163090:five_prime_UTR
GTTGGATTGAATGGAAAGCA+CGG 0.653878 7_4:-54154503 Msa1163090:five_prime_UTR
ATGGTGTGCATGACTTACTC+GGG 0.659438 7_4:-54154466 Msa1163090:five_prime_UTR
CCTAGACTCTGATATCTGCA+AGG 0.660946 7_4:+54153922 None:intergenic
TCATCTCAAGGATGAACACA+AGG 0.664179 7_4:-54153773 Msa1163090:CDS
ACTCGTGCTAGATTATCCTA+GGG 0.666126 7_4:-54154883 Msa1163090:five_prime_UTR
TTTGGCTCTGGAGAAAGTGG+CGG 0.674324 7_4:-54153959 Msa1163090:CDS
ATGAAGTTGAAAATGCCACA+TGG 0.708825 7_4:-54153696 Msa1163090:CDS
ACTTACAGTGAGCATCCATG+TGG 0.726222 7_4:+54153681 None:intergenic
GGATCAGAAATGGCTCCGGG+AGG 0.729551 7_4:-54154635 Msa1163090:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAACAAATAAAAATT+CGG + chr7_4:54152931-54152950 None:intergenic 10.0%
!!! TTTATTTGTTTCTATAATTT+TGG - chr7_4:54152935-54152954 Msa1163090:intron 10.0%
!! ATAAAAACATAATGCAAAAA+TGG + chr7_4:54152512-54152531 None:intergenic 15.0%
!! GCAAAATTAAATTATATTTG+TGG - chr7_4:54153351-54153370 Msa1163090:intron 15.0%
!!! ATGTAAGAAATAACTATTTT+TGG + chr7_4:54153573-54153592 None:intergenic 15.0%
!!! ATTAAAAAGTATTGTAATCT+TGG + chr7_4:54155024-54155043 None:intergenic 15.0%
!! TACTTCAAATATTTATTAGT+TGG + chr7_4:54155549-54155568 None:intergenic 15.0%
!! TCAAATTATTTATTGTATGA+AGG - chr7_4:54156191-54156210 Msa1163090:five_prime_UTR 15.0%
!!! TATTTGATATTTTGTTGACA+TGG - chr7_4:54152614-54152633 Msa1163090:three_prime_UTR 20.0%
!! TCAAATTGTGATTCTATTTA+TGG - chr7_4:54152738-54152757 Msa1163090:CDS 20.0%
!!! ATAATTTTGGTTCTGTTTTA+TGG - chr7_4:54152948-54152967 Msa1163090:intron 20.0%
!! ATTTAAATGTAGAAGAGATA+TGG - chr7_4:54152974-54152993 Msa1163090:intron 20.0%
!!! GATAAAAACCTTTAGTTTAT+AGG - chr7_4:54154322-54154341 Msa1163090:intron 20.0%
!!! ACAATATTGGTAACTATTAT+TGG + chr7_4:54154388-54154407 None:intergenic 20.0%
!! AATTTAGCAGATTACAATAT+TGG + chr7_4:54154401-54154420 None:intergenic 20.0%
!!! ATTTAATTTTACGTTCACAA+TGG - chr7_4:54154973-54154992 Msa1163090:five_prime_UTR 20.0%
!!! TAATAAAAACTTGCTTCTAT+TGG - chr7_4:54155040-54155059 Msa1163090:intron 20.0%
!!! TTATTGTATGAAGGATATTT+TGG - chr7_4:54156200-54156219 Msa1163090:five_prime_UTR 20.0%
!! AAAAAAAAGTGTGTGTTTGT+TGG + chr7_4:54152446-54152465 None:intergenic 25.0%
! TAATGCAAAAATGGAACATT+TGG + chr7_4:54152503-54152522 None:intergenic 25.0%
!!! TTTTTGTTTTTTCCCTTGAT+TGG - chr7_4:54152654-54152673 Msa1163090:three_prime_UTR 25.0%
!!! TTTTTGTTTGGTTTGATTGA+TGG - chr7_4:54152851-54152870 Msa1163090:CDS 25.0%
! ATTTCTTACATGTTAAGTGT+TGG - chr7_4:54153582-54153601 Msa1163090:intron 25.0%
!!! TAGCTTTGAGTTTATTTTTG+TGG + chr7_4:54153833-54153852 None:intergenic 25.0%
! AAACTCAAAGCTAAAGAAAT+TGG - chr7_4:54153840-54153859 Msa1163090:CDS 25.0%
! TTTATCTGTTTATTATCGCT+TGG + chr7_4:54154308-54154327 None:intergenic 25.0%
! GTGAAATACCTATAAACTAA+AGG + chr7_4:54154333-54154352 None:intergenic 25.0%
! TACAATTTGAACATAACGTA+TGG + chr7_4:54154479-54154498 None:intergenic 25.0%
! TCTATTGAACAAAACAAGTA+TGG + chr7_4:54154999-54155018 None:intergenic 25.0%
!!! ATACTTGTTTTGTTCAATAG+AGG - chr7_4:54154998-54155017 Msa1163090:intron 25.0%
! TCTATATTCAATACTTAGTG+AGG + chr7_4:54155173-54155192 None:intergenic 25.0%
! ATAAAACCATGCAACTAAAT+TGG + chr7_4:54155263-54155282 None:intergenic 25.0%
! TAGACTAGAAGTTAAAAATG+AGG + chr7_4:54155385-54155404 None:intergenic 25.0%
! TTACAAATGTAACAAATCAG+AGG - chr7_4:54155409-54155428 Msa1163090:intron 25.0%
! TACAAATGTAACAAATCAGA+GGG - chr7_4:54155410-54155429 Msa1163090:intron 25.0%
!! AAAGAATTTGAAATGCAAGA+GGG + chr7_4:54155603-54155622 None:intergenic 25.0%
! TAATAATGTATTAAGCGTGA+AGG - chr7_4:54155967-54155986 Msa1163090:intron 25.0%
! TCATTGTATAGAGCTTATTA+CGG - chr7_4:54156002-54156021 Msa1163090:intron 25.0%
!!! CAAACACACACTTTTTTTTC+TGG - chr7_4:54152447-54152466 Msa1163090:three_prime_UTR 30.0%
!!! TTTATTGTTTTTGACACGCA+TGG - chr7_4:54152550-54152569 Msa1163090:three_prime_UTR 30.0%
GCATGGATATAAATAAGACT+TGG - chr7_4:54152567-54152586 Msa1163090:three_prime_UTR 30.0%
TAAGACTTGGAATTCTCAAT+TGG - chr7_4:54152580-54152599 Msa1163090:three_prime_UTR 30.0%
AAGACTTGGAATTCTCAATT+GGG - chr7_4:54152581-54152600 Msa1163090:three_prime_UTR 30.0%
!!! TTCACTTGCTGACTTTTTAT+TGG - chr7_4:54152711-54152730 Msa1163090:CDS 30.0%
!! GTTTTGTTCCAGTTTTTGTT+TGG - chr7_4:54152839-54152858 Msa1163090:CDS 30.0%
CAATCAAACCAAACAAAAAC+TGG + chr7_4:54152850-54152869 None:intergenic 30.0%
ATACTTCTATTGCAACACTA+TGG + chr7_4:54153088-54153107 None:intergenic 30.0%
! AGTGTTGCAATAGAAGTATA+AGG - chr7_4:54153089-54153108 Msa1163090:intron 30.0%
CATTCCAACTTCTATACTAT+TGG + chr7_4:54153227-54153246 None:intergenic 30.0%
ACAACTGTTAAGTAGCAAAA+TGG + chr7_4:54153804-54153823 None:intergenic 30.0%
TGGAAAGAAATCCTTTAGAT+CGG - chr7_4:54153860-54153879 Msa1163090:CDS 30.0%
! TTTCATAATCTGAAGTCAAG+AGG + chr7_4:54153937-54153956 None:intergenic 30.0%
TTGACTTCAGATTATGAAAC+AGG - chr7_4:54153938-54153957 Msa1163090:CDS 30.0%
TGTAAGTGTACAGTTAATCT+TGG + chr7_4:54153981-54154000 None:intergenic 30.0%
GTTTAAGCTTTGCATAGTAA+GGG + chr7_4:54154635-54154654 None:intergenic 30.0%
TGTTTAAGCTTTGCATAGTA+AGG + chr7_4:54154636-54154655 None:intergenic 30.0%
CTTAAACATGAGCAAAATTG+TGG - chr7_4:54154648-54154667 Msa1163090:five_prime_UTR 30.0%
TTTGACATATCGATGATTGA+AGG + chr7_4:54154790-54154809 None:intergenic 30.0%
TGCAGTTGCAGATAATAAAA+AGG + chr7_4:54155105-54155124 None:intergenic 30.0%
! ATTTCCTTAGTCTAAAGCTA+TGG - chr7_4:54155319-54155338 Msa1163090:intron 30.0%
!! TATACCATAGCTTTAGACTA+AGG + chr7_4:54155326-54155345 None:intergenic 30.0%
! AGTCTAAAGCTATGGTATAT+AGG - chr7_4:54155327-54155346 Msa1163090:intron 30.0%
!! ATACATAAGTCGCTATTTCT+AGG - chr7_4:54155503-54155522 Msa1163090:intron 30.0%
!! TACATAAGTCGCTATTTCTA+GGG - chr7_4:54155504-54155523 Msa1163090:intron 30.0%
! AAGAATTTGAAATGCAAGAG+GGG + chr7_4:54155602-54155621 None:intergenic 30.0%
! CAAAGAATTTGAAATGCAAG+AGG + chr7_4:54155604-54155623 None:intergenic 30.0%
CTCTTGCATTTCAAATTCTT+TGG - chr7_4:54155602-54155621 Msa1163090:intron 30.0%
!! TTTCAAATTCTTTGGCTTTC+AGG - chr7_4:54155610-54155629 Msa1163090:intron 30.0%
!!! TTTCAGGTTTTCAATTGCTA+TGG - chr7_4:54155626-54155645 Msa1163090:intron 30.0%
CAAGATGACTAATAATTCAG+AGG - chr7_4:54155848-54155867 Msa1163090:intron 30.0%
!!! GAATCAAGCCCTTTATTTTT+CGG - chr7_4:54155870-54155889 Msa1163090:intron 30.0%
!!! AATCAAGCCCTTTATTTTTC+GGG - chr7_4:54155871-54155890 Msa1163090:intron 30.0%
CATTGTATAGAGCTTATTAC+GGG - chr7_4:54156003-54156022 Msa1163090:intron 30.0%
TAAAAGTGAAAGAAAGCTGA+AGG + chr7_4:54156146-54156165 None:intergenic 30.0%
!! GACTTCGTTTTTACATATAC+TGG + chr7_4:54156236-54156255 None:intergenic 30.0%
AAACAACAACGTTGTTGTGT+TGG - chr7_4:54152390-54152409 Msa1163090:three_prime_UTR 35.0%
!! GTGTTTGTTGGTATCGATTA+TGG + chr7_4:54152434-54152453 None:intergenic 35.0%
GACATGGTGTTTATATGTTG+TGG - chr7_4:54152630-54152649 Msa1163090:three_prime_UTR 35.0%
!!! GTTTTTTCCCTTGATTGGTA+TGG - chr7_4:54152659-54152678 Msa1163090:three_prime_UTR 35.0%
TCCAAAACCATACCAATCAA+GGG + chr7_4:54152669-54152688 None:intergenic 35.0%
ATCCAAAACCATACCAATCA+AGG + chr7_4:54152670-54152689 None:intergenic 35.0%
! ATTCTATTTATGGCTTGCCT+TGG - chr7_4:54152748-54152767 Msa1163090:CDS 35.0%
TCATGACAAACAAGTATCCA+AGG + chr7_4:54152768-54152787 None:intergenic 35.0%
TCTGTGTCTTGTGAAATTGA+AGG - chr7_4:54153018-54153037 Msa1163090:intron 35.0%
! AAGTATAAGGCACTAAGATC+TGG - chr7_4:54153102-54153121 Msa1163090:intron 35.0%
! AGTATAAGGCACTAAGATCT+GGG - chr7_4:54153103-54153122 Msa1163090:intron 35.0%
! TTGCAAAGTACTTCAACTTG+AGG + chr7_4:54153189-54153208 None:intergenic 35.0%
CTTGCCAATAGTATAGAAGT+TGG - chr7_4:54153220-54153239 Msa1163090:intron 35.0%
AGTTGGAATGCTGTATTGTT+TGG - chr7_4:54153237-54153256 Msa1163090:intron 35.0%
TACATATCTCAGAAGACAAG+TGG + chr7_4:54153278-54153297 None:intergenic 35.0%
GAGATATGTAGTGATTAGTG+AGG - chr7_4:54153288-54153307 Msa1163090:intron 35.0%
TGATGTTGTTGTCATGTTTC+AGG - chr7_4:54153505-54153524 Msa1163090:intron 35.0%
TATCCTAGGGAAACTCTATA+AGG - chr7_4:54153646-54153665 Msa1163090:intron 35.0%
ATACCTTATAGAGTTTCCCT+AGG + chr7_4:54153652-54153671 None:intergenic 35.0%
TTCAGATTATGAAACAGGCA+AGG - chr7_4:54153943-54153962 Msa1163090:CDS 35.0%
CTTACAAAATCCACTAGTGT+TGG - chr7_4:54153995-54154014 Msa1163090:CDS 35.0%
TACATCAAATTGTTGCAGAC+AGG + chr7_4:54154078-54154097 None:intergenic 35.0%
TCAAGCGTCTATTCATGTTT+CGG - chr7_4:54154143-54154162 Msa1163090:intron 35.0%
GCAATAGCGCATTTGAAAAA+AGG + chr7_4:54154174-54154193 None:intergenic 35.0%
ACCATGATCTTGGGAATATA+AGG - chr7_4:54154532-54154551 Msa1163090:five_prime_UTR 35.0%
ACCTTATATTCCCAAGATCA+TGG + chr7_4:54154536-54154555 None:intergenic 35.0%
! TCTTGGGAATATAAGGTGTT+TGG - chr7_4:54154539-54154558 Msa1163090:five_prime_UTR 35.0%
TTGAGATGATCAACAAGAGA+TGG + chr7_4:54154732-54154751 None:intergenic 35.0%
ATCTCTTGTTGATCATCTCA+AGG - chr7_4:54154731-54154750 Msa1163090:intron 35.0%
! TGGCATTTTCAACTTCATGT+GGG + chr7_4:54154818-54154837 None:intergenic 35.0%
ATGAAGTTGAAAATGCCACA+TGG - chr7_4:54154820-54154839 Msa1163090:intron 35.0%
AATGTTAAACAGTACTGCAG+GGG + chr7_4:54155080-54155099 None:intergenic 35.0%
GAATGTTAAACAGTACTGCA+GGG + chr7_4:54155081-54155100 None:intergenic 35.0%
AGAATGTTAAACAGTACTGC+AGG + chr7_4:54155082-54155101 None:intergenic 35.0%
TTATTATCTGCAACTGCAAG+TGG - chr7_4:54155107-54155126 Msa1163090:intron 35.0%
AGATCACATGACATACACTT+AGG - chr7_4:54155190-54155209 Msa1163090:intron 35.0%
ACTCATCCAATTTAGTTGCA+TGG - chr7_4:54155254-54155273 Msa1163090:intron 35.0%
ATGGTATATAGGTTCTGCTT+TGG - chr7_4:54155338-54155357 Msa1163090:intron 35.0%
AAATGTAACAAATCAGAGGG+AGG - chr7_4:54155413-54155432 Msa1163090:intron 35.0%
! CAGTTTTTATGGCCTTCTTA+CGG - chr7_4:54155696-54155715 Msa1163090:intron 35.0%
TTCAGTTACAGCTTAGAAGT+CGG - chr7_4:54155749-54155768 Msa1163090:intron 35.0%
TTATATGGCAAGGAATTCCT+AGG - chr7_4:54155789-54155808 Msa1163090:intron 35.0%
GAGTTGAAATTGAGAATCAC+CGG - chr7_4:54155907-54155926 Msa1163090:intron 35.0%
ATCTTCTTTCCATATACGAC+CGG + chr7_4:54155929-54155948 None:intergenic 35.0%
! TGTTGTAAGATTTTGCTCTC+TGG - chr7_4:54156027-54156046 Msa1163090:intron 35.0%
TTCAATTCCACACATCTTAG+AGG - chr7_4:54156099-54156118 Msa1163090:five_prime_UTR 35.0%
AAAAAGAGCTCCTGAAGTTG+CGG + chr7_4:54152479-54152498 None:intergenic 40.0%
! TCCCTTGATTGGTATGGTTT+TGG - chr7_4:54152665-54152684 Msa1163090:exon 40.0%
! TGGTTTGATTGATGGTTCCA+AGG - chr7_4:54152859-54152878 Msa1163090:CDS 40.0%
!! GCTTTGAAAGAACACTACCT+TGG + chr7_4:54152879-54152898 None:intergenic 40.0%
! GCTATCTACACTTTTGATGC+TGG - chr7_4:54152897-54152916 Msa1163090:intron 40.0%
GTAGTGATTAGTGAGGCATA+TGG - chr7_4:54153295-54153314 Msa1163090:intron 40.0%
GATTAGTGAGGCATATGGAT+TGG - chr7_4:54153300-54153319 Msa1163090:intron 40.0%
!! GAGGCATATGGATTGGAATT+TGG - chr7_4:54153307-54153326 Msa1163090:intron 40.0%
!!! AGCGATGTTTTGAGTTTGAG+AGG - chr7_4:54153442-54153461 Msa1163090:intron 40.0%
!!! GCTTTTTTTTCTTGACTCGC+TGG - chr7_4:54153531-54153550 Msa1163090:intron 40.0%
TACTCGTGCTAGATTATCCT+AGG - chr7_4:54153632-54153651 Msa1163090:intron 40.0%
ACTCGTGCTAGATTATCCTA+GGG - chr7_4:54153633-54153652 Msa1163090:intron 40.0%
CCATTTCTGATCCGATCTAA+AGG + chr7_4:54153874-54153893 None:intergenic 40.0%
CCTTTAGATCGGATCAGAAA+TGG - chr7_4:54153871-54153890 Msa1163090:CDS 40.0%
! TCTTTGAAAATACCTCCTCC+CGG + chr7_4:54153899-54153918 None:intergenic 40.0%
! TCCACTAGTGTTGGATTGAA+TGG - chr7_4:54154004-54154023 Msa1163090:CDS 40.0%
TCCATTCAATCCAACACTAG+TGG + chr7_4:54154008-54154027 None:intergenic 40.0%
GTTGGATTGAATGGAAAGCA+CGG - chr7_4:54154013-54154032 Msa1163090:CDS 40.0%
CACGGAACTAGTTCAAAGAA+TGG - chr7_4:54154031-54154050 Msa1163090:CDS 40.0%
AATGGTGTGCATGACTTACT+CGG - chr7_4:54154049-54154068 Msa1163090:CDS 40.0%
CAAGCGTCTATTCATGTTTC+GGG - chr7_4:54154144-54154163 Msa1163090:intron 40.0%
TGTGTGTTTCAGTGTCCAAA+TGG - chr7_4:54154453-54154472 Msa1163090:five_prime_UTR 40.0%
GAACATAACGTATGGCCATT+TGG + chr7_4:54154471-54154490 None:intergenic 40.0%
! GAATATAAGGTGTTTGGCTC+TGG - chr7_4:54154545-54154564 Msa1163090:five_prime_UTR 40.0%
CTTGCAGATATCAGAGTCTA+GGG - chr7_4:54154595-54154614 Msa1163090:five_prime_UTR 40.0%
TCATCTCAAGGATGAACACA+AGG - chr7_4:54154743-54154762 Msa1163090:intron 40.0%
! GTGGCATTTTCAACTTCATG+TGG + chr7_4:54154819-54154838 None:intergenic 40.0%
AGACAGTCAGATCAACAAAC+AGG + chr7_4:54154871-54154890 None:intergenic 40.0%
GCAAAGTAGCTACAACTTGA+TGG - chr7_4:54155440-54155459 Msa1163090:intron 40.0%
TTGAAGACGAGAAATCGCAT+TGG - chr7_4:54155464-54155483 Msa1163090:intron 40.0%
GCATTTCTGTTTGCACTTTG+AGG - chr7_4:54155652-54155671 Msa1163090:intron 40.0%
! TGGTACAGCTCCAGTTTTTA+TGG - chr7_4:54155685-54155704 Msa1163090:intron 40.0%
CGTAAGAAGGCCATAAAAAC+TGG + chr7_4:54155698-54155717 None:intergenic 40.0%
TATGGCCTTCTTACGGTTTA+TGG - chr7_4:54155703-54155722 Msa1163090:intron 40.0%
ATGGCCTTCTTACGGTTTAT+GGG - chr7_4:54155704-54155723 Msa1163090:intron 40.0%
CATATGGGCGCAAACTTATA+TGG - chr7_4:54155774-54155793 Msa1163090:intron 40.0%
!!! AAGCCCTTTATTTTTCGGGT+GGG - chr7_4:54155875-54155894 Msa1163090:intron 40.0%
ATCCCCACCCGAAAAATAAA+GGG + chr7_4:54155881-54155900 None:intergenic 40.0%
TATCCCCACCCGAAAAATAA+AGG + chr7_4:54155882-54155901 None:intergenic 40.0%
CTGGTAATTTCCGCAACTTC+AGG - chr7_4:54152466-54152485 Msa1163090:three_prime_UTR 45.0%
! TTTCTTGACTCGCTGGATCT+TGG - chr7_4:54153538-54153557 Msa1163090:intron 45.0%
!! TAAGTGTTGGCCAGAGACTT+TGG - chr7_4:54153595-54153614 Msa1163090:intron 45.0%
!! AAGTGTTGGCCAGAGACTTT+GGG - chr7_4:54153596-54153615 Msa1163090:intron 45.0%
ATGGTGTGCATGACTTACTC+GGG - chr7_4:54154050-54154069 Msa1163090:CDS 45.0%
GATGTATCCTCCAATTCACC+AGG - chr7_4:54154092-54154111 Msa1163090:intron 45.0%
ATTCCCAAGATCATGGTGAC+AGG + chr7_4:54154529-54154548 None:intergenic 45.0%
CCTAGACTCTGATATCTGCA+AGG + chr7_4:54154597-54154616 None:intergenic 45.0%
CCTTGCAGATATCAGAGTCT+AGG - chr7_4:54154594-54154613 Msa1163090:five_prime_UTR 45.0%
CCAGCATAGGGACAATTGTA+TGG + chr7_4:54154681-54154700 None:intergenic 45.0%
CCATACAATTGTCCCTATGC+TGG - chr7_4:54154678-54154697 Msa1163090:five_prime_UTR 45.0%
CACAAGGTTGACATGCATGA+TGG - chr7_4:54154759-54154778 Msa1163090:intron 45.0%
ACTTACAGTGAGCATCCATG+TGG + chr7_4:54154838-54154857 None:intergenic 45.0%
GCTCACTGTAAGTGACTCAA+TGG - chr7_4:54154845-54154864 Msa1163090:intron 45.0%
ATCGCCCATAAACCGTAAGA+AGG + chr7_4:54155711-54155730 None:intergenic 45.0%
AGCTTAGAAGTCGGTGCATA+TGG - chr7_4:54155758-54155777 Msa1163090:intron 45.0%
GCTTAGAAGTCGGTGCATAT+GGG - chr7_4:54155759-54155778 Msa1163090:intron 45.0%
!!! CAAGCCCTTTATTTTTCGGG+TGG - chr7_4:54155874-54155893 Msa1163090:intron 45.0%
!!! AGCCCTTTATTTTTCGGGTG+GGG - chr7_4:54155876-54155895 Msa1163090:intron 45.0%
!!! TTTTTCGGGTGGGGATAAAC+AGG - chr7_4:54155885-54155904 Msa1163090:intron 45.0%
TGAGAATCACCGGTCGTATA+TGG - chr7_4:54155917-54155936 Msa1163090:intron 45.0%
TTCCACACATCTTAGAGGTG+AGG - chr7_4:54156104-54156123 Msa1163090:five_prime_UTR 45.0%
TCCACACATCTTAGAGGTGA+GGG - chr7_4:54156105-54156124 Msa1163090:five_prime_UTR 45.0%
ACATTCACGCCCAAAGTCTC+TGG + chr7_4:54153608-54153627 None:intergenic 50.0%
TCAAATGCACACGCAATGCG+AGG + chr7_4:54153706-54153725 None:intergenic 50.0%
GATCGGATCAGAAATGGCTC+CGG - chr7_4:54153877-54153896 Msa1163090:CDS 50.0%
ATCGGATCAGAAATGGCTCC+GGG - chr7_4:54153878-54153897 Msa1163090:CDS 50.0%
AAGCAGTGCACCTGGTGAAT+TGG + chr7_4:54154105-54154124 None:intergenic 50.0%
GAAATTGCAAGCAGTGCACC+TGG + chr7_4:54154113-54154132 None:intergenic 50.0%
GACAGGTGGGACAGAGATTA+TGG + chr7_4:54154512-54154531 None:intergenic 50.0%
CCAAGATCATGGTGACAGGT+GGG + chr7_4:54154525-54154544 None:intergenic 50.0%
CCACCTGTCACCATGATCTT+GGG - chr7_4:54154523-54154542 Msa1163090:five_prime_UTR 50.0%
!! GTGTTTGGCTCTGGAGAAAG+TGG - chr7_4:54154554-54154573 Msa1163090:five_prime_UTR 50.0%
!! TTTGGCTCTGGAGAAAGTGG+CGG - chr7_4:54154557-54154576 Msa1163090:five_prime_UTR 50.0%
! GGAGAAAGTGGCGGAATCTT+TGG - chr7_4:54154566-54154585 Msa1163090:five_prime_UTR 50.0%
GAGCACTCAGATCCAGCATA+GGG + chr7_4:54154693-54154712 None:intergenic 50.0%
AGATGGAATGTCGCCCATCA+CGG + chr7_4:54154715-54154734 None:intergenic 50.0%
! AAACAGTACTGCAGGGGCAT+TGG + chr7_4:54155074-54155093 None:intergenic 50.0%
TCTGCAACTGCAAGTGGTGT+TGG - chr7_4:54155113-54155132 Msa1163090:intron 50.0%
!! CACTTTGAGGCTTTCCAGCT+TGG - chr7_4:54155665-54155684 Msa1163090:five_prime_UTR 50.0%
AAACTGGAGCTGTACCAAGC+TGG + chr7_4:54155682-54155701 None:intergenic 50.0%
GGGCGCAAACTTATATGGCA+AGG - chr7_4:54155779-54155798 Msa1163090:intron 50.0%
!! ACCCTCACCTCTAAGATGTG+TGG + chr7_4:54156109-54156128 None:intergenic 50.0%
CAGTGCACCTGGTGAATTGG+AGG + chr7_4:54154102-54154121 None:intergenic 55.0%
CCCACCTGTCACCATGATCT+TGG - chr7_4:54154522-54154541 Msa1163090:five_prime_UTR 55.0%
CCCAAGATCATGGTGACAGG+TGG + chr7_4:54154526-54154545 None:intergenic 55.0%
! GGAGCACTCAGATCCAGCAT+AGG + chr7_4:54154694-54154713 None:intergenic 55.0%
TGGATCTGAGTGCTCCGTGA+TGG - chr7_4:54154698-54154717 Msa1163090:five_prime_UTR 55.0%
GGATCTGAGTGCTCCGTGAT+GGG - chr7_4:54154699-54154718 Msa1163090:five_prime_UTR 55.0%
TGACTGTCGCGTATGCTCCT+AGG + chr7_4:54155809-54155828 None:intergenic 55.0%
GGATCAGAAATGGCTCCGGG+AGG - chr7_4:54153881-54153900 Msa1163090:CDS 60.0%
TCAGAAATGGCTCCGGGAGG+AGG - chr7_4:54153884-54153903 Msa1163090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 54152274 54156264 54152274 ID=Msa1163090;Name=Msa1163090
chr7_4 mRNA 54152274 54156264 54152274 ID=Msa1163090-mRNA-1;Parent=Msa1163090;Name=Msa1163090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=639|0.83|0.71|1|0.16|0.14|7|405|209
chr7_4 exon 54152274 54152906 54152274 ID=Msa1163090-mRNA-1:exon:15697;Parent=Msa1163090-mRNA-1
chr7_4 exon 54153687 54153922 54153687 ID=Msa1163090-mRNA-1:exon:15696;Parent=Msa1163090-mRNA-1
chr7_4 exon 54153929 54154073 54153929 ID=Msa1163090-mRNA-1:exon:15695;Parent=Msa1163090-mRNA-1
chr7_4 exon 54154425 54154718 54154425 ID=Msa1163090-mRNA-1:exon:15694;Parent=Msa1163090-mRNA-1
chr7_4 exon 54154871 54155011 54154871 ID=Msa1163090-mRNA-1:exon:15693;Parent=Msa1163090-mRNA-1
chr7_4 exon 54155658 54155687 54155658 ID=Msa1163090-mRNA-1:exon:15692;Parent=Msa1163090-mRNA-1
chr7_4 exon 54156070 54156264 54156070 ID=Msa1163090-mRNA-1:exon:15691;Parent=Msa1163090-mRNA-1
chr7_4 five_prime_UTR 54156070 54156264 54156070 ID=Msa1163090-mRNA-1:five_prime_utr;Parent=Msa1163090-mRNA-1
chr7_4 five_prime_UTR 54155658 54155687 54155658 ID=Msa1163090-mRNA-1:five_prime_utr;Parent=Msa1163090-mRNA-1
chr7_4 five_prime_UTR 54154871 54155011 54154871 ID=Msa1163090-mRNA-1:five_prime_utr;Parent=Msa1163090-mRNA-1
chr7_4 five_prime_UTR 54154446 54154718 54154446 ID=Msa1163090-mRNA-1:five_prime_utr;Parent=Msa1163090-mRNA-1
chr7_4 CDS 54154425 54154445 54154425 ID=Msa1163090-mRNA-1:cds;Parent=Msa1163090-mRNA-1
chr7_4 CDS 54153929 54154073 54153929 ID=Msa1163090-mRNA-1:cds;Parent=Msa1163090-mRNA-1
chr7_4 CDS 54153687 54153922 54153687 ID=Msa1163090-mRNA-1:cds;Parent=Msa1163090-mRNA-1
chr7_4 CDS 54152679 54152906 54152679 ID=Msa1163090-mRNA-1:cds;Parent=Msa1163090-mRNA-1
chr7_4 three_prime_UTR 54152274 54152678 54152274 ID=Msa1163090-mRNA-1:three_prime_utr;Parent=Msa1163090-mRNA-1
Gene Sequence

>Msa1163090

ATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACGTTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCAGATATCAGAGGTGTAATGATATTTTCCCTTACTATGCAAAGCTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCCGTGATGGGCGACATTCCATCTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTCGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGACTAA

Protein sequence

>Msa1163090

MYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQRCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDD*